BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4398
(306 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|383849955|ref|XP_003700598.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
[Megachile rotundata]
Length = 467
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 138/223 (61%), Positives = 174/223 (78%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+NY NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+VND+L TID++D
Sbjct: 14 LNYENKLILAPMVRIGTLPMRLLALDYGADIVYTEELIDWKLLRSFRRVNDVLGTIDYID 73
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
DG+V FRTCPRE++ ++LQIGT D RAL+ AK +E DVA ID+NMGCPK FSL G M
Sbjct: 74 KTDGTVTFRTCPRERDHVVLQIGTCDAARALKVAKMIEQDVAGIDLNMGCPKLFSLVGKM 133
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL P+ A NIL TL+ NLSIPV+CKIRV + DT+ LC+ L + GI AI VHGRT
Sbjct: 134 GAALLQEPETATNILKTLVDNLSIPVTCKIRVLPDLNDTLELCELLASTGISAIAVHGRT 193
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
ERP+H NR E++R +++ L IPVIANGGSKEI + +F
Sbjct: 194 VEERPQHANRNEVLREISKKLSIPVIANGGSKEIQKHSDIFKF 236
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 238 KEIVDYGGVFSLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVT 296
+++++ V ++CAFLRN+Y + LPKTIL+ + +R ++P+Y+T+Q KLFRS+VT
Sbjct: 362 RKLINEEDVVLMHCAFLRNNYLTDLDLPKTILHKWTQSQRKKIPRYDTLQKGKLFRSIVT 421
Query: 297 VNGKQYTSKF 306
V+G+++ S F
Sbjct: 422 VDGRKFGSSF 431
>gi|193690494|ref|XP_001952087.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Acyrthosiphon
pisum]
Length = 456
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 139/212 (65%), Positives = 170/212 (80%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y NKIILAPMVR+NTLP RLLALDYGAD+VY+EEL+DH+L++ RKVN+ L ++DF+D
Sbjct: 12 YDNKIILAPMVRINTLPMRLLALDYGADIVYTEELIDHRLIRCYRKVNETLESVDFIDKS 71
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
D +VVFRTC REK+ ++LQIGT+DPERA +AA+ VE DVA IDINMGCPK FSL GGMGA
Sbjct: 72 DATVVFRTCSREKHNVVLQIGTSDPERAAKAAQVVEQDVAGIDINMGCPKDFSLKGGMGA 131
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL PD AC IL+ ++S + IPV+CKIRV + DT+ALCK+L A G+ AI VHGRT
Sbjct: 132 ALLFHPDKACAILSAVVSAVKIPVTCKIRVLQDIDDTVALCKKLAATGVAAICVHGRTIN 191
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
ERP H NR I+ +++ L IPVIANGGSKEI
Sbjct: 192 ERPMHSNRNHFIKAISEALDIPVIANGGSKEI 223
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
+ C + +G + R K ++ + E R + + + + N +E +YG SL C
Sbjct: 311 QICDLWELGDYCRQKQKKMNYLRFEE--RDVVYNDQKRIKLNSADEEESNYGN--SLKCM 366
Query: 253 FLRNHYPV-EKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSKF 306
++R+ YP E LPKT L K +PKY T Q+EKLF+S VT + ++Y+S F
Sbjct: 367 YIRSLYPRPEDLPKTKLLNWAKKHNKPLPKYHTEQFEKLFKSTVTFDNQKYSSSF 421
>gi|328787042|ref|XP_393745.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Apis mellifera]
Length = 460
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 139/231 (60%), Positives = 175/231 (75%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
M + +NY NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+
Sbjct: 1 MIKMERKRLNYENKLILAPMVRIGTLPMRLLALDYGADVVYTEELIDWKLLRSFRRENDV 60
Query: 79 LNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
L TID++D DG+V FRTCP+EK+K++LQIGT D RAL+ AK VE DVA ID+NMGCPK
Sbjct: 61 LGTIDYIDKTDGTVTFRTCPKEKDKVVLQIGTCDAARALKVAKMVEQDVAGIDLNMGCPK 120
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198
FSL G MGAALL P+ A NIL TL+ NL+IPV+CKIRV + TI LC+ L++ GI
Sbjct: 121 LFSLIGKMGAALLKEPETATNILKTLVDNLNIPVTCKIRVLPDIDKTIELCELLQSTGIA 180
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
AI VHGRT ERP+H NR E+++ ++ L IPVIANGGSKEI Y +F
Sbjct: 181 AIAVHGRTVHERPQHMNRNEVLKKISNRLSIPVIANGGSKEIQKYSDIFKF 231
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 238 KEIVDYGGVFSLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVT 296
++I++ V ++CAFLRN+Y + +LPKT+L+ + +R ++P Y T Q KLFRS+VT
Sbjct: 355 RKILEEEDVILMHCAFLRNNYITDLELPKTVLHKWTQTQRKKMPNYNTQQKGKLFRSIVT 414
Query: 297 VNGKQYTSKF 306
V+G++Y S F
Sbjct: 415 VDGRKYGSSF 424
>gi|380016047|ref|XP_003692004.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Apis
florea]
Length = 460
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/231 (59%), Positives = 175/231 (75%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
M + ++Y NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+
Sbjct: 1 MIKMERKRLSYENKLILAPMVRIGTLPMRLLALDYGADVVYTEELIDWKLLRSFRRENDV 60
Query: 79 LNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
L TID++D DG+V FRTCP+EK+K++LQIGT D RAL+ AK VE DVA ID+NMGCPK
Sbjct: 61 LGTIDYIDKTDGTVTFRTCPKEKDKVVLQIGTCDAARALKVAKMVEQDVAGIDLNMGCPK 120
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198
FSL G MGAALL P+ A NIL TL+ NL+IPV+CKIRV + TI LC+ L++ GI
Sbjct: 121 LFSLIGKMGAALLKEPETATNILKTLVDNLNIPVTCKIRVLPDIDKTIELCELLQSTGIA 180
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
AI VHGRT ERP+H NR E+++ ++ L IPVIANGGSKEI Y +F
Sbjct: 181 AIAVHGRTVHERPQHMNRNEVLKKISDRLSIPVIANGGSKEIQKYSDIFKF 231
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 238 KEIVDYGGVFSLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVT 296
++I++ V ++CAFLRN+Y + +LPKTIL+ + +R ++P Y T Q KLFRS+VT
Sbjct: 355 RKILEEEDVILMHCAFLRNNYITDLELPKTILHKWTQTQRKKMPNYNTQQKGKLFRSIVT 414
Query: 297 VNGKQYTSKF 306
V+G++Y S F
Sbjct: 415 VDGRKYGSSF 424
>gi|340720499|ref|XP_003398674.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Bombus terrestris]
Length = 450
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 137/223 (61%), Positives = 173/223 (77%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+NY NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+L TID++D
Sbjct: 14 LNYENKLILAPMVRIGTLPMRLLALDYGADIVYTEELIDWKLLRSFRRENDVLGTIDYID 73
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
DG+V FRTC +E+NK++LQIGT D RAL+ AK VE DVA ID+NMGCPK FSL G M
Sbjct: 74 KTDGTVTFRTCLKERNKVVLQIGTCDATRALKVAKMVEQDVAGIDLNMGCPKLFSLVGKM 133
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL P+IA NIL TL+ NLSIPV+CKIRV + T+ LC+ L++ GI AI VHGRT
Sbjct: 134 GAALLKEPEIATNILKTLVDNLSIPVTCKIRVLPDLDKTLELCELLQSTGISAIAVHGRT 193
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
ERP+H NR ++++ ++ L IPVIANGGSKEI Y +F
Sbjct: 194 VNERPQHMNRNDVLKKISDRLAIPVIANGGSKEIQKYSDIFKF 236
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 238 KEIVDYGGVFSLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVT 296
++I + V ++CAFLRN+Y + +LPKTIL+ + +R ++P Y T Q KLF+S+VT
Sbjct: 362 RKISEEEDVTLMHCAFLRNNYVTDLELPKTILHKWTQTQRKKIPSYNTQQKGKLFQSIVT 421
Query: 297 VNGKQYTSKF 306
V+G++Y S F
Sbjct: 422 VDGRRYGSSF 431
>gi|350412745|ref|XP_003489746.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Bombus impatiens]
Length = 467
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 137/223 (61%), Positives = 173/223 (77%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+NY NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+L TID++D
Sbjct: 14 LNYENKLILAPMVRIGTLPMRLLALDYGADIVYTEELIDWKLLRSFRRENDVLGTIDYID 73
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
DG+V FRTC +E+NK++LQIGT D RAL+ AK VE DVA ID+NMGCPK FSL G M
Sbjct: 74 KTDGTVTFRTCLKERNKVVLQIGTCDATRALKVAKMVEQDVAGIDLNMGCPKLFSLVGKM 133
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL P+IA NIL TL+ NLSIPV+CKIRV + T+ LC+ L++ GI AI VHGRT
Sbjct: 134 GAALLKEPEIATNILKTLVDNLSIPVTCKIRVLPDLDKTLELCELLQSTGISAIAVHGRT 193
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
ERP+H NR ++++ ++ L IPVIANGGSKEI Y +F
Sbjct: 194 VNERPQHMNRNDVLKKISDRLAIPVIANGGSKEIQKYSDIFKF 236
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 238 KEIVDYGGVFSLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVT 296
++I + V ++CAFLRN+Y + +LPKTIL+ + +R ++P Y+T Q KLF+S+VT
Sbjct: 362 RKISEEEDVTLMHCAFLRNNYVTDLELPKTILHKWTQTQRKKMPNYDTQQKGKLFQSIVT 421
Query: 297 VNGKQYTSKF 306
V+G++Y S F
Sbjct: 422 VDGRRYGSSF 431
>gi|91082415|ref|XP_970120.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Tribolium
castaneum]
gi|270007514|gb|EFA03962.1| hypothetical protein TcasGA2_TC014107 [Tribolium castaneum]
Length = 455
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 134/228 (58%), Positives = 178/228 (78%), Gaps = 2/228 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y NKIILAPMVR+ TLP RLL+LD+GAD+VY+EEL+D K +K+ R+ ND+L T+D++D
Sbjct: 8 LTYDNKIILAPMVRVGTLPMRLLSLDHGADIVYTEELIDWKFLKSIRRENDVLGTVDYLD 67
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
DG+VVFRTCPREKN++++Q+GT DP+RAL+ AK +E+DVA IDINMGCPK+FSL GGM
Sbjct: 68 KSDGTVVFRTCPREKNRVVVQLGTCDPQRALKVAKMIENDVAGIDINMGCPKEFSLKGGM 127
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL P+ A +IL+TL N+ IP++CKIRVF + +T+ L K L + GI AI +HGRT
Sbjct: 128 GAALLKQPEKAKSILSTLTQNVKIPITCKIRVFESAEETLDLVKELVSTGISAIAIHGRT 187
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
KAERP+H NR I+ + +++ IPV+ANGGSKEI Y + F C
Sbjct: 188 KAERPQHPNRNATIKFIAENVSIPVVANGGSKEIEKYQDIIKFKEECG 235
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 189 CKRLEA-CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247
C+ LE C I + + R K + H I R +T + P A E+ D V
Sbjct: 304 CQTLEQICAIWDLADYCR-KKQLQFHSQGILSRREITPDMFSPK-AKKVKTELDD--DVI 359
Query: 248 SLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSKF 306
+ CAF+R +YP + LPK+ + A+C +F++PKY+TV +KLFR++ T GK+Y+S +
Sbjct: 360 EMKCAFIRVNYPDDPDLPKSKIIAYCGKHKFDLPKYQTVNEDKLFRAIATFQGKKYSSSY 419
>gi|307169925|gb|EFN62434.1| tRNA-dihydrouridine synthase 2-like [Camponotus floridanus]
Length = 467
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 131/228 (57%), Positives = 175/228 (76%)
Query: 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLL 79
A + +NY NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+L
Sbjct: 6 APVTRTRLNYDNKLILAPMVRIGTLPMRLLALDYGADIVYTEELIDRKLLRSIRRENDVL 65
Query: 80 NTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQ 139
+TID++D DG+VVFRTCPRE+ ++LQIGT+DP RA E A+ VE DVA ID+NMGCPK+
Sbjct: 66 STIDYIDKTDGTVVFRTCPREREHVVLQIGTSDPLRAAEVARMVEKDVAGIDVNMGCPKK 125
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIA 199
FS+ GGMGA+LLS P A NIL +I ++IPV+CKIRV + +T+ LC L + GI A
Sbjct: 126 FSILGGMGASLLSDPRKATNILRKMIETVTIPVTCKIRVLFSLEETLQLCDTLASTGIEA 185
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247
I +HGRT ERP+H NR ++++ ++ L IPVIANGGSK+I + +F
Sbjct: 186 IAIHGRTIEERPQHPNRNQVLKQISDRLSIPVIANGGSKDIQQHSDIF 233
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS--KEIVDYGGVFSLN 250
+ C + +G + R+K + R + + + + L N S ++I + V +
Sbjct: 314 QICEVWGLGDYCRSKNKEFRDKGLLGRFQVMPVMLDKDAKDNNVSHKRKIYEENDVSLMR 373
Query: 251 CAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSKF 306
CAFLRN Y + +LPKT L K R ++P Y T Q +KLF S+VTV+G++Y S F
Sbjct: 374 CAFLRNSYTTDSELPKTRLLKWTKENRKKMPIYNTQQEDKLFCSVVTVDGRKYGSSF 430
>gi|321458641|gb|EFX69706.1| hypothetical protein DAPPUDRAFT_300841 [Daphnia pulex]
Length = 459
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 131/228 (57%), Positives = 173/228 (75%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ +NY +KIILAPMVRM TLP RLLAL YGAD+VY+EE+VD K+V+T+R VN++L T+DF
Sbjct: 2 SRLNYVDKIILAPMVRMGTLPLRLLALRYGADIVYTEEIVDKKMVRTKRVVNEILGTVDF 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
+D DGSVVFRTC E ++++ Q+GT+D E AL AK VE DVA D+NMGCPK+FS+ G
Sbjct: 62 IDEFDGSVVFRTCNEESSRVVFQVGTSDAELALNVAKLVEKDVAGFDVNMGCPKEFSIKG 121
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALL P+ +ILT L+SN SIP++CK+R+ +TI+L ++ CG+ A+ VHG
Sbjct: 122 GMGAALLKQPEKVKDILTNLVSNTSIPITCKMRLLPTIEETISLANIIQNCGVAAVAVHG 181
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
RTK ERP+H N E I+T+ ++LKIPVIANGGSKEI Y + + A
Sbjct: 182 RTKEERPQHPNNNEAIKTIVENLKIPVIANGGSKEIETYEQILRFHKA 229
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 254 LRNHYPVEKLPKTILYAH-CKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSKF 306
LR Y LPKT+L+ + CK + ++P Y + Q +KLF S V V G++Y +++
Sbjct: 370 LRKPYQKHILPKTVLHEYACKAQHSKLPLYHSEQVDKLFFSTVVVEGQRYANRY 423
>gi|241615739|ref|XP_002406800.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
gi|215500870|gb|EEC10364.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
Length = 449
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 170/226 (75%), Gaps = 1/226 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
I+Y NK+ILAPMVR+ TLP RLLAL YGADLVYSEEL+D++L+K +R N +L T+D++D
Sbjct: 5 IDYKNKVILAPMVRIGTLPMRLLALHYGADLVYSEELIDYRLLKCQRLENQVLGTVDYID 64
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
D +VFRTC +E+ K ILQIGT PERA++ AK VE DVA ID+NMGCPK+FSL GGM
Sbjct: 65 D-DHQIVFRTCEKERGKNILQIGTCSPERAVQVAKLVEKDVAGIDVNMGCPKEFSLKGGM 123
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ D ILT L+ + ++PV+CKIRV DT+AL K +E+ G+ A+GVHGRT
Sbjct: 124 GAALLTQLDKVKAILTALVQSTTLPVTCKIRVLDRLEDTLALGKLIESTGVKALGVHGRT 183
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
K ERP+H+NR I+ L +HL IPVIANGGS EIVDY + A
Sbjct: 184 KEERPQHKNRNATIKALAEHLTIPVIANGGSSEIVDYEDIERFRVA 229
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSK 305
V+ + F+RN + + LPKT L + + P Y+T EK FRS+V V+ K+Y+S
Sbjct: 351 VWQMEAKFVRNMFEMSNLPKTTLINWTRKNNYPHPSYKTEAKEKSFRSVVVVDSKRYSST 410
Query: 306 F 306
F
Sbjct: 411 F 411
>gi|442757563|gb|JAA70940.1| Putative trna-dihydrouridine synthase [Ixodes ricinus]
Length = 451
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/217 (61%), Positives = 168/217 (77%), Gaps = 1/217 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
I+Y NK+ILAPMVR+ TLP RLLAL YGADLVYSEEL+D++L+K +R N +L T+D++D
Sbjct: 5 IDYKNKVILAPMVRIGTLPMRLLALHYGADLVYSEELIDYRLLKCQRLENKVLGTVDYID 64
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
D +VFRTC +E+ K ILQIGT PERA++ AK VE DVA ID+NMGCPK+FSL GGM
Sbjct: 65 D-DHQIVFRTCEKERGKNILQIGTCSPERAVQVAKLVEKDVAGIDVNMGCPKEFSLKGGM 123
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ D ILT L+ + ++PV+CKIRV DT+AL K +E+ G+ A+GVHGRT
Sbjct: 124 GAALLTQLDKVKAILTALVQSTTLPVTCKIRVLDRLEDTLALGKLIESTGVKALGVHGRT 183
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
K ERP+H+NR I+ L +HL IPVIANGGS EIVDY
Sbjct: 184 KEERPQHKNRNATIKALAEHLTIPVIANGGSGEIVDY 220
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSK 305
V+ + F+RN + + LPKT+L + + P Y+T EK FRS+V V+ K+Y+S
Sbjct: 353 VWQMEAKFVRNMFEMSNLPKTMLINWTRKNNYPHPSYKTEAKEKSFRSVVVVDNKKYSST 412
Query: 306 F 306
F
Sbjct: 413 F 413
>gi|307207077|gb|EFN84886.1| tRNA-dihydrouridine synthase 2-like [Harpegnathos saltator]
Length = 512
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/266 (51%), Positives = 183/266 (68%), Gaps = 21/266 (7%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+NY NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+L TID++D
Sbjct: 58 LNYENKLILAPMVRIGTLPMRLLALDYGADIVYTEELIDWKLLRSIRRENDVLGTIDYID 117
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
D +V FRTC RE++ ++LQIGT+DP RA++ A VE DVA ID+NMGCPK+FS+ GGM
Sbjct: 118 KTDRTVAFRTCSRERDNVVLQIGTSDPTRAVQVASMVEKDVAGIDVNMGCPKKFSILGGM 177
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ P A +IL LI +SIPV+CKIRV N +T LC L + GI AI VHGRT
Sbjct: 178 GAALLTNPQQATSILRKLIETVSIPVTCKIRVLPNLEETFQLCDTLTSTGIEAIAVHGRT 237
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF-----------------SL 249
ERP+H NR +++ ++ L IPVIANGGSK++ ++ +F
Sbjct: 238 IDERPQHSNRNHVLKLISDRLSIPVIANGGSKDVQNHSDIFRFKEETGCSSVMLARAAEW 297
Query: 250 NCAFLRNHYPVEKLP-KTILYAHCKY 274
NC+ R P LP + ++ ++ KY
Sbjct: 298 NCSVFRKEGP---LPMEDVIKSYLKY 320
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 238 KEIVDYGGVFSLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVT 296
+++ D V + CAFLR+ Y + +LPKT L K ++P Y+T + +KLF S+VT
Sbjct: 406 RKMHDEEDVALMRCAFLRSSYTTDSELPKTRLCKWTKDHHKKMPVYDTRKNDKLFCSVVT 465
Query: 297 VNGKQYTSKF 306
V+G++Y S F
Sbjct: 466 VDGRKYGSSF 475
>gi|345479115|ref|XP_001602214.2| PREDICTED: tRNA-dihydrouridine synthase 2-like [Nasonia
vitripennis]
Length = 465
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 130/229 (56%), Positives = 172/229 (75%)
Query: 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLN 80
A++ + Y++K+I+APMVR+ TLP RLLAL+YGAD+VY+EEL+D KL+++ R+VN++L
Sbjct: 7 EASRPRLTYADKLIMAPMVRIGTLPMRLLALEYGADIVYTEELIDWKLLRSVRRVNEVLG 66
Query: 81 TIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
T+D++D DG++VFRT P E+++++LQ+GT D RAL+ AK VE DVA ID+NMGCPK+F
Sbjct: 67 TVDYIDRTDGTIVFRTSPIERDRVVLQLGTCDANRALKVAKLVEQDVAGIDVNMGCPKRF 126
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200
S+ GGMGAALL P+ A IL TL+ LSIPV+CKIRV N DT+ L L GI AI
Sbjct: 127 SILGGMGAALLKQPEKASEILRTLVGGLSIPVTCKIRVLGNVEDTLKLVDTLVDTGISAI 186
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
VHGRT ERP+H NR E I+ + +H KIPVIANGGSKEI +F
Sbjct: 187 TVHGRTVDERPQHPNRSEFIKRVAEHAKIPVIANGGSKEIEKRADIFKF 235
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS--KEIVDYGGVFSLN 250
+ C + + + RTK + R R + + L + + NGG+ +++ + V +
Sbjct: 314 QICEVWGLDEYCRTKQKEHRDRGFGGRFEVVPERLSL-IDGNGGAGKRKLDEEEDVLLMR 372
Query: 251 CAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSKF 306
CAFLRN+Y + LPK+ L + R ++P Y T +KLFRS+V V+G++Y S F
Sbjct: 373 CAFLRNNYADDTSLPKSRLAKWTRDNRKKLPIYVTHHEDKLFRSVVQVDGRKYGSSF 429
>gi|195448673|ref|XP_002071763.1| GK10156 [Drosophila willistoni]
gi|194167848|gb|EDW82749.1| GK10156 [Drosophila willistoni]
Length = 458
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 130/228 (57%), Positives = 175/228 (76%), Gaps = 2/228 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ YSNK+ILAPMVR+ TLP RLLAL+ GAD+VY+EEL+D KL+K+ R+ N L T+DFVD
Sbjct: 7 LEYSNKLILAPMVRVGTLPMRLLALEMGADIVYTEELIDLKLIKSIRRPNHALGTVDFVD 66
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P DG+VVFRTC +E ++++LQ+GT+D ERAL K ++ D++ +DINMGCPK+FS+ GGM
Sbjct: 67 PSDGTVVFRTCAQETSQLVLQMGTSDAERALAVGKLLQRDISGLDINMGCPKEFSIKGGM 126
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD A IL+TL SNL IPV+CKIR+ + ADTIAL ++L A GI AIG+H RT
Sbjct: 127 GAALLAEPDKAAQILSTLCSNLEIPVTCKIRILPDVADTIALVQKLAATGIAAIGIHART 186
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
+ ERP+H+ +++R + Q + IPVIANGGS+ + Y + F L C
Sbjct: 187 RDERPQHQPHPDVLREVAQSVTIPVIANGGSRHMHCYDDLLKFQLECG 234
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 244 GGVFSLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQY 302
G+ + AFLR+ Y + +LPKT LY H P YET Q +KLFR++ +G+++
Sbjct: 359 AGLICRHVAFLRSTYQSDTELPKTRLYVHAGRLSKSPPAYETKQCDKLFRAVCLFDGQRF 418
Query: 303 TSKF 306
+S F
Sbjct: 419 SSTF 422
>gi|332022994|gb|EGI63259.1| tRNA-dihydrouridine synthase 2-like protein [Acromyrmex echinatior]
Length = 461
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 125/221 (56%), Positives = 171/221 (77%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y+NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+L T+D++D
Sbjct: 11 LDYNNKLILAPMVRIGTLPMRLLALDYGADIVYTEELIDRKLLRSIRRENDVLGTVDYID 70
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
DG+VVFRTC RE+ ++LQIGT+DP RA + A+ VE+DVA IDINMGCPK+FS+ GGM
Sbjct: 71 KTDGTVVFRTCSREREHVVLQIGTSDPARAAQVARMVENDVAGIDINMGCPKKFSILGGM 130
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GA+LL P A +IL LI ++IP++CKIR+ + +T+ LC L + GI AI VHGRT
Sbjct: 131 GASLLREPQKAIDILRKLIETVTIPITCKIRILPDLEETLLLCDTLASTGIAAIAVHGRT 190
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247
ERP+H NR +++ ++ L IPVIANGGSK+I + +F
Sbjct: 191 IEERPQHPNRNHVLKQISARLSIPVIANGGSKDIQKHSDIF 231
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 249 LNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSKF 306
+ CAFLRN Y + +LPKT L K R ++P Y T Q KLF S+VTV+G++Y S F
Sbjct: 368 MRCAFLRNSYITDSELPKTRLLKWTKENRKKMPVYNTRQESKLFCSVVTVDGRKYGSSF 426
>gi|427789545|gb|JAA60224.1| Putative trna-dihydrouridine synthase [Rhipicephalus pulchellus]
Length = 451
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/219 (59%), Positives = 168/219 (76%), Gaps = 1/219 (0%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+N++Y NKIILAPMVR+ TLP RLLAL YGADLVY+EEL+D++L+K +R N +L T+DF
Sbjct: 3 SNVDYRNKIILAPMVRIGTLPMRLLALHYGADLVYTEELIDYRLLKCQRIENKVLGTVDF 62
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
VD D +VFRTC +EK + ILQIGT +P+RA++ AK VE DVA ID+NMGCPK+FS+ G
Sbjct: 63 VDD-DHQIVFRTCEKEKGRNILQIGTCNPDRAVQVAKLVEKDVAGIDVNMGCPKEFSIKG 121
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALL+ D ILT L+ + +PV+CKIRV DT+AL K +E+ G+ AIGVHG
Sbjct: 122 GMGAALLTQTDKVKAILTALVQSTELPVTCKIRVLEKLEDTLALGKLIESTGVKAIGVHG 181
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
RTK ERP+H NR +I+ L +H+ IP+IANGGS EI Y
Sbjct: 182 RTKEERPQHANRNAVIKALAEHVNIPIIANGGSGEIACY 220
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSK 305
V+ + F+RN + + LPKT+L + + P Y+T EK FRS+V V+ K+Y+S
Sbjct: 353 VWQMEAKFVRNMFEMANLPKTVLINWTRRNNYPHPFYKTESMEKSFRSVVLVDRKKYSST 412
Query: 306 F 306
+
Sbjct: 413 Y 413
>gi|346472687|gb|AEO36188.1| hypothetical protein [Amblyomma maculatum]
Length = 451
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/218 (60%), Positives = 167/218 (76%), Gaps = 1/218 (0%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
+I+Y NK+ILAPMVR+ TLP RLLAL YGADLVY+EEL+D++L+K +R N +L T+DFV
Sbjct: 4 SIDYENKVILAPMVRIGTLPMRLLALHYGADLVYTEELIDYRLLKCQRIDNKVLGTVDFV 63
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
D D +VFRTC +EK + ILQIGT +PERA++ AK VE DVA ID+NMGCPK+FS+ GG
Sbjct: 64 DD-DHQIVFRTCEKEKGRNILQIGTCNPERAVQVAKLVERDVAGIDVNMGCPKEFSIKGG 122
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
MGAALL+ + +ILT L+ + +PV+CKIRV ADT+AL K +E+ G+ AI VHGR
Sbjct: 123 MGAALLTQAEKVKDILTALVQSTDLPVTCKIRVLEKLADTLALGKLIESTGVKAIAVHGR 182
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
TK ERP+H NR +I+ L H+ IPVIANGGS EI Y
Sbjct: 183 TKEERPQHANRNAVIKALAGHVGIPVIANGGSGEITCY 220
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSK 305
V+ + F+RN + + LPKT+L + + P Y+T EK FRS+V V+ K+Y+S
Sbjct: 353 VWQMEAKFVRNMFGMANLPKTVLINWTRKNNYPHPFYKTESMEKSFRSVVLVDRKRYSST 412
Query: 306 F 306
+
Sbjct: 413 Y 413
>gi|405966201|gb|EKC31509.1| tRNA-dihydrouridine synthase 2-like protein [Crassostrea gigas]
Length = 513
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 127/213 (59%), Positives = 168/213 (78%), Gaps = 1/213 (0%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y NK ILAPMVR+ TLP RLLA+ YGADLVY EE++D K++K++R ND L T DFV
Sbjct: 8 YENKTILAPMVRVGTLPMRLLAVKYGADLVYCEEIIDFKILKSKRVENDALGTTDFVLS- 66
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
DG+++FRT P+EK+K+I QIGTAD +RAL+AA+++E V+ +D+NMGCPK+FS+ GGMGA
Sbjct: 67 DGTIIFRTHPQEKDKLIFQIGTADAKRALKAAQRIEDLVSGVDVNMGCPKEFSIKGGMGA 126
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALLS P+ ILTTL++ LS+PV+CKIR+ DT+ L K +E+ G+ A+GVHGRTK
Sbjct: 127 ALLSQPEKIKEILTTLVNGLSVPVTCKIRILPELEDTLKLVKLIESTGVSALGVHGRTKE 186
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
ERPRH NR +I+T+ + L IPVIANGGSKE++
Sbjct: 187 ERPRHPNRNNIIQTIAESLSIPVIANGGSKEVI 219
>gi|157131542|ref|XP_001655871.1| tRNA-dihydrouridine synthase [Aedes aegypti]
gi|108871488|gb|EAT35713.1| AAEL012140-PA [Aedes aegypti]
Length = 461
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/254 (51%), Positives = 179/254 (70%), Gaps = 17/254 (6%)
Query: 24 QANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTID 83
+ ++Y+NK+ILAPMVR+ TLP RLLAL +GAD+VY+EE++D KL+K+ER+VND+L T+D
Sbjct: 2 KQTLDYANKVILAPMVRVGTLPMRLLALSFGADIVYTEEIIDWKLLKSERRVNDVLKTVD 61
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
+VD DG+++FRTC +E+ K++LQ+GTA+ ERAL+ K++ D+A +D+NMGCPK FS+
Sbjct: 62 YVDKTDGTIIFRTCEQERGKVVLQLGTANAERALQVGLKLQGDIAGLDVNMGCPKDFSIK 121
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
GGMG ALL + A IL TL+ NLSIPV+CKIR+ DTI + LE+ GI AI VH
Sbjct: 122 GGMGVALLYDLERAKGILKTLVDNLSIPVTCKIRIMPQLEDTIRTVQELESTGIAAIAVH 181
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI---------VDYGGVFSL----- 249
GRTK ERPRH ++IR + + KIPVIANGGS+E+ D G S+
Sbjct: 182 GRTKVERPRHPVHPDVIREVAKIAKIPVIANGGSQEMNKRSDILKFRDACGASSVMVARA 241
Query: 250 ---NCAFLRNHYPV 260
NC+ R+ P+
Sbjct: 242 AQWNCSIFRDEGPL 255
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 10/107 (9%)
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPV 260
G+ GR +A PR E K + NG ++++++ N +F+R +Y
Sbjct: 328 GIQGRRQAA-PRIAEDDEQDENCPS--KKAKVENGIGEDVIEH------NISFIRVNYND 378
Query: 261 E-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSKF 306
+ +LPK+ LY + ++PKYE + +KLFR++V V ++Y+S F
Sbjct: 379 DGELPKSKLYIYTVRNNLKLPKYEVIHKDKLFRAIVQVGDEKYSSSF 425
>gi|195045040|ref|XP_001991926.1| GH12926 [Drosophila grimshawi]
gi|193901684|gb|EDW00551.1| GH12926 [Drosophila grimshawi]
Length = 460
Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 122/214 (57%), Positives = 166/214 (77%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK+ILAPMVR+ TLP RLLAL+ GAD+VY+EEL+D KL+K+ R+ N L T+DFVD
Sbjct: 7 LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELIDLKLIKSIRRPNPALGTVDFVD 66
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P DG+++FRTCP E +K++LQ+GT+D RAL K V+ D+A +DINMGCPK+FS+ GGM
Sbjct: 67 PSDGTIIFRTCPLETSKVVLQMGTSDAARALAVGKLVQCDIAGLDINMGCPKEFSIKGGM 126
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD A +IL TL S L IP++CKIR+ + DTI L ++L A GI AIG+H RT
Sbjct: 127 GAALLAEPDKAAHILRTLCSQLDIPITCKIRILPDPMDTINLVQKLAATGIAAIGIHART 186
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
+ ERP+HR +++R + + IP+IANGGS+E+
Sbjct: 187 RDERPQHRPHPDVLRAVASAVDIPIIANGGSREM 220
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 242 DYGGVFSLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGK 300
+Y GV S AFLR+ Y + +LPKT+LY H + P YET + +KLFR++ + +G+
Sbjct: 359 EYEGVISRKMAFLRSTYTSDTQLPKTVLYVHAGRLGKQPPCYETQRCDKLFRAICSYDGQ 418
Query: 301 QYTSKF 306
+Y+S F
Sbjct: 419 RYSSSF 424
>gi|194770353|ref|XP_001967258.1| GF15959 [Drosophila ananassae]
gi|190614534|gb|EDV30058.1| GF15959 [Drosophila ananassae]
Length = 460
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/228 (54%), Positives = 172/228 (75%), Gaps = 2/228 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK+ILAPMVR+ TLP RLLAL+ GAD+VY+EELVD KL+K+ R+ N L T+DFVD
Sbjct: 7 LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDLKLIKSIRRHNPALGTVDFVD 66
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P DG++VFRTC +E ++++LQ+GT+D +RAL K ++ D++ +DINMGCPK+FS+ GGM
Sbjct: 67 PSDGTIVFRTCAQETSRLVLQMGTSDADRALAVGKLLQRDISGLDINMGCPKEFSIKGGM 126
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLS PD A IL TL SNL IPV+CKIR+ + DTI L ++L GI AIG+H RT
Sbjct: 127 GAALLSEPDKAAVILRTLCSNLDIPVTCKIRILPDVDDTIRLVQKLADTGIAAIGIHART 186
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
+ ERP+H+ +++R + Q + IP+IANGGS+++ Y + F +C
Sbjct: 187 RDERPQHKPHPDVLRAVAQAVSIPIIANGGSRDMHKYEDLRKFQEDCG 234
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 189 CKRLEA-CGIIAIGVHGRTKAERPR-----HRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
C+ L+ C I +G + R K + + R +E + LK+ AN E
Sbjct: 303 CQTLQQICEIWHLGDYCRRKQKELQTLGNSGRADVEPPEAQAKRLKLEEAANAIEDE--- 359
Query: 243 YGGVFSLNCAFLRNHYPVEK-LPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQ 301
Y GV N FLR+ YP + LPKT LY H P YET Q +KLFR++ + +G++
Sbjct: 360 YAGVICRNMPFLRSTYPSDNHLPKTQLYVHAGKAGKNPPGYETQQCDKLFRAICSYDGQR 419
Query: 302 YTSKF 306
++S F
Sbjct: 420 FSSTF 424
>gi|260834651|ref|XP_002612323.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae]
gi|229297700|gb|EEN68332.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae]
Length = 444
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 168/219 (76%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ +NY++K++LAPMVR+ TLP RLLALDYGAD+VY EEL+DH +++ +R N+LL+TIDF
Sbjct: 10 SRLNYADKVMLAPMVRIGTLPARLLALDYGADVVYCEELIDHSMLQCQRVENELLDTIDF 69
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
+ VFRTC +E+++++ Q+GTADPERAL+ AK VE+DVA ID+NMGCPK++S G
Sbjct: 70 IKEQAHHPVFRTCAKERDRVVFQMGTADPERALKVAKLVENDVAGIDVNMGCPKEYSTKG 129
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALLS P+ ILTTL++ +SIPV+CKIR+ DT++L + +E+ G+ A+ VHG
Sbjct: 130 GMGAALLSNPEKIKQILTTLVNGVSIPVTCKIRILPKLEDTLSLVQLIESTGVAAVAVHG 189
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
R K ERPRH ++I+ ++Q + IPVIANGGS I Y
Sbjct: 190 RYKEERPRHPVHADVIKAISQAVSIPVIANGGSGVINRY 228
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 245 GVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQY--EKLFRSLVTVNGKQY 302
G+++++ ++R YP PKTIL + + P YETV+ + F S+VTV K+Y
Sbjct: 354 GIYTMHVEYIRKEYPSAVSPKTILLNWSRTEYLPQPTYETVKQGSDTKFNSVVTVGDKRY 413
Query: 303 TSKF 306
S F
Sbjct: 414 ASSF 417
>gi|195998315|ref|XP_002109026.1| hypothetical protein TRIADDRAFT_2009 [Trichoplax adhaerens]
gi|190589802|gb|EDV29824.1| hypothetical protein TRIADDRAFT_2009, partial [Trichoplax
adhaerens]
Length = 300
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/218 (59%), Positives = 160/218 (73%), Gaps = 1/218 (0%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y N ILAPMVRM TLP RLL+LDYGADLVY EE++DHKLVK +R N++LN+IDFV P
Sbjct: 1 YQNYKILAPMVRMGTLPLRLLSLDYGADLVYCEEIIDHKLVKCKRVENEVLNSIDFVHP- 59
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
DG VFRTC +E +K+ILQ+GTADPERAL AK VE+DVA IDINMGCPK++S GGMGA
Sbjct: 60 DGQCVFRTCRQETDKVILQLGTADPERALLTAKLVENDVAGIDINMGCPKEYSTKGGMGA 119
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL+ P NIL L+ N PV+CKIR+ DT+ L K +E+ G+ A+ +HGR K
Sbjct: 120 ALLTEPQKVYNILKKLVDNCLKPVTCKIRILPKLQDTLDLAKVIESTGVAAVAIHGRLKV 179
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV 246
ERPR ++IRT++ L IPVIANGGS EI + +
Sbjct: 180 ERPRQPVHKDIIRTISNSLSIPVIANGGSLEIKSFSDI 217
>gi|443732654|gb|ELU17289.1| hypothetical protein CAPTEDRAFT_148852 [Capitella teleta]
Length = 503
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 129/229 (56%), Positives = 170/229 (74%), Gaps = 3/229 (1%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
+++Y NK +LAPMVR++TLP RLL LDYGADLVY EE++D K++ ER NDLL T+D+V
Sbjct: 6 SLDYRNKQMLAPMVRVSTLPNRLLCLDYGADLVYCEEIIDFKILNCERVENDLLGTVDYV 65
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
DG++VFRT PRE K++ Q+GT+D +RAL+ K +E D+AA+DINMGCPK+FS+ GG
Sbjct: 66 -WTDGTIVFRTVPRETEKLVFQLGTSDAQRALKVGKMLEKDIAALDINMGCPKEFSIKGG 124
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
MGAALL P+ ILTTL++NLSIPV+CKIR+ DT+AL K +E G+ AI VHGR
Sbjct: 125 MGAALLDQPEKIKEILTTLVANLSIPVTCKIRILPKLEDTLALAKMIEQTGVAAIAVHGR 184
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
T+ ERPRH N ++I + + L IPVIANGGSK I + + F +CA
Sbjct: 185 TREERPRHDNHDDLIAEVAKVLTIPVIANGGSKCIKCHADIESFRSSCA 233
>gi|194895115|ref|XP_001978186.1| GG17837 [Drosophila erecta]
gi|190649835|gb|EDV47113.1| GG17837 [Drosophila erecta]
Length = 473
Score = 263 bits (671), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 126/228 (55%), Positives = 167/228 (73%), Gaps = 2/228 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NKIILAPMVR+ TLP RLLAL+ GAD+VY+EELVD KL+K+ R+ N L T+DFVD
Sbjct: 20 LDYRNKIILAPMVRVGTLPMRLLALEMGADIVYTEELVDLKLIKSIRRPNPALGTVDFVD 79
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P DG++VFRTC +E ++++LQ+GT+D RAL K ++ D++ +DINMGCPK+FS+ GGM
Sbjct: 80 PSDGTIVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGM 139
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD A IL TL S L IPV+CKIR+ + TI L ++L A GI AIG+H RT
Sbjct: 140 GAALLAVPDKAALILRTLCSGLDIPVTCKIRILPDVESTIDLVQKLAATGIAAIGIHART 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
ERP+H E++R + Q + IP+IANGGSK + Y + F L C
Sbjct: 200 SVERPQHAAHPEVLRAVAQAVDIPIIANGGSKNMHCYEDLRKFQLECG 247
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 189 CKRLEA-CGIIAIGVHGRTKAERPR-----HRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
C+ L+ C I +G + R + + R +E L + K+ A + E
Sbjct: 316 CQTLQQICEIWELGDYCRRRQRELKTMGNSGRAEVEPPEALAKRQKLEEAATAIADE--- 372
Query: 243 YGGVFSLNCAFLRNHYPVEK-LPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQ 301
Y GV N FLR+ YP + LPKT LY H P YET Q +KLFRS+ T +G++
Sbjct: 373 YAGVICRNMPFLRSTYPSDNHLPKTQLYVHAGKAGKSPPAYETQQCDKLFRSICTFDGQR 432
Query: 302 YTSKF 306
++S F
Sbjct: 433 FSSSF 437
>gi|45549423|ref|NP_572950.2| CG1434 [Drosophila melanogaster]
gi|45446950|gb|AAF48360.2| CG1434 [Drosophila melanogaster]
gi|162944734|gb|ABY20436.1| GH10289p [Drosophila melanogaster]
Length = 473
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/228 (54%), Positives = 169/228 (74%), Gaps = 2/228 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK+ILAPMVR+ TLP RLLAL+ GAD+VY+EELVD KL+K+ R+ N L T+DFVD
Sbjct: 20 LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLIKSIRRPNPALGTVDFVD 79
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P DG++VFRTC +E ++++LQ+GT+D RAL K ++ D++ +DINMGCPK+FS+ GGM
Sbjct: 80 PSDGTIVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGM 139
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD A +IL TL S L IPV+CKIR+ + TI L ++L A GI AIG+H RT
Sbjct: 140 GAALLADPDKAAHILRTLCSGLDIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHART 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
+ ERP+H E++R + Q + IP+IANGGSK + Y + F + C
Sbjct: 200 RDERPQHPAHPEVLRAVAQAVDIPIIANGGSKNMHCYDDLRKFQMECG 247
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 189 CKRLEA-CGIIAIGVHGRTKAERPR-----HRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
C+ L+ C I +G + R K + R +E L + K+ A + E
Sbjct: 316 CQTLQQICEIWELGDYCRRKQRELKTMGNSGRAEVEPPEALAKRQKLEDAAIAITDE--- 372
Query: 243 YGGVFSLNCAFLRNHYPVEK-LPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQ 301
Y G+ + FLR+ YP + LPKT LY H P YET Q +KLFRS+ T +G++
Sbjct: 373 YDGIICRHMPFLRSTYPSDNHLPKTQLYVHAVKTGKSPPAYETQQCDKLFRSICTYDGQR 432
Query: 302 YTSKF 306
++S F
Sbjct: 433 FSSSF 437
>gi|195132199|ref|XP_002010531.1| GI14629 [Drosophila mojavensis]
gi|193908981|gb|EDW07848.1| GI14629 [Drosophila mojavensis]
Length = 458
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 122/220 (55%), Positives = 166/220 (75%)
Query: 24 QANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTID 83
Q ++Y NKII+APMVR+ TLP RLLAL+ GAD+VY+EELVD KL+K+ R+ N LNTID
Sbjct: 3 QPRLDYRNKIIMAPMVRVGTLPMRLLALEMGADIVYTEELVDLKLIKSLRRPNPALNTID 62
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
FVDP DG++VFRTC E ++++LQ+GT+D RAL K V++D+A +DINMGCPK+FS+
Sbjct: 63 FVDPSDGTIVFRTCSLETSRVVLQLGTSDAARALAVGKLVQNDIAGLDINMGCPKEFSIK 122
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
GGMGAALLS P A +IL TL ++L IP++CKIR+ + +TI L + L A GI AIG+H
Sbjct: 123 GGMGAALLSEPAKAAHILRTLTTHLDIPITCKIRILPDTLETIKLVQELAATGIAAIGIH 182
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
RT+ ERP+H +++R + + IP+IANGGS+ + Y
Sbjct: 183 ARTRDERPQHHPHPDVLRAVASAVDIPIIANGGSRNMHTY 222
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 189 CKRLEA-CGIIAIGVHGRTKAERPRH-----RNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
C+ L+ C I +G + R K + + R + + L + K+ S+++ D
Sbjct: 302 CQTLQQICEIWGLGDYCRRKQQELKEHGNGGRANVILTECLAKRQKLER-----SEDLSD 356
Query: 243 -YGGVFSLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGK 300
Y GV N AFLR+ YP + +LPK +LY + P YET Q +KLFRS+ + +G+
Sbjct: 357 EYEGVICRNMAFLRSTYPSDTQLPKMVLYVLAGKLGKQAPSYETHQCDKLFRSICSYDGQ 416
Query: 301 QYTSKF 306
+++S F
Sbjct: 417 RFSSSF 422
>gi|195166832|ref|XP_002024238.1| GL14922 [Drosophila persimilis]
gi|198468810|ref|XP_002134128.1| GA26573 [Drosophila pseudoobscura pseudoobscura]
gi|194107611|gb|EDW29654.1| GL14922 [Drosophila persimilis]
gi|198146581|gb|EDY72755.1| GA26573 [Drosophila pseudoobscura pseudoobscura]
Length = 463
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/228 (53%), Positives = 169/228 (74%), Gaps = 2/228 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK++LAPMVR+ TLP RLLAL+ GAD+VY+EELVD KL+K+ R+ N L T+DFVD
Sbjct: 10 LDYRNKLMLAPMVRVGTLPMRLLALEMGADIVYTEELVDLKLIKSIRRHNPALGTVDFVD 69
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P DG+VVFRTC E ++++LQ+GT+D RAL K ++ D++ +DINMGCPK+FS+ GGM
Sbjct: 70 PSDGTVVFRTCALETSRLVLQMGTSDATRALAVGKLLQQDISGLDINMGCPKEFSIKGGM 129
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD A IL TL SNL IPV+CKIR+ + DTI+L ++L GI AIG+H RT
Sbjct: 130 GAALLADPDKAALILRTLCSNLDIPVTCKIRILPDLDDTISLVQKLADTGIAAIGIHART 189
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
+ ERP+H +++R + + + IP+IANGGS+ + Y + F L C
Sbjct: 190 RDERPQHPPHPDVLRAVAKAVSIPIIANGGSRNVQKYEDILKFQLECG 237
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 189 CKRLEA-CGIIAIGVHGRTKAERPR-----HRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
C+ L+ C I +G + R K + R R +E + K+ A + E
Sbjct: 306 CQTLQQICEIWHLGDYCRRKQKELRTLGNSGRAEVEPPEAQAKRQKLEEAATAITDE--- 362
Query: 243 YGGVFSLNCAFLRNHYPVEK-LPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQ 301
Y GV + FLR+ Y + LPKT+LY + P YET Q +KLFR++ + + ++
Sbjct: 363 YEGVICRSMPFLRSTYASDNHLPKTVLYVYAGKMGKSPPAYETQQCDKLFRAICSYDDQR 422
Query: 302 YTSKF 306
Y+S F
Sbjct: 423 YSSTF 427
>gi|195478541|ref|XP_002100554.1| GE17129 [Drosophila yakuba]
gi|194188078|gb|EDX01662.1| GE17129 [Drosophila yakuba]
Length = 473
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/228 (54%), Positives = 168/228 (73%), Gaps = 2/228 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK+ILAPMVR+ TLP RLLAL+ GAD+VY+EELVD KL+K+ R+ N L T+DFVD
Sbjct: 20 LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDLKLIKSIRRPNPALGTVDFVD 79
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P DG++VFRTC +E ++++LQ+GT+D RAL K ++ D++ +DINMGCPK+FS+ GGM
Sbjct: 80 PSDGTIVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGM 139
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD A IL TL S L IPV+CKIR+ + TI L ++L A GI AIG+H RT
Sbjct: 140 GAALLADPDKAALILRTLCSGLDIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHART 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
+ ERP+H E++R + Q + IP+IANGGSK + Y + F L C
Sbjct: 200 RDERPQHSAHPEVLRAVAQAVDIPIIANGGSKNMHCYEDLRKFQLECG 247
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 189 CKRLEA-CGIIAIGVHGRTKAERPR-----HRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
C+ L+ C I +G + R K + R +E L + K+ A + E
Sbjct: 316 CQTLQQICEIWELGDYCRRKQRELKTMGNSGRAEVEPPEALAKRQKLEEAATAITDE--- 372
Query: 243 YGGVFSLNCAFLRNHYPVEK-LPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQ 301
Y GV N FLR+ YP + LPKT LY H P YET Q +KLFRS+ + +G++
Sbjct: 373 YAGVICRNMPFLRSTYPSDNHLPKTQLYVHAGKAGKSPPAYETQQCDKLFRSICSYDGQR 432
Query: 302 YTSKF 306
++S F
Sbjct: 433 FSSSF 437
>gi|17863006|gb|AAL39980.1| SD08006p [Drosophila melanogaster]
Length = 460
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 124/228 (54%), Positives = 169/228 (74%), Gaps = 2/228 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK+ILAPMVR+ TLP RLLAL+ GAD+VY+EELVD KL+K+ R+ N L T+DFVD
Sbjct: 7 LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLIKSIRRPNPALGTVDFVD 66
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P DG++VFRTC +E ++++LQ+GT+D RAL K ++ D++ +DINMGCPK+FS+ GGM
Sbjct: 67 PSDGTIVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGM 126
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD A +IL TL S L IPV+CKIR+ + TI L ++L A GI AIG+H RT
Sbjct: 127 GAALLADPDKAAHILRTLCSGLDIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHART 186
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
+ ERP+H E++R + Q + IP+IANGGSK + Y + F + C
Sbjct: 187 RDERPQHPAHPEVLRAVAQAVDIPIIANGGSKNMHCYDDLRKFQMECG 234
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 189 CKRLEA-CGIIAIGVHGRTKAERPR-----HRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
C+ L+ C I +G + R K + R +E L + K+ A + E
Sbjct: 303 CQTLQQICEIWELGDYCRRKQRELKTMGNSGRAEVEPPEALAKRQKLEDAAIAITDE--- 359
Query: 243 YGGVFSLNCAFLRNHYPVEK-LPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQ 301
Y G+ + FLR+ YP + LPKT LY H P YET Q +KLFRS+ T +G++
Sbjct: 360 YDGIICRHMPFLRSTYPSDNHLPKTQLYVHAVKTGKSPPAYETQQCDKLFRSICTYDGQR 419
Query: 302 YTSKF 306
++S F
Sbjct: 420 FSSSF 424
>gi|195352556|ref|XP_002042778.1| GM17665 [Drosophila sechellia]
gi|194126809|gb|EDW48852.1| GM17665 [Drosophila sechellia]
Length = 473
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 124/228 (54%), Positives = 168/228 (73%), Gaps = 2/228 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK+ILAPMVR+ TLP RLLAL+ GAD+VY+EELVD KL+++ R+ N L T+DFVD
Sbjct: 20 LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDLKLIRSIRRPNPALGTVDFVD 79
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P DG++VFRTC +E ++++LQ+GT+D RAL ++ D++ +DINMGCPK+FS+ GGM
Sbjct: 80 PSDGTIVFRTCAQETSRLVLQMGTSDARRALAVGMLLQRDISGLDINMGCPKEFSIKGGM 139
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD A NIL TL S L IPV+CKIR+ + TI L ++L A GI AIG+H RT
Sbjct: 140 GAALLADPDKAANILRTLCSGLDIPVTCKIRILPDVERTIDLVQKLAATGIAAIGIHART 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
+ ERP+H E++R + Q + IP+IANGGSK + Y + F L C
Sbjct: 200 RDERPQHPAHPEVLRAVAQAVDIPIIANGGSKNMHCYEDLRKFQLECG 247
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 189 CKRLEA-CGIIAIGVHGRTKAERPR-----HRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
C+ L+ C I +G + R K R R +E +L + K+ + +I D
Sbjct: 316 CQTLQQICEIWELGEYCRRKQRELRTMGNSGRAEVEPPESLAKRQKL----EDAAIDIPD 371
Query: 243 -YGGVFSLNCAFLRNHYPVEK-LPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGK 300
Y G+ + FLR+ YP + LPKT LY H P YET Q +KLFRS+ T + +
Sbjct: 372 GYEGIICRHMPFLRSTYPSDNHLPKTQLYVHAVKAGKSPPAYETQQCDKLFRSICTYDDQ 431
Query: 301 QYTSKF 306
+++S +
Sbjct: 432 RFSSSY 437
>gi|397487030|ref|XP_003814617.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
1 [Pan paniscus]
gi|397487032|ref|XP_003814618.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
2 [Pan paniscus]
gi|410209166|gb|JAA01802.1| dihydrouridine synthase 2-like, SMM1 homolog [Pan troglodytes]
gi|410247418|gb|JAA11676.1| dihydrouridine synthase 2-like, SMM1 homolog [Pan troglodytes]
gi|410297398|gb|JAA27299.1| dihydrouridine synthase 2-like, SMM1 homolog [Pan troglodytes]
gi|410330847|gb|JAA34370.1| dihydrouridine synthase 2-like, SMM1 homolog [Pan troglodytes]
Length = 493
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLYYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPKQ+S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 219
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|8923374|ref|NP_060273.1| tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform 1 [Homo
sapiens]
gi|419635745|ref|NP_001258691.1| tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform 1 [Homo
sapiens]
gi|73620832|sp|Q9NX74.1|DUS2L_HUMAN RecName: Full=tRNA-dihydrouridine(20) synthase [NAD(P)+]-like;
AltName: Full=Up-regulated in lung cancer protein 8;
Short=URLC8; AltName: Full=tRNA-dihydrouridine synthase
2-like; Short=hDUS2
gi|7020473|dbj|BAA91143.1| unnamed protein product [Homo sapiens]
gi|16306804|gb|AAH06527.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Homo
sapiens]
gi|71006842|dbj|BAE07219.1| up-regulated in lung cancer 8 [Homo sapiens]
gi|119603613|gb|EAW83207.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119603614|gb|EAW83208.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119603615|gb|EAW83209.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|158254588|dbj|BAF83267.1| unnamed protein product [Homo sapiens]
gi|312152458|gb|ADQ32741.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
[synthetic construct]
Length = 493
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPKQ+S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 219
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|410050487|ref|XP_001166768.2| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
4 [Pan troglodytes]
Length = 518
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 29 NSLSLYYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 88
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPKQ+S
Sbjct: 89 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYST 147
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 148 KGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 207
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 208 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 244
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 373 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 432
Query: 300 KQYTSKF 306
++Y S
Sbjct: 433 QKYQSTL 439
>gi|195566706|ref|XP_002106918.1| GD17163 [Drosophila simulans]
gi|194204313|gb|EDX17889.1| GD17163 [Drosophila simulans]
Length = 460
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/228 (54%), Positives = 168/228 (73%), Gaps = 2/228 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK+ILAPMVR+ TLP RLLAL+ GAD+VY+EELVD KL+++ R+ N L T+DFVD
Sbjct: 7 LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDLKLLRSIRRPNPALGTVDFVD 66
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P DG++VFRTC +E ++++LQ+GT+D RAL ++ D++ +DINMGCPK+FS+ GGM
Sbjct: 67 PSDGTIVFRTCAQETSRLVLQMGTSDARRALAVGMLLQRDISGLDINMGCPKEFSIKGGM 126
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD A NIL TL S L IPV+CKIR+ + TI L ++L A GI AIG+H RT
Sbjct: 127 GAALLADPDKAANILRTLCSGLDIPVTCKIRILPDVERTIDLVQKLAATGIAAIGIHART 186
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
+ ERP+H E++R + Q + IP+IANGGSK + Y + F L C
Sbjct: 187 RDERPQHPAHPEVLRAVAQAVDIPIIANGGSKNMHCYEDLRKFQLECG 234
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 243 YGGVFSLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQ 301
+ G+ + FLR+ YP + +LPKT LY H P YET Q +KLFRS+ T + ++
Sbjct: 360 FDGIICRHMPFLRSTYPSDNQLPKTQLYVHAVKAGKSPPAYETQQCDKLFRSICTYDDQR 419
Query: 302 YTSKF 306
++S +
Sbjct: 420 FSSSY 424
>gi|432093601|gb|ELK25583.1| tRNA-dihydrouridine synthase 2-like protein [Myotis davidii]
Length = 536
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 128/222 (57%), Positives = 166/222 (74%), Gaps = 2/222 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 47 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTV 106
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC REK++++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 107 DFVAP-DDRVVFRTCQREKSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 165
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ S PV+CKIR+ + DT+ L KR+E GI AI V
Sbjct: 166 KGGMGAALLSDPDKIEKILSTLVKGTSRPVTCKIRILPSLEDTLNLVKRIERTGIAAIAV 225
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243
HGR + ERP+H E I+ + + L IPVIANGGS + I DY
Sbjct: 226 HGRKREERPQHPVSCETIKAIAETLSIPVIANGGSHDHIQDY 267
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R Y + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 391 DTSGVIKMAVKFDRRAYSPQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFCSVVTVAE 450
Query: 300 KQYTS 304
++Y S
Sbjct: 451 QKYQS 455
>gi|402908813|ref|XP_003917129.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
1 [Papio anubis]
gi|402908815|ref|XP_003917130.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
2 [Papio anubis]
gi|355710317|gb|EHH31781.1| tRNA-dihydrouridine synthase 2-like protein [Macaca mulatta]
gi|355756891|gb|EHH60499.1| tRNA-dihydrouridine synthase 2-like protein [Macaca fascicularis]
Length = 493
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 164/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ + PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 219
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|90083447|dbj|BAE90806.1| unnamed protein product [Macaca fascicularis]
Length = 493
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 164/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ + PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 219
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGVIKMAVKFDRRAYPAQIPPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|417401854|gb|JAA47792.1| Putative trna-dihydrouridine synthase [Desmodus rotundus]
Length = 493
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 126/222 (56%), Positives = 167/222 (75%), Gaps = 2/222 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+++++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCKREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E+ GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTCRPVTCKIRILPSLEDTLSLVKRIESTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243
HGR + ERP+H E I+ + + L IPVIANGGS + I DY
Sbjct: 183 HGRKREERPQHPVSCETIKAIAETLSIPVIANGGSHDHIKDY 224
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R Y + PK L C+ ++ P YETVQ ++LF SLVTV G
Sbjct: 348 DPSGVIKMAVKFDRRAYSPQITPKMCLLEWCRREKVAQPVYETVQRPLDRLFCSLVTVAG 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|354484304|ref|XP_003504329.1| PREDICTED: tRNA-dihydrouridine synthase 2 [Cricetulus griseus]
Length = 493
Score = 259 bits (663), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 164/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ + PV+CKIR+ + DT+ L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGIHKPVTCKIRILPSLEDTLNLVKRIERTGISAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+IR + + L IPVIANGGS +
Sbjct: 183 HGRNREERPQHPVSCEVIRAIAETLSIPVIANGGSHD 219
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D G+ + F R YP + PK L C+ ++ P YETVQ +++F S+VTV
Sbjct: 348 DTSGIIKMAIKFDRRAYPPQITPKMCLLEWCRREKLPQPMYETVQRPIDRMFCSVVTVAE 407
Query: 300 KQYTSKF 306
++Y S
Sbjct: 408 QKYQSTL 414
>gi|296231397|ref|XP_002761126.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
1 [Callithrix jacchus]
gi|296231399|ref|XP_002761127.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
2 [Callithrix jacchus]
Length = 493
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 219
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R Y + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGVIKMAVKFDRRAYSAQITPKMCLLEWCRREKLPQPMYETVQRPIDRLFSSIVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|327276491|ref|XP_003223003.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Anolis
carolinensis]
Length = 488
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/219 (56%), Positives = 165/219 (75%), Gaps = 1/219 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ + NK ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+V+ +R VN++L T+
Sbjct: 4 NTTSLCFRNKAILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMVQCKRIVNEVLGTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P + VVFRTC REK+ ++ Q+GTAD ERAL AK VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-NERVVFRTCEREKDSVVFQMGTADAERALAVAKLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD +ILTTL+ + PV+CKIR+ + +TI+L KR+E G+ AI V
Sbjct: 123 KGGMGAALLSHPDKIESILTTLVKGVCKPVTCKIRILPTKEETISLVKRIERTGVAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
HGR K ERP+H ++I+ +++ + IPVIANGGS + +
Sbjct: 183 HGRKKEERPQHSVHCDVIKAISETVSIPVIANGGSHDFI 221
>gi|348572540|ref|XP_003472050.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Cavia porcellus]
Length = 493
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/215 (57%), Positives = 163/215 (75%), Gaps = 1/215 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NNLSLCYQNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC +E+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEKEQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVRGTCRPVTCKIRILPSLEDTLSLVKRIEKTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237
HGR + ERP+H E+I+ + + L IPVIANGGS
Sbjct: 183 HGRKREERPQHPVSCEIIKAIAETLSIPVIANGGS 217
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV L F R Y + PK L C+ ++ P YETVQ ++LF S VTV
Sbjct: 348 DTSGVIKLAVKFDRRQYSPQITPKMCLLEWCRREKLSQPVYETVQRPLDRLFCSTVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|410907696|ref|XP_003967327.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
[Takifugu rubripes]
Length = 511
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ +++SN L PMVR+ TLP RLLALDYGAD+VY EEL+D K+ + R VN++L T+DF
Sbjct: 4 SRLSFSNINALGPMVRVGTLPMRLLALDYGADVVYCEELIDIKMAQCHRVVNEVLETVDF 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
V P D V+FRTC REKNK++ Q+GTADP+RA+ A+ VE DVAAID+NMGCPK++S G
Sbjct: 64 VAP-DERVMFRTCEREKNKVVFQMGTADPDRAVTVAQLVERDVAAIDVNMGCPKEYSTKG 122
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALL+ PD IL L++ +SIPV+CKIR+ + DTI+L +R+E G+ AI VHG
Sbjct: 123 GMGAALLADPDKIEAILGKLVTGVSIPVTCKIRILPSLEDTISLVQRIEKTGVAAIAVHG 182
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
R K ERPRH + IRT+ + + IPVIANGGS ++V
Sbjct: 183 RFKEERPRHPVHCDYIRTIARSVSIPVIANGGSLDLV 219
>gi|291390365|ref|XP_002711677.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog
[Oryctolagus cuniculus]
Length = 493
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 162/216 (75%), Gaps = 1/216 (0%)
Query: 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNT 81
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ R VN++L+T
Sbjct: 3 GNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCRRVVNEVLST 62
Query: 82 IDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFS 141
+DFV P D VVFRTC RE+++++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 63 VDFVAP-DDRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYS 121
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIG 201
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI
Sbjct: 122 TKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIEKTGIAAIA 181
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237
VHGR + ERP+H E+I+ + + L IPVIANGGS
Sbjct: 182 VHGRKREERPQHPVSCEVIKAIAETLSIPVIANGGS 217
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R Y + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGVIKMAVKFDRRAYAPQITPKMCLLEWCRREKLAQPTYETVQRPLDRLFCSVVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|343958368|dbj|BAK63039.1| tRNA-dihydrouridine synthase 2-like protein [Pan troglodytes]
Length = 493
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 162/217 (74%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLYYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPKQ+S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGM AALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMEAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 219
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|149699255|ref|XP_001498775.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 1 [Equus
caballus]
Length = 493
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/215 (57%), Positives = 162/215 (75%), Gaps = 1/215 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE++++I Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSRVIFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237
HGR + ERP+H E I+ + + L IPVIANGGS
Sbjct: 183 HGRKREERPQHPVSCEAIKAIAETLSIPVIANGGS 217
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D G+ + F R Y + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGIIKMAVKFDRRAYSPQVTPKMCLLEWCRREKLAQPVYETVQRPLDRLFCSVVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|115495449|ref|NP_001068887.1| tRNA-dihydrouridine synthase 2-like [Bos taurus]
gi|111308646|gb|AAI20343.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Bos
taurus]
gi|296477934|tpg|DAA20049.1| TPA: dihydrouridine synthase 2-like, SMM1 homolog [Bos taurus]
gi|440905420|gb|ELR55797.1| tRNA-dihydrouridine synthase 2-like protein [Bos grunniens mutus]
Length = 493
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 162/217 (74%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EELVD K+++ +R VN+ L+T+
Sbjct: 4 NNLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELVDLKMLQCKRVVNEALSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE++K++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSKVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E I+ + + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEAIKAIAETLSIPVIANGGSHD 219
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D G+ + F R Y + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGIIKMAIKFDRRAYSPQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFCSVVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|292628574|ref|XP_001342694.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Danio rerio]
Length = 504
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 124/213 (58%), Positives = 157/213 (73%), Gaps = 1/213 (0%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
+ K ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+ + ER ND+L TIDFV P
Sbjct: 15 FRQKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMAQCERVENDVLQTIDFVAP- 73
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
D V+FRTC +E +++ Q+GTADPERAL AK VE+DVAA+D+NMGCPK++S GGMG+
Sbjct: 74 DERVMFRTCSKESGRVVFQMGTADPERALAVAKLVENDVAAVDVNMGCPKEYSTKGGMGS 133
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALLS P+ ILTTL+ +S PV+CKIR+ DT+ L KR+E G+ AI VHGR K
Sbjct: 134 ALLSDPEKIEAILTTLVKGISKPVTCKIRILSTIEDTVNLVKRIEKTGVAAIAVHGRMKD 193
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
ERPRH + I+ + Q + +PVIANGGS +IV
Sbjct: 194 ERPRHPVHCDYIQAVAQSVSVPVIANGGSSDIV 226
>gi|357623751|gb|EHJ74777.1| putative tRNA-dihydrouridine synthase [Danaus plexippus]
Length = 438
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 118/212 (55%), Positives = 160/212 (75%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97
MVR+ TLP RLLAL +GAD+VYSEEL+D K ++++R+ N++L+T+DFVD DG++VFRT
Sbjct: 1 MVRIGTLPMRLLALRFGADIVYSEELIDWKFLRSKRRYNEILHTVDFVDQTDGTIVFRTS 60
Query: 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157
EK K++LQ+GT P+RAL+ AK VE DVAAIDINMGCPK+FS+ GGMG AL+ D A
Sbjct: 61 EEEKEKVVLQLGTCSPDRALKVAKLVEKDVAAIDINMGCPKEFSIKGGMGVALMQNLDKA 120
Query: 158 CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI 217
C IL TL+ NLSIPV+CKIR+ + T+ + ++L GI AI +HGRT+ ERP+H
Sbjct: 121 CCILKTLVDNLSIPVTCKIRILDTKEKTLEVVQKLAQTGIKAIAIHGRTRDERPQHAVHH 180
Query: 218 EMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
++I+ ++Q++ IPVIANGGSKEI Y +
Sbjct: 181 DIIKYVSQNISIPVIANGGSKEIEKYADILKF 212
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 241 VDYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGK 300
++ VF + F+R +Y LPK+ L+A ++VP YET Q EKLFRS++T+NGK
Sbjct: 337 INLNDVFQMKVCFIRANYNDLNLPKSQLHAWVGKNGYKVPTYETHQVEKLFRSILTLNGK 396
Query: 301 QYTSKF 306
+YTS F
Sbjct: 397 KYTSTF 402
>gi|335289247|ref|XP_003355825.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Sus scrofa]
Length = 493
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 124/215 (57%), Positives = 161/215 (74%), Gaps = 1/215 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN+ L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEALSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+++++ Q+GT+D ERAL AK VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSRVVFQMGTSDAERALAVAKLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRLLPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237
HGR + ERP+H E I+ + + L IPVIANGGS
Sbjct: 183 HGRKREERPQHPVSCEAIKAIAETLSIPVIANGGS 217
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R Y + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGVIKMAVKFDRRAYSPQITPKMCLLEWCRREKLAQPVYETVQRPMDRLFCSVVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|426242543|ref|XP_004015132.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
1 [Ovis aries]
Length = 493
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 162/217 (74%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN+ L+T+
Sbjct: 4 NNLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEALSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE++K++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSKVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E I+ + + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEAIKAIAETLSIPVIANGGSHD 219
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D G+ + F R Y + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGIIKMAIKFDRRAYSPQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSVVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 RKYQS 412
>gi|110625595|ref|NP_079794.1| tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Mus musculus]
gi|73620836|sp|Q9D7B1.1|DUS2L_MOUSE RecName: Full=tRNA-dihydrouridine(20) synthase [NAD(P)+]-like;
AltName: Full=tRNA-dihydrouridine synthase 2-like
gi|12844161|dbj|BAB26260.1| unnamed protein product [Mus musculus]
gi|109733553|gb|AAI16937.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus]
gi|109733887|gb|AAI16935.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus]
gi|148679394|gb|EDL11341.1| mCG20459, isoform CRA_b [Mus musculus]
Length = 493
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+++++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT+ L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+IR + + L IPVIANGGS +
Sbjct: 183 HGRNRDERPQHPVSCEVIRAIAETLSIPVIANGGSHD 219
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D G+ + F R YP + PK L C+ ++ P YETVQ +++F S+VTV
Sbjct: 348 DTSGIIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAE 407
Query: 300 KQYTSKF 306
++Y S
Sbjct: 408 QKYQSTL 414
>gi|157818491|ref|NP_001099651.1| tRNA-dihydrouridine synthase 2-like [Rattus norvegicus]
gi|149038072|gb|EDL92432.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
(predicted), isoform CRA_a [Rattus norvegicus]
gi|165971659|gb|AAI58729.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
[Rattus norvegicus]
Length = 493
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 162/217 (74%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCRRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+++++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT+ L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+IR + + L IPVIANGGS +
Sbjct: 183 HGRNRDERPQHPVSCEVIRAIAETLSIPVIANGGSHD 219
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D G+ + F R YP + PKT L C+ ++ P YETVQ +++F S+VTV
Sbjct: 348 DTSGIIKMAIRFDRRAYPPQITPKTCLLEWCRREKLPQPVYETVQRPIDRMFCSVVTVAE 407
Query: 300 KQYTSKF 306
++Y S
Sbjct: 408 QKYQSTL 414
>gi|348504024|ref|XP_003439562.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Oreochromis
niloticus]
Length = 498
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/213 (56%), Positives = 158/213 (74%), Gaps = 1/213 (0%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+++SN LAPMVR+ TLP RLLALDYGAD+VY EEL+D K+ + +R VN++L T+DF
Sbjct: 4 GRLSFSNITALAPMVRVGTLPMRLLALDYGADVVYCEELIDIKMAQCQRVVNEVLETVDF 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
V P D V+FRTC REK ++ Q+GTADP+RAL A+ VE DVAA+D+NMGCPK++S G
Sbjct: 64 VAP-DDRVMFRTCEREKGNVVFQMGTADPDRALAVARLVEKDVAAVDVNMGCPKEYSTKG 122
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALLS PD IL TL++ +SIPV+CKIR+ + +TI+L +R+E G A+ VHG
Sbjct: 123 GMGAALLSDPDKIEAILRTLVTGVSIPVTCKIRILPSLEETISLVRRIEKTGAAAVAVHG 182
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237
R K ERPRH + I+ + Q + IPVIANGGS
Sbjct: 183 RFKEERPRHPVHCDYIQAVAQAVSIPVIANGGS 215
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 244 GGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQ 301
G V ++ F R YP + PK L + ++ E P+YETVQ ++ F+S VTV K+
Sbjct: 345 GDVTTMAVKFERREYPPQITPKMFLLEWSRKEKLEQPQYETVQRAQDRAFQSTVTVAQKK 404
Query: 302 YTSKF 306
Y S
Sbjct: 405 YRSSL 409
>gi|344290919|ref|XP_003417184.1| PREDICTED: tRNA-dihydrouridine synthase 2 [Loxodonta africana]
Length = 493
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/217 (56%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NNFSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+++++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCAREQSRVVFQLGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTCRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + +RP+H E I+ + + L IPVIANGGS +
Sbjct: 183 HGRKREQRPQHPVSCEAIKAIAETLSIPVIANGGSHD 219
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 236 GSKEIVDYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRS 293
S+ D GV + F R YP + PK L C+ ++ P YETVQ ++LF S
Sbjct: 342 ASEPAEDTSGVIKIAVKFDRRAYPSQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFCS 401
Query: 294 LVTVNGKQYTS 304
+VTV ++Y S
Sbjct: 402 VVTVAEQKYQS 412
>gi|347964635|ref|XP_316826.4| AGAP000856-PA [Anopheles gambiae str. PEST]
gi|333469437|gb|EAA12065.4| AGAP000856-PA [Anopheles gambiae str. PEST]
Length = 506
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/218 (56%), Positives = 161/218 (73%)
Query: 24 QANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTID 83
+++I+Y NK++LAPMVR+ TLP RLLAL+YGADLVY+EE++D KL++ ER N++L TID
Sbjct: 2 KSDIDYRNKLVLAPMVRVGTLPMRLLALEYGADLVYTEEIIDWKLLRAERHTNEVLGTID 61
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
++D DG+VVFRTCP E+ K++LQIGTA ERA+ + +++DVAAID+NMGCPK FS+
Sbjct: 62 YIDTTDGTVVFRTCPHERGKVVLQIGTASAERAVAVGQMMQNDVAAIDVNMGCPKDFSIK 121
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
GGMG ALL A IL L+ + IPV+CKIRV + +T+AL K L++ GI AIGVH
Sbjct: 122 GGMGVALLYDLPRAKAILEGLVQGVRIPVTCKIRVMPDLDETVALAKELQSTGIRAIGVH 181
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
GRTK ERPR I + L IPVIANGGS+ I
Sbjct: 182 GRTKMERPRDPVNEGAIARVANALHIPVIANGGSQSIT 219
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 250 NCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSKF 306
N F+R+++ + LPK+ LY H +YE Q +KLFR+ + +G++YTS F
Sbjct: 376 NVCFIRSNFIDDNSLPKSKLYLHAVRNGLPRAQYEVQQKDKLFRATIRFDGQRYTSSF 433
>gi|432860175|ref|XP_004069428.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Oryzias
latipes]
Length = 496
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 123/229 (53%), Positives = 163/229 (71%), Gaps = 2/229 (0%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ + N LAPMVR+ TLP RLLALDYGAD+VY EEL+D K+ + R VND+L+T+DF
Sbjct: 4 GRLTFRNINALAPMVRVGTLPMRLLALDYGADVVYCEELIDIKMAQCRRVVNDVLDTVDF 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
V P D V+FRTC +EK +++ Q+GTADP+RAL A+ VE DVAAID+NMGCPK++S G
Sbjct: 64 VAP-DDRVMFRTCGKEKERVVFQMGTADPDRALAVARLVEMDVAAIDVNMGCPKEYSTKG 122
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALLS PD IL L+S +S+PV+CKIR+ +T+AL +R+E G+ AI VHG
Sbjct: 123 GMGAALLSDPDKIEAILRKLVSGVSVPVTCKIRILPTLEETVALAQRIEKVGVAAIAVHG 182
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV-DYGGVFSLNCA 252
R K ERPRH + I+ + + + +PVIANGGS ++V Y + CA
Sbjct: 183 RFKDERPRHPVHCDYIQAVARAVSVPVIANGGSLDLVKSYEDIEEFRCA 231
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 244 GGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQ 301
GGV ++ F R YP + PK +L + +R E P YETVQ ++ F+S VT++ K+
Sbjct: 345 GGVITMAVKFERREYPPQITPKMVLLEWSRKQRMEQPLYETVQRPQDRAFQSTVTLDEKK 404
Query: 302 YTSKF 306
Y S
Sbjct: 405 YRSSL 409
>gi|312375539|gb|EFR22895.1| hypothetical protein AND_14041 [Anopheles darlingi]
Length = 512
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 126/222 (56%), Positives = 163/222 (73%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
MA + ++Y NK+ILAPMVR+ TLP RLLAL+YGADLVY+EE++D KL++ ER+VND+
Sbjct: 1 MAGKIKTQLDYRNKLILAPMVRVGTLPMRLLALEYGADLVYTEEIIDWKLLRAERRVNDV 60
Query: 79 LNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
L TID++D DG+VVFRTCP E+ K++LQIGTA ERA + ++ DV+AID+NMGCPK
Sbjct: 61 LGTIDYIDTTDGTVVFRTCPAERGKVVLQIGTAAAERAAAVGRMLQEDVSAIDVNMGCPK 120
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198
FS+ GGMG ALL A +IL L+ +SIPV+CKIR+ + DTI L + L++ GI
Sbjct: 121 DFSIKGGMGVALLYDLPRAKSILEALVQTVSIPVTCKIRLMPDVDDTIKLARELQSTGIS 180
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
AIGVHGRTK ERPR I + + L IPVIANGGS+ I
Sbjct: 181 AIGVHGRTKTERPRDPVNEAAIARVAKSLDIPVIANGGSQSI 222
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 246 VFSLNCAFLRNHYPVE-KLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTS 304
V N F+R ++P + +LPKT L+ + + E+ +YE Q +KLF+ ++ +GK+Y+S
Sbjct: 373 VIEENICFIRANFPQDNELPKTKLFLYARRNNLELAQYEVQQKDKLFKGIIEFDGKRYSS 432
Query: 305 KF 306
F
Sbjct: 433 TF 434
>gi|395508373|ref|XP_003758487.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
[Sarcophilus harrisii]
Length = 491
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 127/231 (54%), Positives = 168/231 (72%), Gaps = 4/231 (1%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N + Y K+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+TI
Sbjct: 4 NSLTLCYQGKVILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMLQCKRVVNEVLDTI 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P + VVFRTC RE+NK++ Q+G+AD ERAL A+ VE+DVA IDINMGCPK++S
Sbjct: 64 DFVAP-NERVVFRTCEREQNKVVFQMGSADAERALAVARLVENDVAGIDINMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ + PV+CKIR+ + +T+ L KR+E G+ AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGICKPVTCKIRILPSLEETLNLVKRIERTGVAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAF 253
HGR K ERP+H ++I+ + + + IPVIANGGS D+ V+S AF
Sbjct: 183 HGRKKEERPQHPVHCDIIKAIAEAVSIPVIANGGSH---DHIKVYSDLEAF 230
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQYT 303
V + F + YP + PK L C+ ++ P YET+Q ++LFRS+V V+ +Y
Sbjct: 350 VIQMAVKFDKRQYPPQITPKMCLLEWCRKEKLAQPVYETIQRPVDRLFRSIVIVSEHKYC 409
Query: 304 S 304
S
Sbjct: 410 S 410
>gi|226479846|emb|CAX73219.1| dihydrouridine synthase 2-like, SMM1 homolog [Schistosoma
japonicum]
Length = 511
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 118/225 (52%), Positives = 169/225 (75%), Gaps = 1/225 (0%)
Query: 17 LDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN 76
+ + ++ Q+ + + + LAPMVR++T P RLL L+YGAD V SEEL+D +++++ R N
Sbjct: 1 MTINHSGQSTFDATGMVFLAPMVRVSTHPMRLLCLEYGADYVISEELIDQRVIRSSRIAN 60
Query: 77 DLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGC 136
D LNT+DF+ P DGSV FRT EKN++I+Q+GT++PE AL+AAK +E+DV AID+NMGC
Sbjct: 61 DELNTVDFILP-DGSVTFRTSAEEKNRVIVQLGTSNPETALKAAKVLENDVMAIDVNMGC 119
Query: 137 PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACG 196
PK +S+ GGMGAALL+ PD ILTTL +NL IPV+CK+R+ T+AL K +E+ G
Sbjct: 120 PKAYSVKGGMGAALLTKPDTVKEILTTLTTNLRIPVTCKMRILPELDKTVALAKLIESTG 179
Query: 197 IIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
++AI +HGRT ER HRNR E+I+ + Q + IP++ANGGS++I+
Sbjct: 180 VVAITIHGRTIHERSMHRNRNEVIQAIAQSVSIPILANGGSRDII 224
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 31/112 (27%)
Query: 211 PRHRNRIE-------MIRTLTQHLKIPVIAN----------GGSKEIVDYGGVFSLNCAF 253
P R RIE + TLT PV+ N S+EIV L+ +
Sbjct: 372 PEKRARIEDSLSCAPSVVTLTD----PVVNNDNDVYEEGIKNNSEEIV-------LSIPY 420
Query: 254 LRNHYPVEKL-PKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQY 302
R +P PK IL HCK +++ PKYETV+ ++ F S V V+G++Y
Sbjct: 421 ERRFWPDHGTSPKQILSEHCKLLKWDSPKYETVENREKRSFFSAVLVDGRRY 472
>gi|449675240|ref|XP_002165230.2| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Hydra
magnipapillata]
Length = 433
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ YSNKIILAPMVR+ TLPFRLLAL YGAD+VY+EE++D+K+++ +R N LL+T DF+
Sbjct: 3 LTYSNKIILAPMVRIGTLPFRLLALRYGADIVYTEEIIDYKMIECKRIENKLLDTTDFL- 61
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
DG+VVFRTC EK K++ Q+GT + ERAL A+ +E D+ IDINMGCPK+FS+ GGM
Sbjct: 62 LADGTVVFRTCKEEKGKLVFQMGTNNAERALSVAQMLEKDIDGIDINMGCPKEFSVKGGM 121
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD ILT L+ NLSIPV+CKIR+ +DTI L K +EA G+ AI +HGRT
Sbjct: 122 GAALLTQPDKVKQILTGLVQNLSIPVTCKIRILPQLSDTIELAKLIEATGVKAIAIHGRT 181
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
K ER + I+ + + IPVIANGGS++I Y
Sbjct: 182 KDERSSSPCHNDYIKAVADAVNIPVIANGGSQDIKTY 218
>gi|345800966|ref|XP_546866.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Canis lupus
familiaris]
Length = 493
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 120/214 (56%), Positives = 163/214 (76%), Gaps = 1/214 (0%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+DFV
Sbjct: 7 SLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFV 66
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
P D VVFRTC RE+++++ Q+GT+D +RAL AK VE+DVA ID+NMGCPK++S GG
Sbjct: 67 AP-DERVVFRTCEREQSRVVFQMGTSDADRALAVAKLVENDVAGIDVNMGCPKEYSTKGG 125
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
MGAALLS PD IL+TL+ + PV+CKIR+ + DT++L KR+E GI A+ VHGR
Sbjct: 126 MGAALLSDPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAVTVHGR 185
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
+ ERP+H E I+ + + + IPVIANGGS +
Sbjct: 186 KREERPQHPVSCEAIKAIAETVSIPVIANGGSHD 219
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 240 IVDYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTV 297
+ D GV + F R Y + PK L C+ ++ P Y+TVQ ++LF S+VTV
Sbjct: 346 VEDTSGVIKMAVKFDRRAYSPQITPKMCLLEWCRKEKLAQPVYDTVQRPLDRLFCSVVTV 405
Query: 298 NGKQYTS 304
++Y S
Sbjct: 406 AEQKYQS 412
>gi|357517083|ref|XP_003628830.1| tRNA-dihydrouridine synthase 2-like protein [Medicago truncatula]
gi|355522852|gb|AET03306.1| tRNA-dihydrouridine synthase 2-like protein [Medicago truncatula]
Length = 322
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/238 (53%), Positives = 166/238 (69%), Gaps = 2/238 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK ILAPMVR+ TLP RLLA +YGAD+ Y EE+VDHK++K ER++N+ L + DFV+
Sbjct: 1 MDYRNKKILAPMVRVGTLPLRLLAAEYGADITYGEEIVDHKIIKCERRINEHLGSTDFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
SVVFRTC +EKN+++ QIGT++ RAL AA+ V +DVAA+DINMGCPK FSL+GGM
Sbjct: 61 KGTESVVFRTCDQEKNRVVFQIGTSNAVRALTAAQLVCNDVAAVDINMGCPKAFSLSGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLS P++ +ILTTL NLS+PV+CKIR+ + DT+ L +R+E G+ AI VHGR
Sbjct: 121 GAALLSKPELISDILTTLRRNLSLPVTCKIRLLKSPHDTVELARRIEKTGVDAIAVHGRY 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEKLP 264
+RPR + I + L IPVIANG E D+ + S F H P LP
Sbjct: 181 VLDRPRDPAKWNGIADVVSALSIPVIANGDVFEYDDFQRIKSATGMF--GHIPRLSLP 236
>gi|224064274|ref|XP_002192167.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog-like
[Taeniopygia guttata]
Length = 490
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/225 (54%), Positives = 164/225 (72%), Gaps = 2/225 (0%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
+ K ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R +N++L T+DFV P
Sbjct: 9 FRGKKILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMMQCKRVINEVLETVDFVAPN 68
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
D VVFRTC RE+ +++ Q+G+AD ERAL AK VE DVA IDINMGCPK++S GGMGA
Sbjct: 69 D-RVVFRTCERERERVVFQMGSADAERALAVAKLVESDVAGIDINMGCPKEYSTKGGMGA 127
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALLS PD +ILTTL+ + PV+CKIR+ + DT+ L KR+E GI AI VHGR K
Sbjct: 128 ALLSDPDKIESILTTLVKGICKPVTCKIRILPSVEDTVNLVKRIEKTGIAAIAVHGRKKE 187
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV-DYGGVFSLNCA 252
ERP+H ++I+ +++ + IPVIANGGS + + +Y + + A
Sbjct: 188 ERPQHPVHCDVIKAISEAVSIPVIANGGSHDFIKEYADIETFQKA 232
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQYT 303
V + F + YP + PK L C+ ++ P YETVQ ++LF S+VTV ++Y
Sbjct: 349 VIKMAVRFDKREYPPQITPKMYLLEWCRKEKHPQPVYETVQRPLDRLFCSVVTVAEQKYR 408
Query: 304 S 304
S
Sbjct: 409 S 409
>gi|297699046|ref|XP_002826610.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like [Pongo abelii]
Length = 493
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPKQ+S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD +L+ + PV+C IR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKLLSLFVKGTRRPVTCNIRILPSLEDTLSLVKRIERTGIAAITV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + + IPVIANGGS +
Sbjct: 183 HGRKQEERPQHPVSCEVIKAIADTVSIPVIANGGSHD 219
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPVDRLFSSIVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|351714128|gb|EHB17047.1| tRNA-dihydrouridine synthase 2-like protein [Heterocephalus glaber]
Length = 492
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/217 (55%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NNLSLCYQNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC +E+N+++ Q+GT+D ERAL + VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCAKEQNRVVFQMGTSDAERALAVVRLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL TL+ PV+CKIR+ + DT++L KR+E G+ AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILGTLVRGTRRPVTCKIRILPSLEDTLSLVKRIERTGVAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR ERP+H E+I+ + L IPVIANGGS +
Sbjct: 183 HGRKHEERPQHPVHCEVIKAIAGTLSIPVIANGGSHD 219
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VT+
Sbjct: 348 DTSGVIKMAVKFDRRAYPPQITPKMCLLEWCRREKLAQPVYETVQRPVDRLFCSVVTIAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>gi|126304888|ref|XP_001373897.1| PREDICTED: tRNA-dihydrouridine synthase 2 [Monodelphis domestica]
Length = 495
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/231 (53%), Positives = 167/231 (72%), Gaps = 4/231 (1%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N + Y K+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+TI
Sbjct: 4 NNLTLCYHGKVILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMLQCKRVVNEVLDTI 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P + ++FRTC RE+NK++ Q+G+AD ERAL AK VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-NERIIFRTCERERNKVVFQMGSADAERALAVAKLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMG ALLS PD IL+TL+ + PV+CKIR+ + DT+ L KR+E G+ AI V
Sbjct: 123 KGGMGVALLSDPDKIEKILSTLVKGICKPVTCKIRILPSLEDTLNLVKRIERTGVAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAF 253
HGR K ERP+H ++I+ + + + IP+IANGGS D+ V+S AF
Sbjct: 183 HGRKKEERPQHPVHCDIIKAIAEAVSIPIIANGGSH---DHIKVYSDLDAF 230
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 237 SKEIVDYGG---VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLF 291
++E D G V + F + YP + PK L C+ ++ P YET+Q ++LF
Sbjct: 338 AQEEDDQAGDTDVIRMAVKFDKRQYPPQITPKMCLLEWCRKEKLAQPVYETIQRPVDRLF 397
Query: 292 RSLVTVNGKQYTS 304
S+VTV+ ++Y S
Sbjct: 398 CSVVTVSERKYRS 410
>gi|363738118|ref|XP_414079.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Gallus gallus]
Length = 490
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/225 (55%), Positives = 165/225 (73%), Gaps = 2/225 (0%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
+ K ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L T+DFV P
Sbjct: 9 FRGKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMMQCKRVVNEILETVDFVAP- 67
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+ VVFRTC RE++++I Q+G+AD RAL AK VE DVA IDINMGCPK++S GGMGA
Sbjct: 68 NERVVFRTCERERHRVIFQMGSADAGRALAVAKLVESDVAGIDINMGCPKEYSTKGGMGA 127
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALLS PD +ILTTL+ + PV+CKIR+ + DT+ L KR+E GI AI VHGR K
Sbjct: 128 ALLSDPDKIESILTTLVKGICKPVTCKIRILPSVEDTVDLVKRIEKTGIAAIAVHGRKKE 187
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV-DYGGVFSLNCA 252
ERP+H ++I+ +++ + IPVIANGGS + + +YG + + A
Sbjct: 188 ERPQHPVHCDVIKAISEAVSIPVIANGGSHDFIKEYGDIETFQKA 232
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQYT 303
V + F + YP + PK L C+ ++ P YETVQ ++LF S+VTV ++Y
Sbjct: 349 VIKMAVRFDKREYPPQITPKMYLLEWCRKEKHPQPVYETVQRPLDRLFCSVVTVADQKYR 408
Query: 304 S 304
S
Sbjct: 409 S 409
>gi|255576019|ref|XP_002528905.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
gi|223531659|gb|EEF33485.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
Length = 330
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/218 (55%), Positives = 158/218 (72%), Gaps = 3/218 (1%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y NK++LAPMVR+ TLPFRLLA +YGAD+ Y EE++DHKL+K ERKVN+ + DFV+
Sbjct: 1 MEYENKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKLLKCERKVNEYIGCTDFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+VVFRTC EKN+++ Q+GT+D RAL AA+ V DVAAIDINMGCPK FS++GGM
Sbjct: 61 KGTENVVFRTCNEEKNRVVFQMGTSDAVRALTAAQMVCKDVAAIDINMGCPKSFSISGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ P++ +ILTTL NL PV+CKIR+ + DT+ L +R+E G+ A+ VHGR
Sbjct: 121 GAALLTKPELIHDILTTLKRNLDSPVTCKIRLLKSPQDTVELARRIEKTGVSALAVHGRK 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYG 244
A+RPR + I + L IPVIANG ++ DYG
Sbjct: 181 VADRPRDPAKWSEIADIVSTLSIPVIANG---DVFDYG 215
>gi|326927225|ref|XP_003209793.1| PREDICTED: tRNA-dihydrouridine synthase 2-like, partial [Meleagris
gallopavo]
Length = 497
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/213 (56%), Positives = 160/213 (75%), Gaps = 1/213 (0%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
+ K ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L T+DFV P
Sbjct: 9 FRGKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMMQCKRVVNEVLETVDFVAP- 67
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+ VVFRTC RE+++++ Q+G+AD ERAL AK VE DVA IDINMGCPK++S GGMGA
Sbjct: 68 NERVVFRTCERERHRVVFQMGSADAERALAVAKLVESDVAGIDINMGCPKEYSTKGGMGA 127
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALLS PD +ILTTL+ + PV+CKIR+ + DT+ L KR+E GI AI VHGR K
Sbjct: 128 ALLSDPDKIESILTTLVKGICKPVTCKIRILPSVEDTVNLVKRIEKTGIAAIAVHGRKKE 187
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
ERP+H ++I+ +++ + IPVIANGGS + +
Sbjct: 188 ERPQHPVHCDVIKAISEAVSIPVIANGGSHDFI 220
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQYT 303
V + F + YP + PK L C+ ++ P YETVQ +KLF S+VTV ++Y
Sbjct: 349 VIKMAVRFDKREYPPQITPKMYLLEWCRKEKHPQPVYETVQRPLDKLFCSVVTVADQKYR 408
Query: 304 S 304
S
Sbjct: 409 S 409
>gi|326492876|dbj|BAJ90294.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526215|dbj|BAJ97124.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 320
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 125/267 (46%), Positives = 173/267 (64%), Gaps = 21/267 (7%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK++LAPMVR TLPFRLLA +YGAD+ Y EE++DHK V +R N+ L T DF++
Sbjct: 1 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
SVVFRTCP+E+++++ Q+GT+D RAL+AA+ V +DVAAIDINMGCPK FS++GGM
Sbjct: 61 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
G+ALLS P++ +ILTTL NL+ PV+CKIR+ + DT+ L +R+E CG+ A+ VHGR
Sbjct: 121 GSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARRIEKCGVPALAVHGRK 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY---------------------GG 245
+RPR + + I + L IPVIANG E D+
Sbjct: 181 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 240
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHC 272
+FS N + E + KTIL+ +C
Sbjct: 241 IFSPNGKVPWEDFKREYVRKTILWDNC 267
>gi|62859019|ref|NP_001016230.1| dihydrouridine synthase 2-like, SMM1 homolog [Xenopus (Silurana)
tropicalis]
gi|89268176|emb|CAJ82133.1| similar to dus2l (dihydrouridine synthase 2-like) [Xenopus
(Silurana) tropicalis]
Length = 495
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/215 (53%), Positives = 166/215 (77%), Gaps = 1/215 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+++ +K IL PMVR+ TLP RLLALDYGAD+VYSEELVD K+++ +R VND+L+T+D+V
Sbjct: 4 LSFRDKNILGPMVRVGTLPMRLLALDYGADIVYSEELVDIKMLQCKRVVNDVLHTVDYVS 63
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P + V+F+TC RE++ ++ Q+GTAD ERAL AK +++D+AAIDINMGCPK++S GGM
Sbjct: 64 PTE-RVIFQTCERERHSVVFQMGTADAERALTVAKLIQNDIAAIDINMGCPKEYSTKGGM 122
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL P+ IL+TL+ +S P++CKIR+ + +TI+L K +E G+ AI VHGR+
Sbjct: 123 GAALLLCPEKIEMILSTLVKGISKPITCKIRILPSLTETISLVKLIEKTGVAAIAVHGRS 182
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
K ERP+H ++I+ ++Q + IPVIANGGS+E +
Sbjct: 183 KNERPQHPVHCDVIKAISQAVSIPVIANGGSQEFI 217
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQYT 303
+ SL F + +Y + PK +L C+ ++ P Y TVQ +K F+S+V V+ QY
Sbjct: 349 IISLPIRFDKRNYMSQITPKMLLLEWCRKRKLPQPVYHTVQRPVDKFFQSVVKVDEMQYA 408
Query: 304 S 304
S
Sbjct: 409 S 409
>gi|390338395|ref|XP_003724768.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
2 [Strongylocentrotus purpuratus]
Length = 540
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/217 (53%), Positives = 157/217 (72%), Gaps = 1/217 (0%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ ++Y+NK+ILAPMVR+ TLP RLLAL+YGAD+VY +EL+D K++ R VN +L+T+D+
Sbjct: 3 SRLSYANKVILAPMVRIGTLPTRLLALEYGADIVYCQELIDFKMLTCRRHVNRVLDTVDY 62
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
+ D V+FRTC +E ++++ Q+GTAD +RAL AK VE DV+ IDINMGCPK FSL G
Sbjct: 63 ISK-DDVVIFRTCSKETDRLVFQMGTADAQRALRVAKMVEKDVSGIDINMGCPKDFSLKG 121
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALL PD ILTTL+ + IPV+CKIR+ DTIAL K +E G+ A+ VHG
Sbjct: 122 GMGAALLQKPDTIKEILTTLVQGVKIPVTCKIRILPKLEDTIALAKMIEQTGVAALAVHG 181
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
R ERPRH + I+ + + IP+I NGGS++I+
Sbjct: 182 RLTEERPRHPVHCDAIKAVADSISIPLITNGGSQDII 218
>gi|390338393|ref|XP_003724767.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
1 [Strongylocentrotus purpuratus]
Length = 540
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/217 (53%), Positives = 157/217 (72%), Gaps = 1/217 (0%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ ++Y+NK+ILAPMVR+ TLP RLLAL+YGAD+VY +EL+D K++ R VN +L+T+D+
Sbjct: 3 SRLSYANKVILAPMVRIGTLPTRLLALEYGADIVYCQELIDFKMLTCRRHVNRVLDTVDY 62
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
+ D V+FRTC +E ++++ Q+GTAD +RAL AK VE DV+ IDINMGCPK FSL G
Sbjct: 63 ISK-DDVVIFRTCSKETDRLVFQMGTADAQRALRVAKMVEKDVSGIDINMGCPKDFSLKG 121
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALL PD ILTTL+ + IPV+CKIR+ DTIAL K +E G+ A+ VHG
Sbjct: 122 GMGAALLQKPDTIKEILTTLVQGVKIPVTCKIRILPKLEDTIALAKMIEQTGVAALAVHG 181
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
R ERPRH + I+ + + IP+I NGGS++I+
Sbjct: 182 RLTEERPRHPVHCDAIKAVADSISIPLITNGGSQDII 218
>gi|390338391|ref|XP_784269.3| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
3 [Strongylocentrotus purpuratus]
Length = 540
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/217 (53%), Positives = 157/217 (72%), Gaps = 1/217 (0%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ ++Y+NK+ILAPMVR+ TLP RLLAL+YGAD+VY +EL+D K++ R VN +L+T+D+
Sbjct: 3 SRLSYANKVILAPMVRIGTLPTRLLALEYGADIVYCQELIDFKMLTCRRHVNRVLDTVDY 62
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
+ D V+FRTC +E ++++ Q+GTAD +RAL AK VE DV+ IDINMGCPK FSL G
Sbjct: 63 ISK-DDVVIFRTCSKETDRLVFQMGTADAQRALRVAKMVEKDVSGIDINMGCPKDFSLKG 121
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALL PD ILTTL+ + IPV+CKIR+ DTIAL K +E G+ A+ VHG
Sbjct: 122 GMGAALLQKPDTIKEILTTLVQGVKIPVTCKIRILPKLEDTIALAKMIEQTGVAALAVHG 181
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
R ERPRH + I+ + + IP+I NGGS++I+
Sbjct: 182 RLTEERPRHPVHCDAIKAVADSISIPLITNGGSQDII 218
>gi|326428503|gb|EGD74073.1| tRNA-dihydrouridine synthase [Salpingoeca sp. ATCC 50818]
Length = 521
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 159/223 (71%), Gaps = 1/223 (0%)
Query: 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLN 80
N + Y K++LAPMVRM TLP RLLAL YGADLVY EE+VD+K+++ R N +L+
Sbjct: 17 NTEAKRMQYCGKMMLAPMVRMGTLPTRLLALRYGADLVYGEEIVDYKILRCSRVENPVLD 76
Query: 81 TIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
T+DFV P G VVFRTC EK+++I Q+GTADP+RA+E AK VE+DVA ID+NMGCPK F
Sbjct: 77 TVDFVMP-SGLVVFRTCKEEKDRVIFQMGTADPQRAVEVAKLVENDVAGIDVNMGCPKNF 135
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200
S+ GGMGAALL PD+A +I+ L + +PV+CKIR+ T++ KR+++ GI AI
Sbjct: 136 SIKGGMGAALLREPDLAYDIMAALTKAVKVPVTCKIRLLPTREATMSFMKRMQSTGIAAI 195
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
G+HGR + +RPR +++ + + IPVIANGGS + +Y
Sbjct: 196 GLHGRLREQRPREPVQLDAMTAAIGDMHIPVIANGGSLDFKNY 238
>gi|109128993|ref|XP_001097732.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Macaca mulatta]
Length = 492
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 119/215 (55%), Positives = 159/215 (73%), Gaps = 2/215 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GG GA L + P IL+TL+ + PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGG-GACLKTLPQKKKKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 181
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237
HGR + ERP+H E+I+ + L IPVIANGGS
Sbjct: 182 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGS 216
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 347 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 406
Query: 300 KQYTS 304
++Y S
Sbjct: 407 QKYQS 411
>gi|340374433|ref|XP_003385742.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Amphimedon
queenslandica]
Length = 451
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 152/211 (72%), Gaps = 1/211 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+NK+I+APMVR+ TLP RLLAL YGAD+VYSEE +DH ++K R N L+ T+DF++
Sbjct: 1 MEYANKVIMAPMVRIGTLPSRLLALKYGADIVYSEETIDHSILKCRRFHNRLIGTVDFIE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
G +FRTCP E+ KII Q+GT+DP RALEAAK V+ DVA IDINMGCPK FSL GGM
Sbjct: 61 E-GGRSIFRTCPLERRKIIFQMGTSDPARALEAAKLVKDDVAGIDINMGCPKGFSLKGGM 119
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL P+ ILTTL+ L IPV+CKIR+ + T+ L K +E+ G+ A+ VHGRT
Sbjct: 120 GAALLEKPEKVREILTTLVQGLDIPVTCKIRILPSVEKTLELVKVIESTGVAALAVHGRT 179
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237
K ER I+++R + +P+IANGGS
Sbjct: 180 KEERSSSPVHIDVLRQIASIATVPIIANGGS 210
>gi|302785397|ref|XP_002974470.1| hypothetical protein SELMODRAFT_174143 [Selaginella moellendorffii]
gi|300158068|gb|EFJ24692.1| hypothetical protein SELMODRAFT_174143 [Selaginella moellendorffii]
Length = 319
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 115/210 (54%), Positives = 153/210 (72%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
I+Y +K+ILAPMVR+ TLPFR+LA YGADL Y EE+VDHK++K R VND+L +IDFV
Sbjct: 4 GIDYRDKLILAPMVRVGTLPFRMLAAGYGADLTYGEEIVDHKMLKCSRVVNDVLGSIDFV 63
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
+ VVFRTC E++ ++ Q+GT+DP RAL A+ + D+AA+DINMGCPK FS+TGG
Sbjct: 64 EKGTNDVVFRTCKAERDHVVFQMGTSDPYRALTVAQLLCKDIAAVDINMGCPKPFSVTGG 123
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
MG+ALLS P++ ILTTL NL IPV+CKIR+ + +T+ L +R+E G+ AI VHGR
Sbjct: 124 MGSALLSQPELVSEILTTLRRNLDIPVTCKIRLLKSTQETVELARRIEKTGVSAIAVHGR 183
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+RP+ R + + I + L IPVIANG
Sbjct: 184 RIPDRPKDRAKWDGIADVVSALSIPVIANG 213
>gi|302818315|ref|XP_002990831.1| hypothetical protein SELMODRAFT_132390 [Selaginella moellendorffii]
gi|300141392|gb|EFJ08104.1| hypothetical protein SELMODRAFT_132390 [Selaginella moellendorffii]
Length = 299
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 115/210 (54%), Positives = 153/210 (72%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
I+Y +K+ILAPMVR+ TLPFR+LA YGADL Y EE+VDHK++K R VND+L +IDFV
Sbjct: 4 GIDYRDKLILAPMVRVGTLPFRMLAAGYGADLTYGEEIVDHKMLKCSRVVNDVLGSIDFV 63
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
+ VVFRTC E++ ++ Q+GT+DP RAL A+ + D+AA+DINMGCPK FS+TGG
Sbjct: 64 ENGTNDVVFRTCKAERDHVVFQMGTSDPYRALTVAQLLCRDIAAVDINMGCPKPFSVTGG 123
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
MG+ALLS P++ ILTTL NL IPV+CKIR+ + +T+ L +R+E G+ AI VHGR
Sbjct: 124 MGSALLSQPELVSEILTTLRRNLDIPVTCKIRLLKSTQETVELARRIEKTGVSAIAVHGR 183
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+RP+ R + + I + L IPVIANG
Sbjct: 184 RIPDRPKDRAKWDGIADVVSALSIPVIANG 213
>gi|344253995|gb|EGW10099.1| tRNA-dihydrouridine synthase 2-like [Cricetulus griseus]
Length = 475
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 117/202 (57%), Positives = 153/202 (75%), Gaps = 1/202 (0%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97
MVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+DFV P D VVFRTC
Sbjct: 1 MVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAP-DDRVVFRTC 59
Query: 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157
RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S GGMGAALLS PD
Sbjct: 60 EREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKI 119
Query: 158 CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI 217
IL+TL+ + PV+CKIR+ + DT+ L KR+E GI AI VHGR + ERP+H
Sbjct: 120 EKILSTLVKGIHKPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNREERPQHPVSC 179
Query: 218 EMIRTLTQHLKIPVIANGGSKE 239
E+IR + + L IPVIANGGS +
Sbjct: 180 EVIRAIAETLSIPVIANGGSHD 201
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D G+ + F R YP + PK L C+ ++ P YETVQ +++F S+VTV
Sbjct: 330 DTSGIIKMAIKFDRRAYPPQITPKMCLLEWCRREKLPQPMYETVQRPIDRMFCSVVTVAE 389
Query: 300 KQYTSKF 306
++Y S
Sbjct: 390 QKYQSTL 396
>gi|413919017|gb|AFW58949.1| hypothetical protein ZEAMMB73_913989 [Zea mays]
gi|413919018|gb|AFW58950.1| hypothetical protein ZEAMMB73_913989 [Zea mays]
Length = 420
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/225 (51%), Positives = 159/225 (70%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
+ + ++ + Y +K++LAPMVR+ TLPFRLLA +YGAD+ Y EE++DHK +K ER N+
Sbjct: 93 LRHGDEVGMEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNES 152
Query: 79 LNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
L T DFV+ SVVFRTCP+E+ +++ Q+GT++ RAL+AA+ V DV+AIDINMGCPK
Sbjct: 153 LGTTDFVEKGTDSVVFRTCPQERGRVVFQMGTSNAVRALKAAQIVCRDVSAIDINMGCPK 212
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198
FSL+GGMGAALLS P++ +ILTTL NL V+CKIR+ + DT+ L +R+E G+
Sbjct: 213 SFSLSGGMGAALLSKPELIHDILTTLRRNLDTTVTCKIRLLNTPKDTVELARRIEKTGVP 272
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
A+ VHGR +RPR + + I + L IPVIANG E D+
Sbjct: 273 ALAVHGRKIKDRPRDLAKWDEIADVVSALSIPVIANGDVFEYEDF 317
>gi|115459590|ref|NP_001053395.1| Os04g0531300 [Oryza sativa Japonica Group]
gi|38346764|emb|CAD41143.2| OSJNBa0081C01.15 [Oryza sativa Japonica Group]
gi|113564966|dbj|BAF15309.1| Os04g0531300 [Oryza sativa Japonica Group]
gi|116312037|emb|CAJ86402.1| OSIGBa0125M19.5 [Oryza sativa Indica Group]
gi|125549126|gb|EAY94948.1| hypothetical protein OsI_16753 [Oryza sativa Indica Group]
gi|215737387|dbj|BAG96316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 319
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 157/217 (72%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y +K++LAPMVR+ TLPFRLLA +YGAD+ Y EE++DHK +K ER N+ L T DF++
Sbjct: 1 MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+VVFRTCP+E+++++ Q+GT+D RAL+AA+ V +DVAAIDINMGCPK FSL+GGM
Sbjct: 61 RGTDTVVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLS P++ +ILTTL NL V+CKIR+ + DT+ L +R+E G+ A+ VHGR
Sbjct: 121 GAALLSKPELIHDILTTLRRNLDTTVTCKIRLLNTRQDTVELARRVEKIGVPALAVHGRK 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+RPR + + I + L IPVIANG E D+
Sbjct: 181 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDF 217
>gi|449451357|ref|XP_004143428.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Cucumis
sativus]
Length = 325
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 158/217 (72%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK +LAPMVR+ TLPFRLLA YGAD+ Y EE++DHK++K ER++N+ + + DFV+
Sbjct: 1 MDYENKFVLAPMVRVGTLPFRLLASQYGADITYGEEIIDHKMIKCERRLNEHVGSTDFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+VVFRTC E+ ++ Q+GT++ RAL AA+ V DVAAIDINMGCPK FS++GGM
Sbjct: 61 KGTNNVVFRTCSLERKHVVFQMGTSNAARALSAAQLVCQDVAAIDINMGCPKSFSISGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD+ +ILTTL NL+I ++CKIR+ ++ DT+ L +R+E+ G+ A+GVHGR
Sbjct: 121 GAALLNKPDLIHDILTTLRRNLNILITCKIRLLNSPQDTVELARRIESTGVSALGVHGRR 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
A+RPR + I + L IPVIANG E D+
Sbjct: 181 VADRPRDPAKWSEIADVVAALTIPVIANGDIFEYDDF 217
>gi|147797460|emb|CAN64677.1| hypothetical protein VITISV_024917 [Vitis vinifera]
Length = 326
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/209 (53%), Positives = 155/209 (74%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y N+++LAPMVR+ TLPFRLLA YGAD+ Y EE++DHKL+K ER++N+ + +IDFV+
Sbjct: 1 MEYGNRLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLIKCERRLNEDIGSIDFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+VVFRTC EKN+++ Q+GT++ ERAL AA+ V DVAA+DINMGCPK FS++GGM
Sbjct: 61 KGTHNVVFRTCHEEKNRVVFQMGTSNAERALTAAQIVCKDVAAVDINMGCPKSFSISGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ P++ +ILT L NL IPV+CKIR+ + +T+ L +++E G+ A+ VHGR
Sbjct: 121 GAALLTRPELIHDILTILKRNLDIPVTCKIRLLKSSQETVELAQQIEKTGVAALAVHGRR 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
A+RPR + I + L IPVIANG
Sbjct: 181 IADRPRDPAKWNEIADVVAALSIPVIANG 209
>gi|357164898|ref|XP_003580204.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Brachypodium
distachyon]
Length = 320
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 158/217 (72%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y NK++LAPMVR+ TLPFRLLA +YGAD+ Y EE+VDHK +K ER N+ L T DF++
Sbjct: 1 MEYRNKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIVDHKFLKCERVANESLGTTDFLE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
++VFRTCP+E+++++ Q+GT+D RAL+AA+ V +DVAAIDINMGCPK FS++GGM
Sbjct: 61 RGTDNLVFRTCPQERDRVVFQMGTSDAVRALKAAQIVCNDVAAIDINMGCPKSFSVSGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLS P++ +ILTTL NL ++CKIR+ + DT+ L +R+E G+ A+ VHGR
Sbjct: 121 GAALLSKPELIHDILTTLRRNLDTTLTCKIRLLNTRQDTVELARRIEKTGVPALAVHGRK 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+RPR ++ + I + L IPVIANG E D+
Sbjct: 181 VKDRPRDPSKWDEIADVVSALSIPVIANGDVFEYDDF 217
>gi|391328215|ref|XP_003738585.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
[Metaseiulus occidentalis]
Length = 462
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/234 (52%), Positives = 164/234 (70%), Gaps = 4/234 (1%)
Query: 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNT 81
++ +Y K ILAPMVR+ TLP RLLAL++GADLVYSEEL+D++L+K +R N LL +
Sbjct: 3 GDRRKFDYHGKNILAPMVRVGTLPTRLLALEFGADLVYSEELIDYRLLKCKRVENTLLGS 62
Query: 82 IDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFS 141
ID++D + +++RTC E+ + I+QIGT PERA+ A ++ DVA ID+NMGCPK+FS
Sbjct: 63 IDYIDA-ENQILYRTCAAERGRNIVQIGTCSPERAVRVANMIKADVAGIDVNMGCPKEFS 121
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIP-VSCKIRVFHNEADTIALCKRLEACGIIAI 200
+ G MGAALL+ P+ ILT L L V+CKIRVF + TI LCKR+EA G+ AI
Sbjct: 122 IKGNMGAALLTQPERIEAILTALREALPDHLVTCKIRVFDDVEKTIELCKRMEATGVDAI 181
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
GVHGRT+ ERP+H NR I+ + L+IPVIANGGS EI ++ + F NC
Sbjct: 182 GVHGRTRDERPQHANRNAAIKAVADALRIPVIANGGSSEIRNHEDIDKFRRNCG 235
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSK 305
F + F RN + + LPKT+L + + E P YE + +K+FR++V GK+YTS
Sbjct: 358 TFGIEVKFCRNLFGMSDLPKTVLLNKSRAEGLEQPDYEIIPVDKMFRAVVVYGGKKYTSL 417
Query: 306 F 306
F
Sbjct: 418 F 418
>gi|356496042|ref|XP_003516879.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 2 [Glycine
max]
Length = 321
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 156/217 (71%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y NK++LAPMVR+ TLPFRLLA YGAD+ Y EE++DHK++K +R++N+L+ + DFV+
Sbjct: 1 MEYRNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKMLKCDRQINELIGSTDFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+VVFRTC EK+ ++ QIGT+D RAL A+ V +DVAA+DINMGCPK FS++GGM
Sbjct: 61 KGTKNVVFRTCDEEKDTVVFQIGTSDAVRALATAQLVCNDVAAVDINMGCPKSFSVSGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLS P++ +ILTTL NL+ PV+CKIR+ + DT+ L +R+E G+ A+ VHGR
Sbjct: 121 GAALLSKPELIHDILTTLRRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHGRK 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+RPR + I + L IPVIANG E D+
Sbjct: 181 VPDRPRDPAKWNEIADVVSALSIPVIANGDVFEYDDF 217
>gi|356496040|ref|XP_003516878.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 1 [Glycine
max]
Length = 320
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 156/217 (71%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y NK++LAPMVR+ TLPFRLLA YGAD+ Y EE++DHK++K +R++N+L+ + DFV+
Sbjct: 1 MEYRNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKMLKCDRQINELIGSTDFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+VVFRTC EK+ ++ QIGT+D RAL A+ V +DVAA+DINMGCPK FS++GGM
Sbjct: 61 KGTKNVVFRTCDEEKDTVVFQIGTSDAVRALATAQLVCNDVAAVDINMGCPKSFSVSGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLS P++ +ILTTL NL+ PV+CKIR+ + DT+ L +R+E G+ A+ VHGR
Sbjct: 121 GAALLSKPELIHDILTTLRRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHGRK 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+RPR + I + L IPVIANG E D+
Sbjct: 181 VPDRPRDPAKWNEIADVVSALSIPVIANGDVFEYDDF 217
>gi|297819610|ref|XP_002877688.1| FAD binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323526|gb|EFH53947.1| FAD binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 543
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 165/235 (70%), Gaps = 3/235 (1%)
Query: 14 FYVL--DMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT 71
F+V+ D+A + ++Y NK +LAPMVR+ TL FR+LA +YGAD+ YSEE++DHKLVK
Sbjct: 201 FFVVAFDVAT-KKTKMDYQNKHVLAPMVRVGTLSFRMLAAEYGADITYSEEIIDHKLVKC 259
Query: 72 ERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAID 131
ER++N T +FV+ +VVF TC E+N+++ Q+GT+D RAL+AA+ V +DVA +D
Sbjct: 260 ERRINVAYGTTEFVEKGTDNVVFSTCKEERNRVVFQMGTSDAVRALKAAEIVCNDVATVD 319
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKR 191
INMGCPK FS+ GGMGAALLS P++ +IL TL NL +PV+CKIR+ + ADT+ L +R
Sbjct: 320 INMGCPKAFSIQGGMGAALLSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARR 379
Query: 192 LEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV 246
+E G+ A+ VHGR A+RPR + + I + L IPVIANG E D+ +
Sbjct: 380 IEKLGVPALAVHGRKIADRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRI 434
>gi|242073810|ref|XP_002446841.1| hypothetical protein SORBIDRAFT_06g023500 [Sorghum bicolor]
gi|241938024|gb|EES11169.1| hypothetical protein SORBIDRAFT_06g023500 [Sorghum bicolor]
Length = 320
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/217 (53%), Positives = 154/217 (70%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y +K++LAPMVR+ TLPFRLLA +YGAD+ Y EE++DHKL+K ER N+ L T DFV+
Sbjct: 1 MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKLLKCERVTNESLGTTDFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
SVVFRTCP E+ +++ Q+GT++ RAL+AA+ V DV AIDINMGCPK FSL+GGM
Sbjct: 61 KGTDSVVFRTCPEERGRVVFQMGTSNAVRALKAAQLVCQDVTAIDINMGCPKSFSLSGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLS P++ +ILTTL NL V+CKIR+ + DT+ L +R+E G+ A+ VHGR
Sbjct: 121 GAALLSKPELIHDILTTLRRNLDTTVTCKIRLLNTPKDTVELARRIEKTGVPALAVHGRK 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+RPR + + I + L IPVIANG E D+
Sbjct: 181 IKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDF 217
>gi|353233363|emb|CCD80718.1| putative trna-dihydrouridine synthase [Schistosoma mansoni]
Length = 491
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/204 (58%), Positives = 154/204 (75%), Gaps = 1/204 (0%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97
MVR++T P RLL L+YGAD V SEEL+D +++++ R VN LNTIDFV P DGSV FRT
Sbjct: 1 MVRVSTHPMRLLCLEYGADYVISEELIDQRIIRSSRVVNAELNTIDFVLP-DGSVTFRTS 59
Query: 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157
EKN++I+Q+GT +P AL+AAK +E+DV ID+NMGCPK +S+ GGMGAALL+ P+I
Sbjct: 60 MEEKNRVIVQLGTPEPGTALQAAKMLENDVMGIDVNMGCPKAYSIKGGMGAALLTKPEIV 119
Query: 158 CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI 217
ILTTL +NL IPV+CKIR+ TIAL K +E+ G+ AI VHGRT ERP HRNR
Sbjct: 120 KEILTTLTTNLRIPVTCKIRILPELEKTIALAKLIESTGVAAITVHGRTINERPVHRNRN 179
Query: 218 EMIRTLTQHLKIPVIANGGSKEIV 241
E+I+T+ + IPV+ANGGS +I+
Sbjct: 180 EVIQTIANSVGIPVLANGGSHDII 203
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCAFLRNHYPVEKL-PKTI 267
P R+R+E L+ + I ++ N V + L+ + R +P PK I
Sbjct: 354 PEKRSRVE---ELSSNTTIVLVNNDNDITGVKINNLEEIVLSIPYERRFWPDHGTSPKQI 410
Query: 268 LYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQY 302
L HCK +++ PKYET++ ++ F S V V+G++Y
Sbjct: 411 LREHCKLLKWDSPKYETIEDRDKRSFFSTVLVDGRRY 447
>gi|256080282|ref|XP_002576411.1| tRNA-dihydrouridine synthase [Schistosoma mansoni]
Length = 492
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/204 (58%), Positives = 154/204 (75%), Gaps = 1/204 (0%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97
MVR++T P RLL L+YGAD V SEEL+D +++++ R VN LNTIDFV P DGSV FRT
Sbjct: 1 MVRVSTHPMRLLCLEYGADYVISEELIDQRIIRSSRVVNAELNTIDFVLP-DGSVTFRTS 59
Query: 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157
EKN++I+Q+GT +P AL+AAK +E+DV ID+NMGCPK +S+ GGMGAALL+ P+I
Sbjct: 60 MEEKNRVIVQLGTPEPGTALQAAKMLENDVMGIDVNMGCPKAYSIKGGMGAALLTKPEIV 119
Query: 158 CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI 217
ILTTL +NL IPV+CKIR+ TIAL K +E+ G+ AI VHGRT ERP HRNR
Sbjct: 120 KEILTTLTTNLRIPVTCKIRILPELEKTIALAKLIESTGVAAITVHGRTINERPVHRNRN 179
Query: 218 EMIRTLTQHLKIPVIANGGSKEIV 241
E+I+T+ + IPV+ANGGS +I+
Sbjct: 180 EVIQTIANSVGIPVLANGGSHDII 203
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCAFLRNHYPVEKL-PKTI 267
P R+R+E L+ + I ++ N V + L+ + R +P PK I
Sbjct: 355 PEKRSRVE---ELSSNTTIVLVNNDNDITGVKINNLEEIVLSIPYERRFWPDHGTSPKQI 411
Query: 268 LYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQY 302
L HCK +++ PKYET++ ++ F S V V+G++Y
Sbjct: 412 LREHCKLLKWDSPKYETIEDRDKRSFFSTVLVDGRRY 448
>gi|212722480|ref|NP_001132459.1| uncharacterized protein LOC100193915 [Zea mays]
gi|194694448|gb|ACF81308.1| unknown [Zea mays]
Length = 320
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 155/217 (71%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y +K++LAPMVR+ TLPFRLLA +YGAD+ Y EE++DHK +K ER N+ L T DFV+
Sbjct: 1 MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
SVVFRTCP+E+ +++ Q+GT++ RAL+AA+ V DV+AIDINMGCPK FSL+GGM
Sbjct: 61 KGTDSVVFRTCPQERGRVVFQMGTSNAVRALKAAQIVCRDVSAIDINMGCPKSFSLSGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLS P++ +ILTTL NL V+CKIR+ + DT+ L +R+E G+ A+ VHGR
Sbjct: 121 GAALLSKPELIHDILTTLRRNLDTTVTCKIRLLNTPKDTVELARRIEKTGVPALAVHGRK 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+RPR + + I + L IPVIANG E D+
Sbjct: 181 IKDRPRDLAKWDEIADVVSALSIPVIANGDVFEYEDF 217
>gi|380805681|gb|AFE74716.1| tRNA-dihydrouridine(20) synthase [NAD(P)+]-like, partial [Macaca
mulatta]
Length = 249
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPR 99
R+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+DFV P D VVFRTC R
Sbjct: 1 RVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAP-DDRVVFRTCER 59
Query: 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACN 159
E+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S GGMGAALLS PD
Sbjct: 60 EQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEK 119
Query: 160 ILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEM 219
IL+TL+ + PV+CKIR+ + DT++L KR+E GI AI VHGR + ERP+H E+
Sbjct: 120 ILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVSCEV 179
Query: 220 IRTLTQHLKIPVIANGGSKE 239
I+ + L IPVIANGGS +
Sbjct: 180 IKAIADTLSIPVIANGGSHD 199
>gi|356526723|ref|XP_003531966.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Glycine max]
Length = 320
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 112/209 (53%), Positives = 153/209 (73%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y NK++LAPMVR+ TLPFRLLA YGAD+ Y EE++DHK++K ER++N+L+ + DFV+
Sbjct: 1 MEYRNKLVLAPMVRVGTLPFRLLAAQYGADITYCEEIIDHKMLKCERRINELIGSTDFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+VVFRTC EK++++ QIGT+D RAL A+ V +DVAA+DINMGCPK FS++GGM
Sbjct: 61 KGTNNVVFRTCDEEKDRVVFQIGTSDAVRALTTAQLVCNDVAAVDINMGCPKSFSVSGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLS P++ +ILTTL NL+ PV+CKIR+ + DT+ L +R+E G+ A+ VHGR
Sbjct: 121 GAALLSKPELIHDILTTLKRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHGRK 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+RPR + I + L IPVI NG
Sbjct: 181 VPDRPRDPAKWNEIADVVSALSIPVIENG 209
>gi|339242325|ref|XP_003377088.1| tRNA-dihydrouridine synthase 2 [Trichinella spiralis]
gi|316974141|gb|EFV57667.1| tRNA-dihydrouridine synthase 2 [Trichinella spiralis]
Length = 724
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 153/216 (70%), Gaps = 2/216 (0%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97
MVR++TLPFRL+ LDYGADLV++EE+VD K++ RK+N+ L TIDF D FRT
Sbjct: 1 MVRISTLPFRLMCLDYGADLVFTEEIVDQKIIGCRRKINEHLGTIDFCSEGDNFPRFRTS 60
Query: 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157
+E NK++ QIGT+D E+AL AA+ VE DVA ID+NMGCPK FSL GGMGAALL +
Sbjct: 61 SKETNKLVFQIGTSDGEKALAAARVVEQDVAGIDVNMGCPKPFSLLGGMGAALLEQREKV 120
Query: 158 CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI 217
+ILT L+ N+S PVSCKIRV + DT+ LC+ +E CG+ AI +HGRT +ER +H NR
Sbjct: 121 RSILTMLVENISKPVSCKIRVLPSVEDTVDLCRLIEECGVQAITIHGRTTSERAQHPNRD 180
Query: 218 EMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNC 251
+ I + + ++IPVI NGGS EI + + F L C
Sbjct: 181 DFIAEVARAVRIPVICNGGSSEIRHHTDIENFRLKC 216
>gi|449499830|ref|XP_004160928.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Cucumis
sativus]
Length = 325
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 158/217 (72%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK +LAPMVR+ TLPFRLLA +GAD+ Y EE++DHK++K ER++N+ + + DFV+
Sbjct: 1 MDYENKFVLAPMVRVGTLPFRLLASQHGADITYGEEIIDHKMIKCERRLNEHVGSTDFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+VVFRTC E+ ++ Q+GT++ RAL AA+ V DVAAIDINMGCPK FS++GGM
Sbjct: 61 KGTNNVVFRTCSLERKHVVFQMGTSNAARALSAAQLVCQDVAAIDINMGCPKSFSISGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD+ +ILTTL NL+I ++CKIR+ ++ DT+ L +R+E+ G+ A+GVHGR
Sbjct: 121 GAALLNKPDLIHDILTTLRRNLNILITCKIRLLNSPQDTVELARRIESTGVSALGVHGRR 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
A+RPR + I + L IPVIANG E D+
Sbjct: 181 VADRPRDPAKWSEIADVVAALTIPVIANGDIFEYDDF 217
>gi|6561964|emb|CAB62468.1| putative protein [Arabidopsis thaliana]
Length = 519
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 158/223 (70%)
Query: 24 QANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTID 83
+ ++Y NK++LAPMVR+ TL FR+LA +YGAD+ Y EE++DHKLVK ER++N T +
Sbjct: 214 KTKMDYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSE 273
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
FV+ +VVF TC EK++++ Q+GT+D RAL+A++ V +DVA IDINMGCPK FS+
Sbjct: 274 FVEKGTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQ 333
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
GGMGAALLS P++ +IL TL NL +PV+CKIR+ + ADT+ L +R+E G+ A+ VH
Sbjct: 334 GGMGAALLSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVH 393
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV 246
GR A+RPR + + I + L IPVIANG E D+ +
Sbjct: 394 GRKIADRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRI 436
>gi|355685041|gb|AER97600.1| dihydrouridine synthase 2-like, SMM1-like protein [Mustela putorius
furo]
Length = 499
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/213 (54%), Positives = 154/213 (72%), Gaps = 1/213 (0%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN-DLLNTIDF 84
++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN + +
Sbjct: 12 SLCYRNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNGECGSGPRM 71
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
LD VVFRTC RE+++++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S G
Sbjct: 72 CVRLDDRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKG 131
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI A+ VHG
Sbjct: 132 GMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAVTVHG 191
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237
R + ERP+H E IR + + L IPVIANGGS
Sbjct: 192 RKREERPQHPVSCEAIRAIAEALSIPVIANGGS 224
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R Y + PK L C+ ++ P Y+TVQ ++LF S+VTV
Sbjct: 355 DTSGVIKMAVKFDRRAYSPQITPKMCLLEWCRKEKLAQPVYDTVQRPLDRLFCSVVTVAE 414
Query: 300 KQYTS 304
++Y S
Sbjct: 415 QKYQS 419
>gi|358342243|dbj|GAA49751.1| tRNA-dihydrouridine synthase 2, partial [Clonorchis sinensis]
Length = 1120
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 153/211 (72%), Gaps = 1/211 (0%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
K+IL PMVR++T P RLLAL YGAD V++EE++D KL+++ R VND L TID+V P DG
Sbjct: 504 GKVILGPMVRISTHPMRLLALRYGADYVFTEEIIDQKLLRSVRVVNDELGTIDYVLP-DG 562
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
+ FRT E+N++ILQ+GT D ERAL AA V++DV AIDINMGCPK +S+ GGMGAAL
Sbjct: 563 MITFRTSLAERNRVILQLGTPDAERALRAATMVQNDVLAIDINMGCPKDYSVKGGMGAAL 622
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
L+ P+ ILT L S L IPV+CKIR+ T+ L K +E+ G+ A+ VHGRT +ER
Sbjct: 623 LTQPEKVKEILTRLTSALRIPVTCKIRILPQLEKTLTLVKLIESTGVAALTVHGRTPSER 682
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
P+HRN E+I + + IPVIANGGS + +
Sbjct: 683 PQHRNHDEVIVAVASAVSIPVIANGGSWDTI 713
>gi|168053249|ref|XP_001779050.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669612|gb|EDQ56196.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 336
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 152/219 (69%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
A + Y K +LAPMVR+ LPFR+LA +YGAD+ Y EE+VDHK+V+ R VN+ L T+DF
Sbjct: 3 AELEYRGKHVLAPMVRVGGLPFRMLAAEYGADITYGEEIVDHKMVRCARVVNEDLGTVDF 62
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
V+ VVFRTC EK++++ Q+GT++ R L+AA V D+AA D+NMGCPK FS +G
Sbjct: 63 VEKSSNEVVFRTCDEEKHRVVFQVGTSEAVRCLKAANLVAGDIAAFDVNMGCPKSFSTSG 122
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMG+ALLS PD+ +ILTTL NL+IPV+CKIR+ +T+ L +R+E G+ A+ VHG
Sbjct: 123 GMGSALLSKPDVIHDILTTLKRNLNIPVTCKIRLLKTYGETVELARRIEKTGVSALAVHG 182
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
R +RPR + + I+ + L IPVIANG E D+
Sbjct: 183 RRVPDRPRDPAQWDGIQEVVSALSIPVIANGDVFEYSDF 221
>gi|156379115|ref|XP_001631304.1| predicted protein [Nematostella vectensis]
gi|156218342|gb|EDO39241.1| predicted protein [Nematostella vectensis]
Length = 440
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 121/212 (57%), Positives = 155/212 (73%), Gaps = 1/212 (0%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y NK LAPMVR+ TLP RLLAL YGADLVY+EE++D K+++T R N+LLNT+DFV
Sbjct: 2 YQNKYFLAPMVRIGTLPARLLALRYGADLVYTEEIIDFKMLRTTRVKNELLNTVDFVMS- 60
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
DG+VVFRTC E ++ Q+GTAD +RAL+ AK VE D+AA D+NMGCPK +S+ GGMGA
Sbjct: 61 DGTVVFRTCQEETTHVVFQVGTADADRALQVAKMVEKDIAAFDVNMGCPKDYSVKGGMGA 120
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL+ P+ ILTTL+ LSIPV+CKIR+ A+T+ LCK +E+ G+ A+ VHGR K
Sbjct: 121 ALLTEPEKVKKILTTLVKGLSIPVTCKIRILPTIAETVQLCKLIESTGVTALAVHGREKH 180
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
ER R E I+ + + IPVIANGGS +I
Sbjct: 181 ERSRQPVHTEYIQAVAAAVAIPVIANGGSLDI 212
>gi|186510837|ref|NP_190533.3| tRNA-dihydrouridine synthase 2 [Arabidopsis thaliana]
gi|332645048|gb|AEE78569.1| tRNA-dihydrouridine synthase 2 [Arabidopsis thaliana]
Length = 329
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 156/217 (71%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK++LAPMVR+ TL FR+LA +YGAD+ Y EE++DHKLVK ER++N T +FV+
Sbjct: 1 MDYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+VVF TC EK++++ Q+GT+D RAL+A++ V +DVA IDINMGCPK FS+ GGM
Sbjct: 61 KGTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLS P++ +IL TL NL +PV+CKIR+ + ADT+ L +R+E G+ A+ VHGR
Sbjct: 121 GAALLSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGRK 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
A+RPR + + I + L IPVIANG E D+
Sbjct: 181 IADRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDF 217
>gi|348666232|gb|EGZ06059.1| hypothetical protein PHYSODRAFT_319688 [Phytophthora sojae]
Length = 505
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 144/207 (69%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y NK+ L+PMVR TLP RLL+L YGADLVY EE+VD +++ R ND++N +DFV
Sbjct: 5 YENKVCLSPMVRSGTLPLRLLSLRYGADLVYGEEIVDKRIISAVRVPNDVVNAVDFVSRN 64
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
SVVFRTCP E K++ QIGTAD AL+AA+ V DVAA+DINMGCPK FS+ GGMGA
Sbjct: 65 GDSVVFRTCPEEAGKVVFQIGTADAVLALKAAEAVARDVAAVDINMGCPKHFSVQGGMGA 124
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL P++AC+I+ TL NL+IPVSCKIR+ DTI KRLE G A+GVH R
Sbjct: 125 ALLRKPEVACDIIKTLRRNLNIPVSCKIRLLPEIQDTIDTAKRLEDAGACAVGVHLRQIH 184
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANG 235
ERP ++ + + + L +PV+ANG
Sbjct: 185 ERPHNKASWDRLAPVVSALSVPVLANG 211
>gi|402592569|gb|EJW86497.1| dihydrouridine synthase domain-containing protein [Wuchereria
bancrofti]
Length = 438
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/226 (53%), Positives = 155/226 (68%), Gaps = 7/226 (3%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
MA++N Y+NK+ILAPMVR P R LAL YGADLVY+EE+VD KL+ ++R VND+
Sbjct: 1 MADSN----FYANKLILAPMVRAGRTPLRTLALQYGADLVYTEEIVDQKLLGSQRTVNDI 56
Query: 79 LNTIDFVDPLDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCP 137
L T D+ + V+ R C R EK K +LQIGT + ERA +KV +D+AAIDINMGCP
Sbjct: 57 LGTTDYT--CEDDVILRICNRVEKQKCVLQIGTNNAERAANVVRKVGNDIAAIDINMGCP 114
Query: 138 KQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI 197
K FS+ GGMGAALL P+ A I+ T +S +IP+SCKIRV + DT+ K LE CGI
Sbjct: 115 KPFSIAGGMGAALLGNPERAKEIVQTCVSVSTIPISCKIRVLDKQEDTLEFVKMLERCGI 174
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
AIGVHGR + ER + NR+ IR +T+ + +PVIANG S I +Y
Sbjct: 175 SAIGVHGRRRNERQSNMNRLNEIREITRVVSVPVIANGFSGSIKEY 220
>gi|312073196|ref|XP_003139411.1| dihydrouridine synthase domain-containing protein [Loa loa]
gi|307765423|gb|EFO24657.1| dihydrouridine synthase domain-containing protein [Loa loa]
Length = 439
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 151/220 (68%), Gaps = 3/220 (1%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y+ K+ILAPMVR P R LAL+YGADLVY+EE++D KL+ ++R +ND+L T D+
Sbjct: 7 YAKKLILAPMVRAGRTPLRTLALEYGADLVYTEEIIDQKLLGSQRTINDILGTTDYT--Y 64
Query: 89 DGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
+ VV R C R EK K +LQIGT D +RA KKVE+DVAAIDINMGCPK FS+ GGMG
Sbjct: 65 EDDVVLRICNRIEKQKCVLQIGTNDAQRAANVVKKVENDVAAIDINMGCPKPFSIAGGMG 124
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
AALL +P+ A I+ T +S +IPVSCK+RV DT+ K LE CG+ AIG+HGR +
Sbjct: 125 AALLGSPERAKEIVQTCVSISTIPVSCKMRVLDKREDTLEFVKMLERCGVSAIGIHGRRR 184
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247
+ER NR+ I +T+ + +PVIANG S I +Y +
Sbjct: 185 SERQSDMNRLNEIHEVTRVVSVPVIANGFSGSIKEYADIM 224
>gi|167526006|ref|XP_001747337.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774172|gb|EDQ87804.1| predicted protein [Monosiga brevicollis MX1]
Length = 487
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 154/224 (68%), Gaps = 4/224 (1%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y+NK++LAPMVR TLP RLLAL YGADLVYSEEL+DH+++ R N +L TID++D
Sbjct: 5 YANKVMLAPMVRAGTLPTRLLALRYGADLVYSEELIDHRMLACRRVENPVLQTIDYIDG- 63
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
DG V FRTC EKN++ILQIGT+DP+RA A+ + DVA ID+NMGCPK FS+ G MGA
Sbjct: 64 DGEVAFRTCAEEKNRVILQIGTSDPDRAARVAQMMAADVAGIDVNMGCPKPFSIKGDMGA 123
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL PD +ILT+L++ + P++CKIRV +T+ L ++ G+ A+G+HGR
Sbjct: 124 ALLRQPDRVRDILTSLVATTTKPITCKIRVLPTLEETLNLVNIIQDAGVAALGIHGRVPN 183
Query: 209 ERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
+RPR + E IR + + +IPVI NGGS ++ Y + +
Sbjct: 184 QRPREPITDYQYEAIRAVAKACRIPVICNGGSLDMDSYDDILAF 227
>gi|393906122|gb|EJD74188.1| dihydrouridine synthase domain-containing protein, variant [Loa
loa]
Length = 386
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 151/220 (68%), Gaps = 3/220 (1%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y+ K+ILAPMVR P R LAL+YGADLVY+EE++D KL+ ++R +ND+L T D+
Sbjct: 7 YAKKLILAPMVRAGRTPLRTLALEYGADLVYTEEIIDQKLLGSQRTINDILGTTDYT--Y 64
Query: 89 DGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
+ VV R C R EK K +LQIGT D +RA KKVE+DVAAIDINMGCPK FS+ GGMG
Sbjct: 65 EDDVVLRICNRIEKQKCVLQIGTNDAQRAANVVKKVENDVAAIDINMGCPKPFSIAGGMG 124
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
AALL +P+ A I+ T +S +IPVSCK+RV DT+ K LE CG+ AIG+HGR +
Sbjct: 125 AALLGSPERAKEIVQTCVSISTIPVSCKMRVLDKREDTLEFVKMLERCGVSAIGIHGRRR 184
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247
+ER NR+ I +T+ + +PVIANG S I +Y +
Sbjct: 185 SERQSDMNRLNEIHEVTRVVSVPVIANGFSGSIKEYADIM 224
>gi|301091909|ref|XP_002896129.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
gi|262094949|gb|EEY53001.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
Length = 480
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 144/207 (69%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y+NK+ L+PMVR TLP RLL+L YGADLVY EE++D +++ R ND++N +DFV
Sbjct: 5 YANKVCLSPMVRSGTLPLRLLSLRYGADLVYGEEIIDKRIISAVRVPNDVVNAVDFVSRN 64
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
SVVFRTC E K++ QIGTAD AL+AA+ V DVAA+DINMGCPK FS+ GGMGA
Sbjct: 65 GDSVVFRTCSEEAGKVVFQIGTADAVLALKAAEAVARDVAAVDINMGCPKHFSVQGGMGA 124
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL P++AC+I+ TL NL+IPVSCKIR+ DT+ L +RLE G A+GVH R
Sbjct: 125 ALLRKPEVACDIMKTLRRNLNIPVSCKIRLLPEIQDTVDLARRLEDAGACAVGVHMRQTH 184
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANG 235
ERP + + + + L +PV+ANG
Sbjct: 185 ERPHDKASWDRLAPVVSALSVPVLANG 211
>gi|444709333|gb|ELW50354.1| tRNA-dihydrouridine synthase 2-like protein [Tupaia chinensis]
Length = 467
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/192 (57%), Positives = 146/192 (76%), Gaps = 1/192 (0%)
Query: 46 FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKII 105
RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+DFV P D VVFRTC RE+N+++
Sbjct: 1 MRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAP-DDRVVFRTCEREQNRVV 59
Query: 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI 165
Q+GT+D ERAL A+ VE+DVA IDINMGCPK++S GGMGAALLS PD IL+TL+
Sbjct: 60 FQMGTSDAERALAVARLVENDVAGIDINMGCPKEYSTKGGMGAALLSDPDKIEKILSTLV 119
Query: 166 SNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ 225
PV+CKIR+ + DT++L KR+E+ GI AI VHGR + ERP+H E+I+ + +
Sbjct: 120 KGTRRPVTCKIRILSSLEDTLSLVKRIESTGIAAITVHGRKREERPQHPVSCEVIKAIAE 179
Query: 226 HLKIPVIANGGS 237
L IPVIANGGS
Sbjct: 180 TLSIPVIANGGS 191
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQY--EKLFRSLVTVNG 299
D GV + F R Y + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 322 DTSGVIKMAVKFDRRAYSPQITPKMCLLEWCRREKLAQPVYETVQRPIDRLFCSVVTVAE 381
Query: 300 KQYTS 304
++Y S
Sbjct: 382 QKYQS 386
>gi|357017445|gb|AET50751.1| hypothetical protein [Eimeria tenella]
Length = 553
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 144/207 (69%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y++ ILAPMVR++TLPFRL L YGAD+VY+EE+VD KL+ T+R +N TI+++
Sbjct: 215 YNSSWILAPMVRISTLPFRLECLKYGADVVYTEEIVDRKLLDTKRHINKDFGTIEYISKS 274
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
D +F TC EK K+ILQ+GTAD RAL+AA DVAA+DINMGCPK FS+ GGMGA
Sbjct: 275 DRRCIFSTCELEKGKVILQLGTADATRALQAATVAIQDVAAVDINMGCPKSFSVKGGMGA 334
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL TPD+A +IL TL+ N+ PV+CKIR+ +T+ ++ E+ GI AI VH R +
Sbjct: 335 ALLQTPDLAMDILKTLVRNVPCPVTCKIRLLETMEETVDFARKCESTGIAAIAVHARKRH 394
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANG 235
ERP HR + L LKIP+IANG
Sbjct: 395 ERPAHRANWQAFPLLRSALKIPLIANG 421
>gi|168056695|ref|XP_001780354.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668196|gb|EDQ54808.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 332
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 149/217 (68%), Gaps = 3/217 (1%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y K ILAPMVR+ LPFR+LA YGAD+ Y EE+VDHK++ ER N+ L T+DFVD
Sbjct: 1 MDYRGKYILAPMVRVGGLPFRMLAAGYGADITYGEEIVDHKMLCCERVENEALGTVDFVD 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
++FRTC EK++++ Q+GTAD R L+ A V D+AA D+NMGCPK FS +GGM
Sbjct: 61 KKSKDIIFRTCDAEKHRVVFQVGTADAVRCLKVANMVAGDIAAFDVNMGCPKSFSTSGGM 120
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
G+ALL P++ +ILTTL NL+IPV+CK+R+ +T+ L +R+E G+ A+ VHGR
Sbjct: 121 GSALLDKPELIHDILTTLRRNLNIPVTCKVRLLKTCGETVELSRRIEKTGVSALAVHGRR 180
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
A+RPR + IR + L IPVIANG ++ DY
Sbjct: 181 VADRPRDPANWDGIREVVSALSIPVIANG---DVFDY 214
>gi|441597671|ref|XP_003263057.2| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
[Nomascus leucogenys]
Length = 488
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 143/190 (75%), Gaps = 1/190 (0%)
Query: 48 LLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQ 107
LLALDYGAD+VY EEL+D K+++ +R VN++L+T+DFV P D VVFRTC RE+N+++ Q
Sbjct: 24 LLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAP-DDRVVFRTCEREQNRVVFQ 82
Query: 108 IGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167
+GT+D ERAL A+ VE+DVA ID+NMGCPK++S GGMGAALLS PD IL+TL+
Sbjct: 83 MGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKG 142
Query: 168 LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL 227
PV+CKIR+ + DT++L KR+E GI AI VHGR + ERP+H E+I+ + L
Sbjct: 143 TRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVSCEVIKAIADTL 202
Query: 228 KIPVIANGGS 237
IPVIANGGS
Sbjct: 203 SIPVIANGGS 212
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 343 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 402
Query: 300 KQYTS 304
++Y S
Sbjct: 403 QKYQS 407
>gi|242005452|ref|XP_002423579.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
gi|212506727|gb|EEB10841.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
Length = 409
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 103/176 (58%), Positives = 134/176 (76%)
Query: 77 DLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGC 136
++L T+DF+D DG+++FRTC +EK K+ILQ+GT DPERAL+ K VE+DVA IDINMGC
Sbjct: 12 EVLETVDFIDQTDGTIIFRTCKKEKGKVILQLGTNDPERALKVGKLVENDVAGIDINMGC 71
Query: 137 PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACG 196
PK+FS+ GGMGAALL PD A IL L++NL IPV+CK+RV ++ TI LC+RLE G
Sbjct: 72 PKEFSIKGGMGAALLDKPDKAVEILEKLVNNLKIPVTCKVRVLKDKNKTIELCQRLEKTG 131
Query: 197 IIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
I AI +HGRTK ERP+H N+ ++I+ + + LKIPVIANGGSKEI +Y + A
Sbjct: 132 IAAIAIHGRTKDERPQHPNKNDIIKAVAEVLKIPVIANGGSKEIDNYNDILKFKEA 187
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 246 VFSLNCAFLRNHYPVEK-LPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTS 304
V ++CAFLR+ +P + LPKT L +++ E PKY T Q +KLF+S+VTVNGK Y S
Sbjct: 313 VIRVSCAFLRSIFPSDNDLPKTKLLTWARHRNLEPPKYTTTQEDKLFQSIVTVNGKNYGS 372
Query: 305 KF 306
+
Sbjct: 373 SY 374
>gi|221501948|gb|EEE27699.1| dihydrouridine synthase domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 653
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 139/207 (67%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y K ILAPMVR+ LPFRL L YGADLVY+EE +DHKL+ + R N+ +TIDF+
Sbjct: 252 YCGKWILAPMVRIGILPFRLECLKYGADLVYTEETIDHKLLNSVRTFNEDFSTIDFLHKS 311
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+ + VF TC E+ K+++Q+GT+D RAL+AA V DVAA+D+NMGCPK FS+ GGMGA
Sbjct: 312 EKTCVFSTCLEERGKVVMQLGTSDATRALKAAMLVAQDVAAVDVNMGCPKSFSINGGMGA 371
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL TP IA +IL TL NL IPV+CKIR+ TI + E CGI AI +H R
Sbjct: 372 ALLKTPLIATDILKTLRRNLDIPVTCKIRLLDTIHKTIDFARLCENCGIEAIAIHARETH 431
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANG 235
ERP HR ++ L L IP+IANG
Sbjct: 432 ERPSHRAHWDLFPALKSSLAIPLIANG 458
>gi|237844349|ref|XP_002371472.1| dihydrouridine synthase domain-containing protein [Toxoplasma
gondii ME49]
gi|211969136|gb|EEB04332.1| dihydrouridine synthase domain-containing protein [Toxoplasma
gondii ME49]
gi|221481251|gb|EEE19648.1| dihydrouridine synthase domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 653
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 139/207 (67%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y K ILAPMVR+ LPFRL L YGADLVY+EE +DHKL+ + R N+ +TIDF+
Sbjct: 252 YCGKWILAPMVRIGILPFRLECLKYGADLVYTEETIDHKLLNSVRTFNEDFSTIDFLHKS 311
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+ + VF TC E+ K+++Q+GT+D RAL+AA V DVAA+D+NMGCPK FS+ GGMGA
Sbjct: 312 EKTCVFSTCLEERGKVVMQLGTSDATRALKAAMLVAQDVAAVDVNMGCPKSFSINGGMGA 371
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL TP IA +IL TL NL IPV+CKIR+ TI + E CGI AI +H R
Sbjct: 372 ALLKTPLIATDILKTLRRNLDIPVTCKIRLLDTIHKTIDFARLCENCGIEAIAIHARETH 431
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANG 235
ERP HR ++ L L IP+IANG
Sbjct: 432 ERPSHRAHWDLFPALKSSLAIPLIANG 458
>gi|325189578|emb|CCA24064.1| tRNAdihydrouridine synthase putative [Albugo laibachii Nc14]
Length = 427
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 145/208 (69%), Gaps = 1/208 (0%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y N + LAPMVR TLP RLL+L YGADLVYSEE++D K++ TER N +LNT+DFV
Sbjct: 5 YENAVCLAPMVRAGTLPLRLLSLRYGADLVYSEEIIDKKIIATERIENPILNTVDFVSVN 64
Query: 89 D-GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
+ SVVFRT EK++++ Q+GT+DP A++AA+KV DVAAID+NMGCPK FS+ GGMG
Sbjct: 65 NRDSVVFRTSKEEKDRVVFQMGTSDPILAIKAAQKVARDVAAIDVNMGCPKHFSIQGGMG 124
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
AALL P +A +I+ L NL IPVSCKIRV + TI K++E G AIGVHGR
Sbjct: 125 AALLQKPQLAFDIIKALKQNLEIPVSCKIRVLEDTNATIEFVKKMEQAGADAIGVHGRQT 184
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
ERP + I+ + + +PV+ANG
Sbjct: 185 HERPEDPASWDSIKPVVSAVSVPVLANG 212
>gi|359497720|ref|XP_003635619.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase
2-like, partial [Vitis vinifera]
Length = 214
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 142/194 (73%)
Query: 42 NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREK 101
TLPFRLLA YGAD+ Y EE++DHKL+K ER++N+ + +IDFV+ +VVFRTC EK
Sbjct: 6 GTLPFRLLAAQYGADITYGEEIIDHKLIKCERRLNEDIGSIDFVEKGTHNVVFRTCHEEK 65
Query: 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161
N+++ Q+GT++ ERAL AA+ V DVAA+DINMGCPK FS++GGMGAALL+ P++ +IL
Sbjct: 66 NRVVFQMGTSNAERALTAAQIVCKDVAAVDINMGCPKSFSISGGMGAALLTRPELIHDIL 125
Query: 162 TTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIR 221
T L NL IPV+CKIR+ + +T+ L +++E G+ A+ VHGR A+RPR + I
Sbjct: 126 TILKRNLDIPVTCKIRLLKSSQETVELAQQIEKTGVAALAVHGRRIADRPRDPAKWNEIA 185
Query: 222 TLTQHLKIPVIANG 235
+ L IPVIANG
Sbjct: 186 DVVAALSIPVIANG 199
>gi|401405469|ref|XP_003882184.1| GH10224, related [Neospora caninum Liverpool]
gi|325116599|emb|CBZ52152.1| GH10224, related [Neospora caninum Liverpool]
Length = 663
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 140/207 (67%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y K ILAPMVR+ LPFRL L YGADLVY+EE +DHKL+ + RK+N+ +TIDFV
Sbjct: 263 YRGKWILAPMVRIGILPFRLECLKYGADLVYTEETIDHKLLNSVRKINEDFSTIDFVHKG 322
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+ + VF TC E+ K+++Q+GT+D RAL AA V DVAAID+NMGCPK FS+ GGMGA
Sbjct: 323 EKTCVFSTCLEERGKVVMQLGTSDATRALRAAALVAQDVAAIDVNMGCPKSFSINGGMGA 382
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL TP IA +IL TL NL IPV+CKIR+ TI + E CG+ AI +H R
Sbjct: 383 ALLKTPLIATDILKTLRRNLDIPVTCKIRLLDTIHKTIDFARMCENCGVEAIAIHARETH 442
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANG 235
ERP HR ++ L L IPVIANG
Sbjct: 443 ERPSHRAHWDIFPALKSSLSIPVIANG 469
>gi|159469612|ref|XP_001692957.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277759|gb|EDP03526.1| predicted protein [Chlamydomonas reinhardtii]
Length = 283
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 146/214 (68%), Gaps = 5/214 (2%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y +K++LAPMVR+ P RLLA YGAD+VYSEELV +++ + R VN+ L +IDF+D
Sbjct: 1 MEYRDKLVLAPMVRVGMQPMRLLAASYGADIVYSEELVAQRVIASTRVVNEELQSIDFLD 60
Query: 87 --PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
G V+FRT E+ +++ Q+G AD AL+AA+ V DVA + +NMGCPK FSL G
Sbjct: 61 RGGEHGRVMFRTTAEERPRLVFQLGAADAVLALQAAQVVAGDVAEVGLNMGCPKAFSLQG 120
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALL P+IA +I+ TL NL+IPVSCKIR+ + DT+ L +RL ACGI A+ VHG
Sbjct: 121 GMGAALLRKPEIAEDIMKTLHRNLNIPVSCKIRLLDTDQDTVELARRLAACGINALAVHG 180
Query: 205 RTKAERPRHRNRIEMIRTLTQHLK---IPVIANG 235
RT +RPR + IR + L +PV+ANG
Sbjct: 181 RTTQQRPRDPAHWDPIRLVVDALAPDGVPVVANG 214
>gi|299472929|emb|CBN80498.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 569
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/232 (46%), Positives = 148/232 (63%), Gaps = 4/232 (1%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
+ A+ Y K+ILAPMVR TLPFR LAL YGAD V++EE++D ++V R N +L T+
Sbjct: 5 DAADQLYRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTV 64
Query: 83 DFVDPLDGSVV---FRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
D+V+ + F+TCP E+ +++ QIGT D AL AA+ VE DVAA+DINMGCPK
Sbjct: 65 DYVEKRGKKGIATPFQTCPALERGRLVYQIGTGDATNALRAAQHVERDVAAVDINMGCPK 124
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198
+FSL GGMGAALL P +A +I+ TL NLS+PVS KIR+ +T+ +R+E G
Sbjct: 125 RFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGAC 184
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
A+ VH R + P + R E +R + + IPVIANG D G+ +L+
Sbjct: 185 ALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDVYTRADMAGIKALS 236
>gi|255088371|ref|XP_002506108.1| predicted protein [Micromonas sp. RCC299]
gi|226521379|gb|ACO67366.1| predicted protein [Micromonas sp. RCC299]
Length = 353
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 145/221 (65%), Gaps = 6/221 (2%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y K ILAPMVR+NT+P RLLA +YGAD+VYSEEL+D K++K +R N T+DF+DP
Sbjct: 7 YKGKNILAPMVRVNTMPTRLLAAEYGADIVYSEELIDRKMMKVKRVENTAWGTVDFIDPD 66
Query: 89 ----DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
D +VVF+T P EKN++++Q+GT D RAL++A +DVAAIDINMGCP +FS
Sbjct: 67 ATNDDTAVVFQTTPEEKNRLVMQLGTGDATRALQSAMVAVNDVAAIDINMGCPLKFSTAS 126
Query: 145 GMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
G G+ALL P+ +ILTTL NL V+CKIR+ T+ L + +E CG+ A GV
Sbjct: 127 GAGSALLKKPETVHDILTTLRRNLPAETHVTCKIRLLETIEQTVELARVIEKCGVSAFGV 186
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
HGR +RPR + I+ + + + PVIANG E D+
Sbjct: 187 HGRYVGQRPRDAAHWDKIKQVVESVSCPVIANGDVFEYSDF 227
>gi|384486016|gb|EIE78196.1| hypothetical protein RO3G_02900 [Rhizopus delemar RA 99-880]
Length = 362
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 153/231 (66%), Gaps = 6/231 (2%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
+I+Y+NKI+LAPMVR+ TLP RLLAL+YGADLV++EELVD +++ + R+ N T+D+
Sbjct: 7 DIDYANKIVLAPMVRIGTLPMRLLALEYGADLVWTEELVDKRIIGSVRQYNKATGTVDYR 66
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
++ F T P EK K+ILQ+GTADP+ AL+AA ++ DVA +D+N GCPK+FS+ GG
Sbjct: 67 KG--SALTFSTHPNEKGKVILQLGTADPDLALKAALTLKQDVAGVDLNCGCPKKFSVQGG 124
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
MGAALL+ PD IL L+ + +PVSCKIR+ + TI L K + A G+ A+ VH R
Sbjct: 125 MGAALLTDPDRLKKILENLVQHSGMPVSCKIRLLETQQQTIELVKMIAATGVKALTVHCR 184
Query: 206 TKAERPRHRNRIEMIRTLTQHLK----IPVIANGGSKEIVDYGGVFSLNCA 252
T+ RP + + + ++ + + +K IPVI NG + D V L A
Sbjct: 185 TREMRPSQKAQWDRLKEVVEAVKSVRDIPVIVNGDVWQWSDVEKVKELTNA 235
>gi|268570080|ref|XP_002640687.1| Hypothetical protein CBG19749 [Caenorhabditis briggsae]
Length = 436
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 143/216 (66%), Gaps = 3/216 (1%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y+ K ILAPMVR P RLL L YGADLVY+EE+VD KL++ R VN+ L TID+ +
Sbjct: 5 YTKKKILAPMVRAGRTPLRLLCLKYGADLVYTEEIVDKKLIEATRVVNEALGTIDYRNGD 64
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
D ++ R P EK K ILQIGT E+A + A+ V DVA ID+NMGCPK FS+ GMGA
Sbjct: 65 D--IILRLAPEEKGKCILQIGTNSGEKAAKIAEIVGDDVAGIDVNMGCPKPFSIHCGMGA 122
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL+ + ILT L + +PV+CKIRV N DT+ L + +E CG++A+GVHGR +
Sbjct: 123 ALLTQTEKIVGILTALKAAAKVPVTCKIRVLDNPEDTLKLVREIEKCGVVALGVHGRRRD 182
Query: 209 ERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDY 243
ER R R E IR + + ++ IP+IANG S EI Y
Sbjct: 183 ERQPDRCRYEEIREVVKTIQSIPIIANGFSGEIERY 218
>gi|308470958|ref|XP_003097711.1| hypothetical protein CRE_14205 [Caenorhabditis remanei]
gi|308239829|gb|EFO83781.1| hypothetical protein CRE_14205 [Caenorhabditis remanei]
Length = 436
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 147/225 (65%), Gaps = 3/225 (1%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
YSNK ILAPMVR P RLL L YGADL Y+EE+VD KL+++ R +ND L TID+ +
Sbjct: 5 YSNKKILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIESTRVINDALGTIDYRNGD 64
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
D ++ R P EK + ILQIGT E+A + A+ V DVA ID+NMGCPK FS+ GMGA
Sbjct: 65 D--IILRLAPEEKGRCILQIGTNSGEKAAKIAEIVGDDVAGIDVNMGCPKPFSIHCGMGA 122
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL+ + +IL +L + +PV+CKIRV N DT+ L + +E CG+ A+GVHGR +
Sbjct: 123 ALLTQTEKIIDILKSLKAAAKVPVTCKIRVLDNPEDTLKLVREIEKCGVSALGVHGRRRD 182
Query: 209 ERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNCA 252
ER + RIE IR +++ + IP+IANG S EI + + A
Sbjct: 183 ERQPDQCRIEEIREVSRTITTIPIIANGFSGEIEQFSDIEKWRSA 227
>gi|308801569|ref|XP_003078098.1| unnamed protein product [Ostreococcus tauri]
gi|116056549|emb|CAL52838.1| unnamed protein product [Ostreococcus tauri]
Length = 343
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 152/242 (62%), Gaps = 9/242 (3%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
M+ + A Y+ K + APMVR++TL RL+A +YGADLVYSEELVD + VK R+ N
Sbjct: 1 MSVPDGAREFYTGKNVCAPMVRVSTLATRLVAHEYGADLVYSEELVDKRFVKCRREENAE 60
Query: 79 LNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
L TIDF+D G + FRT P EK +++ Q+GT+ AL++A+ V DVAAID+NMGCPK
Sbjct: 61 LGTIDFLDS-KGVLTFRTIPEEKERLVFQVGTSSAALALQSAQLVAGDVAAIDVNMGCPK 119
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACG 196
FS +GGMGA LLS PD+ +ILTTL NL + V+CKIR+ E T L K +E+CG
Sbjct: 120 HFSTSGGMGARLLSQPDLIRDILTTLRRNLPETTHVTCKIRLLECEKSTAELAKMIESCG 179
Query: 197 IIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY------GGVFSLN 250
+ A VHGR ++RPR +I+ + + + PVIANG D+ G S
Sbjct: 180 VSAFAVHGRYISQRPREPAHWNLIKNVVEAVDCPVIANGDVMRYEDFERIRKETGAASAM 239
Query: 251 CA 252
CA
Sbjct: 240 CA 241
>gi|341876405|gb|EGT32340.1| hypothetical protein CAEBREN_15216 [Caenorhabditis brenneri]
Length = 439
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 144/219 (65%), Gaps = 3/219 (1%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y NK ILAPMVR P RLL L YGADL Y+EE+VD KL++ R VN+ L TID+ +
Sbjct: 8 YRNKKILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRVVNEALGTIDYRN-- 65
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
++ R P EK + ILQIGT E+A + A+ + DVA ID+NMGCPK FS+ GMGA
Sbjct: 66 GDEIILRLAPEEKGRCILQIGTNCGEKAAKVAQIIGDDVAGIDVNMGCPKPFSIHCGMGA 125
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL+ + NILT+L + +PV+CKIRV N DTI L K +E CG+ A+GVHGR +
Sbjct: 126 ALLTQTEKIINILTSLKAAARVPVTCKIRVLDNREDTIKLVKEIEKCGVSALGVHGRRRD 185
Query: 209 ERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGV 246
ER + R+E IR + + + IPVIANG S EI ++ +
Sbjct: 186 ERQPDQCRVEEIREVARTITTIPVIANGFSGEIEEFSDI 224
>gi|426382645|ref|XP_004057914.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Gorilla
gorilla gorilla]
Length = 464
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/181 (55%), Positives = 135/181 (74%), Gaps = 1/181 (0%)
Query: 57 LVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERA 116
L+ +EL+D K+++ +R VN++L+T+DFV P D VVFRTC RE+N+++ Q+GT+D ERA
Sbjct: 9 LIPLQELIDLKMIQCKRVVNEVLSTVDFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERA 67
Query: 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176
L A+ VE+DVA ID+NMGCPKQ+S GGMGAALLS PD IL+TL+ IPV+CKI
Sbjct: 68 LAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEKILSTLVKGTRIPVTCKI 127
Query: 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
R+ + DT++L KR+E GI AI VHGR + ERP+H E+I+ ++ L IPVIANGG
Sbjct: 128 RILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVSCEVIKAISDTLSIPVIANGG 187
Query: 237 S 237
S
Sbjct: 188 S 188
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 319 DTSGVIKMAIKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 378
Query: 300 KQYTS 304
++Y S
Sbjct: 379 QKYQS 383
>gi|313233300|emb|CBY24415.1| unnamed protein product [Oikopleura dioica]
Length = 355
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 141/208 (67%), Gaps = 2/208 (0%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
ILAPMVR+ TLP RLL L+ GADLVY+EE++DH+L+ RK ++F + + V
Sbjct: 6 ILAPMVRIGTLPTRLLCLEEGADLVYTEEIIDHRLMDC-RKFEHKNGLVEFKLTAEDNPV 64
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+TC +EK K+ILQ+GTADP RA++AAK + ++ +D+NMGCPK +S GGMGAA+L T
Sbjct: 65 LQTCAKEKEKVILQLGTADPNRAVKAAKLCQDHISGVDVNMGCPKAYSTKGGMGAAMLKT 124
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
PD+A +IL L+ L IPV+CKIR +T+ KR+E GI A+ +HGR K ER R
Sbjct: 125 PDLAESILKALVQELDIPVTCKIRCLKTLEETVEFAKRMEKTGIAALAIHGRQKTERSRA 184
Query: 214 RN-RIEMIRTLTQHLKIPVIANGGSKEI 240
R I + + LKIPV+ANGGS EI
Sbjct: 185 DPCRSLWIAEVAKSLKIPVLANGGSGEI 212
>gi|428169187|gb|EKX38123.1| hypothetical protein GUITHDRAFT_77411 [Guillardia theta CCMP2712]
Length = 245
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 141/211 (66%), Gaps = 1/211 (0%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++++ N ++LAPMVR +TLP R+LALDYGAD V++EE+V K+ R +N+ L T++F
Sbjct: 6 SLDFQNAVVLAPMVRASTLPLRMLALDYGADFVWTEEIVARKIALCSRFLNERLGTVEFY 65
Query: 86 DPLDGSV-VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
P VF+TC E+ K+I QIGT ALEAA V +DVAAID+NMGCPK FS+TG
Sbjct: 66 SPDAPHFRVFQTCEAEREKVIFQIGTNSAREALEAAMVVVNDVAAIDLNMGCPKHFSVTG 125
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALLS P+ A +I+ TL N+++PV+ KIR+ ++T L KRLE+ G+ AI VH
Sbjct: 126 GMGAALLSKPETAADIIKTLKRNINLPVTAKIRLLKTRSETAELMKRLESAGVDAITVHC 185
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
R A RP R E + + +PVI NG
Sbjct: 186 RYVATRPHERALWEELEHCVSAVSVPVIGNG 216
>gi|313212119|emb|CBY16141.1| unnamed protein product [Oikopleura dioica]
Length = 250
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 141/208 (67%), Gaps = 2/208 (0%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
ILAPMVR+ TLP RLL L+ GADLVY+EE++DH+L+ RK ++F + + V
Sbjct: 6 ILAPMVRIGTLPTRLLCLEEGADLVYTEEIIDHRLMDC-RKFEHKNGLVEFKLTAEDNPV 64
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+TC +EK K+ILQ+GTADP RA++AAK + ++ +D+NMGCPK +S GGMGAA+L T
Sbjct: 65 LQTCAKEKEKVILQLGTADPNRAVKAAKLCQDHISGVDVNMGCPKAYSTKGGMGAAMLKT 124
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
PD+A +IL L+ L IPV+CKIR +T+ KR+E GI A+ +HGR K ER R
Sbjct: 125 PDLAESILKALVQELDIPVTCKIRCLKTLEETVEFAKRMEKTGIAALAIHGRQKTERSRA 184
Query: 214 RN-RIEMIRTLTQHLKIPVIANGGSKEI 240
R I + + LKIPV+ANGGS EI
Sbjct: 185 DPCRSLWIAEVAKSLKIPVLANGGSGEI 212
>gi|359497748|ref|XP_003635627.1| PREDICTED: tRNA-dihydrouridine synthase 2-like, partial [Vitis
vinifera]
Length = 203
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/188 (52%), Positives = 137/188 (72%)
Query: 48 LLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQ 107
LLA YGAD+ Y EE++DHKL+K ER++N+ + +IDFV+ +VVFRTC EKN+++ Q
Sbjct: 1 LLAAQYGADITYGEEIIDHKLIKCERRLNEDIGSIDFVEKGTHNVVFRTCHEEKNRVVFQ 60
Query: 108 IGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167
+GT++ ERAL AA+ V DVAA+DINMGCPK FS++GGMGAALL+ P++ +ILT L N
Sbjct: 61 MGTSNAERALTAAQIVCKDVAAVDINMGCPKSFSISGGMGAALLTRPELIHDILTILKRN 120
Query: 168 LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL 227
L IPV+CKIR+ + +T+ L +++E G+ A+ VHGR A+RPR + I + L
Sbjct: 121 LDIPVTCKIRLLKSSQETVELAQQIEKTGVAALAVHGRRIADRPRDPAKWNEIADVVAAL 180
Query: 228 KIPVIANG 235
IPVIANG
Sbjct: 181 SIPVIANG 188
>gi|328871537|gb|EGG19907.1| tRNA-dihydrouridine synthase 2-like protein [Dictyostelium
fasciculatum]
Length = 375
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 147/204 (72%), Gaps = 6/204 (2%)
Query: 35 LAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94
+APMVR++TLP RLLAL G D+ YSEEL+D KL T+R VN+ LNTID++ D +VV+
Sbjct: 1 MAPMVRVSTLPMRLLALRQGCDIAYSEELIDVKLSSTKRVVNEKLNTIDYISK-DRAVVY 59
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154
RTC +++N + LQ+GTA AL+AA+ V +D+ AIDINMGCPK FS+ GGMG+ALLS P
Sbjct: 60 RTCEQDRNNV-LQLGTASSVSALKAAQHVVNDICAIDINMGCPKFFSVQGGMGSALLSKP 118
Query: 155 DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR-- 212
+ +ILTTLI NL +PV+CKIR+ + +TI L K +E+ G+ AIGVH R ERP+
Sbjct: 119 ETIKDILTTLIRNLPVPVTCKIRLLKTDQETIDLLKIIESTGVSAIGVHMREIPERPKDP 178
Query: 213 -HRNRIEMIRTLTQHLKIPVIANG 235
H +R+ I + + +P+IANG
Sbjct: 179 AHWDRLATILANSSY-SVPIIANG 201
>gi|328770050|gb|EGF80092.1| hypothetical protein BATDEDRAFT_35061 [Batrachochytrium
dendrobatidis JAM81]
Length = 507
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 148/215 (68%), Gaps = 7/215 (3%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y++K+ILAPMVR++TLP RLLAL YGAD+VYS E+VD +L++++R ND TID+VD
Sbjct: 177 LTYASKLILAPMVRVSTLPLRLLALKYGADIVYSPEIVDRRLMRSQRIQNDKFGTIDYVD 236
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
GS+ R P E+ ++++Q+G+++P A+ AA+KV DV ID+N GCPK+FS++GGM
Sbjct: 237 D-SGSLNLRIHPNERGRLVVQLGSSNPVFAVLAAQKVAGDVDGIDLNCGCPKKFSVSGGM 295
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD------TIALCKRLEACGIIAI 200
G+ALL PD ILT L+S++SIPV+CKIR+ TI L +RLE GI AI
Sbjct: 296 GSALLENPDTLEAILTALVSSVSIPVTCKIRLLDPREGKTSIERTIELMQRLEKTGISAI 355
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VH R ERPR ++ ++ + IPVIANG
Sbjct: 356 AVHCRFIHERPRQPAHWDVFEQISNCISIPVIANG 390
>gi|330801859|ref|XP_003288940.1| hypothetical protein DICPUDRAFT_34883 [Dictyostelium purpureum]
gi|325080971|gb|EGC34504.1| hypothetical protein DICPUDRAFT_34883 [Dictyostelium purpureum]
Length = 384
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/212 (51%), Positives = 146/212 (68%), Gaps = 6/212 (2%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK I+APMVR++T P R+LA YG D+VYSEEL+D K+ + R VN+ LNTIDFV
Sbjct: 14 MDYYNKKIMAPMVRVSTYPMRILAQRYGCDIVYSEELIDFKVKSSHRVVNEKLNTIDFVQ 73
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
D ++V+RT +KN + +Q+GT ALEAA V DV AIDINMGCPK FS+ GGM
Sbjct: 74 K-DNNLVYRTSAIDKNNV-MQLGTGSAVTALEAASIVARDVCAIDINMGCPKYFSIQGGM 131
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
G+ALLS P+ +ILTTL NL+ P++CKIR+ + +TI L + +E+ G+ AIGVH R
Sbjct: 132 GSALLSKPETIKDILTTLKRNLNKPITCKIRLLSTDQETIDLLRVIESTGVSAIGVHCRM 191
Query: 207 KAERPR---HRNRIEMIRTLTQHLKIPVIANG 235
ERPR H +R+E I + +P+IANG
Sbjct: 192 IPERPRDPAHWDRLENILS-NASFSVPIIANG 222
>gi|17510279|ref|NP_493554.1| Protein Y54E5A.6 [Caenorhabditis elegans]
gi|3925277|emb|CAA21662.1| Protein Y54E5A.6 [Caenorhabditis elegans]
Length = 436
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 143/216 (66%), Gaps = 3/216 (1%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y NK ILAPMVR P RLL L YGADL Y+EE+VD KL++ R VN+ L TID+ +
Sbjct: 5 YRNKKILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRVVNEALGTIDYRNGD 64
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
D ++ R P EK + ILQIGT E+A + A+ V DVA ID+NMGCPK FS+ GMGA
Sbjct: 65 D--IILRLAPEEKGRCILQIGTNSGEKAAKIAQIVGDDVAGIDVNMGCPKPFSIHCGMGA 122
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL+ + +ILT+L S +PV+CKIRV + DT+ L + +E C + A+GVHGR +
Sbjct: 123 ALLTQTEKIVDILTSLKSAAKVPVTCKIRVLDDPEDTLKLVQEIEKCRVSALGVHGRRRD 182
Query: 209 ERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDY 243
ER + RI+ IR + Q ++ IPVI+NG S EI Y
Sbjct: 183 ERQPDKCRIDEIRDVAQAVQSIPVISNGLSDEIEQY 218
>gi|320165665|gb|EFW42564.1| tRNA dihydrouridine synthase Dus2 [Capsaspora owczarzaki ATCC
30864]
Length = 503
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 137/196 (69%), Gaps = 3/196 (1%)
Query: 53 YGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTAD 112
YGADLVYSEE++DH++++ +R N L+++DFV P DG+V+FRTCP E+ K++ Q+GTAD
Sbjct: 9 YGADLVYSEEIIDHRMIRAKRTYNPHLHSVDFVQP-DGTVIFRTCPAERGKLVFQMGTAD 67
Query: 113 PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--I 170
P RA+ A+ V HDV A+D+NMGCPK +S GGMGAALL PD ILT L++ + +
Sbjct: 68 PARAVAVARLVMHDVLAVDVNMGCPKSYSTDGGMGAALLKHPDKIHAILTALVAAVGEHV 127
Query: 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIP 230
V+CKIRV +T+AL K +E+ G+ A+ VH R ERPR +M++ + L IP
Sbjct: 128 HVTCKIRVLATVEETVALAKMIESTGVSALAVHCRLTHERPREPGHPDMLKPIVDALSIP 187
Query: 231 VIANGGSKEIVDYGGV 246
VIANGGS +IV + +
Sbjct: 188 VIANGGSLDIVSHDDI 203
>gi|322782637|gb|EFZ10516.1| hypothetical protein SINV_13804 [Solenopsis invicta]
Length = 401
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 126/171 (73%)
Query: 77 DLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGC 136
D+L TID++D DG+VVFRTC RE+ I+LQIGT+DP RA + A+ VE+DVA ID+NMGC
Sbjct: 1 DVLGTIDYIDKTDGTVVFRTCSREREHIVLQIGTSDPARAAQVARMVENDVAGIDVNMGC 60
Query: 137 PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACG 196
PK+FS+ GGMGAALLS + A +IL LI ++IP+SCKIRV + +T+ LC L + G
Sbjct: 61 PKKFSMLGGMGAALLSDMEKATDILRKLIETVTIPISCKIRVLPDLEETLRLCNTLASTG 120
Query: 197 IIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247
I AI VHGRT ERP+H NR +++ ++ L IPVIANGGSK+I + +
Sbjct: 121 IAAIAVHGRTIEERPQHPNRNHILKQISTALSIPVIANGGSKDIQKHSDIL 171
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
+ C + + + R K++ +++ + + + L + + K + V + CA
Sbjct: 252 QICEVWGLDDYCRAKSKEFQNKGLLGRFQITPEILDKDIDNSISHKRKIQEEDVSLMRCA 311
Query: 253 FLRNHYPVEK-LPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSKF 306
FLRN Y + LPKT L K R ++P Y T Q KLF S+VTV+G++Y S F
Sbjct: 312 FLRNSYVTDSDLPKTRLLKWTKENRKKMPIYNTRQENKLFCSVVTVDGRKYGSSF 366
>gi|410983803|ref|XP_003998226.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Felis
catus]
Length = 505
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 97/181 (53%), Positives = 133/181 (73%), Gaps = 1/181 (0%)
Query: 57 LVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERA 116
L+ +EL+D K+++ +R VN++L+T+DFV P D VVFRTC RE+++++ Q+GT+D ERA
Sbjct: 50 LIPLQELIDLKMLQCKRVVNEVLSTVDFVAP-DDRVVFRTCKREQSRVVFQMGTSDAERA 108
Query: 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176
L A+ VE+DVA ID+NMGCPK++S GGMGAALLS PD IL+TL+ PV+CKI
Sbjct: 109 LAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKI 168
Query: 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
R+ + DT++L KR+E GI A+ VHGR + ERP+H E IR + + L IPVIANGG
Sbjct: 169 RILPSLEDTLSLVKRIERTGIAAVAVHGRKREERPQHPVSCEAIRAIAETLSIPVIANGG 228
Query: 237 S 237
S
Sbjct: 229 S 229
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D G+ + F R Y + PK L C+ ++ P Y+TVQ ++LF S+VTV
Sbjct: 360 DTSGIIKMAVKFDRRAYSPQITPKMCLLEWCRREKLAQPVYDTVQRPLDRLFCSVVTVAE 419
Query: 300 KQYTS 304
++Y S
Sbjct: 420 QKYQS 424
>gi|170572085|ref|XP_001891977.1| dihydrouridine synthase domain containing protein [Brugia malayi]
gi|158603180|gb|EDP39210.1| dihydrouridine synthase domain containing protein [Brugia malayi]
Length = 437
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 144/222 (64%), Gaps = 16/222 (7%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y+NK+ILAPMVR P R LAL YGADLVY+EE+VD KL+ D+L T D+
Sbjct: 7 YANKLILAPMVRAGRTPLRTLALQYGADLVYTEEIVDQKLL-------DILGTTDYT--C 57
Query: 89 DGSVVFRTCPR-EKNKIILQIGT--ADPERALEAAKKV----EHDVAAIDINMGCPKQFS 141
+ VV R C R EK K +LQI + E+ ++ +++ +DVAAIDINMGCPK FS
Sbjct: 58 EDDVVLRICNRVEKQKCVLQIAKMFSCREQMMQNERQMLLENGNDVAAIDINMGCPKPFS 117
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIG 201
+ GGMGAALL P+ A I+ T +S +IP+SCKIRV + DT+ K LE CGI AIG
Sbjct: 118 IAGGMGAALLGNPERAKEIVQTCVSVSTIPISCKIRVLDKQEDTLEFVKMLERCGISAIG 177
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
VHGR ++ER + NR+ IR +T+ + +PVIANG S I Y
Sbjct: 178 VHGRRRSERQSNMNRLNEIREITRVVSVPVIANGFSGSIKKY 219
>gi|395853984|ref|XP_003799478.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
[Otolemur garnettii]
Length = 469
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 131/181 (72%), Gaps = 1/181 (0%)
Query: 57 LVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERA 116
L+ +EL+D K+++ +R +N++L T+DFV P D VVFRTC RE+N+++ Q+GT+D ERA
Sbjct: 14 LIALQELIDLKMLQCKRIINEVLGTVDFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERA 72
Query: 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176
L A+ VE+DVA ID+NMGCPK++S GGMGAALLS PD IL+TL+ PV+CKI
Sbjct: 73 LAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKGTCRPVTCKI 132
Query: 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
R+ + DT+ L KR+E GI AI VHGR + ERP+H ++I+ + L IPVIANGG
Sbjct: 133 RILPSLEDTLNLVKRIERTGIAAIAVHGRKREERPQHPVSCDVIKAIADALSIPVIANGG 192
Query: 237 S 237
S
Sbjct: 193 S 193
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R Y + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 324 DASGVIKMAVRFDRRAYTPQITPKMCLLEWCRKEKLAQPVYETVQRPLDRLFCSVVTVAK 383
Query: 300 KQYTS 304
++Y S
Sbjct: 384 QKYQS 388
>gi|145344190|ref|XP_001416620.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576846|gb|ABO94913.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 345
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 153/242 (63%), Gaps = 9/242 (3%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
MA + A Y+ K + APMVR++TL RLLA +YGADLVY EELVD + + R +N
Sbjct: 1 MAAPDGAREFYTGKNVCAPMVRISTLATRLLAHEYGADLVYGEELVDKRFMHCRRILNKE 60
Query: 79 LNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
L ++DF+D G++ FRT P E+ +++ Q+GT+ AL++A+ V DVAAID+NMGCPK
Sbjct: 61 LGSVDFIDA-KGTLTFRTVPEERERVVFQVGTSSAASALKSAELVARDVAAIDVNMGCPK 119
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACG 196
FS +GGMGA LLS P++ +ILTTL NL + V+CKIR+ +E +T L K +E+CG
Sbjct: 120 HFSTSGGMGARLLSQPELVRDILTTLRRNLPSTTHVTCKIRLLESERETAELAKMIESCG 179
Query: 197 IIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYG------GVFSLN 250
+ A VHGR +RPR +I+ + + + PVIANG + D+ G S
Sbjct: 180 VSAFAVHGRYIPQRPREPAHWNLIKNVVEAVDCPVIANGDVECYEDFARIRAQTGAASAM 239
Query: 251 CA 252
CA
Sbjct: 240 CA 241
>gi|66810311|ref|XP_638879.1| tRNA-dihydrouridine synthase 2-like protein [Dictyostelium
discoideum AX4]
gi|60467531|gb|EAL65553.1| tRNA-dihydrouridine synthase 2-like protein [Dictyostelium
discoideum AX4]
Length = 402
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 149/213 (69%), Gaps = 7/213 (3%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK I+APMVR+ T P R+LA +YG D+ YSEEL+D KL+K+ R VN+ L TIDF+
Sbjct: 28 MDYYNKKIMAPMVRVGTYPMRILAYNYGCDIAYSEELIDLKLMKSTRVVNEKLKTIDFI- 86
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
D ++ +RT ++ + +LQ+GTA ALEAAK V +D+ A+DINMGCPK FS+ GGM
Sbjct: 87 AKDQTLCYRTSEKDV-RNVLQLGTASSMTALEAAKVVCNDICALDINMGCPKFFSVQGGM 145
Query: 147 GAALLSTPDIACNILTTLISNLS-IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
G+ALLS P+ +ILTTL NL+ IP++CKIR+ + +TI L + +E+ G+ AIGVH R
Sbjct: 146 GSALLSKPETIKDILTTLKRNLNGIPITCKIRLLSTDQETIDLLRIIESTGVSAIGVHCR 205
Query: 206 TKAERPR---HRNRIEMIRTLTQHLKIPVIANG 235
ERPR H +R+E I + +P+IANG
Sbjct: 206 MIPERPRDPAHWDRLENILS-NASFSVPIIANG 237
>gi|324504592|gb|ADY41982.1| tRNA-dihydrouridine synthase 2-like protein [Ascaris suum]
Length = 454
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/200 (54%), Positives = 143/200 (71%), Gaps = 3/200 (1%)
Query: 48 LLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC-PREKNKIIL 106
LLAL+YGADLVY+EE+VD +L+ + R VND+L+T+D+V ++ VV R RE+NK +L
Sbjct: 43 LLALEYGADLVYTEEIVDQRLLNSRRIVNDVLHTVDYV--IEEDVVLRVATERERNKCVL 100
Query: 107 QIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS 166
Q+GT + +R AKKV D+AAID+NMGCPK FSLTGGMGAALL+ PD ILT+L+S
Sbjct: 101 QVGTNNGDRIAAVAKKVHDDIAAIDVNMGCPKPFSLTGGMGAALLTQPDKIKEILTSLVS 160
Query: 167 NLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH 226
S+PVSCKIRV DT+AL + +E CG+ A+GVHGR + ER NR+ IR + +
Sbjct: 161 VSSVPVSCKIRVLDKLEDTLALVRLIEKCGVAAVGVHGRRRDERQGDANRVNEIREVVRA 220
Query: 227 LKIPVIANGGSKEIVDYGGV 246
L IPVIANG S + ++ V
Sbjct: 221 LSIPVIANGASGMVKEFKDV 240
>gi|281200935|gb|EFA75149.1| tRNA-dihydrouridine synthase 2-like protein [Polysphondylium
pallidum PN500]
Length = 437
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 147/211 (69%), Gaps = 4/211 (1%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y +K+I+APMVR+ TLP RLLA +YG D+ YSEEL+D K+ +T+R +N L TIDF+
Sbjct: 41 MDYYDKVIMAPMVRVGTLPMRLLAKEYGCDIAYSEELIDLKVSQTKRVINKSLGTIDFI- 99
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
D ++ +RTC E +LQ+GTA AL AA+ V +DV AIDINMGCPK FS+ GGM
Sbjct: 100 AKDNTITYRTCA-EDTLNVLQLGTASATTALAAAQVVVNDVCAIDINMGCPKFFSVQGGM 158
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
G+ALLS PD +ILTTLI NL +PV+CKIR+ ++ TI L + +E G+ AIGVH RT
Sbjct: 159 GSALLSKPDTIKDILTTLIRNLPLPVTCKIRLLEDDNKTIDLMRIIENTGVKAIGVHMRT 218
Query: 207 KAERPRHRNRIEMIRTLTQHLK--IPVIANG 235
ERPR + ++ + + K +P+IANG
Sbjct: 219 IPERPRDPAHWDRLKNILDNAKFSVPIIANG 249
>gi|402908817|ref|XP_003917131.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
3 [Papio anubis]
Length = 458
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 136/217 (62%), Gaps = 36/217 (16%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQM---------------------------------- 88
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ + PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 89 -GGMGAALLSDPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 147
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 148 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 184
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 313 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 372
Query: 300 KQYTS 304
++Y S
Sbjct: 373 QKYQS 377
>gi|397487034|ref|XP_003814619.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
3 [Pan paniscus]
Length = 458
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 135/217 (62%), Gaps = 36/217 (16%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLYYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQM---------------------------------- 88
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 89 -GGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 147
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 148 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 184
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 313 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 372
Query: 300 KQYTS 304
++Y S
Sbjct: 373 QKYQS 377
>gi|363748921|ref|XP_003644678.1| hypothetical protein Ecym_2108 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888311|gb|AET37861.1| Hypothetical protein Ecym_2108 [Eremothecium cymbalariae
DBVPG#7215]
Length = 379
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 141/225 (62%), Gaps = 13/225 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y+ K++LAPMVR LP RLLAL YGADLV+ E++D K+++ ER+VN LNT+DFV
Sbjct: 2 VSYAGKVVLAPMVRAGELPTRLLALKYGADLVWGPEIIDKKVIQCEREVNKDLNTVDFVV 61
Query: 87 PLDGS-----VVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P G+ +VFRT P +E+ K+I Q+GTA P A+EAA KV DV ID+N GCPK F
Sbjct: 62 PSRGTGRPPTIVFRTAPEQEQGKLIFQLGTAAPSLAVEAANKVIQDVDGIDVNAGCPKHF 121
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALCKRLEACG 196
S+ GMGAALL TPD CNIL L+ + P+S KIR+ +E T++L +L A G
Sbjct: 122 SIHAGMGAALLKTPDKLCNILKELVEKVGKPNQKPISVKIRILDDEESTLSLVTKLCATG 181
Query: 197 IIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSK 238
+ + VH RT R R RN + I + Q + I NG K
Sbjct: 182 VSNLTVHCRTTPMRNREHPIRNYVPGIYKICQSSGVSFIMNGSIK 226
>gi|419635906|ref|NP_001258692.1| tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform 2 [Homo
sapiens]
Length = 458
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 135/217 (62%), Gaps = 36/217 (16%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQM---------------------------------- 88
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 89 -GGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 147
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 148 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 184
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 313 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 372
Query: 300 KQYTS 304
++Y S
Sbjct: 373 QKYQS 377
>gi|303286323|ref|XP_003062451.1| dihydrouridine synthase [Micromonas pusilla CCMP1545]
gi|226455968|gb|EEH53270.1| dihydrouridine synthase [Micromonas pusilla CCMP1545]
Length = 346
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 143/214 (66%), Gaps = 7/214 (3%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y+NK ILAPMVR+ T+P RL A +YGAD+VYSEE++D+ L++++R N T++FV+
Sbjct: 8 YTNKNILAPMVRVCTMPTRLQATEYGADIVYSEEILDYSLMRSKRVENHAFGTVEFVNTK 67
Query: 89 DGS-----VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
+ S V+F+T P E+ +++LQ+GT D RAL+ A D++A+DINMGCP +FS +
Sbjct: 68 ENSSGFRDVIFQTIPEERGRLVLQLGTGDATRALKCALLAAKDISAVDINMGCPLKFSTS 127
Query: 144 GGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIG 201
G G+ALL P+ +I+TTL NL + V+CKIR+ TI L + +EACG+ A G
Sbjct: 128 SGAGSALLKKPEQVRDIMTTLRRNLPSEVHVTCKIRLLETTEKTIELARVIEACGVSAFG 187
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VH R ++RPR ++++ + + + PVIANG
Sbjct: 188 VHARYVSQRPRQPAHWDLMKHVVESVSCPVIANG 221
>gi|367009534|ref|XP_003679268.1| hypothetical protein TDEL_0A07250 [Torulaspora delbrueckii]
gi|359746925|emb|CCE90057.1| hypothetical protein TDEL_0A07250 [Torulaspora delbrueckii]
Length = 372
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 147/231 (63%), Gaps = 13/231 (5%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y+ K++LAPMVR LP RLLAL +GADLV+S E++D KL++ ER++N+ L T+DFV P
Sbjct: 4 YAGKLVLAPMVRAGELPTRLLALQHGADLVWSPEIIDKKLIQCERQINETLKTVDFVIPS 63
Query: 89 DG-----SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
G ++VFRT P EK K+I QIGTA P ALEAA KV DV ID+N GCPK FS+
Sbjct: 64 PGGNKPPTLVFRTYPAAEKGKVIFQIGTATPSLALEAALKVIKDVDGIDVNAGCPKHFSV 123
Query: 143 TGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALCKRLEACGII 198
GMGAALL TP+ C+IL L++ + P+S KIR+ +E T+ L +RL + GI
Sbjct: 124 HSGMGAALLQTPEKLCSILKELVTKVGEPYKKPISVKIRLLEDEEKTLKLVERLCSTGIS 183
Query: 199 AIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV 246
+ VH RT R R R+ I I + Q +K+ +I NG ++ + G+
Sbjct: 184 NLTVHCRTTPMRNREAPIRDYIPGIYRICQRMKVSLIMNGAVRDRSHFRGL 234
>gi|50310669|ref|XP_455356.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644492|emb|CAG98064.1| KLLA0F06094p [Kluyveromyces lactis]
Length = 359
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/226 (46%), Positives = 142/226 (62%), Gaps = 13/226 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RLLAL +GADLV+S E++D KL++ +R+VND L T+DF+
Sbjct: 2 VQYAGKLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFII 61
Query: 87 P-----LDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P + VVFRT P E K+I QIGT+ P A+EAA KV DVA ID+N GCPK F
Sbjct: 62 PAKREGTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHF 121
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACG 196
S+ GMGAALL TPD C+IL L+ + P+S KIR+ +E DT+ L ++L A G
Sbjct: 122 SIHSGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATG 181
Query: 197 IIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKE 239
I + VH RT R R R I I + + K+ +I NG ++
Sbjct: 182 ITNLTVHCRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRD 227
>gi|440640433|gb|ELR10352.1| hypothetical protein GMDG_04734 [Geomyces destructans 20631-21]
Length = 443
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 110/246 (44%), Positives = 149/246 (60%), Gaps = 25/246 (10%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD ++ T R N L+T+DF
Sbjct: 22 GVDYRCKLVLAPMVRSGELPSRLLALHYGADLVWGPETVDRSMIGTTRTFNSALSTVDFT 81
Query: 86 DPLDG-----------SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
+ SV+FR P RE K+I Q+GT+DPERA+EAAK V DVA ID+N
Sbjct: 82 RRSNNGSHGPRKNQKESVIFRLHPAREGKKLIFQMGTSDPERAVEAAKLVAADVAGIDVN 141
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD C IL L++N++ I +S KIR+ +T AL
Sbjct: 142 AGCPKPFSTSGGMGAALLRTPDKLCAILEALVTNVASEFEIGISVKIRLLGTGEETEALV 201
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG------GSKEI 240
+RL A GI + +H RT RPR R+++ MI + + + + +ANG ++E+
Sbjct: 202 RRLCATGITGLTIHCRTTPMRPREKAIRDQLTMIADICREMGVACLANGDVTCPEDAQEL 261
Query: 241 VDYGGV 246
V+ GV
Sbjct: 262 VNAFGV 267
>gi|76156838|gb|AAX27956.2| SJCHGC08364 protein [Schistosoma japonicum]
Length = 170
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 11 VKIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK 70
+ + + + ++ Q+ + + + LAPMVR++T P RLL L+YGAD V SEEL+D ++++
Sbjct: 4 IVLLTTMTINHSGQSTFDATGMVFLAPMVRVSTHPMRLLCLEYGADYVISEELIDQRVIR 63
Query: 71 TERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI 130
+ R ND LNT+DF+ P DGSV FRT EKN++I+Q+GT++PE AL+AAK +E+DV AI
Sbjct: 64 SSRIANDELNTVDFILP-DGSVTFRTSAEEKNRVIVQLGTSNPETALKAAKVLENDVMAI 122
Query: 131 DINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178
D+NMGCPK +S+ GGMGAALL+ PD ILTTL +NL IPV+CK+R+
Sbjct: 123 DVNMGCPKAYSVKGGMGAALLTKPDTVKEILTTLTTNLRIPVTCKMRI 170
>gi|403290601|ref|XP_003936400.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Saimiri
boliviensis boliviensis]
Length = 509
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 141/233 (60%), Gaps = 17/233 (7%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQ- 139
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ V D + G P
Sbjct: 64 DFVAP-DDRVVFRTCQREQNRVVFQMGTSDAERALAVARLVLRLSDFPLFVASKGWPGTH 122
Query: 140 -------------FSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186
GGMGAALLS PD + T + PV+ DT+
Sbjct: 123 VYPQCLDPRDLCILRGAGGMGAALLSDPDKIEKVSPTWVKAGQRPVTILCDPLPQLEDTL 182
Query: 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
+L KR+E GI AI VHGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 183 SLVKRIERTGIAAIAVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 235
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R Y + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 364 DTSGVIKMAVKFDRRAYSDQITPKMCLLEWCRREKLPQPMYETVQRPVDRLFSSIVTVAE 423
Query: 300 KQYTS 304
++Y S
Sbjct: 424 QKYQS 428
>gi|358391426|gb|EHK40830.1| hypothetical protein TRIATDRAFT_85321 [Trichoderma atroviride IMI
206040]
Length = 410
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 141/229 (61%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF- 84
++Y KI+LAPMVR LP RLLAL YGADLV+ E VD ++ T R+ N+ T+++
Sbjct: 14 GVDYRGKIVLAPMVRSGELPSRLLALKYGADLVWGPETVDRAIIGTMRRYNEATQTVEWF 73
Query: 85 --------VDPLDG--SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D ++++ T P +EKN++I QIGT+DP+RAL+AA+ V DVA ID+N
Sbjct: 74 RVASHGQKAPPPDAKENIIYATHPEKEKNRLIFQIGTSDPDRALQAARLVAADVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD C IL TL+ N++ I +S KIR+ A+T AL
Sbjct: 134 AGCPKPFSTSGGMGAALLRTPDKLCAILETLVKNITPEFEIGISVKIRILETPAETEALV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + VH RT RPR R ++ M+ + + + NG
Sbjct: 194 RRLVATGITGLTVHCRTTPMRPRERAIRGQLRMVADICHEAGVACLMNG 242
>gi|255725494|ref|XP_002547676.1| hypothetical protein CTRG_01983 [Candida tropicalis MYA-3404]
gi|240135567|gb|EER35121.1| hypothetical protein CTRG_01983 [Candida tropicalis MYA-3404]
Length = 428
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 140/219 (63%), Gaps = 14/219 (6%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV- 85
I Y+NK+ LAPMVR LP RLLAL YGADLV+S ELVD K+++++R VN LNTID++
Sbjct: 6 IEYTNKLCLAPMVRSGELPMRLLALKYGADLVWSPELVDKKVIQSKRIVNQDLNTIDYIS 65
Query: 86 ----DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFS 141
+P +V+ R P E K+I Q+G++DPE A+EAAKKV DV ID+N GCPK FS
Sbjct: 66 ENHQNPDKKTVILRKHPEESGKLICQLGSSDPELAVEAAKKVIDDVDGIDLNCGCPKNFS 125
Query: 142 LTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACGI 197
GMGA LL TP+I C+ILT L+ N+ P+SCKIR+F+N + L +++ GI
Sbjct: 126 THSGMGAELLKTPEILCSILTNLVENVGKPKGKPISCKIRLFNNFDKSKELIEKICQTGI 185
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
+ +H RT P RNR + + L IP+I G
Sbjct: 186 TNLTIHCRT----PIMRNRQDPVWNYLPKL-IPIIEKSG 219
>gi|426242545|ref|XP_004015133.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
2 [Ovis aries]
Length = 458
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 134/217 (61%), Gaps = 36/217 (16%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN+ L+T+
Sbjct: 4 NNLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEALSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE++K++ Q+
Sbjct: 64 DFVAP-DDRVVFRTCEREQSKVVFQM---------------------------------- 88
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 89 -GGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 147
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E I+ + + L IPVIANGGS +
Sbjct: 148 HGRKREERPQHPVSCEAIKAIAETLSIPVIANGGSHD 184
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D G+ + F R Y + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 313 DTSGIIKMAIKFDRRAYSPQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSVVTVAE 372
Query: 300 KQYTS 304
++Y S
Sbjct: 373 RKYQS 377
>gi|302915835|ref|XP_003051728.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732667|gb|EEU46015.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 407
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 140/229 (61%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD+ ++ T R+ N+ TI++
Sbjct: 14 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETVDYSMIGTSRRFNEESKTIEWF 73
Query: 86 ---------DPLDG--SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D S+++R P EK+K+I QIGTADP+RA++AA+ V DVA ID+N
Sbjct: 74 RLSSQGQKEPPADAKESIIYRMLPEIEKDKLIFQIGTADPDRAVQAARLVAADVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD C IL L+ N++ I +S KIR+ A+T AL
Sbjct: 134 AGCPKPFSTSGGMGAALLKTPDKLCAILEALVKNITPEFEIGISVKIRILDTAAETEALV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + VH RT RPR R ++ M+ + + + NG
Sbjct: 194 RRLCATGITGLTVHCRTTPMRPRERAIRGQLRMVAEVCHEYGVACLMNG 242
>gi|322701013|gb|EFY92764.1| tRNA dihydrouridine synthase (Smm1), putative [Metarhizium acridum
CQMa 102]
Length = 413
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 139/229 (60%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D ++ T R+VN TI++
Sbjct: 14 GVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETIDRAMIGTTRRVNQNTRTIEWT 73
Query: 86 ---------DPLDG--SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D S+++R P +E NK+I QIGTADP+RA+EAA+ V DVA ID+N
Sbjct: 74 RMSSQGHKEPPPDAKESIIYRVFPEKEANKLIFQIGTADPDRAVEAARLVAADVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD IL L+ N++ I +S KIR+ A+T AL
Sbjct: 134 AGCPKPFSTSGGMGAALLRTPDKLVAILEALVKNITPEFDIGISVKIRILETPAETEALV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + VH RT RPR R+++ M+ + + I NG
Sbjct: 194 RRLVATGITGLTVHCRTTPMRPRERAIRDQLRMVANICHEAGVACIMNG 242
>gi|330925066|ref|XP_003300902.1| hypothetical protein PTT_12265 [Pyrenophora teres f. teres 0-1]
gi|311324785|gb|EFQ91034.1| hypothetical protein PTT_12265 [Pyrenophora teres f. teres 0-1]
Length = 473
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 143/231 (61%), Gaps = 21/231 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF- 84
++Y K++LAPMVR LP RLLAL YGADLV+ E +D ++ T R++N +T++F
Sbjct: 15 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETIDRAMIGTTRRMNPHTSTLEFS 74
Query: 85 -----------VDPLD-GSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
+DP + SV++R P EK K+I QIGTA+PE A++AAK V DVA ID
Sbjct: 75 RLPTSKIKNPTLDPTNRESVIYRIHPELEKGKLIYQIGTANPELAVQAAKMVAADVAGID 134
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIA 187
+N GCPK FS +GGMGAALL TPD+ CNILT+L+ + P +S KIR+ +T A
Sbjct: 135 VNSGCPKPFSTSGGMGAALLKTPDLLCNILTSLVEEVGKPYEIGISVKIRILDTPEETAA 194
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L KRL GI + VH RT RPR R++++MI + + + + NG
Sbjct: 195 LVKRLVRTGITGLTVHCRTTPMRPRERAIRHQLKMIGEICREAGVACVMNG 245
>gi|194383804|dbj|BAG59260.1| unnamed protein product [Homo sapiens]
Length = 458
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 134/217 (61%), Gaps = 36/217 (16%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQM---------------------------------- 88
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS D IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 89 -GGMGAALLSDSDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 147
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 148 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 184
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 313 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 372
Query: 300 KQYTS 304
++Y S
Sbjct: 373 QKYQS 377
>gi|340519984|gb|EGR50221.1| hypothetical protein TRIREDRAFT_58267 [Trichoderma reesei QM6a]
Length = 415
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 140/229 (61%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RL+AL YGADLV+ E VD ++ T R+ N+ T+++
Sbjct: 15 GVDYRGKVVLAPMVRSGELPSRLVALKYGADLVWGPETVDRAMIGTTRRYNEATQTVEWF 74
Query: 86 ---------DPLDG--SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D ++++ T P +EKNK+I QIGTADP+RALEAA+ V DVA ID+N
Sbjct: 75 RVASHGQKEPPPDAKENIIYATHPEKEKNKLIFQIGTADPDRALEAARLVAADVAGIDVN 134
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD C IL L+ ++ I +S KIR+ A+T AL
Sbjct: 135 AGCPKPFSTSGGMGAALLRTPDKLCAILENLVKHIVPEFEIGISVKIRILETPAETEALV 194
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + VH RT RPR R ++ MI + + + + NG
Sbjct: 195 RRLVATGITGLTVHCRTTPMRPRERAIRGQLRMIADICREAGVACLMNG 243
>gi|451849512|gb|EMD62815.1| hypothetical protein COCSADRAFT_37715 [Cochliobolus sativus ND90Pr]
Length = 440
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 141/231 (61%), Gaps = 21/231 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF- 84
++Y K++LAPMVR LP RLLAL YGADLV+ E +D ++ T R+ N +T++F
Sbjct: 15 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETIDRAIIGTTRRFNPHTSTLEFT 74
Query: 85 -----------VDP-LDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
+DP L SV++R P EK K+I QIGTA+PE A++AAK V DVA ID
Sbjct: 75 RLPTSKIKNPTLDPDLRESVIYRIHPELEKGKLIYQIGTANPELAVQAAKIVAADVAGID 134
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIA 187
+N GCPK FS +GGMGAALL TPD+ C+ILT L+ + P +S KIR+ DT A
Sbjct: 135 VNSGCPKPFSTSGGMGAALLRTPDLLCDILTKLVEEVGKPFEIGISVKIRILDQPEDTAA 194
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L KRL GI + VH RT RPR R++++MI + + + + NG
Sbjct: 195 LVKRLVRTGITGLTVHCRTTPMRPRERAIRDQLKMIGEICREAGVACVMNG 245
>gi|429854567|gb|ELA29571.1| tRNA dihydrouridine synthase [Colletotrichum gloeosporioides Nara
gc5]
Length = 414
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 139/229 (60%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E VD ++ T R+VN + NTID+
Sbjct: 14 GVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETVDKAMIGTTRRVNPVTNTIDWT 73
Query: 86 D-PLDG----------SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P G +++F T P +E K+I QIGTADPE A++A++ V DVA ID+N
Sbjct: 74 KVPSFGQKNPPKTNPEALMFSTLPEKEAGKLIFQIGTADPELAVQASRLVAADVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALC 189
GCPK FS++GGMGAALL TPD C IL L++N+ I +S KIR+ +T AL
Sbjct: 134 AGCPKPFSISGGMGAALLKTPDKLCAILEALVTNIMPEFEIGISVKIRLLSTPEETEALV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + +H RT RPR RN + M+ + + I NG
Sbjct: 194 RRLCATGITGLTIHCRTTPMRPRERAIRNDLRMVAEICHEFGVACIMNG 242
>gi|451992732|gb|EMD85211.1| hypothetical protein COCHEDRAFT_1188692 [Cochliobolus
heterostrophus C5]
Length = 434
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 141/231 (61%), Gaps = 21/231 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF- 84
++Y K++LAPMVR LP RLLAL YGADLV+ E +D ++ T R+ N +T++F
Sbjct: 15 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETIDRAIIGTTRRFNPHTSTLEFT 74
Query: 85 -----------VDP-LDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
+DP L SV++R P EK K+I QIGTA+PE A++AAK V DVA ID
Sbjct: 75 RLPTSKIKNPTLDPDLRESVIYRIHPELEKGKLIYQIGTANPELAVQAAKIVAADVAGID 134
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIA 187
+N GCPK FS +GGMGAALL TPD+ C+ILT L+ + P +S KIR+ DT A
Sbjct: 135 VNSGCPKPFSTSGGMGAALLRTPDLLCDILTRLVEEVGKPFEIGISVKIRILDQPEDTAA 194
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L KRL GI + VH RT RPR R++++MI + + + + NG
Sbjct: 195 LVKRLVRTGITGLTVHCRTTPMRPRERAIRDQLKMIGEICREAGVACVMNG 245
>gi|117558547|gb|AAI27296.1| LOC548984 protein [Xenopus (Silurana) tropicalis]
Length = 451
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 131/174 (75%), Gaps = 1/174 (0%)
Query: 68 LVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDV 127
+++ +R VND+L+T+D+V P + V+F+TC RE++ ++ Q+GTAD ERAL AK +++D+
Sbjct: 1 MLQCKRVVNDVLHTVDYVSPTE-RVIFQTCERERHSVVFQMGTADAERALTVAKLIQNDI 59
Query: 128 AAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA 187
AAIDINMGCPK++S GGMGAALL P+ IL+TL+ +S P++CKIR+ + +TI+
Sbjct: 60 AAIDINMGCPKEYSTKGGMGAALLLCPEKIEMILSTLVKGISKPITCKIRILPSLTETIS 119
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
L K +E G+ AI VHGR+K ERP+H ++I+ ++Q + IPVIANGGS+E +
Sbjct: 120 LVKLIEKTGVAAIAVHGRSKNERPQHPVHCDVIKAISQAVSIPVIANGGSQEFI 173
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 246 VFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQYT 303
+ SL F + +Y + PK +L C+ ++ P Y TVQ +K F+S+V V+ QY
Sbjct: 305 IISLPIRFDKRNYMSQITPKMLLLEWCRKRKLPQPVYHTVQRPVDKFFQSVVKVDEMQYA 364
Query: 304 S 304
S
Sbjct: 365 S 365
>gi|408388305|gb|EKJ67991.1| hypothetical protein FPSE_11802 [Fusarium pseudograminearum CS3096]
Length = 416
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 140/229 (61%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD+ ++ T R+ ++ T+++
Sbjct: 14 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETVDYSMIGTSRRFDEESKTVEWF 73
Query: 86 ---------DPLDG--SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D S+++R P EK+K+I QIGTADP+RA+EAA+ V DVA ID+N
Sbjct: 74 RTSSHGQKDPPPDAKESIIYRLHPELEKDKLIFQIGTADPDRAVEAARLVAADVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD C IL L+ N++ I +S KIR+ A+T AL
Sbjct: 134 AGCPKPFSTSGGMGAALLQTPDKLCAILEALVKNITPEFEIGISVKIRLLDTAAETEALV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + +H RT RPR R ++ MI + + + NG
Sbjct: 194 RRLCATGITGLTIHCRTTPMRPRERAIRGQLRMIAEVCHEFGVACLVNG 242
>gi|154299041|ref|XP_001549941.1| hypothetical protein BC1G_11833 [Botryotinia fuckeliana B05.10]
Length = 434
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 137/229 (59%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD ++ T RKVN LLNTIDF
Sbjct: 22 GVDYRGKVVLAPMVRSGELPSRLLALHYGADLVWGPETVDRSMIGTTRKVNSLLNTIDFT 81
Query: 86 D-PLDG----------SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P G S++FR P E K+I QIGT+DPERA++ A+ V DVA ID+N
Sbjct: 82 RIPSQGHKEKNANLNESLIFRLHPELEGKKLIFQIGTSDPERAVQCARIVAADVAGIDVN 141
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD C IL L+ + I +S KIR+ T AL
Sbjct: 142 AGCPKPFSTSGGMGAALLQTPDKLCAILEALVREIVPEFEIGISVKIRLLETAEKTEALV 201
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
++L A GI + +H RT RPR R +++MI + + + + NG
Sbjct: 202 RKLCATGITGLTIHCRTTPMRPRERAIREQLKMIADICRESGVACLMNG 250
>gi|322707013|gb|EFY98592.1| tRNA dihydrouridine synthase (Smm1), putative [Metarhizium
anisopliae ARSEF 23]
Length = 457
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 138/229 (60%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D ++ T R+ N TI++
Sbjct: 58 GVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETIDRAMIGTTRQFNQDTRTIEWT 117
Query: 86 ---------DPLDG--SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D S+++R P +E NK+I QIGTADP+RA+EAA+ V DVA ID+N
Sbjct: 118 RMSSQGHKEPPPDAKESIIYRVFPEKEANKLIFQIGTADPDRAVEAARLVAADVAGIDVN 177
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD IL L+ N++ I +S KIR+ A+T AL
Sbjct: 178 AGCPKPFSTSGGMGAALLRTPDKLVAILEALVKNITPEFDIGISVKIRILETPAETEALV 237
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + VH RT RPR R+++ M+ + I I NG
Sbjct: 238 RRLVATGITGLTVHCRTTPMRPRERAIRDQLRMVANICHEAGIACIMNG 286
>gi|347840281|emb|CCD54853.1| hypothetical protein [Botryotinia fuckeliana]
Length = 426
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 137/229 (59%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD ++ T RKVN LLNTIDF
Sbjct: 14 GVDYRGKVVLAPMVRSGELPSRLLALHYGADLVWGPETVDRSMIGTTRKVNSLLNTIDFT 73
Query: 86 D-PLDG----------SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P G S++FR P E K+I QIGT+DPERA++ A+ V DVA ID+N
Sbjct: 74 RIPSQGHKEKNANLNESLIFRLHPELEGKKLIFQIGTSDPERAVQCARIVAADVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD C IL L+ + I +S KIR+ T AL
Sbjct: 134 AGCPKPFSTSGGMGAALLQTPDKLCAILEALVREIVPEFEIGISVKIRLLETAEKTEALV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
++L A GI + +H RT RPR R +++MI + + + + NG
Sbjct: 194 RKLCATGITGLTIHCRTTPMRPRERAIREQLKMIADICRESGVACLMNG 242
>gi|46124971|ref|XP_387039.1| hypothetical protein FG06863.1 [Gibberella zeae PH-1]
Length = 416
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 140/229 (61%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD+ ++ T R+ ++ T+++
Sbjct: 14 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETVDYSMIGTSRRFDEESKTLEWF 73
Query: 86 ---------DPLDG--SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D S+++R P EK+K+I QIGTADP+RA+EAA+ V DVA ID+N
Sbjct: 74 RTSSHGQKDPPPDAKESIIYRLHPELEKDKLIFQIGTADPDRAVEAARLVAADVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD C IL L+ N++ I +S KIR+ A+T AL
Sbjct: 134 AGCPKPFSTSGGMGAALLQTPDKLCAILEALVKNITPEFEIGISVKIRLLDTAAETEALV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + +H RT RPR R ++ MI + + + NG
Sbjct: 194 RRLCATGITGLTIHCRTTPMRPRERAIRGQLRMIAEVCHEFGVACLVNG 242
>gi|212546591|ref|XP_002153449.1| tRNA dihydrouridine synthase (Smm1), putative [Talaromyces
marneffei ATCC 18224]
gi|210064969|gb|EEA19064.1| tRNA dihydrouridine synthase (Smm1), putative [Talaromyces
marneffei ATCC 18224]
Length = 446
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/228 (46%), Positives = 138/228 (60%), Gaps = 19/228 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF- 84
++Y KI LAPMVR LP RL+AL YGADLV+ E +D ++ ER+VN NTI+F
Sbjct: 21 GVDYRGKIALAPMVRSGELPSRLIALKYGADLVWGPETIDKAIMGAERRVNPRNNTIEFT 80
Query: 85 ---------VDPLDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
VDP + SV++R P EK K+I QIGTA PE A++AAK V DVA ID+N
Sbjct: 81 RIPSNSSKGVDPKE-SVIYRIDPENEKGKLIFQIGTASPELAVQAAKVVAGDVAGIDVNS 139
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL L+ + P +S KIR+F + +T AL
Sbjct: 140 GCPKPFSTSGGMGAALLRTPDKLVSILEALVREVGTPYKIGISVKIRLFSDPEETKALVT 199
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL A GI + +H RT RPR R ++ MI T+ + + + NG
Sbjct: 200 RLVATGITGLTIHCRTTPMRPRERAIREQLSMIATVCREAGVACVMNG 247
>gi|320582810|gb|EFW97027.1| Dihydrouridine synthase [Ogataea parapolymorpha DL-1]
Length = 367
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 145/232 (62%), Gaps = 15/232 (6%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y K++LAPMVR+ LP RLLAL YGADLV+ E++D +LV+ ER N +LNT+DF+
Sbjct: 2 VDYRAKLVLAPMVRIGELPTRLLALKYGADLVWGPEIIDKRLVRAERVYNPILNTVDFIQ 61
Query: 87 -------PLDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
P +VFRT + E+ K+I Q+GTA PE A++AAK V DV IDIN GCPK
Sbjct: 62 KDGNKKVPGTTDLVFRTYRKLEQGKLIFQLGTASPELAVQAAKIVAADVDGIDINAGCPK 121
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEA 194
FS+ GMGAALL TPD+ C+IL++L+ + P+S KIR+ + T+ L ++L
Sbjct: 122 HFSVHSGMGAALLKTPDVLCSILSSLVEQVGKPFQKPISVKIRLLPEQEQTLDLVRKLVK 181
Query: 195 CGIIAIGVHGRTKAER---PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
GI + VH RT+ R P R+ I+ I+ + + +I NGG K ++
Sbjct: 182 TGIANLTVHCRTREMRNGQPPIRDYIDKIKEICDEADVSLIINGGIKSYQEF 233
>gi|296421665|ref|XP_002840385.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636600|emb|CAZ84576.1| unnamed protein product [Tuber melanosporum]
Length = 386
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 131/219 (59%), Gaps = 13/219 (5%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K +LAPMVR LP RLLAL YGADLV+ E VD ++ +R VN +N IDFV P
Sbjct: 2 SGKCVLAPMVRTGELPTRLLALKYGADLVWGPETVDKGIIGAQRVVNSKINCIDFVKPQT 61
Query: 90 GS-----VVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
G V+FRTCP E K+I Q+GTA PE A+EAAK + DVA ID+N GCPK FS+
Sbjct: 62 GGQYDEKVIFRTCPAIESGKLIFQLGTASPELAVEAAKIIVGDVAGIDVNSGCPKHFSIH 121
Query: 144 GGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACGIIA 199
GMGAALL PD +ILT+L++ + S+P+S KIR+ DTI L +RL GI
Sbjct: 122 SGMGAALLKNPDKLIDILTSLVTEVGVPNSVPISVKIRLLEPHTDTIGLVQRLCTTGISR 181
Query: 200 IGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+ VH RT RPR R + I + I ANG
Sbjct: 182 VTVHCRTIPMRPREPAIRGVLSEIANVCHEAGIECFANG 220
>gi|444314649|ref|XP_004177982.1| hypothetical protein TBLA_0A06710 [Tetrapisispora blattae CBS 6284]
gi|387511021|emb|CCH58463.1| hypothetical protein TBLA_0A06710 [Tetrapisispora blattae CBS 6284]
Length = 344
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 144/223 (64%), Gaps = 13/223 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RLLAL +GADLV+S E+VD KL++ +++ N LNTIDFV
Sbjct: 2 VTYAGKLVLAPMVRAGELPTRLLALKHGADLVWSPEIVDKKLIQCQKETNTKLNTIDFVI 61
Query: 87 PLD-----GSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P +VVFRT P+ EKNK+I Q+GT+DP A+EAAK V ++V IDIN GCPK F
Sbjct: 62 PSSNDKKPSTVVFRTYPKLEKNKLIFQMGTSDPTLAVEAAKIVINEVDGIDINAGCPKHF 121
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACG 196
S+ GMGAALL TP+ C+IL+ L+ + + P+S KIR+ +E TI L +++ G
Sbjct: 122 SIHSGMGAALLKTPEKLCSILSELVEKVGKPYNKPISVKIRILEDEQSTIELVEKICQTG 181
Query: 197 IIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGG 236
I + VH RT R R R+ ++ I + + + +I NG
Sbjct: 182 IANLTVHCRTTPMRNREAPIRDYLQTINKICKKNNVSLIMNGA 224
>gi|156058113|ref|XP_001594980.1| hypothetical protein SS1G_04788 [Sclerotinia sclerotiorum 1980]
gi|154702573|gb|EDO02312.1| hypothetical protein SS1G_04788 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 513
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 136/229 (59%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E VD ++ T RKVN LNTIDF
Sbjct: 101 GVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETVDRSMIGTTRKVNTALNTIDFT 160
Query: 86 D-PLDG----------SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P G S++FR P E K+I QIGT+DPE+A++ A+ V DVA ID+N
Sbjct: 161 RLPSQGHKEKNANLNESLIFRLHPELEGKKLIFQIGTSDPEKAVQCARMVAADVAGIDVN 220
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD C IL L+ + I +S KIR+ T AL
Sbjct: 221 AGCPKPFSTSGGMGAALLQTPDKLCAILEALVKEIVPEFEIGISVKIRLLETPERTEALV 280
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
++L A GI + +H RT RPR R +++MI + + I + NG
Sbjct: 281 RKLCATGITGLTIHCRTTPMRPRERAIRGQLKMIADICRESGIACLMNG 329
>gi|302853480|ref|XP_002958255.1| hypothetical protein VOLCADRAFT_69189 [Volvox carteri f.
nagariensis]
gi|300256443|gb|EFJ40709.1| hypothetical protein VOLCADRAFT_69189 [Volvox carteri f.
nagariensis]
Length = 252
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 132/215 (61%), Gaps = 24/215 (11%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y K+ILAPMVR+ T P RLL YGAD+VYSEELVD +++ + R+VN+ L T+DF+D
Sbjct: 1 MDYDGKLILAPMVRVGTYPMRLLTAGYGADIVYSEELVDKRVIASVRRVNEALGTVDFLD 60
Query: 87 ---PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
G ++FRT E+ +++ Q+GTA+ AL A V DV A+D+NMGCPKQFSL
Sbjct: 61 KGGEQGGRLMFRTSASERPRLVFQLGTAEAVGALRAVSVVAGDVGALDVNMGCPKQFSLQ 120
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
GGMGAALL P++A L + DT+ L +RL ACG+ AI VH
Sbjct: 121 GGMGAALLRKPEVAEVGL------------------DDPRDTVELARRLGACGVSAIAVH 162
Query: 204 GRTKAERPRHRNRIEMIRTLTQHL---KIPVIANG 235
GRT +RPR IR + L ++PVIANG
Sbjct: 163 GRTTQQRPRDPANWAHIRLVVDALESTRVPVIANG 197
>gi|358377725|gb|EHK15408.1| hypothetical protein TRIVIDRAFT_39034 [Trichoderma virens Gv29-8]
Length = 413
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 138/229 (60%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD ++ T R+ N+ T+++
Sbjct: 14 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETVDRAMIGTTRRYNEATQTVEWF 73
Query: 86 ---------DPLDG--SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D ++++ T P +EK K+I QIGT+DP+RALEAA+ V DVA ID+N
Sbjct: 74 RVASHGQKEPPPDAKENIIYATHPEKEKGKLIFQIGTSDPDRALEAARLVAADVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD IL L+ N++ I +S KIR+ A+T AL
Sbjct: 134 AGCPKPFSTSGGMGAALLRTPDKLVAILEKLVQNITPEFEIGISVKIRILETPAETEALV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + VH RT RPR R ++ MI + + + NG
Sbjct: 194 RRLVATGITGLTVHCRTTPMRPRERAIRGQLRMIAEICHEAGVACLMNG 242
>gi|366987281|ref|XP_003673407.1| hypothetical protein NCAS_0A04620 [Naumovozyma castellii CBS 4309]
gi|342299270|emb|CCC67020.1| hypothetical protein NCAS_0A04620 [Naumovozyma castellii CBS 4309]
Length = 380
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 13/222 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RLLA+ +GADLV+S E+VD KL++ ERK ND L T+DF+
Sbjct: 3 LTYAGKLVLAPMVRAGELPSRLLAIKHGADLVWSPEIVDKKLIQCERKWNDHLQTVDFIV 62
Query: 87 PLDG-----SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P +VVFRT P+ E K+I Q+GTA P+ A +AA K+ DV +D+N GCPK F
Sbjct: 63 PSKNNKGIETVVFRTFPQLESGKLIFQLGTASPDLACQAALKIIEDVDGLDVNAGCPKHF 122
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNLSI----PVSCKIRVFHNEADTIALCKRLEACG 196
S+ GMGAALL TPD C+IL +L+ + P+S KIR+ +E T+ L +RL + G
Sbjct: 123 SIHSGMGAALLQTPDKLCDILKSLVEKIGAPFKKPISVKIRILEDEQKTLQLVERLCSTG 182
Query: 197 IIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
I + VH RT R R R+ I I + Q+ + +I NG
Sbjct: 183 ISNLTVHCRTTPMRNREDPIRDYIHGIFKICQNHNVSLIMNG 224
>gi|367001412|ref|XP_003685441.1| hypothetical protein TPHA_0D03720 [Tetrapisispora phaffii CBS 4417]
gi|357523739|emb|CCE63007.1| hypothetical protein TPHA_0D03720 [Tetrapisispora phaffii CBS 4417]
Length = 389
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 143/228 (62%), Gaps = 18/228 (7%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y+ K++LAPMVR LP RLL++ +GADLV+S E++D KL++ +R +ND LNTIDF+
Sbjct: 2 VSYAGKLVLAPMVRAGELPTRLLSIQHGADLVWSPEIIDKKLIQCQRNINDKLNTIDFII 61
Query: 87 PLDGS----------VVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
P + + +VFRT P+ EK K+I Q+GTA P A+EAA KV DV ID+N G
Sbjct: 62 PSNPNAAHNANKPPVLVFRTYPKIEKGKLIFQMGTASPNLAVEAALKVIQDVDGIDVNAG 121
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKR 191
CPK FS+ GMGAALL TP+ C+ILT L++ + + P+S KIR+ NE+ T+ L K
Sbjct: 122 CPKHFSIHSGMGAALLKTPEKLCSILTELVAKVGKPYNKPISVKIRILDNESSTLGLVKS 181
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGG 236
L GI + VH RT R R R+ I I + + +I NG
Sbjct: 182 LCKTGIANLTVHCRTTPMRNREAPIRDYIPEIYKICAFNNVSLIMNGA 229
>gi|328861733|gb|EGG10836.1| hypothetical protein MELLADRAFT_60122 [Melampsora larici-populina
98AG31]
Length = 377
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 147/230 (63%), Gaps = 9/230 (3%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
YS + LAPMVR+ TL RLLAL+YGA LV+ E+VD ++ +ER VN+ TI +
Sbjct: 98 YSTGLYLAPMVRIGTLTTRLLALEYGAALVWGPEIVDKAIIGSERIVNERTGTIQYTKNN 157
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+ +++T PREK+++I QIG+ADPE AL+AA+ V DV+ ID+N GCPK FSL GGMGA
Sbjct: 158 GTTSIWQTHPREKSRLIYQIGSADPELALKAAQTVLQDVSGIDLNCGCPKDFSLKGGMGA 217
Query: 149 ALLSTPDIACNILTTLISNLSI-PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
ALL P+ C IL+ L+ N+ P+S KIR+ ++ DT+ L K++ A GI + VH RT+
Sbjct: 218 ALLKEPEKLCGILSHLVKNIPTHPISAKIRLLPDQEDTLNLVKQISATGISCLTVHCRTQ 277
Query: 208 AER---PRHRNRIEMI-----RTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
R P +R++ I R+ + + +PV+ANG E D + +L
Sbjct: 278 LMRSTEPALLHRLKEIVETVNRSRSSSVPLPVVANGDCFEYKDMEKIKAL 327
>gi|19112231|ref|NP_595439.1| tRNA dihydrouridine synthase Dus2 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74582543|sp|O74731.1|DUS2_SCHPO RecName: Full=tRNA-dihydrouridine(20) synthase [NAD(P)+]; AltName:
Full=tRNA-dihydrouridine synthase 2
gi|3738144|emb|CAA21245.1| tRNA dihydrouridine synthase Dus2 (predicted) [Schizosaccharomyces
pombe]
Length = 479
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 137/219 (62%), Gaps = 10/219 (4%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK---TERKVNDLLNTID 83
+NYSNK+ LAPMVR+ LP RLLAL YGA+LV+ E+VD L+ ER VND +N ID
Sbjct: 4 LNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCID 63
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
FV P V+FR P E N++I Q+G+A PE A+EAAK V +DVA ID+N GCPK FS+
Sbjct: 64 FVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVH 123
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGIIA 199
GMGA LL D +IL L++ + P +SCKIR+ + DT+ L +R+ G+ A
Sbjct: 124 AGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRA 183
Query: 200 IGVHGRTKAER---PRHRNRIEMIRTLTQHLKIPVIANG 235
I VH RT R P R+ + I + ++ + ++ NG
Sbjct: 184 ITVHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNG 222
>gi|430812204|emb|CCJ30357.1| unnamed protein product [Pneumocystis jirovecii]
Length = 325
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 140/219 (63%), Gaps = 10/219 (4%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE---RKVNDLLNTID 83
++Y KI+LAPMVR+ LP RLLAL YGADLV+ E+VD L+ E R +ND +N ID
Sbjct: 6 VDYHGKIVLAPMVRIGELPTRLLALKYGADLVWGPEVVDKALIHGEICKRVINDKINCID 65
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
FV P +V++R P EK++++ Q+G++DPE A+ AA+ + DVAAID+N GCPK FS+
Sbjct: 66 FVKPKSNTVLYRIHPIEKSRLVFQLGSSDPELAVRAARVIAGDVAAIDLNCGCPKHFSVH 125
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGIIA 199
GMGAALL D IL L+ N+ IP +S KIR+ N +T + +RL GII
Sbjct: 126 SGMGAALLKNVDRLEGILVALVQNIGIPFNIGISAKIRILENIEETETMVRRLCKTGIIG 185
Query: 200 IGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+ VH RT + R + R++++MI + + + IANG
Sbjct: 186 LTVHCRTVSMRNKEKAIRDQLKMISKVCREKGVACIANG 224
>gi|255710875|ref|XP_002551721.1| KLTH0A06028p [Lachancea thermotolerans]
gi|238933098|emb|CAR21279.1| KLTH0A06028p [Lachancea thermotolerans CBS 6340]
Length = 397
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 138/223 (61%), Gaps = 13/223 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RLLAL YGADLV+S E++D KL++ +R+VND L TIDFV
Sbjct: 2 VTYTGKLVLAPMVRAGELPTRLLALKYGADLVWSPEIIDKKLIQCKRQVNDKLKTIDFVA 61
Query: 87 PLDGS-----VVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P VVFRT P E+ ++I Q+GT+ P A+EAA V DV ID+N GCPK F
Sbjct: 62 PSSNDNKPPCVVFRTFPDAERGRLIFQMGTSTPSLAVEAAMVVIKDVDGIDVNAGCPKHF 121
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALCKRLEACG 196
S+ GMGAALL TP+ C+IL++L+ + P+S KIR+ +E T+ L K+L G
Sbjct: 122 SIHSGMGAALLKTPETLCSILSSLVEKVGRPHEKPISVKIRILDSEELTLNLVKKLCGTG 181
Query: 197 IIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGG 236
I + VH RT R R RN + I + Q + +I NG
Sbjct: 182 ISNLTVHCRTTPMRNRQAPIRNYVPSIYKICQANNVSLIMNGA 224
>gi|358057541|dbj|GAA96539.1| hypothetical protein E5Q_03207 [Mixia osmundae IAM 14324]
Length = 446
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 142/225 (63%), Gaps = 13/225 (5%)
Query: 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNT 81
++ A +NY N + LAPMVR TLP RLLAL YGA+LV+ E++D ++ + R L +
Sbjct: 57 SDSARVNYRNGLHLAPMVRCGTLPTRLLALHYGANLVWGPEIIDRAMMGSTRTEVPLPES 116
Query: 82 --------IDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
I F+ +G VF T EK+++I QIG+++ ++A++AA V+ DVA ID+N
Sbjct: 117 ARAHGGKLIKFMK--NGRSVFETHSIEKSRLIYQIGSSNAQQAVQAALLVQQDVAGIDLN 174
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLE 193
GCPK FS GGMGAALLSTPD+ C+IL L+ + +PVSCKIR+ + DT+AL +++
Sbjct: 175 CGCPKDFSTKGGMGAALLSTPDLLCSILEALVEAVDVPVSCKIRLLPTQEDTLALVEKIS 234
Query: 194 ACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
GI + VH RTK R R +R+ I L + IPVIANG
Sbjct: 235 RTGIACLTVHCRTKDMRDREHALHDRLRDIVELVEARGIPVIANG 279
>gi|50290121|ref|XP_447492.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526802|emb|CAG60429.1| unnamed protein product [Candida glabrata]
Length = 371
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 145/230 (63%), Gaps = 9/230 (3%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y+ K++LAPMVR LP RL+AL YGA LV+S E++D KL++T+R N L+++D+V P
Sbjct: 4 YAGKLVLAPMVRAGELPTRLMALKYGAGLVWSPEIIDKKLIQTQRVENSSLSSVDYVMP- 62
Query: 89 DGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
G +VFRT P E+ K+I QIG+ADP A EAA KV DV ID+N GCPK FS+ GMG
Sbjct: 63 SGVLVFRTVPSLERGKLIFQIGSADPALAKEAALKVIQDVDGIDLNCGCPKHFSIHAGMG 122
Query: 148 AALLSTPDIACNILTTLISNLSI----PVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
+ALL P+ C+IL L+ ++ P+SCKIR+ +EA T+ L K + GI + VH
Sbjct: 123 SALLKKPEKLCSILKELVEHVGTPHGKPISCKIRLLEDEASTLELVKMICDTGIRNLTVH 182
Query: 204 GRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
RT R R R+ I+ I ++ + + ++ NG + ++ +FS N
Sbjct: 183 CRTTPMRNRETPIRDYIDSIFSVCKKAGVSLLINGAIRHREEFEQLFSYN 232
>gi|380486108|emb|CCF38921.1| dihydrouridine synthase [Colletotrichum higginsianum]
Length = 424
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 143/248 (57%), Gaps = 19/248 (7%)
Query: 7 RLLLVKIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH 66
R LL + L + ++Y KI+LAPMVR LP RLLAL YGADLV+ E VD
Sbjct: 4 RTLLKTMGSELKKVPIPRRGVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETVDK 63
Query: 67 KLVKTERKVNDLLNTIDFVD-PLDG----------SVVFRTCP-REKNKIILQIGTADPE 114
++ T R+VN + TID+ P G ++VF T P +E K+I QIGTADP+
Sbjct: 64 AMIGTTRRVNPVTKTIDWTKIPSFGQKNPPKTIPEAMVFSTHPEKEAGKLIFQIGTADPD 123
Query: 115 RALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SI 170
A++AA+ V DVA ID+N GCPK FS++GGMGAALL TPD C IL L++N+ I
Sbjct: 124 LAVQAARLVAADVAGIDVNAGCPKPFSISGGMGAALLKTPDKLCAILEALVTNIMPEYEI 183
Query: 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHL 227
+S KIR+ T AL ++L A GI + +H RT RPR R ++ M+ +
Sbjct: 184 GISVKIRLLDTPEQTEALVRKLCATGITGLTIHCRTTPMRPRERAIREQLRMVAEVCHEA 243
Query: 228 KIPVIANG 235
+ I NG
Sbjct: 244 GVACIMNG 251
>gi|449299384|gb|EMC95398.1| hypothetical protein BAUCODRAFT_35385 [Baudoinia compniacensis UAMH
10762]
Length = 434
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 137/231 (59%), Gaps = 21/231 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR P RLLAL+YGADLV+ E +D L+ T R +N NT+DF
Sbjct: 15 GVDYRGKVVLAPMVRSGECPSRLLALEYGADLVWGPETIDKALIGTTRNINTATNTVDFT 74
Query: 86 --------DPL-----DGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAID 131
+P SV++R P RE ++I QIGT++PE A+EAAK + DVA ID
Sbjct: 75 RLSSNGAKNPALNPDRRESVIYRLHPGRESRRLIYQIGTSNPETAVEAAKVIAPDVAGID 134
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIA 187
+N GCPK FS TGGMGAALL TPD C+IL L+ + P +S KIR+ DT A
Sbjct: 135 VNAGCPKPFSTTGGMGAALLKTPDRLCSILRALVKEVGEPNEIGISVKIRILEKPEDTEA 194
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L ++L GI + VH RT RPR R++++MI + + + + NG
Sbjct: 195 LVRKLCKTGITGLTVHCRTTPMRPRERAIRDQLKMIANVCREAGVACVMNG 245
>gi|156844300|ref|XP_001645213.1| hypothetical protein Kpol_1060p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156115872|gb|EDO17355.1| hypothetical protein Kpol_1060p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 383
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/228 (44%), Positives = 145/228 (63%), Gaps = 13/228 (5%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y+ K++LAPMVR LP RLLAL +GADL+++ E++D KL++ R+ N L+T+DF+ P
Sbjct: 4 YAGKLVLAPMVRAGELPTRLLALQHGADLLWTPEIIDKKLIQCTREENKNLDTVDFIIPS 63
Query: 89 D-----GSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
++VFRT P+ E+ K+I Q+GT+ P A+EAA K+ +DV IDIN GCPK FS+
Sbjct: 64 KTDNKPSTLVFRTFPKNEQGKLIFQMGTSSPTLAVEAALKIVNDVDGIDINAGCPKHFSI 123
Query: 143 TGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACGII 198
GMGAALL TPDI C+IL L+S + + P+S KIR+ ++ T+AL +RL GI
Sbjct: 124 HSGMGAALLKTPDILCSILENLVSKVGKPYNKPISVKIRILDDKETTVALVERLCTTGIS 183
Query: 199 AIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+ VH RT R R R+ I I+ + + + +I NG K V +
Sbjct: 184 NLTVHCRTTPMRNREAPIRDYIPSIKEICEKNNVSLIMNGAIKNKVHF 231
>gi|310790767|gb|EFQ26300.1| dihydrouridine synthase [Glomerella graminicola M1.001]
Length = 427
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 137/229 (59%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E VD ++ T R+VN + TID+
Sbjct: 23 GVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETVDKAMLGTTRRVNPVTKTIDWT 82
Query: 86 D-PLDG----------SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P G ++VF T P +E K+I QIGTADP+ A++AA+ V DVA ID+N
Sbjct: 83 KIPSFGQKNPPKTIPEALVFSTHPEKEAGKLIFQIGTADPDLAVQAARLVAGDVAGIDVN 142
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALC 189
GCPK FS++GGMGAALL TPD C IL L++N+ I +S KIR+ T AL
Sbjct: 143 AGCPKPFSISGGMGAALLKTPDKLCAILEALVANIMPEFEIGISVKIRLLDTPEQTEALV 202
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
++L A GI + +H RT RPR R ++ M+ + + I NG
Sbjct: 203 RKLCATGITGLTIHCRTTPMRPRERAIREQLRMVAEVCHEAGVACIMNG 251
>gi|396473302|ref|XP_003839311.1| hypothetical protein LEMA_P029840.1 [Leptosphaeria maculans JN3]
gi|312215880|emb|CBX95832.1| hypothetical protein LEMA_P029840.1 [Leptosphaeria maculans JN3]
Length = 448
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 140/229 (61%), Gaps = 21/229 (9%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF--- 84
+Y K++LAPMVR LP RLLAL YGADLV+ E +D ++ T R++N +T+++
Sbjct: 17 DYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETIDRAIIGTTRRLNPHTSTLEWSRL 76
Query: 85 ---------VDP-LDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
+DP L SV++R P EK K+I Q+GTA+PE A++AAK V DVA ID+N
Sbjct: 77 PTSKLKNPTLDPELRESVIYRIHPELEKGKLIYQMGTANPELAVQAAKMVAADVAGIDVN 136
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALC 189
GCPK FS GGMGAALL TPD+ C+ILT L+ + P +S KIR+ +T AL
Sbjct: 137 SGCPKPFSTAGGMGAALLKTPDLLCSILTRLVEEVGKPFEIGISVKIRILELPEETEALV 196
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
KRL GI + VH RT RPR R++++M+ + + + + NG
Sbjct: 197 KRLVRTGITGLTVHCRTTPMRPRERAIRDQLKMVGEICREAGVACVMNG 245
>gi|294655111|ref|XP_457209.2| DEHA2B05720p [Debaryomyces hansenii CBS767]
gi|199429699|emb|CAG85204.2| DEHA2B05720p [Debaryomyces hansenii CBS767]
Length = 446
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 139/218 (63%), Gaps = 12/218 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ YS K+ LAPMVR +P RL+AL YGADLV++ E+VD KL+K ER +ND L T+DF+D
Sbjct: 74 VEYSGKLALAPMVRSGEIPTRLMALRYGADLVWTPEIVDKKLIKCERVINDDLGTVDFLD 133
Query: 87 PLDGSVVFRTCPREKN-KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
P + VVFRT P E++ K+I QIG+ADPE A++AAK V DV ID+N GCPK FS G
Sbjct: 134 P-NKKVVFRTYPAEESGKLIFQIGSADPELAVQAAKIVAQDVDGIDLNCGCPKPFSTHSG 192
Query: 146 MGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNE--ADTIALCKRLEACGIIA 199
MGAALL+TPD+ +IL L+S + IP+S KIR+ + ++ L RL GI
Sbjct: 193 MGAALLTTPDLLESILRNLVSEVGKVYDIPISAKIRLLDDTDVTPSLELIDRLCKTGISN 252
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237
+ +H RT PR RNR +R + V AN S
Sbjct: 253 LTLHCRT----PRMRNRDTPVRDFLPSIIDTVHANNVS 286
>gi|121705192|ref|XP_001270859.1| tRNA dihydrouridine synthase (Smm1), putative [Aspergillus clavatus
NRRL 1]
gi|119399005|gb|EAW09433.1| tRNA dihydrouridine synthase (Smm1), putative [Aspergillus clavatus
NRRL 1]
Length = 444
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D L+ R+VN TI++
Sbjct: 16 GVDYRGKIVLAPMVRSGELPSRLLALKYGADLVWGPETIDRSLIGATRRVNPRNGTIEYT 75
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P S+++R P REK +++ QIGTA PE A+EAAK V DVA ID+N
Sbjct: 76 RLPSNGGRSDKPPQESILYRIDPVREKGRLVFQIGTASPELAVEAAKLVAGDVAGIDVNS 135
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL +L+ + P +S KIR+ T AL +
Sbjct: 136 GCPKPFSTSGGMGAALLRTPDKLVSILESLVREVGNPFQIGISVKIRILETPEKTEALVR 195
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL A GI + VH RT RPR R+++ M+ ++ + + + NG
Sbjct: 196 RLVATGITGLTVHCRTTPMRPRERAIRDQLRMVASICRDAGVACVMNG 243
>gi|407921442|gb|EKG14589.1| tRNA-dihydrouridine synthase [Macrophomina phaseolina MS6]
Length = 427
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 137/239 (57%), Gaps = 24/239 (10%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF- 84
++Y NKI+LAPMVR LP RLLAL YGADLV+ E +D L+ T R N TI++
Sbjct: 14 GVDYRNKIVLAPMVRSGELPSRLLALHYGADLVWGPETIDKALIGTRRIENPATKTIEYR 73
Query: 85 -----------VDPLD-GSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAID 131
DP SV++R P REK K+I Q+GT +PE A++AA V DVA ID
Sbjct: 74 RFANNGQKNHVPDPDQRESVIYRIDPEREKGKLIFQLGTPNPESAVQAASLVAADVAGID 133
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIA 187
+N GCPK FS +GGMGAALL PD C+IL L+ + I +S KIR+ N DT A
Sbjct: 134 VNSGCPKPFSTSGGMGAALLKDPDRLCSILEALVKEVGQKFEIGISVKIRILQNPEDTKA 193
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
L RL GI + VH RT RPR R+++ MIR + + + NG ++ DY
Sbjct: 194 LVSRLVRTGITGLTVHCRTTPMRPRERAIRDQMSMIREICHEAGVACLING---DVEDY 249
>gi|346979230|gb|EGY22682.1| tRNA-dihydrouridine synthase [Verticillium dahliae VdLs.17]
Length = 423
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 135/229 (58%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD ++ T RKVN + NTID+
Sbjct: 23 GVDYRGKVVLAPMVRSGELPSRLLALHYGADLVWGPETVDKAIIGTTRKVNPVTNTIDWT 82
Query: 86 ---------DPLDG--SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D +VVF T P +E ++I Q+GTADP+ A++AA+ V DVA ID+N
Sbjct: 83 RIPSFGQKEPPPDAKEAVVFSTHPAKEAGRLIFQVGTADPDLAVQAARLVAGDVAGIDVN 142
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALC 189
GCPK FS GMGA LL TPD C IL L++ + I VS KIR+ +T AL
Sbjct: 143 AGCPKPFSTHSGMGAQLLRTPDKLCAILEALVATVVPEFEIGVSVKIRLLATPPETEALV 202
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + VH RT RPR R ++ M+ + + + + NG
Sbjct: 203 RRLVATGITGLTVHCRTTPMRPREPAIRGQLRMVADICREAGVACLMNG 251
>gi|402072617|gb|EJT68358.1| tRNA dihydrouridine synthase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 448
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 138/229 (60%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF- 84
++Y K++LAPMVR LP RLLAL YGADLV+ E VD+ ++ T R+VN NTI++
Sbjct: 31 GVDYRGKVVLAPMVRSGELPTRLLALHYGADLVWGPETVDYSMLGTTRRVNPATNTIEWT 90
Query: 85 --------VDPLDG--SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
+ P + S++F+ P E ++I Q+G+ DP RA+EAA+ V DVA ID+N
Sbjct: 91 RVPSFGQKIPPAEAKESIIFKLHPELEGRRLIFQLGSGDPARAVEAARLVAGDVAGIDLN 150
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS TGGMGAALL PD C IL L+ +++ I +S KIR+ A+T AL
Sbjct: 151 AGCPKPFSTTGGMGAALLRDPDRLCAILKALVRDVAPAAQIGISVKIRLLETPAETEALV 210
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + VH RT RPR R ++ M+ + + + + NG
Sbjct: 211 RRLVATGITGLTVHCRTTPMRPREPAIRGQLRMVADVCRAAGVACLMNG 259
>gi|405120799|gb|AFR95569.1| tRNA-dihydrouridine synthase 2-like protein [Cryptococcus
neoformans var. grubii H99]
Length = 477
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 145/246 (58%), Gaps = 12/246 (4%)
Query: 1 MVREGTRLLLVKIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYS 60
++ E RL I YV N INY NK++LAPMVR +LP RLL+L YGA LV+S
Sbjct: 59 LIEEQMRL---PIEYVRSYDN----EINYKNKLVLAPMVRTGSLPMRLLSLYYGAGLVWS 111
Query: 61 EELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAA 120
E+VD ++ ER V+ + I + +F T P EK +I QIG+++PE A++AA
Sbjct: 112 PEVVDKAIIGAERSVDPVTGVITYHK--GQGPIFSTHPAEKPFLIFQIGSSNPELAVKAA 169
Query: 121 KKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180
+ V+ DVA ID+N GCPK FS GMGAALLSTP+I +IL L+ ++ +P+SCKIR+
Sbjct: 170 QTVQQDVAGIDLNCGCPKPFSTHAGMGAALLSTPEILLDILRALLDSIPLPISCKIRLLP 229
Query: 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHR---NRIEMIRTLTQHLKIPVIANGGS 237
+ T+ L R+ G+ + VH RT+ RP R R+ I L + I VI NG
Sbjct: 230 TQPSTLYLASRILRTGVRNLTVHCRTRQMRPGERALWERLGSIVDLGKRRGISVICNGDG 289
Query: 238 KEIVDY 243
+ ++
Sbjct: 290 EGWSNW 295
>gi|406606724|emb|CCH41948.1| tRNA-dihydrouridine synthase [Wickerhamomyces ciferrii]
Length = 410
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 143/224 (63%), Gaps = 14/224 (6%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y K++LAPMVR LP RLLAL YGADLV+ E++D K++ +R +N+ L TID++
Sbjct: 2 VDYRGKLVLAPMVRAGELPTRLLALKYGADLVWGPEIIDKKILTCDRIINEKLGTIDYLS 61
Query: 87 ------PLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQ 139
P ++VFRT P +E +K+I Q+GT++P+ A++AA+K+ +DV IDIN GCPK
Sbjct: 62 KGQTKIPGVTNLVFRTFPPKENSKLIFQMGTSNPDLAVQAAEKIINDVNGIDINAGCPKH 121
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEAC 195
FS+ GMGAALL TPD+ +IL L+ + S P+S KIR+F E D++ L +L
Sbjct: 122 FSIHAGMGAALLKTPDLLVSILKNLVEKIGKPNSKPISVKIRLFPQEEDSLTLISKLLKT 181
Query: 196 GIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGG 236
GI + VH RT+ R R R+ I+ I+ L + +I NG
Sbjct: 182 GISNLTVHCRTQPMRNREPPIRSYIDKIKKLCDDHNVTLIINGA 225
>gi|344302497|gb|EGW32771.1| hypothetical protein SPAPADRAFT_60124 [Spathaspora passalidarum
NRRL Y-27907]
Length = 394
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 139/220 (63%), Gaps = 9/220 (4%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+NY++KI LAPMVR LP RL++L YG DLV++ E+VD KL+ R VN L TID+++
Sbjct: 2 LNYASKICLAPMVRSGELPIRLVSLKYGCDLVWTPEIVDKKLITCVRTVNPSLGTIDYIE 61
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+ S+ FR P E K++LQ+G+++ + A+EA KV +DV ID+N GCPK FS+ GM
Sbjct: 62 SKNQSLTFRKHPLEDGKLVLQLGSSNADLAVEAGLKVINDVDGIDLNCGCPKHFSIHSGM 121
Query: 147 GAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GAALL TPD+ C ILT L+ + + P+SCKIR+ +T L +R+ A GI + +
Sbjct: 122 GAALLRTPDVLCEILTALVEKVGRPNNKPISCKIRLLPEFEETKTLVERICATGISNLTI 181
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
H RT P RNR + I L IP+I + G I++
Sbjct: 182 HCRT----PIMRNRQDPIWNYLPKL-IPIIQDSGVNVIIN 216
>gi|241952298|ref|XP_002418871.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
gi|223642210|emb|CAX44177.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
Length = 451
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 142/233 (60%), Gaps = 15/233 (6%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV- 85
I Y+NK+ LAPMVR LP RLL+L YG DL+++ ELVD K++++ R +N LNTID++
Sbjct: 2 IEYANKVCLAPMVRSGELPIRLLSLKYGCDLLWTPELVDKKILQSTRIINQELNTIDYIV 61
Query: 86 ----DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFS 141
+V+FR P E K+ILQ+G++DP+ A+EAA KV DV ID+N GCPK FS
Sbjct: 62 SNHQQSDKKTVIFRKHPDETGKLILQLGSSDPQLAVEAANKVIDDVDGIDLNCGCPKNFS 121
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGI 197
GMGA LL TPD C IL L+ + IP +SCKIR+F+N + L +++ GI
Sbjct: 122 THSGMGAELLKTPDKLCCILINLVEKIGIPKKKSISCKIRLFNNYYQSKNLIEKILQTGI 181
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
+ +H RT P RNR + I L IP+I N I++ G + ++N
Sbjct: 182 SNLTIHCRT----PIMRNRQDPIWNFLPKL-IPIIENSQVNLIIN-GNMQNVN 228
>gi|159127783|gb|EDP52898.1| tRNA dihydrouridine synthase (Smm1), putative [Aspergillus
fumigatus A1163]
Length = 443
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD L+ R+VN I+++
Sbjct: 15 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETVDRSLIGATRRVNPRNGCIEYI 74
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P S+++R P REK K++ QIG+A+PE A+EAAK V DVA ID+N
Sbjct: 75 RFPSNGGRPDKPAQESILYRIDPVREKGKLVFQIGSANPELAVEAAKLVAGDVAGIDLNS 134
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL +L+ + P +S KIR+ T +L K
Sbjct: 135 GCPKPFSTSGGMGAALLRTPDKLVSILESLVREVGNPYQIGISVKIRILETPEKTESLVK 194
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL A GI + VH RT RPR R+++ MI + + + + NG
Sbjct: 195 RLVATGITGLTVHCRTTPMRPRERAIRDQLTMIARICREAGVACVMNG 242
>gi|71000116|ref|XP_754775.1| tRNA dihydrouridine synthase (Smm1) [Aspergillus fumigatus Af293]
gi|66852412|gb|EAL92737.1| tRNA dihydrouridine synthase (Smm1), putative [Aspergillus
fumigatus Af293]
Length = 443
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD L+ R+VN I+++
Sbjct: 15 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETVDRSLIGATRRVNPRNGCIEYI 74
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P S+++R P REK K++ QIG+A+PE A+EAAK V DVA ID+N
Sbjct: 75 RFPSNGGRPDKPAQESILYRIDPVREKGKLVFQIGSANPELAVEAAKLVAGDVAGIDLNS 134
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL +L+ + P +S KIR+ T +L K
Sbjct: 135 GCPKPFSTSGGMGAALLRTPDKLVSILESLVREVGNPYQIGISVKIRILETPEKTESLVK 194
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL A GI + VH RT RPR R+++ MI + + + + NG
Sbjct: 195 RLVATGITGLTVHCRTTPMRPRERAIRDQLAMIARICREAGVACVMNG 242
>gi|290985846|ref|XP_002675636.1| dihydrouridine synthase, DuS [Naegleria gruberi]
gi|284089233|gb|EFC42892.1| dihydrouridine synthase, DuS [Naegleria gruberi]
Length = 388
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 144/225 (64%), Gaps = 17/225 (7%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
I+Y+NK+ILAPMVR+N LPFR LA +GAD+VYSEELVD KL+K + N+ L TID++
Sbjct: 30 IDYTNKVILAPMVRVNGLPFRRLAARFGADIVYSEELVDKKLIKCKPVYNEKLKTIDYIG 89
Query: 87 PLDGSVVFRT--------CPREKNKI--ILQIGTADPERALEAAKKVEHDVAAIDINMGC 136
DG++V++ P K+ +LQ+GT+ PE AL+ A+ + AID+NMGC
Sbjct: 90 -HDGNIVYQVEVVDKESDSPTASQKVPTVLQLGTSSPELALQVAELMIDGYDAIDVNMGC 148
Query: 137 PKQFSLTGGMGAALL--STPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALCK 190
PK+FS+ GGMG+ALL + A IL L+ + PV+CKIR+ +TI L +
Sbjct: 149 PKKFSVKGGMGSALLRPENQENAFAILRALVKGIQEKHGKPVTCKIRLLDTTENTIELYE 208
Query: 191 RLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+L+A G+ AI VH R +RPR + ++ +++ K+P+IANG
Sbjct: 209 KLQATGVTAICVHARYIPQRPREKAHSHLVDPVSKITKVPIIANG 253
>gi|346324449|gb|EGX94046.1| tRNA dihydrouridine synthase [Cordyceps militaris CM01]
Length = 420
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 135/229 (58%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E +D ++ T RKVN+ I++
Sbjct: 14 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETIDRAIIGTTRKVNEQTGCIEWC 73
Query: 86 ---------DPLDG--SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D SV++ T P +E ++I Q+GTADP+ A+EAA+ + DVA ID+N
Sbjct: 74 RTQSHGLKEPPPDAKMSVIYVTEPEKEAKRLIFQMGTADPDLAVEAARLIAGDVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD IL L+ N++ I +S KIR+ A+T L
Sbjct: 134 AGCPKPFSTSGGMGAALLRTPDKLVAILEALVKNITPHYDIGISVKIRILETAAETETLV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + VH RT RPR R ++ M+ L + + NG
Sbjct: 194 RRLVATGITGLTVHCRTTPMRPRERAIRGQLRMVADLCHEAGVACLMNG 242
>gi|238883846|gb|EEQ47484.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 433
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 136/219 (62%), Gaps = 14/219 (6%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV- 85
I Y+NK+ LAPMVR LP RLL+L YG DL+++ ELVD K++++ R +N LNTID++
Sbjct: 2 IEYANKLCLAPMVRSGELPIRLLSLRYGCDLLWTPELVDKKILQSTRIINQELNTIDYIV 61
Query: 86 ----DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFS 141
+V+FR P E ++ILQ+G++DP+ A++AA+KV DV ID+N GCPK FS
Sbjct: 62 SNHQQSDKKTVIFRKHPDETGRLILQLGSSDPQLAVDAARKVIDDVDGIDLNCGCPKNFS 121
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGI 197
GMGA LL TPD C+IL L+ + IP +SCKIR+F+N + L +++ GI
Sbjct: 122 THSGMGAELLKTPDKLCSILINLVEKIGIPNKKSISCKIRLFNNYDQSKNLIEKILQTGI 181
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
+ +H RT P RNR + + L IP+I G
Sbjct: 182 SNLTIHCRT----PIMRNRQDPVWNFLPKL-IPIIQTAG 215
>gi|403157793|ref|XP_003307191.2| tRNA-dihydrouridine synthase 2, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375163554|gb|EFP74185.2| tRNA-dihydrouridine synthase 2, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 423
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 137/216 (63%), Gaps = 9/216 (4%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y+ + LAPMVR+ TLP RLLAL+YGADLV+ E+VD ++ + R V++ TI +
Sbjct: 71 YTPGVYLAPMVRIGTLPTRLLALEYGADLVWGPEIVDKAIIGSTRVVDESSGTIQYTKNN 130
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
S +++T P EK+++I QIG+A+ E AL+AA+ V +DV+ ID+N GCPK FSL GGMGA
Sbjct: 131 GTSSIWQTHPIEKSRLIYQIGSANKELALQAAQTVANDVSGIDLNCGCPKDFSLKGGMGA 190
Query: 149 ALLSTPDIACNILTTLISNLSI-PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
ALL PD C ILT L+ NL P+S KIR+ ++ DT++L K++ G+ + VH RT+
Sbjct: 191 ALLKEPDKLCGILTHLVQNLPTHPISVKIRLLPSQEDTLSLVKKICDTGVSCLTVHCRTQ 250
Query: 208 AERPRHRNRIEMIRTL--------TQHLKIPVIANG 235
R + +R + T +PV+ANG
Sbjct: 251 PMRSTEPALLHRLREIVDFVNGIRTSENPLPVVANG 286
>gi|119492469|ref|XP_001263600.1| tRNA dihydrouridine synthase (Smm1), putative [Neosartorya fischeri
NRRL 181]
gi|119411760|gb|EAW21703.1| tRNA dihydrouridine synthase (Smm1), putative [Neosartorya fischeri
NRRL 181]
Length = 443
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 135/228 (59%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E +D L+ R+VN I+++
Sbjct: 15 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETIDRSLIGATRRVNPRNGCIEYI 74
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P S+++R P REK K++ QIG+A+PE A+EAAK V DVA ID+N
Sbjct: 75 RFPSNGGRPDKPAQESILYRIDPVREKGKLVFQIGSANPELAVEAAKLVAGDVAGIDLNS 134
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL +L+ + P +S KIR+ T +L K
Sbjct: 135 GCPKPFSTSGGMGAALLRTPDKLVSILESLVREVGNPYQIGISVKIRILETPEKTESLVK 194
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL A GI + VH RT RPR R+++ MI + + + + NG
Sbjct: 195 RLVATGITGLTVHCRTTPMRPRERAIRDQLAMIARICREAGVACVMNG 242
>gi|385303832|gb|EIF47883.1| trna-dihydrouridine synthase 2 [Dekkera bruxellensis AWRI1499]
Length = 313
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 138/231 (59%), Gaps = 15/231 (6%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD- 86
+Y+ K LAPMVR+ LP RLLAL YGADLV+ E+VD K++ + N L+T+DF+
Sbjct: 3 DYTAKFALAPMVRIGELPIRLLALKYGADLVWGPEIVDRKILTCHKVYNKKLDTVDFLSS 62
Query: 87 ------PLDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQ 139
P ++VFRT + EK K+I Q+GTADP+ A++AA + DV IDIN GCPK
Sbjct: 63 SGNLKIPGVTNLVFRTYRKLEKGKLIFQMGTADPKLAVKAANVIADDVDGIDINAGCPKH 122
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALCKRLEAC 195
FS+ GMGAALL PD+ C ILT L+ + P+S KIR+ H + DT+ L RL
Sbjct: 123 FSIHSGMGAALLKKPDLLCEILTCLVEQVGKPHKKPISVKIRLLHEKKDTLDLVSRLVKT 182
Query: 196 GIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
GI + +H RT+ R R R+ + I + Q + I NGG K+ DY
Sbjct: 183 GISNLTLHCRTREMRNREPPIRDYVSEIYDICQKNNVSFIINGGIKKYEDY 233
>gi|259148964|emb|CAY82208.1| Smm1p [Saccharomyces cerevisiae EC1118]
Length = 384
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 141/226 (62%), Gaps = 13/226 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RL+AL +GADLV+S E++D KL++ RK N L T+D+V
Sbjct: 2 VTYAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCIRKENTALQTVDYVV 61
Query: 87 PLD-----GSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P ++VFRT P+ E +K+I QIG+A P A +AA KV +DV+ IDIN GCPK F
Sbjct: 62 PSKVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHF 121
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACG 196
S+ GMG+ALL TPD C IL L+ N+ S P+S KIR+ + + DT+ L KRL A G
Sbjct: 122 SIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLNTKQDTLQLVKRLCATG 181
Query: 197 IIAIGVHGRTKAERPRHR---NRIEMIRTLTQHLKIPVIANGGSKE 239
I + VH R R R + + I I + Q + +I NG ++
Sbjct: 182 ITNLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAIRD 227
>gi|6324342|ref|NP_014412.1| Smm1p [Saccharomyces cerevisiae S288c]
gi|1730664|sp|P53720.1|DUS2_YEAST RecName: Full=tRNA-dihydrouridine(20) synthase [NAD(P)+]; AltName:
Full=Protein SMM1; AltName: Full=tRNA-dihydrouridine
synthase 2
gi|1302496|emb|CAA96293.1| SMM1 [Saccharomyces cerevisiae]
gi|1616627|emb|CAA62924.1| SMM1 protein [Saccharomyces cerevisiae]
gi|151944543|gb|EDN62821.1| tRNA dihydrouridine synthase [Saccharomyces cerevisiae YJM789]
gi|190408986|gb|EDV12251.1| tRNA-dihydrouridine synthase 2 [Saccharomyces cerevisiae RM11-1a]
gi|207341587|gb|EDZ69599.1| YNR015Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285814662|tpg|DAA10556.1| TPA: Smm1p [Saccharomyces cerevisiae S288c]
gi|349580949|dbj|GAA26108.1| K7_Smm1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297003|gb|EIW08104.1| Smm1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 384
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 140/226 (61%), Gaps = 13/226 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RL+AL +GADLV+S E++D KL++ RK N L T+D+V
Sbjct: 2 VTYAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVV 61
Query: 87 PLD-----GSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P ++VFRT P+ E +K+I QIG+A P A +AA KV +DV+ IDIN GCPK F
Sbjct: 62 PSKVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHF 121
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACG 196
S+ GMG+ALL TPD C IL L+ N+ S P+S KIR+ + DT+ L KRL A G
Sbjct: 122 SIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATG 181
Query: 197 IIAIGVHGRTKAERPRHR---NRIEMIRTLTQHLKIPVIANGGSKE 239
I + VH R R R + + I I + Q + +I NG ++
Sbjct: 182 ITNLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAIRD 227
>gi|400602486|gb|EJP70088.1| dihydrouridine synthase [Beauveria bassiana ARSEF 2860]
Length = 420
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 136/229 (59%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RL+AL YGADLV+ E +D ++ T R+VN+ I++
Sbjct: 14 GVDYRGKVVLAPMVRSGELPSRLVALKYGADLVWGPETIDRAIIGTSRRVNEQTGCIEWC 73
Query: 86 ---------DPLDG--SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D SV++ P +E K++ Q+GTADP+RA++AA+ + DVA ID+N
Sbjct: 74 RVQSHGLKEPPPDAKMSVIYAVDPVKEAKKLVFQMGTADPDRAVQAARLIAADVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD IL L+ N++ I +S KIR+ A+T L
Sbjct: 134 AGCPKPFSTSGGMGAALLRTPDKLVAILEALVQNITPEFEIGISVKIRILETAAETETLV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + VH RT RPR R+++ M+ + I + NG
Sbjct: 194 RRLVATGITGLTVHCRTTPMRPRERAIRDQMRMVADVCHEAGIACLMNG 242
>gi|68482812|ref|XP_714632.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|68483004|ref|XP_714536.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|46436113|gb|EAK95481.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|46436216|gb|EAK95582.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
Length = 433
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 136/219 (62%), Gaps = 14/219 (6%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV- 85
I Y+NK+ LAPMVR LP RLL+L YG DL+++ ELVD K++++ R +N LNTID++
Sbjct: 2 IEYANKLCLAPMVRSGELPIRLLSLRYGCDLLWTPELVDKKILQSTRIINQELNTIDYIV 61
Query: 86 ----DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFS 141
+V+FR P E ++ILQ+G++DP+ A++AA+KV DV ID+N GCPK FS
Sbjct: 62 SNHQQSDKKTVIFRKHPVETGRLILQLGSSDPQLAVDAARKVIDDVDGIDLNCGCPKNFS 121
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGI 197
GMGA LL TPD C+IL L+ + IP +SCKIR+F+N + L +++ GI
Sbjct: 122 THSGMGAELLKTPDKLCSILINLVEKIGIPNKKSISCKIRLFNNYDQSKNLIEKILQTGI 181
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
+ +H RT P RNR + + L IP+I G
Sbjct: 182 SNLTIHCRT----PIMRNRQDPVWNFLPKL-IPIIQTAG 215
>gi|45184895|ref|NP_982613.1| AAR072Cp [Ashbya gossypii ATCC 10895]
gi|44980504|gb|AAS50437.1| AAR072Cp [Ashbya gossypii ATCC 10895]
gi|374105812|gb|AEY94723.1| FAAR072Cp [Ashbya gossypii FDAG1]
Length = 384
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 135/222 (60%), Gaps = 13/222 (5%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
NY+ K++LAPMVR LP RLLAL +GADLV+ E++D KLV+ +R ND L T+D+V P
Sbjct: 3 NYAGKLVLAPMVRAGELPTRLLALRHGADLVWGPEIIDKKLVQCQRVPNDELQTVDYVLP 62
Query: 88 LDGS-----VVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFS 141
+ VVFRT P E ++I Q+GTA P A+ AA V DVA ID+N GCPK FS
Sbjct: 63 STHAGKPPVVVFRTAPALEGGRVIFQLGTASPTLAVRAANTVIGDVAGIDVNAGCPKHFS 122
Query: 142 LTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACGI 197
+ GMGAALL TPD C IL L+ + S P+S KIR+ + A T+ L ++L A GI
Sbjct: 123 IHAGMGAALLRTPDTLCGILRALVDEVGRPHSKPISVKIRLLDDLAATLDLVEKLCATGI 182
Query: 198 IAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGG 236
+ VH RT R R R+ + I L Q K+ +I NG
Sbjct: 183 SNLTVHCRTTPMRNREAPIRSYLASIFELCQASKVSLIMNGA 224
>gi|358367791|dbj|GAA84409.1| tRNA dihydrouridine synthase [Aspergillus kawachii IFO 4308]
Length = 446
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 132/228 (57%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RL+AL YGADLV+ E +D + R+VN TI+F
Sbjct: 16 GVDYRGKVVLAPMVRSGELPSRLIALKYGADLVWGPETIDRAMAGAVRRVNPRNGTIEFT 75
Query: 86 D-PLDG---------SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P +G SV++R P REK K+I QIGTA PE A+EAAK V DVA ID+N
Sbjct: 76 RMPSNGGRTEKAGQESVIYRLDPVREKGKLIYQIGTATPEIAVEAAKLVAGDVAGIDVNS 135
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD IL L+ + P +S KIR+ + +T AL
Sbjct: 136 GCPKPFSTSGGMGAALLKTPDKLVAILEALVKEVGTPFQIGISVKIRILKDPEETRALVS 195
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL GI + VH RT RPR R+++ MI + + + NG
Sbjct: 196 RLVKTGITGLTVHCRTPPMRPRERAIRDQVRMIADICHEAGVACVING 243
>gi|256273339|gb|EEU08277.1| Smm1p [Saccharomyces cerevisiae JAY291]
Length = 384
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 140/226 (61%), Gaps = 13/226 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RL+AL +GADLV+S E++D KL++ RK N L T+D+V
Sbjct: 2 VTYAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCIRKENTALQTVDYVV 61
Query: 87 PLD-----GSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P ++VFRT P+ E +K+I QIG+A P A +AA KV +DV+ IDIN GCPK F
Sbjct: 62 PSKVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHF 121
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACG 196
S+ GMG+ALL TPD C IL L+ N+ S P+S KIR+ + DT+ L KRL A G
Sbjct: 122 SIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATG 181
Query: 197 IIAIGVHGRTKAERPRHR---NRIEMIRTLTQHLKIPVIANGGSKE 239
I + VH R R R + + I I + Q + +I NG ++
Sbjct: 182 ITNLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAIRD 227
>gi|354548175|emb|CCE44911.1| hypothetical protein CPAR2_407130 [Candida parapsilosis]
Length = 458
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 138/238 (57%), Gaps = 18/238 (7%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV- 85
I+Y+NK+ LAPMVR LP RLL+L Y DLV+S EL+D KL+ T R N L TID++
Sbjct: 6 IDYTNKVCLAPMVRSGELPIRLLSLKYNCDLVWSPELIDKKLITTTRVENKTLGTIDYIA 65
Query: 86 ---------DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGC 136
P +VVFR P E K+ILQ+GT+DP+ A+EAA+KV DV ID+N GC
Sbjct: 66 KNNHNNNKKQPFPETVVFRKHPHESGKLILQLGTSDPDLAVEAAQKVIDDVDGIDLNCGC 125
Query: 137 PKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRL 192
PK FS GMGA LL TPD+ C+IL L+ + + P+SCKIR+ N + L K++
Sbjct: 126 PKSFSTHSGMGAELLKTPDLLCSILQNLVIKVGKPKNKPISCKIRLLPNFEASHKLVKQI 185
Query: 193 -EACGIIAIGVHGRTKAERPR---HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV 246
GI + +H RT R R + N + + L Q I V+ NG + +D V
Sbjct: 186 CSTTGIANLTIHCRTPIMRNRQDPYWNYLPKLIPLIQSYGISVVLNGNFQSRMDLDTV 243
>gi|149239919|ref|XP_001525835.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449958|gb|EDK44214.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 504
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 135/224 (60%), Gaps = 19/224 (8%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+NK+ LAPMVR LP RLLAL YG DLV+S E +D K+++T+R+VN LNTID++
Sbjct: 7 LTYTNKVCLAPMVRSGELPIRLLALRYGCDLVWSPEYIDRKIIQTQRRVNAELNTIDYII 66
Query: 87 PLD----------GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGC 136
P + +VVFR P E K+I Q+GT+ PE A+EAA +V DV ID+N GC
Sbjct: 67 PNNKDPSKMKHNQDNVVFRKHPEETGKLIFQLGTSTPELAVEAALRVIEDVDGIDLNCGC 126
Query: 137 PKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALCKRL 192
PK FS GGMGA LL TPDI C+IL L+ + P+SCKIR+ N + L +++
Sbjct: 127 PKSFSTHGGMGAELLKTPDILCSILRALVEKVGNPNKKPISCKIRLLPNFEASKLLIEQI 186
Query: 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
GI + +H RT P RNR + L IP+I + G
Sbjct: 187 CQTGIRNLTIHCRT----PIMRNRQDPFWNYLPKL-IPIIESHG 225
>gi|47207088|emb|CAF94223.1| unnamed protein product [Tetraodon nigroviridis]
Length = 176
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 106/131 (80%), Gaps = 1/131 (0%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ +++SN LAPMVR+ TLP RLLALDYGAD+VY EEL+D K+ + R VN++L+T+DF
Sbjct: 4 SRLSFSNITALAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMAQCHRVVNEVLDTVDF 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
V P D V+FRTC +EKNK++ Q+GTADP+RAL A+ VE DVAAID+NMGCPK++S G
Sbjct: 64 VAP-DERVMFRTCEKEKNKVVFQMGTADPDRALTVAQLVERDVAAIDVNMGCPKEYSTKG 122
Query: 145 GMGAALLSTPD 155
GMGAALLS PD
Sbjct: 123 GMGAALLSDPD 133
>gi|150865372|ref|XP_001384560.2| hypothetical protein PICST_72127 [Scheffersomyces stipitis CBS
6054]
gi|149386628|gb|ABN66531.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 390
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 140/226 (61%), Gaps = 10/226 (4%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV- 85
+NY K+ LAPMVR LP R+++L YGADLV+S E+VD KL++T R VN+ + T+D+V
Sbjct: 2 VNYVGKLCLAPMVRSGELPNRIMSLKYGADLVWSPEIVDRKLIQTRRVVNEEIKTVDYVV 61
Query: 86 -DPLDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
P +VFRT P E K+ILQ+G++DP+ A++AA+KV DV ID+N GCPK FS
Sbjct: 62 DSPHGAKLVFRTFPELEAGKLILQLGSSDPDLAVQAAEKVIKDVDGIDLNCGCPKSFSTH 121
Query: 144 GGMGAALLSTPDIACNILTTLISNLSI----PVSCKIRVFHNEADTIALCKRLEACGIIA 199
GMGAALLSTP++ C++L L+ + I P+SCKIR+ + T +L ++ GI
Sbjct: 122 SGMGAALLSTPELLCSVLRDLVQKVGIPNQKPISCKIRLLDDLEATRSLVDQICETGIAN 181
Query: 200 IGVHGRTKAERPRHR---NRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ +H R +A R R + + I Q I V+ NG + D
Sbjct: 182 LTIHCRQRAMRNRQEPIWHYLSEIIPRVQSKGISVVINGNLQSKAD 227
>gi|254581674|ref|XP_002496822.1| ZYRO0D08932p [Zygosaccharomyces rouxii]
gi|238939714|emb|CAR27889.1| ZYRO0D08932p [Zygosaccharomyces rouxii]
Length = 373
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 134/220 (60%), Gaps = 8/220 (3%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++++ K++LAPMVR LP R+LA+ GADLV+ E++D KL++ +R VN+ L +D++
Sbjct: 2 LSFAGKLVLAPMVRAGELPTRILAIRNGADLVWGPEIIDKKLIQCKRHVNEKLGCVDYLV 61
Query: 87 PLDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
S VFRTCP+ EK KI+ QIGT+ P A++AA V DV IDIN GCPK FS+ G
Sbjct: 62 DGTTSPVFRTCPQIEKGKIVFQIGTSTPSLAIQAALTVIQDVDGIDINAGCPKHFSIHSG 121
Query: 146 MGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGIIAIG 201
MGAALL TPD C IL L+ + P +S KIR+ N DT+ L RL GI +
Sbjct: 122 MGAALLRTPDKLCEILCELVEKVGRPYGKTISVKIRLLDNREDTLQLINRLCQTGISHLT 181
Query: 202 VHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSK 238
VH RT R R R I+ I + Q + +I NGG K
Sbjct: 182 VHCRTTPMRNREQPIRGYIKEIYEVCQTNGVTLIINGGIK 221
>gi|254566505|ref|XP_002490363.1| Dihydrouridine synthase, member of a family of dihydrouridine
synthases [Komagataella pastoris GS115]
gi|238030159|emb|CAY68082.1| Dihydrouridine synthase, member of a family of dihydrouridine
synthases [Komagataella pastoris GS115]
gi|328350757|emb|CCA37157.1| tRNA-dihydrouridine synthase 2 [Komagataella pastoris CBS 7435]
Length = 366
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 143/232 (61%), Gaps = 15/232 (6%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+++ K +LAPMVR+ LP RLLAL +GADLV+ E +D K+++ ER N L TIDF+
Sbjct: 2 VDFRGKFVLAPMVRVGELPTRLLALKHGADLVWGPETIDKKILQCERVENRKLGTIDFLS 61
Query: 87 -------PLDGSVVFRT-CPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
P ++VFR P EK K+I Q+GTA+PE A+ AAK V +DV+ ID+N GCPK
Sbjct: 62 QGGSTKVPGVTNLVFRVYPPAEKGKLIFQMGTANPELAVRAAKIVVNDVSGIDVNAGCPK 121
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEA 194
FS+ GMGAALLSTP + ILT L++ + P+S KIRV NE T+ L +RL
Sbjct: 122 HFSIHSGMGAALLSTPALLEEILTRLVTEVGRPNGKPISVKIRVLENEQKTLELVERLVK 181
Query: 195 CGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
GI + VH RTK R R R+ +E I + K+ ++ NGG K+ D+
Sbjct: 182 TGISNLTVHCRTKNMRNREAPIRDYLEGILDHCRSNKVSLVINGGIKDRNDF 233
>gi|134057270|emb|CAK37884.1| unnamed protein product [Aspergillus niger]
gi|350635062|gb|EHA23424.1| hypothetical protein ASPNIDRAFT_47141 [Aspergillus niger ATCC 1015]
Length = 446
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/228 (44%), Positives = 132/228 (57%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RL+AL YGADLV+ E +D + R+VN TI+F
Sbjct: 16 GVDYRGKVVLAPMVRSGELPSRLIALKYGADLVWGPETIDRAMAGAIRRVNPRNGTIEFT 75
Query: 86 D-PLDG---------SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P +G SV++R P REK K+I QIGTA PE A++AAK V DVA ID+N
Sbjct: 76 RMPSNGGRTEKAGQESVIYRLDPVREKGKLIYQIGTATPEIAVQAAKLVAGDVAGIDVNS 135
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD IL L+ + P +S KIR+ + +T AL
Sbjct: 136 GCPKPFSTSGGMGAALLKTPDKLVAILEALVKEVGTPFQIGISVKIRILKDPEETRALVS 195
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL GI + VH RT RPR R+++ MI + + + NG
Sbjct: 196 RLVKTGITGLTVHCRTPPMRPRERAIRDQVRMIADICHEAGVACVING 243
>gi|317027955|ref|XP_001400331.2| tRNA dihydrouridine synthase (Smm1) [Aspergillus niger CBS 513.88]
Length = 454
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/228 (44%), Positives = 132/228 (57%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RL+AL YGADLV+ E +D + R+VN TI+F
Sbjct: 24 GVDYRGKVVLAPMVRSGELPSRLIALKYGADLVWGPETIDRAMAGAIRRVNPRNGTIEFT 83
Query: 86 D-PLDG---------SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P +G SV++R P REK K+I QIGTA PE A++AAK V DVA ID+N
Sbjct: 84 RMPSNGGRTEKAGQESVIYRLDPVREKGKLIYQIGTATPEIAVQAAKLVAGDVAGIDVNS 143
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD IL L+ + P +S KIR+ + +T AL
Sbjct: 144 GCPKPFSTSGGMGAALLKTPDKLVAILEALVKEVGTPFQIGISVKIRILKDPEETRALVS 203
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL GI + VH RT RPR R+++ MI + + + NG
Sbjct: 204 RLVKTGITGLTVHCRTPPMRPRERAIRDQVRMIADICHEAGVACVING 251
>gi|365991547|ref|XP_003672602.1| hypothetical protein NDAI_0K01680 [Naumovozyma dairenensis CBS 421]
gi|343771378|emb|CCD27359.1| hypothetical protein NDAI_0K01680 [Naumovozyma dairenensis CBS 421]
Length = 375
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 8/225 (3%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y++K++LAPMVR LP RLLAL +G DLV+S E++D KL++ R +N LNTID+V
Sbjct: 2 VKYASKLVLAPMVRAGELPSRLLALRHGCDLVWSPEIIDKKLLQCRRLINTKLNTIDYVT 61
Query: 87 PLDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
++VFR+ PR E K+I Q+GTA PE A +AA K+ DV ID+N GCPK FS+ G
Sbjct: 62 GSKDTLVFRSFPRDEAGKLIFQMGTASPELARDAALKIIQDVDGIDVNAGCPKHFSIHAG 121
Query: 146 MGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACGIIAIG 201
MGAALL +P+ C+IL L+ N+ P+S KIR+ ++ +T L + L GI +
Sbjct: 122 MGAALLQSPEKLCDILKALVENVGKPNGKPISVKIRLLDDQENTFKLVEDLCQTGIQNLT 181
Query: 202 VHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
VH RT R R R+ ++ I + Q + +I NG + D+
Sbjct: 182 VHCRTTPMRNREKPIRDYLKGIFEICQKYDVSLIMNGAINDRNDF 226
>gi|186703885|emb|CAQ43570.1| tRNA-dihydrouridine synthase 2 [Zygosaccharomyces rouxii]
Length = 373
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 134/220 (60%), Gaps = 8/220 (3%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++++ K++LAPMVR LP R+LA+ GADLV+ E++D KL++ +R VN+ L +D++
Sbjct: 2 LSFAGKLVLAPMVRAGELPTRILAIRNGADLVWGPEIIDKKLIQCKRHVNEKLGCVDYLV 61
Query: 87 PLDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
S VFRTCP+ EK KI+ QIGT+ P A++AA V DV IDIN GCPK FS+ G
Sbjct: 62 DGTTSPVFRTCPQIEKGKIVFQIGTSTPSLAIQAALTVIQDVDGIDINAGCPKHFSIHSG 121
Query: 146 MGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGIIAIG 201
MGAALL TPD C IL L+ + P +S KIR+ N DT+ L RL GI +
Sbjct: 122 MGAALLRTPDKLCEILCELVEKVGRPYGKTISVKIRLLDNREDTLQLINRLCQNGISHLT 181
Query: 202 VHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSK 238
VH RT R R R I+ I + Q + +I NGG K
Sbjct: 182 VHCRTTPMRNREQPIRGYIKEIYEVCQTNGVTLIINGGIK 221
>gi|115384898|ref|XP_001208996.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196688|gb|EAU38388.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 441
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/228 (42%), Positives = 131/228 (57%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RL++L YGADLV+ E +D L+ T R+VN TI+F
Sbjct: 16 GVDYRGKVVLAPMVRSGELPSRLVSLKYGADLVWGPETIDKALIGTSRRVNPRNGTIEFT 75
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P S+++R P REK K+I QIGTA PE A++AAK V DVA ID+N
Sbjct: 76 RTPSNGGRTDKPARESIIYRLDPVREKGKLIFQIGTASPELAVQAAKIVAGDVAGIDVNS 135
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD IL L+ + P +S KIR+ T +L
Sbjct: 136 GCPKPFSTSGGMGAALLRTPDKLVAILEALVREVGTPYQIGISVKIRILETPELTESLVS 195
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL GI + VH RT RPR R+++ M+ + + + + NG
Sbjct: 196 RLVKTGITGLTVHCRTTPMRPRERAIRDQLRMVANVCHNAGVACVMNG 243
>gi|390604851|gb|EIN14242.1| FMN-linked oxidoreductase [Punctularia strigosozonata HHB-11173
SS5]
Length = 466
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 133/215 (61%), Gaps = 9/215 (4%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
+Y N ++LAPMVR LP RL AL YGA LV+ E+VD ++ ER V++ TI +
Sbjct: 30 DYKNGVVLAPMVRSGALPTRLFALKYGASLVWGPEMVDKAILHAERTVDERTGTIVYRG- 88
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
G +F T P EK I QIG+ADPE A++AAK V DV+ ID+N GCPK FS GMG
Sbjct: 89 -AGKPMFTTHPIEKPYFIYQIGSADPELAVKAAKFVMQDVSGIDLNCGCPKPFSTHAGMG 147
Query: 148 AALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
AALL+ PD+ C+ILT L L I +S KIR+ ++ DT+ L +R+ G+ A+ VH R
Sbjct: 148 AALLTNPDLLCSILTALRRELPPEISISAKIRLLPSQEDTLKLVERIVNTGVNALTVHCR 207
Query: 206 TKAERPRHRNRIEMIRTLTQHLK-----IPVIANG 235
T+ RPR R IE +R + + ++ VIANG
Sbjct: 208 TRNMRPRERALIERLREIVEFVERLGKGTAVIANG 242
>gi|325092392|gb|EGC45702.1| tRNA-dihydrouridine synthase [Ajellomyces capsulatus H88]
Length = 495
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 144/255 (56%), Gaps = 28/255 (10%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D L+ R++N + ++F
Sbjct: 32 GVDYRGKIVLAPMVRSGELPSRLLALKYGADLVWGPETIDRALIGCTRRINPRNSMVEFT 91
Query: 86 D-PLDG----------SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P +G S+++R PR E K++ QIGTA P+ A++AAK + DVA ID+N
Sbjct: 92 RLPSNGGRENSQAAKESIIYRLDPRRESGKLVFQIGTASPDLAVQAAKIIAADVAGIDVN 151
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALC 189
GCPK FS TGGMGAALL TPD +ILT L+ + P +S KIR+ + T L
Sbjct: 152 AGCPKPFSTTGGMGAALLQTPDRLVSILTALVQQVGTPYQIGISVKIRLLADPERTRDLV 211
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG-------GSKE 239
RL A GI + VH RT RPR R+++ MI ++ + + ++ NG G
Sbjct: 212 TRLCATGITGLTVHCRTTPMRPRERAIRDQLPMIASICRAAGVAILVNGDVESRDHGLAL 271
Query: 240 IVDYG--GVFSLNCA 252
+ +YG G CA
Sbjct: 272 MAEYGVDGAMIATCA 286
>gi|240281112|gb|EER44615.1| tRNA dihydrouridine synthase [Ajellomyces capsulatus H143]
Length = 495
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 140/238 (58%), Gaps = 20/238 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D L+ R++N + ++F
Sbjct: 32 GVDYRGKIVLAPMVRSGELPSRLLALKYGADLVWGPETIDRALIGCTRRINPRNSMVEFT 91
Query: 86 D-PLDG----------SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P +G S+++R PR E K++ QIGTA P+ A++AAK + DVA ID+N
Sbjct: 92 RLPSNGGRENSQAAKESIIYRLDPRRESGKLVFQIGTASPDLAVQAAKIIAADVAGIDVN 151
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALC 189
GCPK FS TGGMGAALL TPD +ILT L+ + P +S KIR+ + T L
Sbjct: 152 AGCPKPFSTTGGMGAALLQTPDRLVSILTALVQQVGTPYQIGISVKIRLLADPERTRDLV 211
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDYG 244
RL A GI + VH RT RPR R+++ MI ++ + + ++ N G E D+G
Sbjct: 212 TRLCATGITGLTVHCRTTPMRPRERAIRDQLPMIASICRAAGVAILVN-GDVESRDHG 268
>gi|225562406|gb|EEH10685.1| tRNA-dihydrouridine synthase [Ajellomyces capsulatus G186AR]
Length = 495
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 140/238 (58%), Gaps = 20/238 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D L+ R++N + ++F
Sbjct: 32 GVDYRGKIVLAPMVRSGELPSRLLALKYGADLVWGPETIDRALIGCTRRINPRNSMVEFT 91
Query: 86 D-PLDG----------SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P +G S+++R PR E K++ QIGTA P+ A++AAK + DVA ID+N
Sbjct: 92 RLPSNGGRENNQAAKESIIYRLDPRRESGKLVFQIGTASPDLAVQAAKIIAADVAGIDVN 151
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALC 189
GCPK FS TGGMGAALL TPD +ILT L+ + P +S KIR+ + T L
Sbjct: 152 AGCPKPFSTTGGMGAALLQTPDRLVSILTALVQQVGTPYQIGISVKIRLLADPERTRDLV 211
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDYG 244
RL A GI + VH RT RPR R+++ MI ++ + + ++ N G E D+G
Sbjct: 212 TRLCATGITGLTVHCRTTPMRPRERAIRDQLPMIASICRAAGVAILVN-GDVESRDHG 268
>gi|83766214|dbj|BAE56357.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870624|gb|EIT79804.1| tRNA-dihydrouridine synthase [Aspergillus oryzae 3.042]
Length = 444
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 130/228 (57%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RL AL YGADLV+ E +D L R+VN I++
Sbjct: 16 GVDYRGKIVLAPMVRSGELPSRLTALKYGADLVWGPETIDRALAGASRRVNPRNGCIEYT 75
Query: 86 D-PLDG---------SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P +G SV++R P REK K+I Q+GTA PE A++AAK V DVA ID+N
Sbjct: 76 RLPSNGGRTEAAPQESVIYRLDPVREKGKLIFQLGTASPELAVQAAKVVAGDVAGIDVNS 135
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL L+ + P +S KIR+ T AL
Sbjct: 136 GCPKPFSTSGGMGAALLRTPDKLVSILEALVREIGEPYQIGISVKIRILEKPEITEALVS 195
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL GI + VH RT A RPR R ++ MIR + + + NG
Sbjct: 196 RLVKTGITGLTVHCRTPAMRPRERAIREQLRMIRDICHDAGVACLMNG 243
>gi|225680962|gb|EEH19246.1| tRNA dihydrouridine synthase [Paracoccidioides brasiliensis Pb03]
Length = 484
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 137/236 (58%), Gaps = 24/236 (10%)
Query: 24 QANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTID 83
Q ++Y KI+LAPMVR LP RLLAL YGADLV+ E +D L+ R++N + I+
Sbjct: 28 QNGVDYRGKIVLAPMVRSGELPSRLLALKYGADLVWGPETIDRALIGCTRQINPRTSMIE 87
Query: 84 FV----------------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHD 126
F P S+++R P RE+ K+I QIGTA P A+EAAK + D
Sbjct: 88 FTRLPSNGGCQNPAKPNQTPPKESIIYRLDPHRERGKLIFQIGTASPILAVEAAKIIAPD 147
Query: 127 VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNE 182
VA ID+N GCPK FS +GGMGAALL PD+ +ILT L++ + P +S KIR+ +
Sbjct: 148 VAGIDVNAGCPKPFSTSGGMGAALLQKPDLLVSILTALVTEVGAPHQISISVKIRLLSDP 207
Query: 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
T L RL A GI + VH RT RPR R+++ MI ++ ++ + ++ NG
Sbjct: 208 ERTRDLVTRLCATGITGLTVHCRTTPMRPRERAIRDQLPMIASICRNAGVAILMNG 263
>gi|226292672|gb|EEH48092.1| tRNA-dihydrouridine synthase [Paracoccidioides brasiliensis Pb18]
Length = 475
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 137/236 (58%), Gaps = 24/236 (10%)
Query: 24 QANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTID 83
Q ++Y KI+LAPMVR LP RLLAL YGADLV+ E +D L+ R++N + I+
Sbjct: 28 QNGVDYRGKIVLAPMVRSGELPSRLLALKYGADLVWGPETIDRALIGCTRQINPRTSMIE 87
Query: 84 FV----------------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHD 126
F P S+++R P RE+ K+I QIGTA P A+EAAK + D
Sbjct: 88 FTRLPSNGGCQNPAKPNQTPPKESIIYRLDPHRERGKLIFQIGTASPILAVEAAKIIAPD 147
Query: 127 VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNE 182
VA ID+N GCPK FS +GGMGAALL PD+ +ILT L++ + P +S KIR+ +
Sbjct: 148 VAGIDVNAGCPKPFSTSGGMGAALLQKPDLLVSILTALVTEVGAPHQISISVKIRLLSDP 207
Query: 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
T L RL A GI + VH RT RPR R+++ MI ++ ++ + ++ NG
Sbjct: 208 ERTRDLVTRLCATGITGLTVHCRTTPMRPRERAIRDQLPMIASICRNAGVAILMNG 263
>gi|398397567|ref|XP_003852241.1| hypothetical protein MYCGRDRAFT_41619 [Zymoseptoria tritici IPO323]
gi|339472122|gb|EGP87217.1| hypothetical protein MYCGRDRAFT_41619 [Zymoseptoria tritici IPO323]
Length = 438
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 133/232 (57%), Gaps = 22/232 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR P RLLAL YGADLV+ E +D L+ T R N + TIDF
Sbjct: 14 GVDYRGKIVLAPMVRSGECPSRLLALKYGADLVWGPETIDKALIGTTRHENPITKTIDFT 73
Query: 86 --------DP-----LDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAID 131
+P S+++R P RE K+I QIGTA+P+ A+EAAK + VA ID
Sbjct: 74 RISSNGAKNPSLTPEQRESIIYRMHPEREGRKLIYQIGTANPDTAVEAAKLIAPHVAGID 133
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIA 187
+N GCPK FS +GGMGAALL TP+ C+IL L+ ++ P +S KIR+ +T
Sbjct: 134 VNAGCPKPFSTSGGMGAALLKTPEKLCSILRALVKDVGEPFEIGISVKIRILDTAEETAT 193
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRHR----NRIEMIRTLTQHLKIPVIANG 235
L K+L A GI + VH RT RPR R R++M+ + I + NG
Sbjct: 194 LVKQLVATGITGLTVHCRTTPMRPRERAIRDERLKMVVEICHDAGIACVMNG 245
>gi|393228955|gb|EJD36588.1| FMN-linked oxidoreductase [Auricularia delicata TFB-10046 SS5]
Length = 421
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 136/226 (60%), Gaps = 9/226 (3%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ +NY + LAPMVR LP RL +L YGA LV++ E+VD ++ R ++ I +
Sbjct: 26 STLNYRGGLFLAPMVRSGALPTRLYSLAYGASLVWAPEIVDRAMLHATRDQDESTGVISY 85
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
+G +F T P EK +++ QIG+A PE AL+AA +V DV+A+D+N GCPK FS G
Sbjct: 86 RG-TNGKPIFTTHPLEKRRLVYQIGSATPELALQAALRVVADVSAVDLNCGCPKPFSTHG 144
Query: 145 GMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GMGAALLSTPD+ C+IL TL L I V+ KIR+ + +TI L KR+ CG+ A+ V
Sbjct: 145 GMGAALLSTPDLLCDILRTLREGLPPEIAVTAKIRLLKTQEETIDLVKRIIECGVSAVTV 204
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLK------IPVIANGGSKEIVD 242
H RT+ R R ++ + +K +P+IANG K + D
Sbjct: 205 HCRTREMRKGERALPHRLKGIVDAVKALPGGGVPIIANGDCKGVED 250
>gi|410080470|ref|XP_003957815.1| hypothetical protein KAFR_0F00830 [Kazachstania africana CBS 2517]
gi|372464402|emb|CCF58680.1| hypothetical protein KAFR_0F00830 [Kazachstania africana CBS 2517]
Length = 380
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 129/204 (63%), Gaps = 7/204 (3%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y+ K++LAPMVR LP RLLAL GADLV+S E++D KL+ T RK+N L TID+
Sbjct: 2 VSYAGKLVLAPMVRAGELPTRLLALQNGADLVWSPEIIDKKLIATHRKINTKLKTIDYTI 61
Query: 87 PLDG--SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
D ++VFRT P E K+I QIG+ P+ A+ A+ KV +DV ID+N GCPK FS+
Sbjct: 62 SKDAKETLVFRTFPELESGKLIFQIGSGSPDLAVAASLKVINDVDGIDLNCGCPKHFSVH 121
Query: 144 GGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACGIIA 199
GMGAALL PD+ C+IL+ L++ + + P+SCKIR+ N DT+ L ++ GI
Sbjct: 122 AGMGAALLRKPDLLCSILSHLVNKVGNPFNKPISCKIRILENSQDTLDLVSKICVTGIKN 181
Query: 200 IGVHGRTKAERPRHRNRIEMIRTL 223
+ VH RT R R E I +
Sbjct: 182 LTVHFRTPDMRNREAPNYEYIHDI 205
>gi|50557204|ref|XP_506010.1| YALI0F29205p [Yarrowia lipolytica]
gi|49651880|emb|CAG78822.1| YALI0F29205p [Yarrowia lipolytica CLIB122]
Length = 394
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 17/245 (6%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y+ K++LAPMVR P RLL++ YGADLV+S E+VD K+++ R+ N+ T+DF
Sbjct: 2 VSYAGKLVLAPMVRSGEFPTRLLSIKYGADLVWSPEIVDKKMLECTREWNEKTKTVDFTV 61
Query: 87 PLDG-------SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQ 139
G +++FRT E++KII Q+G+A+PE A+ A K V DVA ID+N GCPK
Sbjct: 62 SQQGKGNTEKKAIIFRTSEAERDKIIFQVGSANPEIAVAACKMVAKDVAGIDLNCGCPKH 121
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEAC 195
FS+ GMGAALL TPD IL L+ + P +S KIR+ E T+ L RL
Sbjct: 122 FSMHAGMGAALLKTPDKLVAILEALVKEVGEPFNVSISVKIRLLETEEKTLELVDRLAQT 181
Query: 196 GIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG---GSKEIVDYGGVFSL 249
G+ + +H RT RPR R+ + + + I + NG G E+ D + +
Sbjct: 182 GVKNLTIHCRTTPMRPREPVIRDTLAKVAEVCHKHGITCLVNGDVEGRHELADLQEKYGI 241
Query: 250 NCAFL 254
+ A +
Sbjct: 242 DGAMI 246
>gi|171696070|ref|XP_001912959.1| hypothetical protein [Podospora anserina S mat+]
gi|170948277|emb|CAP60441.1| unnamed protein product [Podospora anserina S mat+]
Length = 516
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 132/227 (58%), Gaps = 17/227 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E VDH L+ T R+ N + I++
Sbjct: 113 GVDYRGKIVLAPMVRSGELPARLLALKYGADLVWGPETVDHSLIGTTRRTNPRTSCIEWT 172
Query: 86 DP---------LDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
P D +V+FR P REK K++ QIGT+DP+RAL AA+ V DVA ID+N G
Sbjct: 173 RPPSQAHNKAGYDENVIFRLDPTREKGKLVFQIGTSDPDRALAAARLVAGDVAGIDVNAG 232
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTL----ISNLSIPVSCKIRVFHNEADTIALCKR 191
CPK FS +GGMGAALL TPD IL L I I VS KIR+ T AL +R
Sbjct: 233 CPKPFSTSGGMGAALLQTPDKLVAILENLTRHIIPEFGIGVSVKIRLLETPEKTEALVRR 292
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L GI + +H RT RPR R ++ MI + + + + NG
Sbjct: 293 LVGTGITGLTIHCRTTPMRPRERAIRGQLRMIGYICREAGVACVVNG 339
>gi|327348456|gb|EGE77313.1| tRNA dihydrouridine synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 508
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 139/238 (58%), Gaps = 20/238 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D L+ R++N + ++F
Sbjct: 33 GVDYRGKIVLAPMVRSGELPSRLLALKYGADLVWGPETIDRALIGCTRRINPRNSMVEFT 92
Query: 86 D-PLDG----------SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P +G SV++R P RE K+I QIGTA P A++AAK + DVA ID+N
Sbjct: 93 RLPSNGGRQNTPNAKESVIYRIDPHRESGKLIFQIGTASPNLAVQAAKIIAADVAGIDVN 152
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD+ +ILT L+ + P +S KIR+ + T L
Sbjct: 153 AGCPKPFSTSGGMGAALLQTPDLLVSILTALVQQIGNPYQIGISVKIRLLADPERTRDLV 212
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDYG 244
RL A GI + VH RT RPR R ++ MI ++ + + ++ N G E D+G
Sbjct: 213 TRLCATGITGLTVHCRTTPMRPRERAIRAQLPMIASICRAAGVAILMN-GDVESRDHG 269
>gi|169623807|ref|XP_001805310.1| hypothetical protein SNOG_15147 [Phaeosphaeria nodorum SN15]
gi|111056252|gb|EAT77372.1| hypothetical protein SNOG_15147 [Phaeosphaeria nodorum SN15]
Length = 442
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 140/231 (60%), Gaps = 21/231 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF- 84
++Y ++LAPMVR LP RLLAL YGADLV+ E +D ++ T R++N NT+++
Sbjct: 15 GVDYRGTVVLAPMVRSGELPSRLLALKYGADLVWGPETIDRAIIGTTRRMNPHTNTLEWS 74
Query: 85 -----------VDPLD-GSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
+DP + SV++R P EK K+I Q+GTA+PE A++AAK V DVA ID
Sbjct: 75 RLPTSKLKNPALDPENRESVLYRIHPELEKGKLIYQMGTANPELAVKAAKMVAADVAGID 134
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIA 187
+N GCPK FS GGMGAALL TPD+ CNILT+L+ + P +S KIR+ +T A
Sbjct: 135 VNSGCPKPFSTAGGMGAALLKTPDLLCNILTSLVEEVGKPYEIGISVKIRILDTPEETAA 194
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L RL GI + VH RT RPR R++++MI + + + + NG
Sbjct: 195 LVSRLVKTGITGLTVHCRTTPMRPRERAIRHQLKMIGNICREAGVACVMNG 245
>gi|453082623|gb|EMF10670.1| tRNA dihydrouridine synthase [Mycosphaerella populorum SO2202]
Length = 454
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 131/232 (56%), Gaps = 22/232 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR P RLLAL YGADLV+ E +D L+ T R+ N + +DF
Sbjct: 15 GVDYRGKIVLAPMVRSGECPSRLLALKYGADLVWGPETIDKALIGTTRRENPVTKAVDFT 74
Query: 86 --------DPL-----DGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAID 131
+P SV++R P RE K+I QIGTA+PE A+EAAK + DVA ID
Sbjct: 75 RISSNGAKNPTLHPDQRESVIYRLHPEREGKKLIYQIGTANPETAVEAAKLIAKDVAGID 134
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIA 187
+N GCPK FS +GGMGAALL TPD C+IL L+ + IP +S KIR+ +T
Sbjct: 135 VNAGCPKPFSTSGGMGAALLKTPDKLCSILRALVQEVGIPFEIGISVKIRILDTPEETQD 194
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRHR----NRIEMIRTLTQHLKIPVIANG 235
L ++L GI + VH RT RPR R+ ++R + + NG
Sbjct: 195 LVRKLCQTGIHGLTVHCRTTPMRPREAAIRDERLHVVRQTCHEAGVSCLING 246
>gi|242822853|ref|XP_002487972.1| tRNA dihydrouridine synthase (Smm1), putative [Talaromyces
stipitatus ATCC 10500]
gi|218712893|gb|EED12318.1| tRNA dihydrouridine synthase (Smm1), putative [Talaromyces
stipitatus ATCC 10500]
Length = 787
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/228 (44%), Positives = 135/228 (59%), Gaps = 19/228 (8%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV- 85
++Y KI+LAPMVR LP RL+AL YGADLV+ E +D ++ R+VN NTI+F
Sbjct: 361 VDYRGKIVLAPMVRSGELPSRLIALKYGADLVWGPETIDRAIMGAVRRVNPRNNTIEFTR 420
Query: 86 ---------DPL-DGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
D L SV++R P EK K+I QIGTA PE A++AAK V DVA ID+N
Sbjct: 421 IPSNSSKSADQLPKESVIYRIDPENEKGKLIFQIGTASPEFAVQAAKVVAGDVAGIDVNS 480
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL +L+ + P +S KIR+ T +L
Sbjct: 481 GCPKPFSTSGGMGAALLRTPDKLVSILESLVREVGTPYKIGISVKIRLLETPELTKSLVT 540
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL A GI + +H RT RPR R+++ MI + ++ + + NG
Sbjct: 541 RLVATGITGLTIHCRTTPMRPRERAIRDQLSMIAEVCRNAGVACVMNG 588
>gi|302665254|ref|XP_003024239.1| hypothetical protein TRV_01589 [Trichophyton verrucosum HKI 0517]
gi|291188286|gb|EFE43628.1| hypothetical protein TRV_01589 [Trichophyton verrucosum HKI 0517]
Length = 640
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 135/231 (58%), Gaps = 17/231 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RL++L YGADLV+ E +D L+ R++N NT++F
Sbjct: 240 GVDYRGKIVLAPMVRSGELPSRLVSLKYGADLVWGPETIDRSLIGAVRRINPRNNTVEFT 299
Query: 86 --------DPLDG-SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
D D SV++R P REK K++ Q+GTA PE A+EAAK + DV+ ID+N G
Sbjct: 300 RVPSHPGPDAKDKVSVIYRIDPAREKGKLVFQLGTASPELAVEAAKVIADDVSGIDVNAG 359
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKR 191
CPK FS GGMGAALL TPD +IL L+ + P +S KIR+ + DT L
Sbjct: 360 CPKPFSTLGGMGAALLQTPDKLVSILEALVREVGRPWQIGISVKIRLLKDPKDTERLVTA 419
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKE 239
L A GI + VH RT RPR R+++ MI ++ + + + NG K
Sbjct: 420 LCATGITGLTVHCRTTPMRPREAAIRDQLPMIASICRSAGVACLMNGDVKS 470
>gi|452979891|gb|EME79653.1| hypothetical protein MYCFIDRAFT_190471 [Pseudocercospora fijiensis
CIRAD86]
Length = 368
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 133/231 (57%), Gaps = 21/231 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR P RLLAL YGADLV+ E +D L+ T R N +T++F
Sbjct: 14 GVDYRGKIVLAPMVRSGECPSRLLALKYGADLVWGPETIDKALIGTTRHENPNTSTVEFT 73
Query: 86 --------DPL-----DGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAID 131
+P SV++R P RE ++I QIGTA+PE A+EAAK + DVA ID
Sbjct: 74 RVSSNGAKNPTLSPEQRESVIYRLHPGREGKQLIYQIGTANPETAVEAAKLIAKDVAGID 133
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIA 187
+N GCPK FS +GGMGAALL TP+ C+IL L+ + P +S KIR+ DT A
Sbjct: 134 VNAGCPKPFSTSGGMGAALLKTPEKLCSILRALVKEVGEPNEIGISVKIRILDEPEDTRA 193
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L +L GII + VH RT RPR R++++M+ + + NG
Sbjct: 194 LVAKLCQTGIIGLTVHCRTTPMRPRERAIRDQLKMVAETCHQAGVACLMNG 244
>gi|326482381|gb|EGE06391.1| tRNA-dihydrouridine synthase [Trichophyton equinum CBS 127.97]
Length = 419
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 135/231 (58%), Gaps = 17/231 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RL++L YGADLV+ E +D L+ R++N NT++F
Sbjct: 20 GVDYRGKVVLAPMVRSGELPSRLVSLKYGADLVWGPETIDRSLIGAVRRINPRNNTVEFT 79
Query: 86 --------DPLDG-SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
D D SV++R P REK K++ Q+GTA PE A+EAAK + DV+ ID+N G
Sbjct: 80 RVPSHPGPDATDKVSVIYRIDPAREKGKLVFQLGTASPELAVEAAKVIADDVSGIDVNAG 139
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKR 191
CPK FS GGMGAALL TPD +IL L+ + P +S KIR+ + DT L
Sbjct: 140 CPKPFSTLGGMGAALLQTPDKLVSILEALVREVGQPWQIGISVKIRLLKDPRDTERLVTA 199
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKE 239
L A GI + VH RT RPR R+++ MI ++ + + + NG K
Sbjct: 200 LCATGITGLTVHCRTTPMRPREAAIRDQLPMIASICRSAGVACLMNGDVKS 250
>gi|302502698|ref|XP_003013310.1| hypothetical protein ARB_00495 [Arthroderma benhamiae CBS 112371]
gi|291176873|gb|EFE32670.1| hypothetical protein ARB_00495 [Arthroderma benhamiae CBS 112371]
Length = 476
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 135/231 (58%), Gaps = 17/231 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RL++L YGADLV+ E +D L+ R++N NT++F
Sbjct: 72 GVDYRGKIVLAPMVRSGELPSRLVSLKYGADLVWGPETIDRSLIGAVRRINPRNNTVEFT 131
Query: 86 --------DPLDG-SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
D D SV++R P REK K++ Q+GTA PE A+EAAK + DV+ ID+N G
Sbjct: 132 RVPSHPGPDAKDKVSVIYRIDPAREKGKLVFQLGTASPELAVEAAKVIADDVSGIDVNAG 191
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKR 191
CPK FS GGMGAALL TPD +IL L+ + P +S KIR+ + DT L
Sbjct: 192 CPKPFSTLGGMGAALLQTPDKLVSILEALVREVGQPWQIGISVKIRLLKDPKDTERLVTA 251
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKE 239
L A GI + VH RT RPR R+++ MI ++ + + + NG K
Sbjct: 252 LCATGITGLTVHCRTTPMRPREAAIRDQLPMIASICRSAGVACLMNGDVKS 302
>gi|198427128|ref|XP_002120497.1| PREDICTED: similar to tRNA-dihydrouridine synthase 2-like (hDUS2)
(Up-regulated in lung cancer) (URLC8) [Ciona
intestinalis]
Length = 482
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 134/252 (53%), Gaps = 67/252 (26%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN---------- 76
++Y NK+ILAPMVR+ LP RLLAL YGAD+VYSEE++DH+ ++ +R VN
Sbjct: 56 LDYKNKVILAPMVRIGRLPTRLLALKYGADIVYSEEIIDHRFIRCKRYVNVKIDTTESRK 115
Query: 77 ----------------------DLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPE 114
D L TIDF+ D +FRTC EK K++LQ+G
Sbjct: 116 WNYKLYIFASVPNLHGKHSLPLDALGTIDFILDTDSRPLFRTCKHEKEKVVLQLG----- 170
Query: 115 RALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC 174
GMGAAL++ P+ ILTTL++ LSIPV+C
Sbjct: 171 ------------------------------GMGAALITQPENVKEILTTLVNGLSIPVTC 200
Query: 175 KIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234
KIR+ T+ L + +E+ G+ A+ VHGR K ERPRH ++I+ +T+ +KIPVIAN
Sbjct: 201 KIRILPEIDKTLELVRIIESTGVAALAVHGRYKHERPRHPVHCDVIKAITETVKIPVIAN 260
Query: 235 GGSKEIVDYGGV 246
GGS I Y +
Sbjct: 261 GGSSNIACYDDI 272
>gi|315042544|ref|XP_003170648.1| hypothetical protein MGYG_06634 [Arthroderma gypseum CBS 118893]
gi|311344437|gb|EFR03640.1| hypothetical protein MGYG_06634 [Arthroderma gypseum CBS 118893]
Length = 420
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 135/231 (58%), Gaps = 17/231 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RL++L YGADLV+ E +D L+ R++N NT++F
Sbjct: 28 GVDYRGKVVLAPMVRSGELPSRLVSLRYGADLVWGPETIDRSLIGAVRRINPRNNTVEFT 87
Query: 86 --------DPLDG-SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
D D SV++R P REK K+I Q+GTA P+ A+EAAK + DV+ ID+N G
Sbjct: 88 RVPSHPAPDAKDKVSVIYRIDPAREKGKLIFQLGTASPDLAVEAAKVIADDVSGIDVNAG 147
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKR 191
CPK FS GGMGAALL TPD +IL L+ + P +S KIR+ + DT L
Sbjct: 148 CPKPFSTLGGMGAALLQTPDKLVSILEALVREVGQPWQIGISVKIRLLKDPKDTERLVTA 207
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKE 239
L A GI + +H RT RPR R+++ MI + + + V+ NG K
Sbjct: 208 LCATGITGLTIHCRTTPMRPREAAIRDQLPMIAAICRSAGVAVLMNGDVKS 258
>gi|327292817|ref|XP_003231106.1| tRNA dihydrouridine synthase [Trichophyton rubrum CBS 118892]
gi|326466736|gb|EGD92189.1| tRNA dihydrouridine synthase [Trichophyton rubrum CBS 118892]
Length = 414
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 135/231 (58%), Gaps = 17/231 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RL++L YGADLV+ E +D L+ R++N NT++F
Sbjct: 20 GVDYRGKIVLAPMVRSGELPSRLVSLKYGADLVWGPETIDRSLIGAVRRINPRNNTVEFT 79
Query: 86 --------DPLDG-SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
D D SV++R P REK K++ Q+GTA PE A+EAAK + DV+ ID+N G
Sbjct: 80 RVPSHPGPDAKDKVSVIYRIDPAREKGKLVFQLGTASPELAVEAAKVIADDVSGIDVNAG 139
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKR 191
CPK FS GGMGAALL TPD +IL L+ + P +S KIR+ + DT L
Sbjct: 140 CPKPFSTLGGMGAALLQTPDKLISILEALVREVGRPWQIGISVKIRLLKDPKDTERLVTA 199
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKE 239
L A GI + VH RT RPR R+++ MI ++ + + + NG K
Sbjct: 200 LCATGITGLTVHCRTTPMRPREAAIRDQLPMIASICRSAGVACLMNGDVKS 250
>gi|365758629|gb|EHN00463.1| Smm1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 380
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 136/223 (60%), Gaps = 13/223 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RL+AL +GADLV+S E+VD KL++ R+ N L T+D+V
Sbjct: 2 VTYAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIVDKKLLQCTRRENTTLQTVDYVV 61
Query: 87 PLDG-----SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P ++VFRT P+ E +++I QIG+A P A++AA KV +DV IDIN GCPK F
Sbjct: 62 PSKAQARPETLVFRTYPKLESSRLIFQIGSASPALAIQAALKVINDVNGIDINAGCPKHF 121
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACG 196
S+ GMG+ALL TPD C IL L+ N+ P+S KIR+ E DT+ L RL A G
Sbjct: 122 SIHSGMGSALLRTPDTLCLILQELVKNVGKPHGKPISVKIRLLDTEQDTLQLVTRLCATG 181
Query: 197 IIAIGVHGRTKAERPRHR---NRIEMIRTLTQHLKIPVIANGG 236
I + VH R R R + + I I + + + +I NG
Sbjct: 182 IANLTVHCRKTEMRNREQPITDYIAEIYEVCRANNVSLIVNGA 224
>gi|326475386|gb|EGD99395.1| tRNA dihydrouridine synthase [Trichophyton tonsurans CBS 112818]
Length = 419
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 134/231 (58%), Gaps = 17/231 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RL++L YGADLV+ E +D L+ R++N NT++F
Sbjct: 20 GVDYRGKVVLAPMVRSGELPSRLVSLKYGADLVWGPETIDRSLIGAVRRINPRNNTVEFT 79
Query: 86 --------DPLDG-SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
D D SV++R P REK K + Q+GTA PE A+EAAK + DV+ ID+N G
Sbjct: 80 RVPSHPGPDATDKVSVIYRIDPAREKGKFVFQLGTASPELAVEAAKVIADDVSGIDVNAG 139
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKR 191
CPK FS GGMGAALL TPD +IL L+ + P +S KIR+ + DT L
Sbjct: 140 CPKPFSTLGGMGAALLQTPDKLVSILEALVREVGQPWQIGISVKIRLLKDPRDTERLVTA 199
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKE 239
L A GI + VH RT RPR R+++ MI ++ + + + NG K
Sbjct: 200 LCATGITGLTVHCRTTPMRPREAAIRDQLPMIASICRSAGVACLMNGDVKS 250
>gi|336273868|ref|XP_003351688.1| hypothetical protein SMAC_00230 [Sordaria macrospora k-hell]
gi|380095967|emb|CCC06014.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 456
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 139/253 (54%), Gaps = 26/253 (10%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D ++ T R++N +++
Sbjct: 30 GVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETIDRAMIGTTRRINPRTGCVEWT 89
Query: 86 ---------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
+ D S+++R P RE + I QIGT+DP RA+E AK V DV+ ID+N G
Sbjct: 90 RIPTNNVKKELYDESIIYRVDPVREAGRHIFQIGTSDPSRAVECAKLVAADVSGIDVNAG 149
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKR 191
CPK FS GMGAALL TPD +IL L++ + I +S KIR+ A+T L +R
Sbjct: 150 CPKPFSTHAGMGAALLRTPDKLVSILEALVAEIKPAFDIGISVKIRLLETPAETETLVRR 209
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG-------GSKEIV 241
L A GI + +H RT RPR R ++ MI + + + NG G + +
Sbjct: 210 LCAAGITGLTIHCRTTPMRPRERAIRGQLRMIADVCHEYGVACVVNGDVEGRDHGLELMA 269
Query: 242 DYG--GVFSLNCA 252
+YG G CA
Sbjct: 270 EYGTDGAMIATCA 282
>gi|58268108|ref|XP_571210.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57227444|gb|AAW43903.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 491
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 136/220 (61%), Gaps = 5/220 (2%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
INY NK++LAPMVR +LP RLL+L YGA LV+S E+VD ++ ER V+ + I +
Sbjct: 104 INYKNKLVLAPMVRTGSLPMRLLSLYYGAGLVWSPEVVDRAIIGAERSVDPVTGVITYHK 163
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+F T P EK +I QIG+++PE A++AA+ V+ DVA ID+N GCPK FS GM
Sbjct: 164 --GQGPIFSTHPAEKPFLIFQIGSSNPELAVKAAQTVQQDVAGIDLNCGCPKPFSTHAGM 221
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLSTP++ +IL L+ ++ +P+SCKIR+ + T+ L R+ G+ + VH RT
Sbjct: 222 GAALLSTPELLLDILRALLDSIPLPISCKIRLLPTQPSTLYLASRILRTGVRNLTVHCRT 281
Query: 207 KAERPRHR---NRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+ RP R R+ I L + I VI NG + ++
Sbjct: 282 RQMRPGERALWERLSSIVELGKRRGISVICNGDGEGWSNW 321
>gi|321259143|ref|XP_003194292.1| hypothetical protein CGB_E3650W [Cryptococcus gattii WM276]
gi|317460763|gb|ADV22505.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 493
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 136/220 (61%), Gaps = 5/220 (2%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
INY NK++LAPMVR +LP RLL+L YGA LV+S E+VD ++ ER V+ + I +
Sbjct: 107 INYKNKLVLAPMVRTGSLPMRLLSLYYGAGLVWSPEVVDKAIIGAERSVDPVTGVITYHK 166
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+F T P EK +I QIG+++PE A++AA+ V+ DVA ID+N GCPK FS GM
Sbjct: 167 --GQGPIFSTHPAEKPFLIFQIGSSNPELAVKAAQTVQQDVAGIDLNCGCPKPFSTHAGM 224
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLSTP++ +IL L+ ++ +P+SCKIR+ + T+ L R+ GI + VH RT
Sbjct: 225 GAALLSTPELLLDILRALLDSIPLPISCKIRLLPTQPSTLYLASRIIRTGIRNLTVHCRT 284
Query: 207 KAERPRHR---NRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+ RP R R+ I L + I VI NG + ++
Sbjct: 285 RQMRPGERALWERLGSIVDLGKRRGISVICNGDGEGWSNW 324
>gi|58268106|ref|XP_571209.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57227443|gb|AAW43902.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 496
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 136/220 (61%), Gaps = 5/220 (2%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
INY NK++LAPMVR +LP RLL+L YGA LV+S E+VD ++ ER V+ + I +
Sbjct: 104 INYKNKLVLAPMVRTGSLPMRLLSLYYGAGLVWSPEVVDRAIIGAERSVDPVTGVITYHK 163
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+F T P EK +I QIG+++PE A++AA+ V+ DVA ID+N GCPK FS GM
Sbjct: 164 --GQGPIFSTHPAEKPFLIFQIGSSNPELAVKAAQTVQQDVAGIDLNCGCPKPFSTHAGM 221
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLSTP++ +IL L+ ++ +P+SCKIR+ + T+ L R+ G+ + VH RT
Sbjct: 222 GAALLSTPELLLDILRALLDSIPLPISCKIRLLPTQPSTLYLASRILRTGVRNLTVHCRT 281
Query: 207 KAERPRHR---NRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+ RP R R+ I L + I VI NG + ++
Sbjct: 282 RQMRPGERALWERLSSIVELGKRRGISVICNGDGEGWSNW 321
>gi|350296020|gb|EGZ76997.1| FMN-linked oxidoreductase [Neurospora tetrasperma FGSC 2509]
Length = 474
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 132/227 (58%), Gaps = 17/227 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D ++ T R+VN + I++
Sbjct: 35 GVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETIDRAMIGTTRRVNPRNHCIEWT 94
Query: 86 ---------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
+ D SV++R P RE + I QIGT+DP RA+E AK V DV+ ID+N G
Sbjct: 95 RVPTNNVKKELFDESVIYRIDPVREAGRHIFQIGTSDPARAVECAKLVAADVSGIDVNAG 154
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKR 191
CPK FS GMGAALL TP+ +IL L++ + I +S KIR+ A+T AL +R
Sbjct: 155 CPKPFSTHAGMGAALLRTPEKLVSILEALVAEIKPAFDIGISVKIRLLETPAETEALVRR 214
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L A GI + +H RT RPR R ++ MI + + + NG
Sbjct: 215 LCATGITGLTIHCRTTPMRPRERAIRGQLRMIADVCHEFGVACLVNG 261
>gi|85116943|ref|XP_965143.1| hypothetical protein NCU00950 [Neurospora crassa OR74A]
gi|28926947|gb|EAA35907.1| hypothetical protein NCU00950 [Neurospora crassa OR74A]
gi|38567022|emb|CAE76320.1| related to tRNA dihydrouridine synthase [Neurospora crassa]
Length = 475
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 132/227 (58%), Gaps = 17/227 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D ++ T R+VN + I++
Sbjct: 35 GVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETIDRAMIGTTRRVNPRNHCIEWT 94
Query: 86 ---------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
+ D SV++R P RE + I QIGT+DP RA+E AK V DV+ ID+N G
Sbjct: 95 RVPTNNVKKELFDESVIYRIDPVREAGRHIFQIGTSDPARAVECAKLVAADVSGIDVNAG 154
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKR 191
CPK FS GMGAALL TP+ +IL L++ + I +S KIR+ A+T AL +R
Sbjct: 155 CPKPFSTHAGMGAALLRTPEKLVSILEALVAEIKPAFDIGISVKIRLLETPAETEALVRR 214
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L A GI + +H RT RPR R ++ MI + + + NG
Sbjct: 215 LCATGITGLTIHCRTTPMRPRERAIRGQLRMIADVCHEFGVACLVNG 261
>gi|134112079|ref|XP_775575.1| hypothetical protein CNBE2890 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258234|gb|EAL20928.1| hypothetical protein CNBE2890 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 491
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 5/220 (2%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
INY NK++LAPMVR +LP RLL+L YGA LV+S E+VD ++ ER V+ I +
Sbjct: 104 INYKNKLVLAPMVRTGSLPMRLLSLYYGAGLVWSPEVVDRAIIGAERSVDPATGVITYHK 163
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+F T P EK +I QIG+++PE A++AA+ V+ DVA ID+N GCPK FS GM
Sbjct: 164 --GQGPIFSTHPAEKPFLIFQIGSSNPELAVKAAQTVQQDVAGIDLNCGCPKPFSTHAGM 221
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLSTP++ +IL L+ ++ +P+SCKIR+ + T+ L R+ G+ + VH RT
Sbjct: 222 GAALLSTPELLLDILRALLDSIPLPISCKIRLLPTQPSTLYLASRILRTGVRNLTVHCRT 281
Query: 207 KAERPRHR---NRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+ RP R R+ I L + I VI NG + ++
Sbjct: 282 RQMRPGERALWERLSSIVELGKRRGISVICNGDGEGWSNW 321
>gi|336463944|gb|EGO52184.1| hypothetical protein NEUTE1DRAFT_125714 [Neurospora tetrasperma
FGSC 2508]
Length = 472
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 132/227 (58%), Gaps = 17/227 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D ++ T R+VN + I++
Sbjct: 34 GVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETIDRAMIGTTRRVNPRNHCIEWT 93
Query: 86 ---------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
+ D SV++R P RE + I QIGT+DP RA+E AK V DV+ ID+N G
Sbjct: 94 RVPTNNVKKELFDESVIYRIDPVREAGRHIFQIGTSDPARAVECAKLVAADVSGIDVNAG 153
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKR 191
CPK FS GMGAALL TP+ +IL L++ + I +S KIR+ A+T AL +R
Sbjct: 154 CPKPFSTHAGMGAALLRTPEKLVSILEALVAEIKPAFDIGISVKIRLLETTAETEALVRR 213
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L A GI + +H RT RPR R ++ MI + + + NG
Sbjct: 214 LCATGITGLTIHCRTTPMRPRERAIRGQLRMIADVCHEFGVACLVNG 260
>gi|403361118|gb|EJY80256.1| tRNA-dihydrouridine synthase, putative [Oxytricha trifallax]
Length = 507
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 139/231 (60%), Gaps = 19/231 (8%)
Query: 24 QANINYSNKII----LAPMVRM-----------NTLPFRLLALDYGADLVYSEELVDHKL 68
+A+ ++SN++I LAPMVR+ N+LPFRL+A +YGAD V+SEE++D K
Sbjct: 7 KASQSFSNRMIGKISLAPMVRIVRYIFSITALQNSLPFRLMAKNYGADYVFSEEIIDRKF 66
Query: 69 VKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVA 128
R N+ LN ID+V D S+VFR EKN++ILQIGT + E A+ A + + D+
Sbjct: 67 QACTRYFNEELNCIDYVSTRDYSIVFRVREEEKNQLILQIGTNNAETAINAVETCQLDIC 126
Query: 129 AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186
+D+NMGCPK+FS GGMG+AL+ A +I+ +L+ + VSCKIRVF + T+
Sbjct: 127 GVDVNMGCPKKFSTGGGMGSALMRDLQNAKHIMKSLVDRFGEQMSVSCKIRVFEDHEKTM 186
Query: 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTL--TQHLKIPVIANG 235
++ G+ I +H RT AE R R I+ + T +KIP++ +G
Sbjct: 187 EYVLAMQEAGVHWISIHPRTAAEECRVAARWYEIKQIIDTGLIKIPILGSG 237
>gi|406866230|gb|EKD19270.1| dihydrouridine synthase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 412
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 131/214 (61%), Gaps = 16/214 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD ++ T R+VND L+TIDF
Sbjct: 14 GVDYRGKVVLAPMVRSGELPSRLLALHYGADLVWGPETVDRSMIGTTRRVNDSLSTIDFT 73
Query: 86 D-PLDGS----------VVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P GS ++FR P RE +++I QIGT+DPERA+ AA+ V DVA ID+N
Sbjct: 74 RLPSHGSKDPNKDKRESLIFRIHPEREGSRLIFQIGTSDPERAVAAARIVAADVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD C IL L+ + I +S KIR+ T L
Sbjct: 134 AGCPKPFSTSGGMGAALLQTPDKLCAILEALVKEIVPEFEIGISVKIRLLETPELTETLV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTL 223
++L A GI + VH RT RPR R E +R +
Sbjct: 194 RKLCATGITGLTVHCRTTPMRPRERAIREQLRMI 227
>gi|452842326|gb|EME44262.1| hypothetical protein DOTSEDRAFT_71931 [Dothistroma septosporum
NZE10]
Length = 455
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 139/253 (54%), Gaps = 24/253 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR P RL+AL YGADLV+ E +D L+ T R VN T+DF
Sbjct: 23 GVDYRGKIVLAPMVRSGECPSRLVALKYGADLVWGPETIDKALIGTTRHVNSATGTVDFT 82
Query: 86 --------DPLDG-----SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAID 131
+P S+++R P RE ++I QIGTA+P A+EAAK + V ID
Sbjct: 83 RISSNGAKNPALAPKQRESIIYRLHPEREGKRLIYQIGTANPSTAVEAAKLIAPHVVGID 142
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIA 187
+N GCPK FS +GGMGAALL TP C+IL L+ + P +S KIR+ +T A
Sbjct: 143 VNAGCPKPFSTSGGMGAALLKTPHKLCSILEALVQRVGKPFEIGISVKIRILDTSEETEA 202
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG---GSKEIV 241
L +RL A GI + +H RT RPR R++++M+ + + + NG G E +
Sbjct: 203 LVRRLVATGITGLTIHCRTTPMRPRERAIRDQLKMVVDICHEAGVACLMNGDVYGRDEAI 262
Query: 242 DYGGVFSLNCAFL 254
+ F + A +
Sbjct: 263 ELMKEFGADGAMI 275
>gi|403370398|gb|EJY85061.1| tRNA-dihydrouridine synthase, putative [Oxytricha trifallax]
Length = 503
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 139/231 (60%), Gaps = 19/231 (8%)
Query: 24 QANINYSNKII----LAPMVRM-----------NTLPFRLLALDYGADLVYSEELVDHKL 68
+A+ ++SN++I LAPMVR+ N+LPFRL+A +YGAD V+SEE++D K
Sbjct: 7 KASQSFSNRMIGKISLAPMVRIVRYIFSITALQNSLPFRLMAKNYGADYVFSEEIIDRKF 66
Query: 69 VKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVA 128
R N+ LN ID+V D S+VFR EKN++ILQIGT + E A+ A + + D+
Sbjct: 67 QACTRYFNEELNCIDYVSTRDYSIVFRVREEEKNQLILQIGTNNAETAINAVETCQLDIC 126
Query: 129 AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186
+D+NMGCPK+FS GGMG+AL+ A +I+ +L+ + VSCKIRVF + T+
Sbjct: 127 GVDVNMGCPKKFSTGGGMGSALMRDLQNAKHIMKSLVDRFGEQMSVSCKIRVFEDHEKTM 186
Query: 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTL--TQHLKIPVIANG 235
++ G+ I +H RT AE R R I+ + T +KIP++ +G
Sbjct: 187 EYVLAMQEAGVHWISIHPRTAAEECRVAARWYEIKQIIDTGLIKIPILGSG 237
>gi|342890172|gb|EGU89036.1| hypothetical protein FOXB_00448 [Fusarium oxysporum Fo5176]
Length = 420
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 139/229 (60%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD+ ++ T R+ ++ TI++
Sbjct: 14 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETVDYSMIGTSRRFDEDSKTIEWY 73
Query: 86 ---------DPLDG--SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D S+++R P EK+K+I QIGT+DP+RA+ AA+ V DVA ID+N
Sbjct: 74 RLSSHGQKDPPPDAKESIIYRMLPEAEKDKLIFQIGTSDPDRAVAAARLVAADVAGIDVN 133
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD C IL L+ N++ I +S KIR+ A+T AL
Sbjct: 134 AGCPKPFSTSGGMGAALLKTPDKLCAILEALVKNITPEFEIGISVKIRLLDTAAETEALV 193
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+RL A GI + +H RT RPR R ++ MI + + + NG
Sbjct: 194 RRLCATGITGLTIHCRTTPMRPRERAIRGQLRMIAEVCHEYGVACLMNG 242
>gi|344230927|gb|EGV62812.1| FMN-linked oxidoreductase [Candida tenuis ATCC 10573]
gi|344230928|gb|EGV62813.1| hypothetical protein CANTEDRAFT_115656 [Candida tenuis ATCC 10573]
Length = 417
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 140/226 (61%), Gaps = 11/226 (4%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+NY+ K +LAPMVR LP RLLAL +GADLV+S E+VD KL+ R N LNT +F +
Sbjct: 1 MNYTGKFVLAPMVRSGELPTRLLALRHGADLVWSPEIVDKKLLTCTRSYNSKLNTTEFRE 60
Query: 87 PLDGSVVFRTC-PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
P +G + T P E K+I Q+G++ PE A++A V +DV ID+N GCPK FS+ G
Sbjct: 61 P-NGRIALSTYKPSEAGKLIFQMGSSSPELAVKAGLMVINDVDGIDLNCGCPKNFSVHSG 119
Query: 146 MGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACGIIAIG 201
MGAALLSTP + C+IL +L+ + + P+SCKIR+ + T+ L +++ GI +
Sbjct: 120 MGAALLSTPTLLCDILKSLVQKVGDPNNKPISCKIRLLGDLPSTLELVEQICQTGIKNLT 179
Query: 202 VHGRTKA----ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+H RT++ E P H E+I+ +T+ I I NG + +D+
Sbjct: 180 LHCRTRSMRNREEPLHDYVPEIIK-ITKKYNISFIINGNLRNRLDF 224
>gi|378727797|gb|EHY54256.1| tRNA-dihydrouridine synthase 2 [Exophiala dermatitidis NIH/UT8656]
Length = 443
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 132/229 (57%), Gaps = 19/229 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD ++ T +K N I++
Sbjct: 23 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLVWGPETVDRSMIGTTQKTNPRTGCIEWT 82
Query: 86 D-----------PLDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P S+++R P+ E +K+I QIGTA P+ A++AA V V ID+N
Sbjct: 83 RISSNNNAKADVPAKESIIYRIDPKKESDKLIYQIGTASPDYAVQAATLVAPYVRGIDVN 142
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL TPD+ CNILT L++ + IP +S KIR+ T L
Sbjct: 143 AGCPKPFSTSGGMGAALLRTPDLLCNILTALVTKVGIPHEIGISVKIRLLETPELTSELV 202
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+L GI+ + +H RT RPR R+++ MI + + + + NG
Sbjct: 203 NKLCKTGIVGLTIHCRTTPMRPRERAIRDQLRMIGDICRSHGVACLMNG 251
>gi|425778427|gb|EKV16554.1| TRNA dihydrouridine synthase (Smm1), putative [Penicillium
digitatum PHI26]
gi|425784291|gb|EKV22079.1| TRNA dihydrouridine synthase (Smm1), putative [Penicillium
digitatum Pd1]
Length = 461
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 134/228 (58%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y NKI+LAPMVR LP RLLAL YGADLV+ E +D L+ ER+VN TI+F
Sbjct: 26 GVDYRNKIVLAPMVRSGELPSRLLALKYGADLVWGPETIDRSLIGAERRVNPRNGTIEFT 85
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P S+++R P REK ++I QIGTA+P A+ AA+ V DV+ ID+N
Sbjct: 86 RMPSNGGRSNKPTKESIIYRIDPAREKGRLIFQIGTANPRLAVAAARVVAADVSGIDVNS 145
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD+ +IL L+ + P +S KIR+ N +T AL
Sbjct: 146 GCPKPFSTSGGMGAALLRTPDLLVSILEYLVKEVGEPYNIGISVKIRILSNPEETEALVS 205
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL GI + VH RT RPR R+++ M+ + + + NG
Sbjct: 206 RLVKTGITGLTVHCRTTPMRPRERAIRDQLPMVARICHEAGVACVMNG 253
>gi|340923875|gb|EGS18778.1| tRNA-dihydrouridine synthase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 484
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 128/231 (55%), Gaps = 21/231 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RL+AL YGADLV+ E VD L+ +R++N N I++
Sbjct: 70 GVDYRGKVVLAPMVRSGELPMRLMALHYGADLVWGPETVDRSLIGAKRRINPRTNMIEYT 129
Query: 86 -------DPL------DGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAID 131
P SV++R P RE K++ Q+GTADP A+EAA+ V DVA ID
Sbjct: 130 RLPSHTHSPAAQYEGNQESVIYRLDPVREAGKLVFQLGTADPNLAVEAARFVAPDVAGID 189
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLI----SNLSIPVSCKIRVFHNEADTIA 187
+N GCPK FSL+GGMGAALL PD IL L I VS KIR+ T A
Sbjct: 190 VNAGCPKPFSLSGGMGAALLRDPDRLVAILEALTREIPPQFGIGVSVKIRLLETAEKTEA 249
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L +RL GI + VH RT RPR R ++ MI + + + + NG
Sbjct: 250 LVRRLVRTGITGLTVHCRTTPMRPREPAIRGQLRMIADVCREAGVACVVNG 300
>gi|302694715|ref|XP_003037036.1| hypothetical protein SCHCODRAFT_37482 [Schizophyllum commune H4-8]
gi|300110733|gb|EFJ02134.1| hypothetical protein SCHCODRAFT_37482, partial [Schizophyllum
commune H4-8]
Length = 284
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 131/222 (59%), Gaps = 9/222 (4%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
+Y N I LAPMVR LP RL AL +GA LV+ E+VD ++ ER V+ I +
Sbjct: 1 DYRNGIFLAPMVRSGALPTRLFALKHGASLVWGPEIVDKAILHAERVVDPDTGIISYNG- 59
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
+++ P EK +I QIG+ADPE A++AAK V HDV+ ID+N GCPK FS GMG
Sbjct: 60 -KSRSIYQCSPVEKPYLIYQIGSADPELAVQAAKVVMHDVSGIDLNCGCPKPFSTHAGMG 118
Query: 148 AALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
AALLSTPD+ C+IL L + I VSCKIR+ + +T+AL ++ GI A+ VH R
Sbjct: 119 AALLSTPDLLCSILRALREAMPPEIAVSCKIRLLSTQEETLALVGKIIETGISALTVHCR 178
Query: 206 TKAERPRHRNRIEMIRTLTQHLK-----IPVIANGGSKEIVD 242
T++ R R IE ++ + +K I V+ NG K D
Sbjct: 179 TRSMRDRDAAMIERLKEIVDFVKASGKDIAVVENGDCKGYED 220
>gi|255944963|ref|XP_002563249.1| Pc20g07240 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587984|emb|CAP86053.1| Pc20g07240 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 463
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 135/228 (59%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y NKI+LAPMVR LP RLLAL YGADLV+ E +D ++ ER+VN TI+F
Sbjct: 26 GVDYRNKIVLAPMVRSGELPSRLLALKYGADLVWGPETIDRSMIGAERRVNPRNGTIEFT 85
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P S+++R P REK ++I QIGTA+PE A++AA+ V DV+ ID+N
Sbjct: 86 RMPSNGGRPNKPTKESIIYRIDPAREKGRLIYQIGTANPELAVQAARVVAADVSGIDLNS 145
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD+ +IL L+ + P +S KIR+ +T AL
Sbjct: 146 GCPKPFSTSGGMGAALLRTPDLLVSILEALVKEVGQPFQIGISVKIRILSKPEETEALVS 205
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL GI + VH RT RPR R+++ M+ + + + NG
Sbjct: 206 RLVKTGITGLTVHCRTTPMRPRERAIRDQLPMVARICHEAGVACLMNG 253
>gi|296807698|ref|XP_002844234.1| tRNA-dihydrouridine synthase 2 [Arthroderma otae CBS 113480]
gi|238843717|gb|EEQ33379.1| tRNA-dihydrouridine synthase 2 [Arthroderma otae CBS 113480]
Length = 425
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 133/232 (57%), Gaps = 16/232 (6%)
Query: 24 QANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTID 83
Q ++Y KI+LAPMVR LP RL++L YGADLV+ E +D L+ R+VN T++
Sbjct: 26 QHGVDYRGKIVLAPMVRSGELPSRLVSLRYGADLVWGPETIDRSLIGAVRRVNPRNQTVE 85
Query: 84 FV------DPLDG--SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
F P SV++R P REK +++ Q+GTA PE A++AA+ V DV+ ID+N
Sbjct: 86 FTRIPSHPGPASDKVSVIYRIDPAREKGRLVFQLGTASPELAVQAARVVADDVSGIDVNA 145
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS GGMGAALL TPD +IL L+ + P +S KIR+ + T L
Sbjct: 146 GCPKPFSTLGGMGAALLQTPDRLVSILEALVREVGQPWQIGISVKIRILKDPEQTERLVT 205
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKE 239
L A GI + VH RT RPR R+++ MI ++ + + + NG K
Sbjct: 206 ALCATGITGLTVHCRTTPMRPREAAIRDQLPMIASICRSAGVACLMNGDVKS 257
>gi|449539857|gb|EMD30861.1| hypothetical protein CERSUDRAFT_163673 [Ceriporiopsis subvermispora
B]
Length = 476
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 129/215 (60%), Gaps = 9/215 (4%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
+Y N ++LAPMVR LP RL AL +GA LV+ E +D L+ T R V+ + +
Sbjct: 30 DYKNGVVLAPMVRSGALPTRLFALKHGASLVWGPETIDKALLHTTRTVDPDTGFVSYNG- 88
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
+F T P EK +I Q+G+ADPE A++AAK V DVA ID+N GCPK FS GGMG
Sbjct: 89 -KSKAIFTTHPIEKPYLIFQLGSADPEIAVQAAKMVMDDVAGIDLNCGCPKPFSTHGGMG 147
Query: 148 AALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
AALL+ PD+ C IL+ L L I VS KIR+ ++ DT+ L +R+ GI + VH R
Sbjct: 148 AALLTNPDLLCGILSALRQALPPHISVSAKIRLLPSQEDTLKLVERIVNTGISCLTVHCR 207
Query: 206 TKAERPRHRNRIEMIRTLTQHLK-----IPVIANG 235
T+ +R R +IE +R + Q ++ I VI NG
Sbjct: 208 TRNQRMREAAQIERLREIVQFVEGMGRGIAVIENG 242
>gi|67525019|ref|XP_660571.1| hypothetical protein AN2967.2 [Aspergillus nidulans FGSC A4]
gi|40744362|gb|EAA63538.1| hypothetical protein AN2967.2 [Aspergillus nidulans FGSC A4]
gi|259486087|tpe|CBF83649.1| TPA: tRNA dihydrouridine synthase (Smm1), putative (AFU_orthologue;
AFUA_3G08390) [Aspergillus nidulans FGSC A4]
Length = 437
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 129/227 (56%), Gaps = 17/227 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADL + E +D ++ T R+VN I+F
Sbjct: 14 GVDYRGKVVLAPMVRSGELPSRLLALKYGADLCWGPETIDRAMIGTTRRVNPRNGCIEFT 73
Query: 86 ---------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
D SV++R P REK K+I Q+GTA+PE A++A K V DV ID+N G
Sbjct: 74 RMPSNSVNKDDAKESVIYRLDPAREKGKLIFQMGTANPELAVQAGKLVAADVNGIDVNSG 133
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKR 191
CPK FS +GGMGAALL TPD +IL L+ + P +S KIR+ T +L R
Sbjct: 134 CPKPFSTSGGMGAALLRTPDKLVSILEALVKEVGEPYQIGISVKIRLLETPELTESLVSR 193
Query: 192 LEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L GI + +H RT RPR R+++ MI + + + I NG
Sbjct: 194 LVRTGITGLTIHCRTTPMRPRERAIRDQLRMIVSTCHNAGVACIMNG 240
>gi|154279318|ref|XP_001540472.1| hypothetical protein HCAG_04312 [Ajellomyces capsulatus NAm1]
gi|150412415|gb|EDN07802.1| hypothetical protein HCAG_04312 [Ajellomyces capsulatus NAm1]
Length = 461
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 135/230 (58%), Gaps = 20/230 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD-PLDG-- 90
+LAPMVR LP RLLAL YGADLV+ E +D L+ R++N + ++F P +G
Sbjct: 6 VLAPMVRSGELPSRLLALKYGADLVWGPETIDRALIGCTRRINPRNSMVEFTRLPSNGGR 65
Query: 91 --------SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFS 141
S+++R P RE K++ QIGTA P+ A++AAK + DVA ID+N GCPK FS
Sbjct: 66 ENNQAAKESIIYRLDPHRESGKLVFQIGTASPDLAVQAAKIIAADVAGIDVNAGCPKPFS 125
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGI 197
TGGMGAALL TPD +ILT L+ + P +S KIR+ + T L RL A GI
Sbjct: 126 TTGGMGAALLQTPDRLVSILTALVQQVGTPYQIGISVKIRLLADPERTRDLVTRLCATGI 185
Query: 198 IAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDYG 244
+ VH RT RPR R+++ MI ++ + + ++ N G E D+G
Sbjct: 186 TGLTVHCRTTPMRPRERAIRDQLPMIASICRAAGVAILVN-GDVESRDHG 234
>gi|258564268|ref|XP_002582879.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908386|gb|EEP82787.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 431
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 131/228 (57%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR P RL++L YGADLV+ E +D ++ +R++N + ++F
Sbjct: 17 GVDYRGKVVLAPMVRSGETPSRLVSLRYGADLVWGPETIDRSIIGAKRRINPRNSMVEFT 76
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P + +V+FR P RE+ K++ Q+GTA P A+EAAK V DV+ ID+N
Sbjct: 77 RMPSNGGRTDKPAEEAVIFRIDPIRERGKLVFQLGTATPSLAVEAAKIVAADVSGIDVNS 136
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL L+ + P +S KIR+ T +L
Sbjct: 137 GCPKPFSTSGGMGAALLQTPDRLVSILEALVEEVGKPYEIGISVKIRILAEPERTESLVT 196
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL GI + VH RT RPR R ++ MI ++ + + + NG
Sbjct: 197 RLCKTGITGLTVHCRTTPMRPREAAIREQLPMIASICRKAGVACVMNG 244
>gi|409052210|gb|EKM61686.1| hypothetical protein PHACADRAFT_248448 [Phanerochaete carnosa
HHB-10118-sp]
Length = 483
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 131/215 (60%), Gaps = 9/215 (4%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
+Y N ++LAPMVR LP RL AL +GA LV+ E+VD ++ ER V+ + ++
Sbjct: 35 DYRNGVMLAPMVRSGALPTRLFALKHGAKLVWGPEMVDKAILHAERVVDPTTGVVSYMG- 93
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
++ T P EK +I QIG+ADP+ A++AAKKV +DV+ ID+N GCPK FS GMG
Sbjct: 94 -VSKAMWTTHPIEKPFLIYQIGSADPDLAVQAAKKVMNDVSGIDLNCGCPKPFSTHAGMG 152
Query: 148 AALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
AALL+ PD+ C+ILT L NL I VS KIR+ + DT+ L +R+ G+ + VH R
Sbjct: 153 AALLTNPDLLCSILTALRENLPPEISVSAKIRLLPTQEDTLKLVERIVNTGVNCLTVHCR 212
Query: 206 TKAERPRHR---NRIEMIRTLTQHL--KIPVIANG 235
T+ RPR R R+E I + L + VI NG
Sbjct: 213 TRNMRPRERALVGRLEEIVKFVKGLGKDVAVIENG 247
>gi|409083859|gb|EKM84216.1| hypothetical protein AGABI1DRAFT_110775 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 450
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 154/272 (56%), Gaps = 26/272 (9%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
NY N + LAPMVR LP RL AL +GA +V+ E+VD ++ +R+V+ + + +
Sbjct: 27 NYKNGVFLAPMVRSGALPTRLFALKHGATMVWGPEIVDKAILHAKREVDPVTGVVSY--- 83
Query: 88 LDG--SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
+G ++ T P EK +I QIG+ADPE A++AA+ V DV+ ID+N GCPK FS G
Sbjct: 84 -NGVSRAIWTTHPVEKPHLIYQIGSADPELAVQAARTVMQDVSGIDLNCGCPKPFSTHSG 142
Query: 146 MGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
MGAALL+ PD+ C+ILT L + I VS KIR+ ++ DT+ L +R+ GI A+ VH
Sbjct: 143 MGAALLTNPDLLCSILTALRKAMPEQISVSAKIRLLPSQEDTLKLVERICGTGICALTVH 202
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLK-----IPVIANG------GSKEIVDYGGVFSLNCA 252
RT+ R + R IE ++ + Q ++ I V+ NG +K + + G S+ A
Sbjct: 203 CRTRNMRDKERAMIERLKEIVQFVEGLGKGIAVVENGDCQGWEDAKRVREVTGAHSVMIA 262
Query: 253 FLR-------NHYPVEKLPKTILYAHCKYKRF 277
+ P+ L KT+L ++ + R+
Sbjct: 263 RAGEANPTCFSDEPLLDLDKTLLPSYLRLSRY 294
>gi|242207487|ref|XP_002469597.1| predicted protein [Postia placenta Mad-698-R]
gi|220731401|gb|EED85246.1| predicted protein [Postia placenta Mad-698-R]
Length = 313
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 132/222 (59%), Gaps = 9/222 (4%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
+Y N ++LAPMVR LP RL AL +GA LV+ E VD ++ TER V+ I +V
Sbjct: 1 DYKNGVVLAPMVRSGALPTRLYALKHGASLVWGPETVDKAILHTERVVDPTTGVISYVG- 59
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
+F T P EK +I QIG+ADPE A++AA+ V DVA D+N GCPK FS GMG
Sbjct: 60 -KTKALFTTHPIEKPYLIYQIGSADPELAVQAARTVVQDVAGFDLNCGCPKPFSTHSGMG 118
Query: 148 AALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
AALLS PD+ C+ILT L + I +S KIR+ ++ DT+ L +R+ G+ A+ VH R
Sbjct: 119 AALLSNPDLLCSILTALREAMPPEISISAKIRLLPSQEDTLKLVERIVNTGVNALTVHCR 178
Query: 206 TKAERPRHRNRIEMIRTLTQHLK-----IPVIANGGSKEIVD 242
T+ R R + I+ +R + ++ + +I NG ++ D
Sbjct: 179 TRNMRKREKAHIDRLREIVDFVRGLGRDVALIENGDCEDYQD 220
>gi|186510839|ref|NP_001118800.1| tRNA-dihydrouridine synthase 2 [Arabidopsis thaliana]
gi|26452531|dbj|BAC43350.1| unknown protein [Arabidopsis thaliana]
gi|332645049|gb|AEE78570.1| tRNA-dihydrouridine synthase 2 [Arabidopsis thaliana]
Length = 290
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%)
Query: 81 TIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
T +FV+ +VVF TC EK++++ Q+GT+D RAL+A++ V +DVA IDINMGCPK F
Sbjct: 16 TSEFVEKGTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAF 75
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200
S+ GGMGAALLS P++ +IL TL NL +PV+CKIR+ + ADT+ L +R+E G+ A+
Sbjct: 76 SIQGGMGAALLSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPAL 135
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYG 244
VHGR A+RPR + + I + L IPVIANG E D+
Sbjct: 136 AVHGRKIADRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFS 179
>gi|448524121|ref|XP_003868927.1| Smm1 dihydrouridine synthase [Candida orthopsilosis Co 90-125]
gi|380353267|emb|CCG26023.1| Smm1 dihydrouridine synthase [Candida orthopsilosis]
Length = 459
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 134/238 (56%), Gaps = 22/238 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV- 85
++Y+N++ LAPMVR LP RLLAL Y DLV+S EL+D KL+ T R N L TID++
Sbjct: 6 VDYTNRVCLAPMVRSGELPMRLLALKYDCDLVWSPELIDKKLISTTRVENTKLGTIDYIA 65
Query: 86 -------------DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDI 132
+VVFR E K+ILQ+GT+DP+ A+EAA+KV DV ID+
Sbjct: 66 QNNHSNNNNNAKKQAHHETVVFRKHSDETGKLILQLGTSDPDLAVEAAQKVVQDVDGIDL 125
Query: 133 NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIAL 188
N GCPK FS GMGA LL TPD+ C+IL L++ + P+SCKIR+ N + L
Sbjct: 126 NCGCPKSFSTHSGMGAELLKTPDLLCSILNNLVTKVGKPNGKPISCKIRLLPNYEASRKL 185
Query: 189 CKRL-EACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+++ GI + +H RT R R N + + L + I VI NG + +D
Sbjct: 186 VEQICSTTGIANLTIHCRTPIMRNRQDPIWNYLPKLIPLIESYGISVILNGNFQSRLD 243
>gi|297792133|ref|XP_002863951.1| hypothetical protein ARALYDRAFT_917859 [Arabidopsis lyrata subsp.
lyrata]
gi|297309786|gb|EFH40210.1| hypothetical protein ARALYDRAFT_917859 [Arabidopsis lyrata subsp.
lyrata]
Length = 758
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 102/130 (78%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK++LAPMVR+ TL FR+LA +YGAD+ Y EE++DHKLVK ER++N T +FV+
Sbjct: 1 MDYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRINVAYGTTEFVE 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+VVF TC E+N+++ Q+GT+D RAL+AA+ V +DVA +DINMGCPK FS+ GGM
Sbjct: 61 KGTDNVVFSTCKEERNRVVFQMGTSDAVRALKAAEIVCNDVATVDINMGCPKAFSIQGGM 120
Query: 147 GAALLSTPDI 156
GAALLS P++
Sbjct: 121 GAALLSKPEL 130
>gi|443919159|gb|ELU39409.1| tRNA-dihydrouridine synthase 2 [Rhizoctonia solani AG-1 IA]
Length = 856
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 144/246 (58%), Gaps = 24/246 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y+N IILAPMV LP RLL+L YGA LV+S E++D ++ + R V++ I ++
Sbjct: 572 VDYTNGIILAPMV----LPTRLLSLKYGATLVWSPEIIDKAIIGSRRIVDERTGVITYMK 627
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P + +F T P E+ +I QIG++DP+ A +AA+ V DVA ID+N GCPK FS+ GM
Sbjct: 628 PNSNNPIFTTHPVERTHLIFQIGSSDPDLAAQAAQVVIQDVAGIDLNCGCPKPFSVHAGM 687
Query: 147 GAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRL-EACGIIAIGVH 203
GAALLSTPD+ C IL+ L S + ++P+S KIR+ + T AL R+ GI A+ VH
Sbjct: 688 GAALLSTPDLLCGILSKLRSTIPPNVPLSAKIRLLADAEATRALVSRIWREGGISALTVH 747
Query: 204 GRTKAERP-------RHRNRIEMIRTLTQHLK----IPVIANG------GSKEIVDYGGV 246
RT+ RP R R ++ I L K + VI NG ++EI D G
Sbjct: 748 CRTREMRPITPAVTSRMREAVDQIAELEAEDKTGRRVAVIYNGDCPGALAAQEIKDRTGA 807
Query: 247 FSLNCA 252
S+ A
Sbjct: 808 TSVMMA 813
>gi|219118875|ref|XP_002180204.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408461|gb|EEC48395.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 231
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 122/209 (58%), Gaps = 23/209 (11%)
Query: 35 LAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94
LAPMVR +T P R LAL YGAD VY+EELVD L T R N L TID+
Sbjct: 1 LAPMVRASTTPLRTLALSYGADWVYTEELVDRALTGTIRVENKELGTIDY---------- 50
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154
E+ K++ Q+G+ +P+ AL AA V DV AID+NMGCPK+FS++GGMG+ALLS P
Sbjct: 51 -----ERGKLVCQLGSGEPDLALAAALHVHQDVDAIDLNMGCPKKFSVSGGMGSALLSDP 105
Query: 155 DIACNILTTLISNLS---IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
+ AC I+ TL NLS IPVS KIR+ + + T+A L G AI VHGR ++
Sbjct: 106 ERACRIIRTLTENLSSKGIPVSAKIRLLKDVSSTVAFIAGLVEAGAKAIAVHGRQVSDDC 165
Query: 212 RHRNRIEMIRTLTQHL-----KIPVIANG 235
R M+R + + IP + NG
Sbjct: 166 TVPARWSMLREVIKEAVHRFPHIPFLLNG 194
>gi|426201083|gb|EKV51006.1| hypothetical protein AGABI2DRAFT_189317 [Agaricus bisporus var.
bisporus H97]
Length = 450
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 154/272 (56%), Gaps = 26/272 (9%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
+Y N + LAPMVR LP RL AL +GA +V+ E+VD ++ +R+V+ + + +
Sbjct: 27 DYKNGVFLAPMVRSGALPTRLFALKHGATMVWGPEIVDKAILHAKREVDPVTGVVSY--- 83
Query: 88 LDG--SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
+G ++ T P EK +I QIG+ADPE A++AA+ V DV+ ID+N GCPK FS G
Sbjct: 84 -NGVSRAIWTTHPVEKPHLIYQIGSADPELAVQAARTVMQDVSGIDLNCGCPKPFSTHAG 142
Query: 146 MGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
MGAALL+ PD+ C+ILT L + I VS KIR+ ++ DT+ L +R+ GI A+ VH
Sbjct: 143 MGAALLTNPDLLCSILTALRKAMPEQISVSAKIRLLPSQEDTLKLVERICGTGICALTVH 202
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLK-----IPVIANG------GSKEIVDYGGVFSLNCA 252
RT+ R + R IE ++ + Q ++ I V+ NG +K + + G S+ A
Sbjct: 203 CRTRNMRDKERAMIERLKEIVQFVEGLGKGIAVVENGDCQGWEDAKRVREVTGAHSVMIA 262
Query: 253 FLR-------NHYPVEKLPKTILYAHCKYKRF 277
+ P+ L KT+L ++ + R+
Sbjct: 263 RAGEANPTCFSDEPLLDLDKTLLPSYLRLSRY 294
>gi|190344922|gb|EDK36711.2| hypothetical protein PGUG_00809 [Meyerozyma guilliermondii ATCC
6260]
Length = 362
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/208 (45%), Positives = 128/208 (61%), Gaps = 12/208 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RL+AL YGADLV+S E+VD K+++ +R N L T DF+D
Sbjct: 2 VTYAGKLVLAPMVRSGELPTRLMALRYGADLVWSPEIVDKKIIQCKRVENVKLATTDFID 61
Query: 87 PLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
+ VVFRT P E+ ++I QIG+A+PE A+EAAK V DV ID+N GCPK FS G
Sbjct: 62 S-NNKVVFRTHPASERGRLIFQIGSANPELAVEAAKVVARDVDGIDLNCGCPKNFSTHSG 120
Query: 146 MGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFH--NEADTIALCKRLEACGIIA 199
MGA LL+ PD+ +IL L+ + IP+S KIR+ + +I L R+ G+
Sbjct: 121 MGAELLTNPDVLVSILKNLVEKIGNVYRIPISVKIRLLDATDPEPSIKLIDRICKTGVAN 180
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHL 227
+ +H RTK RNR IRT +
Sbjct: 181 LTLHCRTKP----MRNRQPPIRTFLPQI 204
>gi|323331765|gb|EGA73178.1| Smm1p [Saccharomyces cerevisiae AWRI796]
Length = 372
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 131/215 (60%), Gaps = 13/215 (6%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD-----GSV 92
MVR LP RL+AL +GADLV+S E++D KL++ RK N L T+D+V P ++
Sbjct: 1 MVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVVPSKVQTRPETL 60
Query: 93 VFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
VFRT P+ E +K+I QIG+A P A +AA KV +DV+ IDIN GCPK FS+ GMG+ALL
Sbjct: 61 VFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSIHSGMGSALL 120
Query: 152 STPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
TPD C IL L+ N+ S P+S KIR+ + DT+ L KRL A GI + VH R
Sbjct: 121 RTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLIKRLCATGITNLTVHCRKT 180
Query: 208 AERPRHR---NRIEMIRTLTQHLKIPVIANGGSKE 239
R R + + I I + Q + +I NG ++
Sbjct: 181 EMRNREQPITDYIAEIYEICQANNVSLIVNGAIRD 215
>gi|365763403|gb|EHN04932.1| Smm1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 372
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 131/215 (60%), Gaps = 13/215 (6%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD-----GSV 92
MVR LP RL+AL +GADLV+S E++D KL++ RK N L T+D+V P ++
Sbjct: 1 MVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCIRKENTALQTVDYVVPSKVQTRPETL 60
Query: 93 VFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
VFRT P+ E +K+I QIG+A P A +AA KV +DV+ IDIN GCPK FS+ GMG+ALL
Sbjct: 61 VFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSIHSGMGSALL 120
Query: 152 STPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
TPD C IL L+ N+ S P+S KIR+ + DT+ L KRL A GI + VH R
Sbjct: 121 RTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGITNLTVHCRKT 180
Query: 208 AERPRHR---NRIEMIRTLTQHLKIPVIANGGSKE 239
R R + + I I + Q + +I NG ++
Sbjct: 181 EMRNREQPITDYIAEIYEICQANNVSLIVNGAIRD 215
>gi|260944248|ref|XP_002616422.1| hypothetical protein CLUG_03663 [Clavispora lusitaniae ATCC 42720]
gi|238850071|gb|EEQ39535.1| hypothetical protein CLUG_03663 [Clavispora lusitaniae ATCC 42720]
Length = 393
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 134/222 (60%), Gaps = 14/222 (6%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP- 87
Y+ K+ LAPMVR LP RL+AL +GADLV+S E++D K+ R N L TIDF++
Sbjct: 23 YAGKLCLAPMVRSGELPTRLMALKFGADLVWSPEIIDKKIRTCSRVENKELETIDFIETG 82
Query: 88 ---LDGSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
S++FRT + E+ K+I Q+G+ADP+ A+E A KV DV ID+N GCPK FS
Sbjct: 83 KNGSKNSLIFRTNRKYEEGKLIFQLGSADPDIAVEGALKVIQDVDGIDLNCGCPKPFSTH 142
Query: 144 GGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEA--DTIALCKRLEACGI 197
GMGAALLS PD+ C+IL L+ + P+S KIR+ +++ ++AL RL + GI
Sbjct: 143 AGMGAALLSNPDLLCSILENLVEKVGKPYRKPISAKIRLLDSKSAEPSLALIDRLCSTGI 202
Query: 198 IAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGG 236
+ VH RT+ R R R+ + I LT + ++ NG
Sbjct: 203 TNLTVHCRTREMRNRESPVRDYVSQIYDLTNKRGVSLVINGA 244
>gi|320593632|gb|EFX06041.1| tRNA dihydrouridine synthase [Grosmannia clavigera kw1407]
Length = 441
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 132/223 (59%), Gaps = 16/223 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF- 84
++Y KI+LAPMVR LP RLLAL YGADLV+ E +D L+ T R+ N+ TI++
Sbjct: 24 GVDYRGKIVLAPMVRSGELPSRLLALQYGADLVWGPETIDKSLIGTTRRFNERTQTIEWS 83
Query: 85 ---------VDPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P + SV++R P E +++ Q+GT +P+ A AA+ V DVA IDIN
Sbjct: 84 RMPSSFSPHTTPKE-SVLYRIDPAHEGARLVFQMGTCNPDTAEAAARLVAADVAGIDINA 142
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALCK 190
GCPK FS GGMGAALL TPD+ C IL L++ ++ I +S KIR+ + A+T L +
Sbjct: 143 GCPKPFSTDGGMGAALLKTPDLLCAILERLVATITPAFGIGISVKIRLLADAAETKTLVR 202
Query: 191 RLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233
RL A GI + VH RT+ RPR R + +R + + +A
Sbjct: 203 RLVATGITGLTVHCRTRNMRPRERAIRDQLRMVADECRAAGVA 245
>gi|170085799|ref|XP_001874123.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651675|gb|EDR15915.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 308
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 156/274 (56%), Gaps = 30/274 (10%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
++ N + LAPMVR LP RL AL +GA LV++ E+VD ++ + R+V+ + I +
Sbjct: 27 DFKNGVFLAPMVRSGALPTRLFALKHGATLVWAPEIVDKAILHSTREVDPITGVISY--- 83
Query: 88 LDG--SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
+G +F T P EK +I QIG++DPE A++AAK V DV+ ID+N GCPK FS G
Sbjct: 84 -NGVSRAIFATHPVEKPYLIYQIGSSDPELAVQAAKMVMQDVSGIDLNCGCPKPFSTHAG 142
Query: 146 MGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
MGAALL+ PD+ C+ILT L + I V+ KIR+ ++ DT+ L +R+ GI A+ VH
Sbjct: 143 MGAALLTNPDLLCSILTALRREMPPEITVTAKIRLLPSQEDTLKLVERIVNTGISALTVH 202
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLK-----IPVIANG------GSKEIVDYGGVFSLNCA 252
RT+ R + R IE +R + + ++ I VI NG +K + + G S+ A
Sbjct: 203 CRTRNMREKDRAVIERLREIVEFVEGLGRGIAVIENGDCMSWEDAKRVRETTGAHSVMIA 262
Query: 253 ---------FLRNHYPVEKLPKTILYAHCKYKRF 277
F N P++ + KT++ A+ + R
Sbjct: 263 RGAEANPSCFSSN--PLKDIEKTLIPAYLRVVRI 294
>gi|146422997|ref|XP_001487432.1| hypothetical protein PGUG_00809 [Meyerozyma guilliermondii ATCC
6260]
Length = 362
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/208 (45%), Positives = 127/208 (61%), Gaps = 12/208 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RL+AL YGADLV+S E+VD K+++ +R N L T DF+D
Sbjct: 2 VTYAGKLVLAPMVRSGELPTRLMALRYGADLVWSPEIVDKKIIQCKRVENVKLATTDFID 61
Query: 87 PLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
+ VVFRT P E+ ++I QIG+A+PE A+EAAK V DV ID+N GCPK FS G
Sbjct: 62 S-NNKVVFRTHPASERGRLIFQIGSANPELAVEAAKVVARDVDGIDLNCGCPKNFSTHSG 120
Query: 146 MGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFH--NEADTIALCKRLEACGIIA 199
MGA LL+ PD+ IL L+ + IP+S KIR+ + +I L R+ G+
Sbjct: 121 MGAELLTNPDVLVLILKNLVEKIGNVYRIPISVKIRLLDATDPEPSIKLIDRICKTGVAN 180
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHL 227
+ +H RTK RNR IRT +
Sbjct: 181 LTLHCRTKP----MRNRQPPIRTFLPQI 204
>gi|403215306|emb|CCK69805.1| hypothetical protein KNAG_0D00530 [Kazachstania naganishii CBS
8797]
Length = 354
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 136/236 (57%), Gaps = 21/236 (8%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI-DFVDP 87
Y+ K+ APMVR LP RLLAL +G DLV+S E+VD K+++TER+V TI ++V P
Sbjct: 9 YAGKLCWAPMVRAGELPSRLLALQHGCDLVWSPEIVDKKILQTERRVVAGTPTIVEYVVP 68
Query: 88 LD---------GSVVFRTCPR---EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
G VFRT P E ++ Q+G+ D E A+ AA V DV+ ID+N G
Sbjct: 69 ATLRGKGRQGPGECVFRTAPSLEAESRGLVFQLGSCDAELAVRAALHVVKDVSGIDLNAG 128
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALCKR 191
CPK FS+ GMGAALLSTPD+ C IL L+ + IP+S KIR+ ++ T+ L +R
Sbjct: 129 CPKHFSVHSGMGAALLSTPDLLCEILEALVQRVGRPHDIPISVKIRLLPEQSATLLLVER 188
Query: 192 L-EACGIIAIGVHGRTKAER---PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
L + GI + VH RT+ R P R+ + + + Q + ++ NGG + DY
Sbjct: 189 LCKTTGISNLTVHCRTRDTRNSAPPDRSYVRQLHEVCQRHGVSLVLNGGIRSRGDY 244
>gi|392578416|gb|EIW71544.1| hypothetical protein TREMEDRAFT_42909 [Tremella mesenterica DSM
1558]
Length = 469
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 136/220 (61%), Gaps = 5/220 (2%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK++LAPMVR +LP RLL+L YGA LV+S E+VD ++ +ER V+ + I +
Sbjct: 51 LDYRNKLVLAPMVRTGSLPTRLLSLYYGAGLVWSPEVVDRAIIGSERIVDPVTGVITYTK 110
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+F T P EK +I QIG+++P A++AA+ V+ DV+ ID+N GCPK FS GM
Sbjct: 111 --GQGPIFSTHPMEKPYLIFQIGSSNPALAVKAAQTVQQDVSGIDLNCGCPKPFSTHSGM 168
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLSTPD+ +IL +L+ N+ +P+SCKIR+ + T+ L ++ GI + VH RT
Sbjct: 169 GAALLSTPDLLLDILRSLLQNIPLPISCKIRLLPTQPSTLVLAAQILRTGIRNLTVHCRT 228
Query: 207 KAERPRHR---NRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+ R R R+ + L + + +I NG + ++
Sbjct: 229 RNMRSGERAMWERLADVVNLGRRRDVSIICNGDGEGWSNW 268
>gi|213407250|ref|XP_002174396.1| tRNA dihydrouridine synthase Dus2 [Schizosaccharomyces japonicus
yFS275]
gi|212002443|gb|EEB08103.1| tRNA dihydrouridine synthase Dus2 [Schizosaccharomyces japonicus
yFS275]
Length = 462
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 129/225 (57%), Gaps = 16/225 (7%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLV---KTERKVNDLLNTIDFVDPLDGSVVF 94
MVR+ LP RLLAL YGADLV+ E+VD LV K +R VND TIDFV P V+F
Sbjct: 1 MVRIGELPTRLLALRYGADLVWGPEIVDKALVSGEKAQRVVNDHCQTIDFVKPPSNKVIF 60
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154
R P EK ++I Q+G+ +PE A+EAAK V +DV+AID+N GCPK FS+ GMGA LL
Sbjct: 61 RLHPLEKGRLIFQLGSCNPELAVEAAKLVVNDVSAIDLNCGCPKHFSVHAGMGAGLLKNL 120
Query: 155 DIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
D +IL L+ + P +SCKIR+ T+ + +RL GI AI VH RT R
Sbjct: 121 DRLESILRALVEQVGQPNNIGISCKIRLLDTHEATLDMVRRLCKTGIRAITVHCRTTPMR 180
Query: 211 ---PRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
P R + I + + ++ NG +KE+ + GV
Sbjct: 181 NTEPAIRTSLRDIAEICHSYHVSILVNGDVDNRKMAKELCEEYGV 225
>gi|367052673|ref|XP_003656715.1| hypothetical protein THITE_2121762 [Thielavia terrestris NRRL 8126]
gi|347003980|gb|AEO70379.1| hypothetical protein THITE_2121762 [Thielavia terrestris NRRL 8126]
Length = 497
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 134/236 (56%), Gaps = 27/236 (11%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VDH L+ R++N +++
Sbjct: 63 GVDYRGKLVLAPMVRSGELPSRLLALHYGADLVWGPETVDHSLIGASRRINPRTGMVEYT 122
Query: 86 D------------------PLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHD 126
PL+ SV++R P RE K+I Q+GT+DP RA+ AA+ V D
Sbjct: 123 RQPSHSYSASAGPDHDPSAPLE-SVIYRLDPVREAGKLIFQLGTSDPARAVAAARLVAPD 181
Query: 127 VAAIDINMGCPKQFSLTGGMGAALLSTPD----IACNILTTLISNLSIPVSCKIRVFHNE 182
VA ID+N GCPK FS++GGMGAALL TPD I + + + I VS KIR+
Sbjct: 182 VAGIDVNAGCPKPFSVSGGMGAALLRTPDKLAAILAALAREIPRDFGIAVSVKIRLLETA 241
Query: 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
A+T AL +RL A GI + VH RT RPR R ++ M+ L + + + NG
Sbjct: 242 AETEALVRRLVATGIAGLTVHCRTPPMRPREPAIRGQLRMVARLCREAGVACLMNG 297
>gi|388853779|emb|CCF52500.1| related to tRNA dihydrouridine synthase [Ustilago hordei]
Length = 797
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 132/229 (57%), Gaps = 16/229 (6%)
Query: 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLN 80
+A + + Y+N I LAPMVR+ TLP RLL+L+YGADLV+ E+VD ++ TER+VN
Sbjct: 67 SACTSTLQYTNGIFLAPMVRIGTLPTRLLSLEYGADLVWGPEIVDRAIIGTERRVNSQTG 126
Query: 81 TIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPK 138
I+F+ D +F P E+ ++ Q+G+A+P A EA K + DVAA+D+N GCPK
Sbjct: 127 VIEFIK--DNKQIFSCHPIERPYLVYQLGSANPGLAYEAIKTITQADDVAAVDLNCGCPK 184
Query: 139 QFSLTGGMGAALLSTPDIACNILTTL--ISNLSIPVSCKIRVFHNEADTIALCKRLEACG 196
FS GMGA +LSTP + CN L + + + V+CKIR+ + TI L R+ G
Sbjct: 185 PFSTHAGMGANMLSTPILLCNTLRAMRRAAPAHVAVTCKIRLLPTQEKTIELVDRIIRTG 244
Query: 197 IIA-IGVHGRTKAERPRHRNRIEMIRTLTQHLK---------IPVIANG 235
I + VH RTK RP + +R + H+ +PV+ NG
Sbjct: 245 AIECLTVHCRTKDMRPGEPALLHRLREIVDHVNTVSVEMGKTVPVVCNG 293
>gi|116181790|ref|XP_001220744.1| hypothetical protein CHGG_01523 [Chaetomium globosum CBS 148.51]
gi|88185820|gb|EAQ93288.1| hypothetical protein CHGG_01523 [Chaetomium globosum CBS 148.51]
Length = 655
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 136/235 (57%), Gaps = 25/235 (10%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VDH L+ R+VN + I++
Sbjct: 38 GVDYRGKLVLAPMVRSGELPSRLLALHYGADLVWGPETVDHSLIGAVRRVNPRTSMIEYT 97
Query: 86 -----------------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDV 127
+ + SV++R P REK K+I Q+GTAD RA+ AA+ V DV
Sbjct: 98 RQPSHSYSPANTHNENGNSVPESVIYRLDPTREKGKLIFQLGTADAARAVAAARFVAGDV 157
Query: 128 AAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEA 183
A ID+N GCPK FS++GGMGAALL TP+ IL L+ +++ + VS KIR+ A
Sbjct: 158 AGIDVNAGCPKPFSVSGGMGAALLRTPEKLAGILEALVRDITPAYGLGVSVKIRLLETAA 217
Query: 184 DTIALCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+T AL +RL GI + VH RT RPR R ++ M+R + + + NG
Sbjct: 218 ETEALVRRLVRTGITGLTVHCRTTPMRPRERAIRGQLRMVREVCHEAGVACLMNG 272
>gi|261205036|ref|XP_002627255.1| tRNA dihydrouridine synthase [Ajellomyces dermatitidis SLH14081]
gi|239592314|gb|EEQ74895.1| tRNA dihydrouridine synthase [Ajellomyces dermatitidis SLH14081]
gi|239611532|gb|EEQ88519.1| tRNA dihydrouridine synthase [Ajellomyces dermatitidis ER-3]
Length = 464
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 130/226 (57%), Gaps = 20/226 (8%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD-PLDG------ 90
MVR LP RLLAL YGADLV+ E +D L+ R++N + ++F P +G
Sbjct: 1 MVRSGELPSRLLALKYGADLVWGPETIDRALIGCTRRINPRNSMVEFTRLPSNGGRQNTP 60
Query: 91 ----SVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
SV++R P RE K+I QIGTA P A++AAK + DVA ID+N GCPK FS +GG
Sbjct: 61 NAKESVIYRIDPHRESGKLIFQIGTASPNLAVQAAKIIAADVAGIDVNAGCPKPFSTSGG 120
Query: 146 MGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGIIAIG 201
MGAALL TPD+ +ILT L+ + P +S KIR+ + T L RL A GI +
Sbjct: 121 MGAALLQTPDLLVSILTALVQQIGNPYQIGISVKIRLLADPERTRDLVTRLCATGITGLT 180
Query: 202 VHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDYG 244
VH RT RPR R ++ MI ++ + + ++ N G E D+G
Sbjct: 181 VHCRTTPMRPRERAIRAQLPMIASICRAAGVAILMN-GDVESRDHG 225
>gi|403411844|emb|CCL98544.1| predicted protein [Fibroporia radiculosa]
Length = 462
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 128/215 (59%), Gaps = 9/215 (4%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
+Y N ++LAPMVR LP RL +L +GA LV+ E VD ++ T+R V+ + + +V
Sbjct: 31 DYKNGVVLAPMVRSGALPTRLYSLKHGASLVWGPETVDKAILHTQRVVDPVTGVVSYVG- 89
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
+F T P EK +I QIG+ADPE A++AAK V DVA D+N GCPK FS GMG
Sbjct: 90 -KSKAIFTTHPIEKPYLIYQIGSADPELAVQAAKAVVQDVAGFDLNCGCPKPFSTHSGMG 148
Query: 148 AALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
AALL+ PD+ C+ILT L + I +S KIR+ ++ +T+ L +R+ G+ A+ VH R
Sbjct: 149 AALLTNPDLLCSILTALREAMPPEISISAKIRLLPSQEETLKLVERIVNTGVNALTVHCR 208
Query: 206 TKAERPRHRNRIEMIRTLTQHLK-----IPVIANG 235
T+ R R I +R + ++ I V+ NG
Sbjct: 209 TRNMRKREPALIGRLREIVDFVEGMGRGIAVLENG 243
>gi|440474544|gb|ELQ43281.1| tRNA-dihydrouridine synthase 2 [Magnaporthe oryzae Y34]
Length = 724
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 135/233 (57%), Gaps = 19/233 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR + LP RL+AL YGADLV+ E VD+ ++ T R++N N + +
Sbjct: 308 GVDYRGKIVLAPMVRSSELPSRLMALHYGADLVWGPETVDYSMIGTTRRLNPKTNVLQWT 367
Query: 86 ---------DPLDG--SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D + +F P E ++I Q+G+ DPERA+ AA+ V +DVA ID+N
Sbjct: 368 RLQNNGQKQAPPDAKENAMFTMHPELEGKRLIFQLGSGDPERAVAAARLVANDVAGIDLN 427
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS TGGMGAALL PD IL L+ ++ I +S KIR+ A+T AL
Sbjct: 428 AGCPKPFSTTGGMGAALLRDPDRLVAILEALVREVAPAAEIGISVKIRLLETAAETEALV 487
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKE 239
+RL GI A+ VH RT RPR R ++ M+ + + + + NG K+
Sbjct: 488 RRLVKTGITALTVHCRTTPMRPRERAIRGQLRMVADVCREAGVACLMNGDVKD 540
>gi|224013536|ref|XP_002296432.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968784|gb|EED87128.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 242
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 132/214 (61%), Gaps = 14/214 (6%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
+ N ILAPMVR +T P R LAL YGA LVY+EEL+D +V TER +N L TID+ P
Sbjct: 1 FCNSEILAPMVRASTTPLRTLALSYGASLVYTEELIDRSIVPTERIINTELGTIDYRTP- 59
Query: 89 DGSVVFRTC-PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
+ C +++K+I Q+GT + AL+AA KV +DV +D+NMGCPK+FS+TGGMG
Sbjct: 60 ------KHCYSAKQDKLIYQMGTGEGHLALDAANKVVNDVNGVDVNMGCPKKFSVTGGMG 113
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGVHGR 205
+ALLS AC+I++TL NL+ PVS KIR+ N T+ + L G AI +HGR
Sbjct: 114 SALLSDVKRACDIISTLRRNLNKPVSAKIRLLDPDNPKPTLDFVRALIKAGANAIAIHGR 173
Query: 206 TKAERP----RHRNRIEMIRTLTQHLKIPVIANG 235
+ R IE++R L Q +P+I NG
Sbjct: 174 IVGDESHTMARWETLIEVVRQLKQTESVPIIVNG 207
>gi|395335100|gb|EJF67476.1| FMN-linked oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 438
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 129/223 (57%), Gaps = 25/223 (11%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
+Y ++LAPMVR LP RL AL +GA LV+ E VD ++ T R VDP
Sbjct: 31 DYKGGLMLAPMVRSGALPTRLYALKHGAKLVWGPETVDKAILHTTR----------VVDP 80
Query: 88 LDGSVVFR-------TC-PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQ 139
+ G V + TC P EK +I QIG+ADPE A++AAK V+ DVA D+N GCPK
Sbjct: 81 VTGVVAYHGKSKPIFTCHPIEKPFLIYQIGSADPELAVQAAKMVQQDVAGFDLNCGCPKP 140
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGI 197
FS GMGAALL+TPD+ C+ILT L + I +S KIR+ ++ DT+ L +R+ GI
Sbjct: 141 FSTHSGMGAALLTTPDLLCSILTALREAMPPEISISAKIRLLPSQEDTLKLVERIVNTGI 200
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-----IPVIANG 235
+ VH RT+ R R + IE +R + ++ I VI NG
Sbjct: 201 SCLTVHCRTRNMRMREKAVIERLREIVDFVEKMGKGIAVIENG 243
>gi|389633959|ref|XP_003714632.1| tRNA dihydrouridine synthase [Magnaporthe oryzae 70-15]
gi|351646965|gb|EHA54825.1| tRNA dihydrouridine synthase [Magnaporthe oryzae 70-15]
Length = 441
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 135/233 (57%), Gaps = 19/233 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR + LP RL+AL YGADLV+ E VD+ ++ T R++N N + +
Sbjct: 25 GVDYRGKIVLAPMVRSSELPSRLMALHYGADLVWGPETVDYSMIGTTRRLNPKTNVLQWT 84
Query: 86 ---------DPLDG--SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D + +F P E ++I Q+G+ DPERA+ AA+ V +DVA ID+N
Sbjct: 85 RLQNNGQKQAPPDAKENAMFTMHPELEGKRLIFQLGSGDPERAVAAARLVANDVAGIDLN 144
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS TGGMGAALL PD IL L+ ++ I +S KIR+ A+T AL
Sbjct: 145 AGCPKPFSTTGGMGAALLRDPDRLVAILEALVREVAPAAEIGISVKIRLLETAAETEALV 204
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKE 239
+RL GI A+ VH RT RPR R ++ M+ + + + + NG K+
Sbjct: 205 RRLVKTGITALTVHCRTTPMRPRERAIRGQLRMVADVCREAGVACLMNGDVKD 257
>gi|71017671|ref|XP_759066.1| hypothetical protein UM02919.1 [Ustilago maydis 521]
gi|46098858|gb|EAK84091.1| hypothetical protein UM02919.1 [Ustilago maydis 521]
Length = 766
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 129/225 (57%), Gaps = 16/225 (7%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ + Y N I LAPMVR+ TLP RLL+L+YGADLV+ E+VD ++ ERKVN +++
Sbjct: 70 STLEYRNGIFLAPMVRIGTLPTRLLSLEYGADLVWGPEIVDRAIIGCERKVNPHTGVVEY 129
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSL 142
+ D +F P E+ ++ Q+G+ADP A +A K + DVAA+D+N GCPK FS
Sbjct: 130 LK--DHKQIFSCHPIERPYLVYQLGSADPHLAFQAIKTITQADDVAAVDLNCGCPKPFST 187
Query: 143 TGGMGAALLSTPDIACNILTTL--ISNLSIPVSCKIRVFHNEADTIALCKRLEACGII-A 199
GMGA +LSTP + CN L + + + V+CKIR+ + T+ L ++ G I
Sbjct: 188 HAGMGANMLSTPILLCNTLKAMRRAAPAHVAVTCKIRLLPTQEKTLELVDKIVRTGAIEC 247
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLK---------IPVIANG 235
+ VH RTK RPR + +R + H+ IPV+ NG
Sbjct: 248 LTVHCRTKDMRPREPALLHRLREIVDHVNSVATEMGRTIPVVCNG 292
>gi|440479753|gb|ELQ60501.1| tRNA-dihydrouridine synthase 2 [Magnaporthe oryzae P131]
Length = 428
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 135/233 (57%), Gaps = 19/233 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR + LP RL+AL YGADLV+ E VD+ ++ T R++N N + +
Sbjct: 12 GVDYRGKIVLAPMVRSSELPSRLMALHYGADLVWGPETVDYSMIGTTRRLNPKTNVLQWT 71
Query: 86 ---------DPLDG--SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D + +F P E ++I Q+G+ DPERA+ AA+ V +DVA ID+N
Sbjct: 72 RLQNNGQKQAPPDAKENAMFTMHPELEGKRLIFQLGSGDPERAVAAARLVANDVAGIDLN 131
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRVFHNEADTIALC 189
GCPK FS TGGMGAALL PD IL L+ ++ I +S KIR+ A+T AL
Sbjct: 132 AGCPKPFSTTGGMGAALLRDPDRLVAILEALVREVAPAAEIGISVKIRLLETAAETEALV 191
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKE 239
+RL GI A+ VH RT RPR R ++ M+ + + + + NG K+
Sbjct: 192 RRLVKTGITALTVHCRTTPMRPRERAIRGQLRMVADVCREAGVACLMNGDVKD 244
>gi|343429742|emb|CBQ73314.1| related to tRNA dihydrouridine synthase [Sporisorium reilianum
SRZ2]
Length = 772
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 134/233 (57%), Gaps = 16/233 (6%)
Query: 17 LDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN 76
LD A + + Y N I LAPMVR+ TLP RLL+L+YGADLV+ E+VD ++ +ER+VN
Sbjct: 67 LDPIPACTSTLQYQNGIFLAPMVRIGTLPTRLLSLEYGADLVWGPEIVDRAIIGSERRVN 126
Query: 77 DLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINM 134
++++ + +F P E+ ++ Q+G+ADP+ A +A K + DVAA+D+N
Sbjct: 127 PHTGVVEYLK--EHKQIFSCHPIERPYLVYQLGSADPDLAYQAIKTITQADDVAAVDLNC 184
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTL--ISNLSIPVSCKIRVFHNEADTIALCKRL 192
GCPK FS GMGA +LSTP + CN L + + + V+CKIR+ + T+ L ++
Sbjct: 185 GCPKPFSTHAGMGANMLSTPILLCNTLKAMRRAAPPHVAVTCKIRLLLTQQATLELVDKI 244
Query: 193 EACGIIA-IGVHGRTKAERPRHRNRIEMIRTLTQHL---------KIPVIANG 235
G I + VH RTK RPR + +R + H+ IPV+ NG
Sbjct: 245 VRTGAIECLTVHCRTKDMRPREPALLHRLREIVDHVNTVAAEMGRSIPVVCNG 297
>gi|294940939|ref|XP_002782932.1| Dus1p, putative [Perkinsus marinus ATCC 50983]
gi|239895114|gb|EER14728.1| Dus1p, putative [Perkinsus marinus ATCC 50983]
Length = 413
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 121/199 (60%), Gaps = 14/199 (7%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y + ILAPMVR TLP R L +YGADLVYSEE++D K+ ++R + NT D++
Sbjct: 18 YRDVEILAPMVRACTLPLRRLTANYGADLVYSEEIIDQKIYSSKRVWDPYFNTWDYISQR 77
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
D S+VF+T EK K+I Q+GT A +AA + DVA D+NMGCPK FS+ GGMG+
Sbjct: 78 DNSLVFQTAEEEKPKLIFQMGTNSGPGAQKAAMALLQDVAGFDVNMGCPKSFSIKGGMGS 137
Query: 149 ALLSTPDIACNILTTLISNL--SIPVSCKIRVFHN-----EADTIALCKR----LEAC-- 195
ALL P++A +IL TL + ++PV+CK+R+ + E + KR ++ C
Sbjct: 138 ALLKKPEVAVDILKTLRRTVPETMPVTCKVRLICDTQQPTEEELQDATKRTSEFIKGCSD 197
Query: 196 -GIIAIGVHGRTKAERPRH 213
G A+ +H RT RPR+
Sbjct: 198 AGACAVALHTRTIPMRPRN 216
>gi|336377031|gb|EGO05366.1| hypothetical protein SERLA73DRAFT_118923 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390073|gb|EGO31216.1| hypothetical protein SERLADRAFT_345267 [Serpula lacrymans var.
lacrymans S7.9]
Length = 433
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 129/215 (60%), Gaps = 9/215 (4%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
++ N I LAPMVR LP RL AL +GA LV+ E+VD ++ ER V+ + I +
Sbjct: 29 SFKNGIFLAPMVRSGALPTRLFALKHGASLVWGPEMVDKAILHAERVVDPITGVISYNG- 87
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
+F T P EK +I QIG+++PE A++AAK V DV+ +D+N GCPK FS GMG
Sbjct: 88 -KSRAMFTTHPIEKPYLIYQIGSSNPELAVQAAKTVMQDVSGVDLNCGCPKPFSTHSGMG 146
Query: 148 AALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
AALLS PD+ C+IL L + + I V+ KIR+ + DT+ L +R+ G+ AI +H R
Sbjct: 147 AALLSNPDLLCSILEALRAAMPPEITVTAKIRLLPTQEDTLKLVERIIDTGVSAITIHCR 206
Query: 206 TKAERPRHRNRIEMIRTLTQHLK-----IPVIANG 235
T+ R + + IE ++ + + ++ I V+ NG
Sbjct: 207 TRNMRQKEKALIERLKEIVEFVEGLGKGIAVVENG 241
>gi|392570604|gb|EIW63776.1| FMN-linked oxidoreductase [Trametes versicolor FP-101664 SS1]
Length = 427
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 129/215 (60%), Gaps = 9/215 (4%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
+Y N ++LAPMVR L RL +L +GA LV+ E VD ++ T R V+ + I +
Sbjct: 31 DYKNGLMLAPMVRSGALLTRLYSLKHGAKLVWGPETVDKAILHTTRVVDPVTGVISYHG- 89
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
VF T P EK +I QIG+ADP A+EAAK V +DV+ D+N GCPK FS GMG
Sbjct: 90 -KSKPVFTTHPIEKPFLIYQIGSADPALAVEAAKMVMNDVSGFDLNCGCPKPFSTHSGMG 148
Query: 148 AALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
AALL+ PD+ C+ILT L + I +S KIR+ ++ DT+ L +R+ G+ A+ VH R
Sbjct: 149 AALLTNPDLLCSILTALREAVPPEITISAKIRLLPSQEDTLKLVERIINTGVTALTVHCR 208
Query: 206 TKAERPRHRNRIEMIRTLTQHLK-----IPVIANG 235
T+ +R + + IE +R + Q ++ + VI NG
Sbjct: 209 TRNQRMKEKATIERLREIVQFVERMDKGVAVIENG 243
>gi|169845315|ref|XP_001829377.1| tRNA-dihydrouridine synthase 2 [Coprinopsis cinerea okayama7#130]
gi|116509442|gb|EAU92337.1| tRNA-dihydrouridine synthase 2 [Coprinopsis cinerea okayama7#130]
Length = 454
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 131/217 (60%), Gaps = 13/217 (5%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
++ N I LAPMVR LP RL AL +GA LV+ E+VD ++ +R+V+ + + +
Sbjct: 48 DFKNGIFLAPMVRSGALPTRLFALKHGATLVWGPEIVDKAILHAKREVDPVTGVVSY--- 104
Query: 88 LDG--SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
+G +F T P EK +I QIG+ADPE A++AAK V+ DV+ ID+N GCPK FS G
Sbjct: 105 -NGVSRAIFTTHPIEKPYLIYQIGSADPELAVQAAKTVQQDVSGIDLNCGCPKPFSTHAG 163
Query: 146 MGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
MGAALL+ PD+ +IL L + I V+ KIR+ ++ DT+ L +R+ G+ A+ VH
Sbjct: 164 MGAALLTNPDLLISILEALRKAMPPEITVTAKIRLLPSQEDTLKLVERIVNTGVSALTVH 223
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLK-----IPVIANG 235
RT+ R + R IE + + + ++ I VI NG
Sbjct: 224 CRTRNMREKDRAVIERLNEIVEFVEKMGKGIAVIENG 260
>gi|443898763|dbj|GAC76097.1| tRNA-dihydrouridine synthase [Pseudozyma antarctica T-34]
Length = 840
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 16/240 (6%)
Query: 17 LDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN 76
LD A + + + N I LAPMVR+ TLP RLL+L+YGADLV+ E+VD ++ ERKVN
Sbjct: 135 LDPIPACTSTLTFQNGIFLAPMVRIGTLPTRLLSLEYGADLVWGPEIVDRAIIGCERKVN 194
Query: 77 DLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINM 134
++++ + +F P E+ ++ Q+G+A+P+ A +A K + DVAA+D+N
Sbjct: 195 PATGVVEYLK--EHKQIFSCHPIERPYLVYQLGSANPDLAYQAIKIITQADDVAAVDLNC 252
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTL--ISNLSIPVSCKIRVFHNEADTIALCKRL 192
GCPK FS GMGA +LSTP + CN L + + + V+CKIR+ + TI L ++
Sbjct: 253 GCPKPFSTHAGMGANMLSTPVLLCNTLKAMRRAAPPHVAVTCKIRLLPTQEATIELVDKI 312
Query: 193 EACGII-AIGVHGRTKAERPRHRNRIEMIRTLTQHLK---------IPVIANGGSKEIVD 242
G I + VH RTK RPR + +R + H+ IPV+ NG + V+
Sbjct: 313 VRTGAIECLTVHCRTKDMRPREPALLHRLREIVDHVNTLAAQMGRTIPVVCNGDVWDAVN 372
>gi|324513342|gb|ADY45486.1| tRNA-dihydrouridine synthase 2-like protein [Ascaris suum]
Length = 158
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/140 (55%), Positives = 103/140 (73%), Gaps = 3/140 (2%)
Query: 17 LDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN 76
+ M + A+ Y++K ILAPMVR P RLLAL+YGADLVY+EE+VD +L+ + R VN
Sbjct: 1 MPMPPSCDASAFYTDKTILAPMVRAGRTPLRLLALEYGADLVYTEEIVDQRLLNSRRIVN 60
Query: 77 DLLNTIDFVDPLDGSVVFRTC-PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
D+L+T+D+V ++ VV R RE+NK +LQ+GT + +R AKKV D+AAID+NMG
Sbjct: 61 DVLHTVDYV--IEEDVVLRVATERERNKCVLQVGTNNGDRIAAVAKKVHDDIAAIDVNMG 118
Query: 136 CPKQFSLTGGMGAALLSTPD 155
CPK FSLTGGMGAALL+ PD
Sbjct: 119 CPKLFSLTGGMGAALLTQPD 138
>gi|448080820|ref|XP_004194734.1| Piso0_005247 [Millerozyma farinosa CBS 7064]
gi|359376156|emb|CCE86738.1| Piso0_005247 [Millerozyma farinosa CBS 7064]
Length = 457
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 137/220 (62%), Gaps = 11/220 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ ++ K+ LAPMVR LP RL+AL++GADLV+ E+VD K++K R ND L T+DF++
Sbjct: 84 VAFAGKLALAPMVRSGELPTRLMALEHGADLVWGPEVVDKKIIKCSRSQNDKLGTVDFLE 143
Query: 87 PLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
P +G V FRT P +EK ++I Q+G+ADP+ A +AA V DV ID+N GCPK FS G
Sbjct: 144 P-NGKVAFRTLPSKEKGRLIFQLGSADPDLAAQAAAVVAGDVDGIDLNCGCPKPFSTHAG 202
Query: 146 MGAALLSTPDIACNILTTLISNL----SIPVSCKIRVF--HNEADTIALCKRLEACGIIA 199
MGAALLS P+ +IL+ L+ ++ +IP+S KIR+ H+ ++ L +++ GI
Sbjct: 203 MGAALLSDPERLTSILSRLVKDVGKKFNIPISAKIRLLDEHDPQPSLDLIRKICDTGISN 262
Query: 200 IGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGG 236
+ +H RT++ R R R + I Q + + NG
Sbjct: 263 LTLHCRTRSMRNRESPIRQFLPEIIETVQSRNVSFMINGA 302
>gi|452824436|gb|EME31439.1| tRNA-dihydrouridine synthase 2 isoform 2 [Galdieria sulphuraria]
Length = 303
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 3/207 (1%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K +LAPMVR+ TLP RLLAL+YGADLVYSEE++D + N+ + +++
Sbjct: 10 KKVLAPMVRVGTLPMRLLALEYGADLVYSEEIIDRNFLDCYIHNNEKYSIKEWISNKTQL 69
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F TC +E++ +I+Q+GT++ A +AA+K+ ID+NMGCP +S GGMG+ALL
Sbjct: 70 CFFSTCNQERDHLIVQLGTSNGNCAWKAAEKIIPFCRGIDVNMGCPLLYSTKGGMGSALL 129
Query: 152 STPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
TP+IA +I+ TL NL V+ KIR+F DTI L G+ A+ +H R E
Sbjct: 130 KTPEIASDIIKTLRRNLPNEYSVTAKIRLFPVLQDTIDFVHMLANSGVDAVAIHARQVHE 189
Query: 210 RPRHRNRIEMIRTLTQH-LKIPVIANG 235
R + + + + H + +P++ NG
Sbjct: 190 RAKDKANWSQLAQIASHVVNVPLLGNG 216
>gi|452824437|gb|EME31440.1| tRNA-dihydrouridine synthase 2 isoform 1 [Galdieria sulphuraria]
Length = 323
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 3/207 (1%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K +LAPMVR+ TLP RLLAL+YGADLVYSEE++D + N+ + +++
Sbjct: 10 KKVLAPMVRVGTLPMRLLALEYGADLVYSEEIIDRNFLDCYIHNNEKYSIKEWISNKTQL 69
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F TC +E++ +I+Q+GT++ A +AA+K+ ID+NMGCP +S GGMG+ALL
Sbjct: 70 CFFSTCNQERDHLIVQLGTSNGNCAWKAAEKIIPFCRGIDVNMGCPLLYSTKGGMGSALL 129
Query: 152 STPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
TP+IA +I+ TL NL V+ KIR+F DTI L G+ A+ +H R E
Sbjct: 130 KTPEIASDIIKTLRRNLPNEYSVTAKIRLFPVLQDTIDFVHMLANSGVDAVAIHARQVHE 189
Query: 210 RPRHRNRIEMIRTLTQH-LKIPVIANG 235
R + + + + H + +P++ NG
Sbjct: 190 RAKDKANWSQLAQIASHVVNVPLLGNG 216
>gi|189203793|ref|XP_001938232.1| hypothetical protein PTRG_07900 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985331|gb|EDU50819.1| hypothetical protein PTRG_07900 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 434
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 131/231 (56%), Gaps = 21/231 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF- 84
++Y K++LAPM+R L + L +D ++ T R++N +T++F
Sbjct: 15 GVDYRVKVVLAPMLRSGELLLTAARAEVRRRLGMGPANIDRAMIGTTRRMNPHTSTLEFS 74
Query: 85 -----------VDPLD-GSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
+DP + SV++R P EK K+I QIGTA+PE A++AAK V DVA ID
Sbjct: 75 RLPTSKIKNPTLDPENRESVIYRIHPELEKGKLIYQIGTANPELAVQAAKMVAADVAGID 134
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIA 187
+N GCPK FS +GGMGAALL TPD+ CNILT+L+ + P +S KIR+ +T A
Sbjct: 135 VNSGCPKPFSTSGGMGAALLKTPDLLCNILTSLVEEVGKPYEIGISVKIRILDTPEETAA 194
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
L KRL GI + VH RT RPR R++++MI + + + + NG
Sbjct: 195 LVKRLVRTGITGLTVHCRTTPMRPRERAIRHQLKMIGEICREAGVACVMNG 245
>gi|388583466|gb|EIM23768.1| FMN-linked oxidoreductase [Wallemia sebi CBS 633.66]
Length = 333
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 123/204 (60%), Gaps = 6/204 (2%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97
MVR TLP RL++L+YGA LV++ E++D ++ + R N ID++ + V+ T
Sbjct: 1 MVRSGTLPTRLVSLEYGAKLVWTPEVIDKAIIGSHRVYNAKTGVIDYIKESENKPVWSTH 60
Query: 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157
E+ +I QIG++ PE A+EAAK +E DVA ID+N GCPK FS+ GMGAALL+ PD
Sbjct: 61 ALERPHVIYQIGSSTPELAVEAAKTIEQDVAGIDLNCGCPKHFSVHAGMGAALLTNPDNL 120
Query: 158 CNILTTLISNLS-IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR---H 213
IL L L +SCKIR+ + +TI L +R+ + I AI +H RTK+ RP
Sbjct: 121 VAILNALCEALPHKSISCKIRMLSTQEETIKLIERICSTPIKAITIHCRTKSMRPSEPAQ 180
Query: 214 RNRIEMIRTLTQHLK--IPVIANG 235
+R+ IR + L+ + V+ NG
Sbjct: 181 HDRLVEIREAIEKLRPDVAVVCNG 204
>gi|164655383|ref|XP_001728821.1| hypothetical protein MGL_3988 [Malassezia globosa CBS 7966]
gi|159102707|gb|EDP41607.1| hypothetical protein MGL_3988 [Malassezia globosa CBS 7966]
Length = 395
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 131/228 (57%), Gaps = 16/228 (7%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
+ + + LAPMVR +LP RLL+L+YGA LV+ E+VD +++TER V+ ++F
Sbjct: 40 FEHGLFLAPMVRTGSLPCRLLSLEYGASLVWGPEVVDRAIMETERDVDPTTGVVEFRK-- 97
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGM 146
VF T P E+ +I Q+G+A PE A EA + V DVA +D+N GCPK FS GGM
Sbjct: 98 GDKPVFSTHPIERPYLIYQLGSATPEFAAEAVRIVTQHDDVAGVDLNCGCPKPFSTLGGM 157
Query: 147 GAALLSTPDIACNILTTL--ISNLSIPVSCKIRVFHNEADTIALCKRL-EACGIIAIGVH 203
G+ LLSTPD+ C+I+ + + + VSCKIR+ + +T +L +++ A I + +H
Sbjct: 158 GSNLLSTPDLLCDIIKAMRRAAPPHVSVSCKIRLLPTQEETFSLVEKIVRARAIRVLTIH 217
Query: 204 GRTKAERPRHRNRIEMIRTLTQHL---------KIPVIANGGSKEIVD 242
RTK RPR +E R + +H+ + V+ NG + D
Sbjct: 218 CRTKPMRPREAALLERFRAVAEHVAKIAKETEQDVTVVCNGDCFSVAD 265
>gi|392597859|gb|EIW87181.1| FMN-linked oxidoreductase [Coniophora puteana RWD-64-598 SS2]
Length = 411
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 120/205 (58%), Gaps = 9/205 (4%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97
MVR LP RLLAL YGA LV+ E+VD ++ ER V+ + I + +F T
Sbjct: 1 MVRSGALPTRLLALKYGASLVWGPEMVDKAILHAERVVDPITGVISYNG--KSRAMFTTH 58
Query: 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157
P EK +I QIG+ADPE A++AA+KV DV+ ID+N GCPK FS GMGAALL+ PD+
Sbjct: 59 PIEKPYLIYQIGSADPELAVQAARKVMQDVSGIDLNCGCPKPFSTHAGMGAALLTNPDLL 118
Query: 158 CNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN 215
C+ILT L + I V+ KIR+ + +T L +R+ G+ AI +H RT+ RPR +
Sbjct: 119 CSILTALRQAMPPEITVTAKIRLLPTQEETKKLVERIINTGVSAITIHCRTRPMRPREKA 178
Query: 216 RIEMIRTLTQHLK-----IPVIANG 235
E + + + I V+ NG
Sbjct: 179 LQERLNEIVDFVNGLGKDIAVVENG 203
>gi|323335734|gb|EGA77015.1| Smm1p [Saccharomyces cerevisiae Vin13]
Length = 361
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 125/204 (61%), Gaps = 13/204 (6%)
Query: 49 LALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD-----GSVVFRTCPR-EKN 102
+AL +GADLV+S E++D KL++ RK N L T+D+V P ++VFRT P+ E +
Sbjct: 1 MALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVVPSKVQTRPETLVFRTYPKLESS 60
Query: 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILT 162
K+I QIG+A P A +AA KV +DV+ IDIN GCPK FS+ GMG+ALL TPD C IL
Sbjct: 61 KLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSIHSGMGSALLRTPDTLCLILK 120
Query: 163 TLISNL----SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR---N 215
L+ N+ S P+S KIR+ + + DT+ L KRL A GI + VH R R R + +
Sbjct: 121 ELVKNVGNPHSKPISVKIRLLNTKQDTLQLVKRLCATGITNLTVHCRKTEMRNREQPITD 180
Query: 216 RIEMIRTLTQHLKIPVIANGGSKE 239
I I + Q + +I NG ++
Sbjct: 181 YIAEIYEICQANNVSLIVNGAIRD 204
>gi|295672502|ref|XP_002796797.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282169|gb|EEH37735.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 475
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 130/229 (56%), Gaps = 23/229 (10%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF- 84
++Y KI+LAPMVR LP RLLAL YGADL + +K +ND +++
Sbjct: 30 GVDYRGKIVLAPMVRSGELPSRLLALKYGADLSPNRLHPPNK----SAHLNDRIHSPPLQ 85
Query: 85 ----------VDPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P S+++R P RE+ K+I QIGTA P A+EAAK + DVA ID+N
Sbjct: 86 RRPPKPNQTKPAPAQESIIYRLDPHRERGKLIFQIGTASPILAVEAAKIIAPDVAGIDVN 145
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALC 189
GCPK FS +GGMGAALL PD+ +ILT L++ + P +S KIR+ + T L
Sbjct: 146 AGCPKPFSTSGGMGAALLQKPDLLVSILTALVTEVGAPHQISISVKIRLLSDPERTRDLV 205
Query: 190 KRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL A GI + VH RT RPR R+++ MI ++ ++ + ++ NG
Sbjct: 206 TRLCATGITGLTVHCRTTPMRPRERAIRDQLPMIASICRNAGVAILMNG 254
>gi|353235131|emb|CCA67148.1| related to tRNA dihydrouridine synthase [Piriformospora indica DSM
11827]
Length = 506
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 130/222 (58%), Gaps = 19/222 (8%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
+ + I+LAPMVR TLP RLLAL YGA LV+ E+VD ++ +R V++ + F
Sbjct: 40 FKDSIVLAPMVRSGTLPTRLLALKYGASLVWGPEIVDRAMLHAKRVVDERTGVVSF---- 95
Query: 89 DG--SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+G S ++ T P E+ +I QIG+A+P A+ +A V DV+ +++N GCPK FS +GGM
Sbjct: 96 EGISSSIWSTHPAERPYLIYQIGSANPSLAVASALMVSRDVSGVELNCGCPKPFSTSGGM 155
Query: 147 GAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GAA+L TPD+ C IL +L +L I VSCKIRV + T+ L +++ GI + VH
Sbjct: 156 GAAMLDTPDLLCEILMSLRKSLPAHISVSCKIRVLPDPKKTLDLVEKIVKTGINCLTVHC 215
Query: 205 RTKAER-------PRHRNRIEMIRTLTQHLKIP----VIANG 235
RT+ R R + +E IR + P ++ANG
Sbjct: 216 RTRNMRKGEPAIPTRLKPIVEHIRAMRDEQGRPYDVAILANG 257
>gi|448085310|ref|XP_004195826.1| Piso0_005247 [Millerozyma farinosa CBS 7064]
gi|359377248|emb|CCE85631.1| Piso0_005247 [Millerozyma farinosa CBS 7064]
Length = 400
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 134/220 (60%), Gaps = 11/220 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ ++ K++LAPMVR LP RL+AL++GADLV+ E+VD K++K R ND L TIDF++
Sbjct: 27 VAFAGKLVLAPMVRSGELPTRLMALEHGADLVWGPEVVDKKIIKCSRSQNDKLGTIDFLE 86
Query: 87 PLDGSVVFRTC-PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
P +G V FRT RE+ ++I Q+G+ADP+ A +AA V DV ID+N GCPK FS G
Sbjct: 87 P-NGKVAFRTLRSREQGRLIFQLGSADPDLAAQAAAVVAGDVDGIDLNCGCPKPFSTHAG 145
Query: 146 MGAALLSTPDIACNILTTLI----SNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIA 199
MGAALLS P+ +IL+ L+ IP+S KIR+ H+ ++ L +++ G+
Sbjct: 146 MGAALLSDPERLTSILSRLVKGVGQKFGIPISAKIRLLDEHDPEPSLDLIRKICDTGVSN 205
Query: 200 IGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGG 236
+ +H RT++ R R R + I Q + + NG
Sbjct: 206 LTLHCRTRSMRNRESPIRQFLPEIIQTVQSRNVSFMINGA 245
>gi|402222447|gb|EJU02513.1| FMN-linked oxidoreductase [Dacryopinax sp. DJM-731 SS1]
Length = 418
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 128/214 (59%), Gaps = 7/214 (3%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y I LAPMVR T+P RLLAL+ GA+LV++ E VD ++ ER+V+ I ++
Sbjct: 38 VHYGKGIHLAPMVRSGTMPTRLLALEAGAELVWTPETVDRAIIGCERRVDPKTGVITYIK 97
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
V P E+ ++I Q+G+A+P+ A EAAK + DVA ID+N GCPK FS+ GM
Sbjct: 98 --SHKPVLTLHPVERPRLIFQLGSANPDLAAEAAKIIYQDVAGIDLNCGCPKHFSVHAGM 155
Query: 147 GAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGII-AIGVH 203
GA LL PD C IL + +++ +PVSCKIR+ ++ DT++L +++ G I + VH
Sbjct: 156 GAGLLLDPDKLCAILQAIRASIPPEVPVSCKIRMLPSQEDTLSLVRQIADTGTINCLTVH 215
Query: 204 GRTKAERPRHRNRIEMIRTLTQHL--KIPVIANG 235
RT R R ++ + Q + K+ V+ NG
Sbjct: 216 CRTPPMRDREPAMKHRLKDIVQSVGKKVVVVENG 249
>gi|389742012|gb|EIM83199.1| FMN-linked oxidoreductase [Stereum hirsutum FP-91666 SS1]
Length = 535
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 127/216 (58%), Gaps = 10/216 (4%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
+Y + I+LAPMVR LP RL AL +GA LV+ E+VD ++ +R V+ I +
Sbjct: 30 DYKHGIMLAPMVRSGALPTRLFALKHGAKLVWGPEIVDKAILHAKRVVDPTTGVISYEG- 88
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
+F P EK +I QIG++ P A++AA+ V DV+ ID+N GCPK FS GMG
Sbjct: 89 -KSKAMFTCHPLEKPFLIYQIGSSTPSLAVQAARVVMQDVSGIDLNCGCPKPFSTHSGMG 147
Query: 148 AALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
AALLSTPD+ C+ILT L + I VSCKIR+ + +T+ L +R+ G+ + +H R
Sbjct: 148 AALLSTPDLLCDILTALRREMPAEISVSCKIRLLGTKEETLELVRRIVGTGVNCLTIHCR 207
Query: 206 TKAERPRHRNRIEMIRTLTQHLK------IPVIANG 235
T++ R + R E +R + + ++ + ++ NG
Sbjct: 208 TRSMRNKERALQERLREVVEFVRNELKSDVAIVENG 243
>gi|303316025|ref|XP_003068017.1| Dihydrouridine synthase family protein [Coccidioides posadasii C735
delta SOWgp]
gi|240107693|gb|EER25872.1| Dihydrouridine synthase family protein [Coccidioides posadasii C735
delta SOWgp]
Length = 453
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 131/228 (57%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR P R+++L YGADLV+ E VD ++ +R++N + I++
Sbjct: 17 GVDYRGKIVLAPMVRSGETPSRIVSLKYGADLVWGPETVDRAIIGAKRRINPRNSMIEYT 76
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P SV++R P RE+ K+I Q+GTA+P A+EAAK V DV+ ID+N
Sbjct: 77 RIPSNGGQPNKPAQESVLYRIDPVRERGKLIFQLGTANPSLAVEAAKVVAADVSGIDVNS 136
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL L+ + P +S KIR+ T AL
Sbjct: 137 GCPKPFSTSGGMGAALLQTPDRLVSILEALVEEIGKPYEIGISVKIRLLAEPERTEALVT 196
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
RL GI + VH RT RPR R ++ MI ++ + + + NG
Sbjct: 197 RLCRTGITGLTVHCRTTPMRPREAAIREQLPMIASICRKAGVACLMNG 244
>gi|392867573|gb|EAS29187.2| tRNA dihydrouridine synthase [Coccidioides immitis RS]
Length = 461
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 131/228 (57%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR P R+++L YGADLV+ E VD ++ +R++N + I++
Sbjct: 25 GVDYRGKIVLAPMVRSGETPSRIVSLKYGADLVWGPETVDRAIIGAKRRINPRNSMIEYT 84
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P SV++R P RE+ K+I Q+GTA+P A+EAAK V DV+ ID+N
Sbjct: 85 RIPSNGGQPNKPAQESVLYRIDPVRERGKLIFQLGTANPSLAVEAAKVVAADVSGIDVNS 144
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL L+ + P +S KIR+ T AL
Sbjct: 145 GCPKPFSTSGGMGAALLQTPDRLVSILEALVEEIGKPYEIGISVKIRLLAEPERTEALVT 204
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
R+ GI + VH RT RPR R ++ MI ++ + + + NG
Sbjct: 205 RVCRTGITGLTVHCRTTPMRPREAAIREQLPMIASICRKAGVACLMNG 252
>gi|119177354|ref|XP_001240465.1| hypothetical protein CIMG_07628 [Coccidioides immitis RS]
Length = 453
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 131/228 (57%), Gaps = 18/228 (7%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR P R+++L YGADLV+ E VD ++ +R++N + I++
Sbjct: 17 GVDYRGKIVLAPMVRSGETPSRIVSLKYGADLVWGPETVDRAIIGAKRRINPRNSMIEYT 76
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P SV++R P RE+ K+I Q+GTA+P A+EAAK V DV+ ID+N
Sbjct: 77 RIPSNGGQPNKPAQESVLYRIDPVRERGKLIFQLGTANPSLAVEAAKVVAADVSGIDVNS 136
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL L+ + P +S KIR+ T AL
Sbjct: 137 GCPKPFSTSGGMGAALLQTPDRLVSILEALVEEIGKPYEIGISVKIRLLAEPERTEALVT 196
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
R+ GI + VH RT RPR R ++ MI ++ + + + NG
Sbjct: 197 RVCRTGITGLTVHCRTTPMRPREAAIREQLPMIASICRKAGVACLMNG 244
>gi|393213303|gb|EJC98800.1| FMN-linked oxidoreductase [Fomitiporia mediterranea MF3/22]
Length = 441
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 125/215 (58%), Gaps = 30/215 (13%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
++ N ++LAPMVR +LP RL AL +GA LV+S E+VD ++ ER ++
Sbjct: 29 SFKNGVMLAPMVRSGSLPTRLFALKHGATLVWSPEVVDKAILHAERVID----------- 77
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
+K +I Q+G+ADPE A++AA+ V+ D++ ID+N GCPK FS GMG
Sbjct: 78 ------------QKPYLIYQVGSADPELAVKAAQTVQQDISGIDLNCGCPKPFSTHAGMG 125
Query: 148 AALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
AALL+ PD+ C+IL L + + I VS KIR+ + DT+ L +R+ GI + VH R
Sbjct: 126 AALLTNPDLLCSILKALRAAMPPEISVSAKIRLLPTQEDTLKLVERIVDTGITNLTVHCR 185
Query: 206 TKAERPRHRNRIEMIRTLTQHLK-----IPVIANG 235
T+ RPR + I +R + + ++ + VI NG
Sbjct: 186 TRNMRPREQALIGRMREIVEFVEKMGKGVSVIENG 220
>gi|209880479|ref|XP_002141679.1| dihydrouridine synthase family protein [Cryptosporidium muris RN66]
gi|209557285|gb|EEA07330.1| dihydrouridine synthase family protein [Cryptosporidium muris RN66]
Length = 330
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 120/208 (57%), Gaps = 6/208 (2%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K IL PMV LPFRL LDYGAD+V++EE++D ++KT R N+ ++ D + S
Sbjct: 6 KWILGPMVNFTNLPFRLTCLDYGADIVFTEEIMDFNILKTNRIFNEKSGIYEYTDDRN-S 64
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
V+F T E K+I QIGT AL+A + + +D A DINMGCPK +++ GMG+ALL
Sbjct: 65 VIFSTNQNENGKVIFQIGTFCSVNALKACEHIINDFCAFDINMGCPKLYNIRRGMGSALL 124
Query: 152 STPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P+IA +IL L NL ++CKIR+ + T+ + C I I VH RT E+
Sbjct: 125 LKPEIAEDILKCLNRNLPKCSITCKIRLLDDFKKTLDFIRLCSNCNISGITVHARTPKEK 184
Query: 211 PR---HRNRIEMIRTLTQHLKIPVIANG 235
H + +I++ IPVIANG
Sbjct: 185 YDVFPHWDIFPLIKSELSSC-IPVIANG 211
>gi|367018936|ref|XP_003658753.1| hypothetical protein MYCTH_2294926 [Myceliophthora thermophila ATCC
42464]
gi|347006020|gb|AEO53508.1| hypothetical protein MYCTH_2294926 [Myceliophthora thermophila ATCC
42464]
Length = 505
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 133/246 (54%), Gaps = 36/246 (14%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VDH L+ R+VN I++
Sbjct: 59 GVDYRGKLVLAPMVRSGELPSRLLALHYGADLVWGPETVDHSLIGATRRVNPRTGMIEYT 118
Query: 86 -------DPLDG---------------------SVVFRTCP-REKNKIILQIGTADPERA 116
P + SV++R P REK K++ Q+GT+D ERA
Sbjct: 119 RQPSHAYSPANSAARNNSNDSNDNDNNEAGAAESVIYRLDPEREKGKLVFQLGTSDAERA 178
Query: 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPV 172
+ AA+ V DVA ID+N GCPK FS+ GGMGAALL P+ IL L +++ I +
Sbjct: 179 VAAARVVAADVAGIDVNAGCPKPFSMLGGMGAALLRAPEKLAGILEALARDITPAFGIGI 238
Query: 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKI 229
S KIR+ A+T AL +RL GI + VH RT RPR R ++ MIR + +
Sbjct: 239 SVKIRLLETPAETEALVRRLVRTGITGLTVHCRTTPMRPRERAVRGQLAMIRRVCHEAGV 298
Query: 230 PVIANG 235
+ NG
Sbjct: 299 ACLMNG 304
>gi|397564143|gb|EJK44084.1| hypothetical protein THAOC_37409 [Thalassiosira oceanica]
Length = 491
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 118/207 (57%), Gaps = 24/207 (11%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
+ A+ + ILAPMVR +T P R LAL +GA L ++EE++D + R VN L T+
Sbjct: 55 DAADALFRGSEILAPMVRASTTPLRTLALAHGASLTFTEEIIDRAVRPAVRAVNSELGTV 114
Query: 83 DFVDPLD---------------------GSVVFRTCPR-EKNKIILQIGTADPERALEAA 120
D+ PL GSV+ R P E+N+++ Q+GT + ALEAA
Sbjct: 115 DYRVPLSSYSAKVQRRMAADTDNPDSKRGSVLLRIDPAVERNRLVYQVGTGESALALEAA 174
Query: 121 KKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180
KV DV+ ID+NMGCPK+FS+ GGMG+ALL AC+I++TL N++ PVS KIR+
Sbjct: 175 SKVVGDVSGIDVNMGCPKKFSVGGGMGSALLGDERRACDIISTLRRNIAKPVSAKIRLLD 234
Query: 181 NE--ADTIALCKRLEACGIIAIGVHGR 205
+ T+ + L G A+ +HGR
Sbjct: 235 PDRPRPTLDFVRALINAGANAVTIHGR 261
>gi|320032373|gb|EFW14326.1| tRNA dihydrouridine synthase [Coccidioides posadasii str. Silveira]
Length = 310
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 127/218 (58%), Gaps = 18/218 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y KI+LAPMVR P R+++L YGADLV+ E VD ++ +R++N + I++
Sbjct: 25 GVDYRGKIVLAPMVRSGETPSRIVSLKYGADLVWGPETVDRAIIGAKRRINPRNSMIEYT 84
Query: 86 ----------DPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
P SV++R P RE+ K+I Q+GTA+P A+EAAK V DV+ ID+N
Sbjct: 85 RIPSNGGQPNKPAQESVLYRIDPVRERGKLIFQLGTANPSLAVEAAKVVAADVSGIDVNS 144
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCK 190
GCPK FS +GGMGAALL TPD +IL L+ + P +S KIR+ T AL
Sbjct: 145 GCPKPFSTSGGMGAALLQTPDRLVSILEALVEEIGKPYEIGISVKIRLLAEPERTEALVT 204
Query: 191 RLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQ 225
RL GI + VH RT RPR R ++ MI ++ +
Sbjct: 205 RLCRTGITGLTVHCRTTPMRPREAAIREQLPMIASICR 242
>gi|123975618|ref|XP_001330358.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121896476|gb|EAY01626.1| hypothetical protein TVAG_292590 [Trichomonas vaginalis G3]
Length = 333
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 133/246 (54%), Gaps = 8/246 (3%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y KI PMVR + LPFRL+ L+ GAD VY ++ + N+ T+ F P
Sbjct: 9 YRGKIFAGPMVRASNLPFRLMCLENGADGVYGPATSVDSILASHYDENEDPYTMYFGWPK 68
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+ V F T P+EK K+I QI T D +A++AA V AID+N GCP+ F+ + G G+
Sbjct: 69 NPHVHFHTDPKEKGKLIFQILTNDASKAVQAASVVVKFADAIDLNCGCPESFATSRGTGS 128
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
+L+S P+I ++++ L N ++P+S K R+ HN ++I E G AI VHGR K
Sbjct: 129 SLMSEPEIVADVVSALRRNYNVPISVKHRIHHNIEESIQFAVACENAGASAIAVHGRLKE 188
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFS--LNCAFLRNHYPV 260
++ + + ++ + HL + I NGG +KE+++ G S ++ A L+N
Sbjct: 189 QKNKGSVAYDNMKLVFDHLHVAKIGNGGVKNREMAKEMMEKTGCESVIISSAALKNPTIF 248
Query: 261 EKLPKT 266
P+T
Sbjct: 249 SGHPET 254
>gi|401838763|gb|EJT42226.1| YNR014W-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 457
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 100/155 (64%), Gaps = 18/155 (11%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RL+AL +GADLV+S E+VD KL++ R+ N L T+D+V
Sbjct: 300 VTYAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIVDKKLLQCTRRENTTLQTVDYVV 359
Query: 87 PLDG-----SVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P ++VFRT P+ E +++I QIG+A P A++AA KV +DV IDIN GCPK F
Sbjct: 360 PSKAQARPETLVFRTYPKLESSRLIFQIGSASPALAIQAALKVINDVNGIDINAGCPKHF 419
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175
S+ GMG+ALL TP A +P SCK
Sbjct: 420 SIHSGMGSALLRTPGHA------------VPSSCK 442
>gi|296088965|emb|CBI38530.3| unnamed protein product [Vitis vinifera]
Length = 160
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 91/128 (71%)
Query: 108 IGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167
+GT++ ERAL AA+ V DVAA+DINMGCPK FS++GGMGAALL+ P++ +ILT L N
Sbjct: 1 MGTSNAERALTAAQIVCKDVAAVDINMGCPKSFSISGGMGAALLTRPELIHDILTILKRN 60
Query: 168 LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL 227
L IPV+CKIR+ + +T+ L +++E G+ A+ VHGR A+RPR + I + L
Sbjct: 61 LDIPVTCKIRLLKSSQETVELAQQIEKTGVAALAVHGRRIADRPRDPAKWNEIADVVAAL 120
Query: 228 KIPVIANG 235
IPVIANG
Sbjct: 121 SIPVIANG 128
>gi|345568300|gb|EGX51197.1| hypothetical protein AOL_s00054g573 [Arthrobotrys oligospora ATCC
24927]
Length = 453
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 114/201 (56%), Gaps = 10/201 (4%)
Query: 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLL 79
A+A K++LAPMVR L RLL+L YGAD+V+ E +D L+ ER N
Sbjct: 30 ADAPAVPATKYGKVVLAPMVRSGQLATRLLSLKYGADIVWGPETIDKSLIGCERVENPKT 89
Query: 80 NTIDFVDPLDGSVVFRTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
+D+V ++FR CP REK+K I Q+GTA P+ A+ AAK V DV+ ID+N GCPK
Sbjct: 90 GCVDYVR---TGLIFRACPSREKSKFIFQMGTAAPDTAVAAAKIVAQDVSGIDVNSGCPK 146
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNL------SIPVSCKIRVFHNEADTIALCKRL 192
FS GMGAALL +ILT L+ N+ ++P+S KIR+ +T AL L
Sbjct: 147 PFSTHAGMGAALLKDIPRLLSILTALVENVGLSTPYALPISVKIRLLPTIEETHALVTSL 206
Query: 193 EACGIIAIGVHGRTKAERPRH 213
GI + +H RT RPR
Sbjct: 207 CKTGISKLTLHCRTPPMRPRE 227
>gi|401885914|gb|EJT49993.1| hypothetical protein A1Q1_00834 [Trichosporon asahii var. asahii
CBS 2479]
gi|406697411|gb|EKD00671.1| hypothetical protein A1Q2_05031 [Trichosporon asahii var. asahii
CBS 8904]
Length = 469
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 120/212 (56%), Gaps = 30/212 (14%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y++K++LAPMVR TLP RLL+L YGA LV+S E+VD ++ +R V+
Sbjct: 70 LEYNSKLVLAPMVRTGTLPTRLLSLYYGAGLVWSPEIVDRAIIGAKRVVD---------- 119
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+I Q+GT++P A AAK V DV+ D+N GCPK FS GM
Sbjct: 120 -----------------LIFQLGTSNPRLAAAAAKVVAQDVSGFDLNCGCPKPFSTHAGM 162
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALLSTPD+ +IL LI++L +PVSCKIR+ +T L ++ GI + VH RT
Sbjct: 163 GAALLSTPDLLLDILRRLIADLPLPVSCKIRILQTRPETQLLAAQILRTGIRNLSVHART 222
Query: 207 KAERPRH---RNRIEMIRTLTQHLKIPVIANG 235
+ RPR R++ + L + + VI NG
Sbjct: 223 RDMRPREAAIWERVKAVVDLGKERGVNVILNG 254
>gi|195392596|ref|XP_002054943.1| GJ19061 [Drosophila virilis]
gi|194149453|gb|EDW65144.1| GJ19061 [Drosophila virilis]
Length = 109
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 82/103 (79%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK+ILAPMVR+ TLP RLLAL+ GAD+VY+EELVD KL+K+ R++N L+T+DFVD
Sbjct: 7 LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDLKLIKSIRRLNPALSTVDFVD 66
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA 129
P DG++VFRTC E +K++ Q+G +D ER L K V++DV A
Sbjct: 67 PSDGTIVFRTCALESSKVVYQLGISDAERGLAVGKLVQYDVLA 109
>gi|403363281|gb|EJY81383.1| tRNA-dihydrouridine synthase [Oxytricha trifallax]
Length = 438
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 22/217 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K I+APMV + LP+R+L Y A L Y+ ++E +
Sbjct: 46 SPKFIVAPMVDQSELPYRMLTRKYKAQLCYTPMFHGRMFSESEGYRKEFF---------- 95
Query: 90 GSVVFRTCPREKNK-IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
CP +++ + +Q DP+ L+AA+ VE+D A+DIN GCP+ + G G+
Sbjct: 96 -------CPHPEDRPLSVQFCANDPQVLLKAARYVENDCDAVDINFGCPQGIARKGKYGS 148
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
LL +I +++TTL NL +PV+CKIR NE +T+ L K +E CG + VHGRT+
Sbjct: 149 FLLEKTEIIRSLVTTLAQNLKVPVTCKIRCLPNEEETMKLAKMIEECGCAMLVVHGRTR- 207
Query: 209 ERPRHRN---RIEMIRTLTQHLKIPVIANGGSKEIVD 242
E + R ++I+ + Q L+IPVIANGG D
Sbjct: 208 EHNKQRTGPANWQIIKKIKQSLRIPVIANGGMATFED 244
>gi|302795500|ref|XP_002979513.1| hypothetical protein SELMODRAFT_444257 [Selaginella moellendorffii]
gi|300152761|gb|EFJ19402.1| hypothetical protein SELMODRAFT_444257 [Selaginella moellendorffii]
Length = 378
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 118/213 (55%), Gaps = 18/213 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K ++APMV + LPFR+L YGA Y+ ++ +L +RK +
Sbjct: 53 KFMVAPMVDQSELPFRMLCRKYGATGAYTP-MLHARLFSEDRKYRN-------------- 97
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F TCP E +++Q +P+ L AAK VE IDIN+GCP++ + G GA L+
Sbjct: 98 YEFTTCP-EDRPLLIQFCANNPDTLLAAAKLVEPFCDYIDINLGCPQRIAKRGNYGAFLM 156
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
+ ++T L+SNL +PVSCKIR+F + DTI+ K LE+ G + VHGRT+ ++
Sbjct: 157 DDLPLVQALVTKLVSNLDVPVSCKIRMFPSLDDTISYAKMLESSGCSLLAVHGRTREQKC 216
Query: 212 RH--RNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
R E+IR + Q L+IPV+ANG + + D
Sbjct: 217 SRTVRADWEVIRAVKQALRIPVLANGNIRSLED 249
>gi|302792084|ref|XP_002977808.1| hypothetical protein SELMODRAFT_443602 [Selaginella moellendorffii]
gi|300154511|gb|EFJ21146.1| hypothetical protein SELMODRAFT_443602 [Selaginella moellendorffii]
Length = 378
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 118/213 (55%), Gaps = 18/213 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K ++APMV + LPFR+L YGA Y+ ++ +L +RK +
Sbjct: 53 KFMVAPMVDQSELPFRMLCRKYGATGAYTP-MLHARLFSEDRKYRN-------------- 97
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F TCP E +++Q +P+ L AAK VE IDIN+GCP++ + G GA L+
Sbjct: 98 YEFTTCP-EDRPLLIQFCANNPDTLLAAAKLVEPFCDYIDINLGCPQRIAKRGNYGAFLM 156
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
+ ++T L+SNL +PVSCKIR+F + DTI+ K LE+ G + VHGRT+ ++
Sbjct: 157 DDLPLVQALVTKLVSNLDVPVSCKIRMFPSLDDTISYAKMLESSGCSLLAVHGRTREQKC 216
Query: 212 RH--RNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
R E+IR + Q L+IPV+ANG + + D
Sbjct: 217 SRTVRADWEVIRAVKQALRIPVLANGNIRWLED 249
>gi|330800078|ref|XP_003288066.1| hypothetical protein DICPUDRAFT_152274 [Dictyostelium purpureum]
gi|325081890|gb|EGC35390.1| hypothetical protein DICPUDRAFT_152274 [Dictyostelium purpureum]
Length = 402
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 113/215 (52%), Gaps = 22/215 (10%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV--KTERKVNDLLNTID 83
N+ S K+++APMV L FR+L YGADLVY+ V KT RK N
Sbjct: 45 NVLKSPKLVVAPMVDHTYLAFRMLTRKYGADLVYTPMFHSKNFVTCKTYRKDN------- 97
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
F TCP E +++Q DPE ++AAK VE AID+N+GCP+Q +
Sbjct: 98 ----------FTTCP-EDRPLVVQFCGNDPEWVVKAAKLVEDRCDAIDLNLGCPQQIARR 146
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
G G+ LL P I I+ L N+ +P+ CKIR+ + DTI L L+ G + VH
Sbjct: 147 GNYGSFLLDKPHIILPIVRELHKNIKVPIFCKIRLLPDLKDTIKLALDLQEAGCQLLTVH 206
Query: 204 GRTKAERPRHRNR--IEMIRTLTQHLKIPVIANGG 236
GRTK ++ ++ + IR + + L IPVIANG
Sbjct: 207 GRTKEQKGQYSGHANWDAIRQIKEVLHIPVIANGS 241
>gi|356514252|ref|XP_003525820.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Glycine max]
Length = 542
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 22/229 (9%)
Query: 20 ANANQANINYSN----KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKV 75
+ A QA +++ + I+APMV + LPFR+L YGA Y+ L +TE+
Sbjct: 196 SRAEQAWAHWTKLGRPRFIVAPMVDNSELPFRMLCRKYGAQGAYTPMLHSRIFTETEKYR 255
Query: 76 NDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
N+ F TC +E + +Q DP+ LEAA+KVE +DIN+G
Sbjct: 256 NE---------------EFTTC-KEDRPLFVQFCANDPDVLLEAARKVERFCDYVDINLG 299
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195
CP++ + G GA L+ + +++ L NL +PVSCKIR+F N DT+ + LE
Sbjct: 300 CPQRIAKRGYYGAFLMDNLPLVKSLVEKLAVNLQVPVSCKIRLFPNLEDTLKYARMLEEA 359
Query: 196 GIIAIGVHGRTKAERPRHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
G + + VHGRT+ E+ + R + IR + ++IPV+ANG + I D
Sbjct: 360 GCMLLAVHGRTRDEKDGKKFRADWKAIRAVKNAVRIPVLANGNIRHIDD 408
>gi|15240243|ref|NP_201523.1| tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana]
gi|10177609|dbj|BAB10956.1| unnamed protein product [Arabidopsis thaliana]
gi|15146316|gb|AAK83641.1| AT5g67220/K21H1_18 [Arabidopsis thaliana]
gi|20908082|gb|AAM26724.1| AT5g67220/K21H1_18 [Arabidopsis thaliana]
gi|332010932|gb|AED98315.1| tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana]
Length = 423
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 113/213 (53%), Gaps = 18/213 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K I+APMV + LPFRLL YGA Y+ L +TE+ N
Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQ-------------- 134
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F TC +E + +Q DP+ LEAAK+VE +DIN+GCP++ + G GA L+
Sbjct: 135 -EFTTC-KEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLM 192
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
+ +++ L NL++PVSCKIR+F N DT+ K LE G + VHGRT+ E+
Sbjct: 193 DNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKD 252
Query: 212 RHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+ R + I+ + ++IPV+ANG + I D
Sbjct: 253 GKKFRADWSAIKEVKNAMRIPVLANGNVRCIED 285
>gi|302414270|ref|XP_003004967.1| tRNA-dihydrouridine synthase [Verticillium albo-atrum VaMs.102]
gi|261356036|gb|EEY18464.1| tRNA-dihydrouridine synthase [Verticillium albo-atrum VaMs.102]
Length = 244
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 86/136 (63%), Gaps = 12/136 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
++Y K++LAPMVR LP RLLAL YGADLV+ E VD ++ T RKVN + NTID+
Sbjct: 23 GVDYRGKVVLAPMVRSGELPSRLLALHYGADLVWGPETVDKAIIGTTRKVNPVTNTIDWT 82
Query: 86 ---------DPLDG--SVVFRT-CPREKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
P D +VVF T +E ++I Q+GTADP+ A++AA+ V DVA ID+N
Sbjct: 83 RIPSFGQKEPPPDAKEAVVFSTHAAKEAGRLIFQVGTADPDLAVQAARLVAGDVAGIDVN 142
Query: 134 MGCPKQFSLTGGMGAA 149
GCPK FS GMG A
Sbjct: 143 AGCPKPFSTHSGMGRA 158
>gi|297794265|ref|XP_002865017.1| nitrogen regulation family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297310852|gb|EFH41276.1| nitrogen regulation family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 423
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 112/213 (52%), Gaps = 18/213 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K I+APMV + LPFRLL YGA Y+ L +TE+ N
Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQ-------------- 134
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F TC +E + +Q DP+ LEAAK+VE +DIN+GCP++ + G GA L+
Sbjct: 135 -EFTTC-KEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLM 192
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
+ +++ L NL++PVSCKIR+F N DT+ K LE G + VHGRT+ E+
Sbjct: 193 DNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLQDTLKYAKMLEDAGCSLLAVHGRTRDEKD 252
Query: 212 RHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+ R + I+ + L+IPV+ NG + I D
Sbjct: 253 GKKLRADWSAIKEVKNALRIPVLGNGNVRCIED 285
>gi|449468305|ref|XP_004151862.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Cucumis sativus]
gi|449484028|ref|XP_004156763.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Cucumis sativus]
Length = 426
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 112/213 (52%), Gaps = 18/213 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+I+APMV + LPFRLL YGA+ Y+ L + E+ N
Sbjct: 97 KLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRN--------------- 141
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
+ F TC +E + +Q DP+ LEAA++VE +D+N+GCP++ + G GA L+
Sbjct: 142 MEFTTC-QEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLM 200
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER- 210
+ I+ L SNL +PVSCKIR+F N DTI + LE G + VHGRT+ E+
Sbjct: 201 DNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKD 260
Query: 211 -PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ R I + ++IPV+ANG + + D
Sbjct: 261 GKKFRANWSAISAVKNAVRIPVLANGNIRHMED 293
>gi|66362388|ref|XP_628158.1| Dus1p, tRNA dihydrouridine synthase [Cryptosporidium parvum Iowa
II]
gi|46227613|gb|EAK88548.1| Dus1p, tRNA dihydrouridine synthase [Cryptosporidium parvum Iowa
II]
Length = 409
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 112/221 (50%), Gaps = 25/221 (11%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE--RKVNDLLN 80
N N+ S K +LAPMV + L FRL+ YG DL YS K + R+ N
Sbjct: 11 NWKNVLKSPKTVLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETN---- 66
Query: 81 TIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
F+TC E + +I+Q DPE ++A+K ++ V IDIN GCP+
Sbjct: 67 -------------FQTC-EEDDPMIVQFCGNDPETLVKASKFIDDKVKGIDINFGCPQNI 112
Query: 141 SLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIRVF--HNEADTIALCKRLEACGI 197
+ G GA LLS PD+ I++TL S+L PVSCKIR+ H+ TI L KRLE+ G
Sbjct: 113 AKRGNYGAFLLSNPDLMERIISTLSESDLKCPVSCKIRILDHHDLQPTINLIKRLESAGA 172
Query: 198 IAIGVHGRTKAERP--RHRNRIEMIRTLTQHLKIPVIANGG 236
I VHGRT R E ++ L IP IANGG
Sbjct: 173 CMIAVHGRTMTSRGVLTGPANWEALKILKSRCSIPFIANGG 213
>gi|323508721|dbj|BAJ77254.1| cgd1_3440 [Cryptosporidium parvum]
Length = 407
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 112/221 (50%), Gaps = 25/221 (11%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE--RKVNDLLN 80
N N+ S K +LAPMV + L FRL+ YG DL YS K + R+ N
Sbjct: 9 NWKNVLKSPKTVLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETN---- 64
Query: 81 TIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
F+TC E + +I+Q DPE ++A+K ++ V IDIN GCP+
Sbjct: 65 -------------FQTC-EEDDPMIVQFCGNDPETLVKASKFIDDKVKGIDINFGCPQNI 110
Query: 141 SLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIRVF--HNEADTIALCKRLEACGI 197
+ G GA LLS PD+ I++TL S+L PVSCKIR+ H+ TI L KRLE+ G
Sbjct: 111 AKRGNYGAFLLSNPDLMERIISTLSESDLKCPVSCKIRILDHHDLQPTINLIKRLESAGA 170
Query: 198 IAIGVHGRTKAERP--RHRNRIEMIRTLTQHLKIPVIANGG 236
I VHGRT R E ++ L IP IANGG
Sbjct: 171 CMIAVHGRTMTSRGVLTGPANWEALKILKSRCSIPFIANGG 211
>gi|124808213|ref|XP_001348259.1| tRNA-dihydrouridine synthase, putative [Plasmodium falciparum 3D7]
gi|23497150|gb|AAN36698.1| tRNA-dihydrouridine synthase, putative [Plasmodium falciparum 3D7]
Length = 340
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 113/214 (52%), Gaps = 19/214 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K I APMV ++ LPFRLL Y DL ++ L V+ E+
Sbjct: 27 KYISAPMVDLSELPFRLLCRKYNCDLTFTPMLHSKNFVEHEKY---------------RK 71
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F++C +K +I Q D + LEA ++ DV A+DIN+GCP+Q + G GA LL
Sbjct: 72 GYFKSCDMDK-PVIAQFCGNDSKILLEAINFIKDDVNAVDINLGCPQQIAKKGNYGAFLL 130
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNE-ADTIALCKRLEACGIIAIGVHGRTKAER 210
D N+++ + +N IP++CKIR N+ T+ LC L++ GI I VHGRTK E+
Sbjct: 131 HKHDEVVNLISDITNNCVIPITCKIRKIDNDYQKTLNLCYDLQSRGIKMITVHGRTKEEK 190
Query: 211 PRHRNR--IEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + E+IR + + L IP+IANG + D
Sbjct: 191 GINIKQCDYEIIRIIKERLNIPIIANGSIEHFED 224
>gi|83032642|ref|XP_729128.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23486029|gb|EAA20693.1| Drosophila melanogaster CG3645 gene product [Plasmodium yoelii
yoelii]
Length = 338
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 117/215 (54%), Gaps = 21/215 (9%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K +LAPMV ++ LPFRLL +Y DL ++ +L++ +FV+
Sbjct: 26 KYVLAPMVDLSELPFRLLCRNYNCDLAFTP----------------MLHSKNFVEHSKYR 69
Query: 92 V-VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
+ F+ C ++K +I Q DP L+A ++ DV +DIN+GCP+Q + G GA L
Sbjct: 70 IGYFKKCDQDK-PLIAQFCGNDPSTILKAIDYIKDDVNGVDINLGCPQQIAKKGNYGAFL 128
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNE-ADTIALCKRLEACGIIAIGVHGRTKAE 209
L D N+++ + +N ++P+SCKIR N+ T+ LC L++ + I VHGRTK E
Sbjct: 129 LHKHDEVVNLISDITNNCNVPISCKIRKIDNDYQKTLNLCYDLQSRNVKMITVHGRTKEE 188
Query: 210 RPRHRNR--IEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + E+I+ + + L IP+IANG + D
Sbjct: 189 KGVNIKECDYEIIKIIKERLNIPIIANGSIEHFED 223
>gi|326502988|dbj|BAJ95927.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 430
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 114/215 (53%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S ++++APMV + LPFR+L YGAD Y+ L + E+ +
Sbjct: 93 SPRLVVAPMVDNSELPFRMLCRRYGADAAYTPMLHSRIFSENEKHRD------------- 139
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+ F TC +E + +Q DP+ L+AAK VE + +D+N GCP++ + G GA
Sbjct: 140 --MEFTTC-KEDRPLFVQFCANDPDILLQAAKMVEANCDYVDLNFGCPQRIAKRGYYGAF 196
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L+ + +++ L NL +PVSCKIR+F DT+A K LE G + VHGRT+ E
Sbjct: 197 LMDNLPLVKSLVQNLAGNLRVPVSCKIRIFPRLEDTLAYAKMLEEAGAALVAVHGRTRDE 256
Query: 210 R--PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + R + I+ + L+IPV+ANG + + D
Sbjct: 257 KDGKKFRADWDAIKAVKDALRIPVLANGNIRHMED 291
>gi|168050219|ref|XP_001777557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671042|gb|EDQ57600.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 117/214 (54%), Gaps = 20/214 (9%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF-VDPLDG 90
K+I+APM+ + LPFR+L YGA Y+ + ++ F + P
Sbjct: 15 KLIVAPMMDQSELPFRMLCRKYGATAAYTP----------------MFHSRPFALQPGYR 58
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
V F TCP E + +Q G DPE ++AA V+ D +DIN+GCP++ + G GA L
Sbjct: 59 RVEFTTCP-EDRPLFVQFGANDPELLVKAAMFVQEDCDYVDINLGCPQRVAKRGFYGAFL 117
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
+ + ++T L+S+L+ PVSCKIR+F + DT+A + LE G + VHGRT+ ++
Sbjct: 118 MDDLPLIQLMVTQLVSSLTTPVSCKIRIFPDLEDTLAYARMLENAGCSLLAVHGRTRDQK 177
Query: 211 PRHRNR--IEMIRTLTQHLKIPVIANGGSKEIVD 242
R E I+ + + ++IPV+ANG + + D
Sbjct: 178 DGRTTRADWEAIKAVKEAVRIPVLANGNIRWLED 211
>gi|226498556|ref|NP_001142214.1| uncharacterized protein LOC100274382 [Zea mays]
gi|194707636|gb|ACF87902.1| unknown [Zea mays]
gi|413934916|gb|AFW69467.1| hypothetical protein ZEAMMB73_005938 [Zea mays]
Length = 420
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 118/215 (54%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S ++++APMV + LPFR+L YGAD Y+ L H + +E N+ +++F
Sbjct: 88 SPRLLVAPMVDNSELPFRMLCRRYGADAAYTPML--HSRIFSE---NEKYRSMEFT---- 138
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
TC +E + +Q DP+ L+AAKKVE +DIN GCP++ + G GA
Sbjct: 139 ------TC-KEDRPLFVQFCANDPDILLQAAKKVEPYCDYVDINFGCPQRIARRGNYGAF 191
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L+ + +++ L +NL +PVS KIRVF DT+A K LE G + VHGRT+ E
Sbjct: 192 LMDNLPLVKSLVQNLAANLHVPVSVKIRVFPRLEDTLAYAKMLEEAGASLVAVHGRTRDE 251
Query: 210 R--PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + R + I+ + L++PV+ANG + + D
Sbjct: 252 KDGKKFRADWDAIKAVKDALRVPVLANGNIRHMED 286
>gi|356563594|ref|XP_003550046.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Glycine max]
Length = 377
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 18/213 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
+ I+APMV + LPFR+L YGA Y+ L +TE+ N+
Sbjct: 47 RFIVAPMVDNSELPFRMLCRKYGAQGAYTPMLHSRIFTETEKYRNE-------------- 92
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F TC +E + +Q DP+ L AA+KVE +DIN+GCP++ + G GA L+
Sbjct: 93 -EFTTC-KEDRPLFVQFCANDPDVLLAAARKVEPFCDYVDINLGCPQRIAKRGYYGAFLM 150
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
+ +++ L NL +PVSCKIR+F N DT+ + LE G + + VHGRT+ E+
Sbjct: 151 DNLPLVKSLVEKLAVNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCMLLAVHGRTRDEKD 210
Query: 212 RHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+ R + IR + ++IPV+ANG + + D
Sbjct: 211 GKKFRADWNAIRAVKNAVRIPVLANGNIRHMDD 243
>gi|255585121|ref|XP_002533266.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
gi|223526922|gb|EEF29128.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
Length = 426
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 117/213 (54%), Gaps = 18/213 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+++APMV + LPFR+L YGAD Y+ L H + TE N+ T +F
Sbjct: 92 KLLVAPMVDNSELPFRMLCRKYGADAAYTPML--HSRIFTE---NEKYRTQEFT------ 140
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
TC E + +Q DP+ LEAA+KVE +DIN+GCP++ + G GA L+
Sbjct: 141 ----TC-NEDRPLFVQFCANDPDILLEAARKVEPYCDYVDINLGCPQRIARRGNYGAFLM 195
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
+ +++ L NL++PVSCKIR+F DTI+ + LE G + VHGRT+ E+
Sbjct: 196 DNLPLVKSLVEKLALNLNVPVSCKIRLFPKLDDTISYARMLEEAGCSLLAVHGRTRDEKD 255
Query: 212 RHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+ R + I+ + +KIP++ANG + + D
Sbjct: 256 GKKFRADWKAIKAVRNAVKIPLLANGNVRHMDD 288
>gi|357123723|ref|XP_003563557.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Brachypodium
distachyon]
Length = 424
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 18/213 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
++++APMV + LPFR+L YGAD Y+ L + E+ N
Sbjct: 90 RLVVAPMVDNSELPFRMLCRRYGADAAYTPMLHSRIFSENEKNRN--------------- 134
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
+ F TC +E + +Q DP+ L+AAK VE +DIN GCP++ + G GA L+
Sbjct: 135 MEFTTC-KEDRPLFVQFCANDPDILLQAAKIVEPHCDYVDINFGCPQRIARRGYYGAFLM 193
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER- 210
+ +++ L +NL +PVSCKIR+F DT+A + LE G + VHGRT+ E+
Sbjct: 194 DNLPLVKSLVQNLSANLHVPVSCKIRIFPRLEDTLAYARMLEEAGASLVAVHGRTRDEKD 253
Query: 211 -PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ R + I+ + L+IPV+ANG + + D
Sbjct: 254 GKKFRADWDAIKAVKDALRIPVLANGNIRHMED 286
>gi|407039419|gb|EKE39634.1| dihydrouridine synthase (Dus) family protein [Entamoeba nuttalli
P19]
Length = 339
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 112/204 (54%), Gaps = 17/204 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
ILAPMV + L FR+L +G +L Y+ ++ V+++ N+++N++D
Sbjct: 25 ILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVESKVYRNEVVNSLD---------- 74
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
P+E+ II+QI +D AK ++ AIDIN+GCP++ + G GA L
Sbjct: 75 ----PKER-PIIIQIVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALD 129
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP-- 211
D I+ +I +++PV CK+RVF +E T+ + L+ CGI I VHGRT E+
Sbjct: 130 FDHTKEIVNAVIEAVNVPVYCKVRVFEDEDKTMRFVEMLQECGIWGIAVHGRTITEKQSM 189
Query: 212 RHRNRIEMIRTLTQHLKIPVIANG 235
+ R I + +HLKIPVIANG
Sbjct: 190 NYHARWNYIAKIKEHLKIPVIANG 213
>gi|242097028|ref|XP_002439004.1| hypothetical protein SORBIDRAFT_10g029830 [Sorghum bicolor]
gi|241917227|gb|EER90371.1| hypothetical protein SORBIDRAFT_10g029830 [Sorghum bicolor]
Length = 421
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 117/215 (54%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S ++++APMV + LPFR+L YGAD Y+ L H + +E N+ +++F
Sbjct: 86 SPRLLVAPMVDNSELPFRMLCRRYGADAAYTPML--HSRIFSE---NEKYRSMEFT---- 136
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
TC +E + +Q DP+ L+AAK VE +DIN GCP++ + G GA
Sbjct: 137 ------TC-KEDRPLFVQFCANDPDILLQAAKMVEPHCDYVDINFGCPQRIARRGNYGAF 189
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L+ + +++ L +NL +PVS KIRVF DT+A K LE G + VHGRT+ E
Sbjct: 190 LMDNLPLVKSLVQNLAANLHVPVSVKIRVFPRLEDTLAYAKMLEEAGASLVAVHGRTRDE 249
Query: 210 R--PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + R + I+ + L++PV+ANG + + D
Sbjct: 250 KDGKKFRADWDAIKAVKDALRVPVLANGNIRHMED 284
>gi|225438801|ref|XP_002283225.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Vitis vinifera]
Length = 424
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 111/213 (52%), Gaps = 18/213 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+I+APMV + LPFR+L YGA Y+ L + E+ S
Sbjct: 93 KLIVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSRIFSENEKYR---------------S 137
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F TC +E + +Q DP+ LEAA++VE +DIN+GCP++ + G GA L+
Sbjct: 138 QEFTTC-KEDRPLFVQFCANDPDTLLEAAQRVEPYCDYVDINLGCPQRIARRGNYGAFLM 196
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
+ +++ L NL +PVSCKIRVF N DTI + LE G + VHGRT+ E+
Sbjct: 197 DNLPLVKSLVEKLALNLHVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKD 256
Query: 212 RHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+ R + I+ + + IPV+ANG + + D
Sbjct: 257 GKKFRADWNAIKAVKNAVSIPVLANGDIRHMDD 289
>gi|68076617|ref|XP_680228.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501126|emb|CAH94784.1| conserved hypothetical protein [Plasmodium berghei]
Length = 338
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 113/219 (51%), Gaps = 29/219 (13%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVY-----SEELVDHKLVKTERKVNDLLNTIDFVD 86
K +LAPMV ++ LPFRLL +Y DL + S+ V+H +T
Sbjct: 26 KYVLAPMVDLSELPFRLLCRNYNCDLAFTPMLHSKNFVEHSKYRTG-------------- 71
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
F+ C ++K +I Q DP L A ++ +V +DIN+GCP+Q + G
Sbjct: 72 ------YFKKCDQDK-PLIAQFCGNDPSTILRAIDYIKDEVNGVDINLGCPQQIAKKGNY 124
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE-ADTIALCKRLEACGIIAIGVHGR 205
GA LL D N+++ + +N ++P+SCKIR N+ T+ LC L++ + I VHGR
Sbjct: 125 GAFLLHKHDEVVNLISDITNNCNVPISCKIRKIDNDYQKTLNLCYDLQSRNVKMITVHGR 184
Query: 206 TKAERPRHRNR--IEMIRTLTQHLKIPVIANGGSKEIVD 242
TK E+ + E+I+ + + L IP+IANG + D
Sbjct: 185 TKEEKGVNIKECDYEIIKIIKERLNIPIIANGSIENFED 223
>gi|413919015|gb|AFW58947.1| hypothetical protein ZEAMMB73_913989 [Zea mays]
gi|413919016|gb|AFW58948.1| hypothetical protein ZEAMMB73_913989 [Zea mays]
Length = 198
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 84/123 (68%), Gaps = 2/123 (1%)
Query: 1 MVREGTRLLLVKIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYS 60
V G R L + L + ++ + Y +K++LAPMVR+ TLPFRLLA +YGAD+ Y
Sbjct: 77 QVSRGPRFLPEQSRSALR--HGDEVGMEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYG 134
Query: 61 EELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAA 120
EE++DHK +K ER N+ L T DFV+ SVVFRTCP+E+ +++ Q+GT++ RAL+AA
Sbjct: 135 EEIIDHKFLKCERVTNESLGTTDFVEKGTDSVVFRTCPQERGRVVFQMGTSNAVRALKAA 194
Query: 121 KKV 123
+ V
Sbjct: 195 QIV 197
>gi|66815915|ref|XP_641974.1| tRNA-dihydrouridine synthase 1-like protein [Dictyostelium
discoideum AX4]
gi|60470022|gb|EAL68003.1| tRNA-dihydrouridine synthase 1-like protein [Dictyostelium
discoideum AX4]
Length = 435
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 24/216 (11%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV--KTERKVNDLLNTID 83
N+ S K +APMV L FR+L YGAD+VY+ KT R+ D
Sbjct: 47 NVLKSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRR--------D 98
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
+ + TCP ++ +++Q +PE ++AAK +E AID+N+GCP+Q +
Sbjct: 99 Y---------WSTCPEDR-PLVVQFCGNEPEWVVKAAKYIEDHCDAIDLNLGCPQQIARR 148
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
G G+ LL P I I+ L ++ +P+ CKIR+ N DTI L +L+ G + +H
Sbjct: 149 GNYGSFLLDKPHIILPIVQELHKHIKVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLTIH 208
Query: 204 GRTKAERPRHRNRI---EMIRTLTQHLKIPVIANGG 236
GRTK E+ H + I + IRT+ + L IPVIANG
Sbjct: 209 GRTK-EQKGHNSGIANWKAIRTIREQLSIPVIANGS 243
>gi|118399013|ref|XP_001031833.1| dihydrouridine synthase [Tetrahymena thermophila]
gi|89286167|gb|EAR84170.1| dihydrouridine synthase [Tetrahymena thermophila SB210]
Length = 444
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 109/209 (52%), Gaps = 17/209 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + + APMV + L FR+L YG L Y+ ++ K+++ + LN+
Sbjct: 71 SPQYVCAPMVDQSELAFRMLCRKYGTTLAYTP-MIHSKVLQDQGY--GYLNS-------- 119
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
VF TC +E + Q +P+ L A+ VE AIDIN GCP+ + G G+
Sbjct: 120 ---VFSTC-QEDRPLFAQFCGNNPDALLAGARYVEDKCDAIDINFGCPQGIAKRGRYGSY 175
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
LLS PD ++ L NLSIPV+CKIR+ N TI L K++EA G + VHGRTK +
Sbjct: 176 LLSEPDTIVALVKKLHENLSIPVTCKIRILPNRQQTIELAKKIEAAGCSILTVHGRTKEQ 235
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANGG 236
++I+ + + L IPV ANGG
Sbjct: 236 NKDTVGLCDWDIIKIIKEELSIPVFANGG 264
>gi|67479621|ref|XP_655192.1| dihydrouridine synthase (Dus) family protein [Entamoeba histolytica
HM-1:IMSS]
gi|56472312|gb|EAL49806.1| dihydrouridine synthase (Dus) family protein [Entamoeba histolytica
HM-1:IMSS]
gi|449704590|gb|EMD44804.1| tRNA-dihydrouridine synthase, putative [Entamoeba histolytica KU27]
Length = 339
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 111/204 (54%), Gaps = 17/204 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
ILAPMV + L FR+L +G +L Y+ ++ V+++ N+++N++D
Sbjct: 25 ILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVESKVYRNEVVNSLD---------- 74
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
P+E+ II+QI +D AK ++ AIDIN+GCP++ + G GA L
Sbjct: 75 ----PKEQ-PIIIQIVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALD 129
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP-- 211
D I+ +I ++IPV CK+RVF +E T+ + L+ CGI I VHGRT E+
Sbjct: 130 FDHTKEIVNAVIEAVNIPVYCKVRVFEDEEKTMRFVEMLQECGIWGIAVHGRTITEKQSM 189
Query: 212 RHRNRIEMIRTLTQHLKIPVIANG 235
+ R I + + LKIPVIANG
Sbjct: 190 NYHARWNYIAKIKERLKIPVIANG 213
>gi|115469926|ref|NP_001058562.1| Os06g0712900 [Oryza sativa Japonica Group]
gi|113596602|dbj|BAF20476.1| Os06g0712900 [Oryza sativa Japonica Group]
Length = 421
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K+++APMV + LPFR+L YGA Y+ L H + +E + + +
Sbjct: 86 SPKMVVAPMVDNSELPFRMLCRRYGATGAYTPML--HSRIFSENEKHRAME--------- 134
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
F TC +E + +Q DP+ L+AAK VE +DIN GCP++ + G GA
Sbjct: 135 ----FTTC-KEDRPLFVQFCANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAF 189
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L++ + +++ L +NL +PVSCKIR+F DT+A K LE G + VHGRT+ E
Sbjct: 190 LMNNLPLVKSLVQNLSANLHVPVSCKIRIFPRLEDTLAYAKMLEEAGASLVAVHGRTRDE 249
Query: 210 R--PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + R + I+ + L+IPV+ANG + + D
Sbjct: 250 KDGKKFRADWDAIKAVKDALRIPVLANGNIRHLDD 284
>gi|167381962|ref|XP_001735922.1| tRNA-dihydrouridine synthase [Entamoeba dispar SAW760]
gi|165901877|gb|EDR27854.1| tRNA-dihydrouridine synthase, putative [Entamoeba dispar SAW760]
Length = 340
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 22/225 (9%)
Query: 18 DMANANQANINYSNKI-----ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE 72
DM + + Y K+ ILAPMV + L FR+L +G +L Y+ ++ V+++
Sbjct: 5 DMNKEDSKFLFYREKLGNPQHILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVESK 64
Query: 73 RKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDI 132
N+++N++D P+E+ II+Q+ +D AK ++ AIDI
Sbjct: 65 VYRNEVVNSLD--------------PKER-PIIIQVVGSDANEMARTAKFLQSYCDAIDI 109
Query: 133 NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL 192
N+GCP++ + G GA L D I+ +I ++IPV CK+RVF +E T+ + L
Sbjct: 110 NLGCPQKIAQKGNYGAYLALDFDHTKEIVNAVIEAVNIPVYCKVRVFEDEDKTMKFVEML 169
Query: 193 EACGIIAIGVHGRTKAERP--RHRNRIEMIRTLTQHLKIPVIANG 235
+ CGI I VHGRT E+ + R I + + LKIPVIANG
Sbjct: 170 QECGIWGIAVHGRTINEKQSMNYHARWNYIAKIKEQLKIPVIANG 214
>gi|53792892|dbj|BAD54069.1| putative PP35 [Oryza sativa Japonica Group]
gi|53793348|dbj|BAD54568.1| putative PP35 [Oryza sativa Japonica Group]
gi|125598482|gb|EAZ38262.1| hypothetical protein OsJ_22639 [Oryza sativa Japonica Group]
Length = 396
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K+++APMV + LPFR+L YGA Y+ L H + +E + + +
Sbjct: 61 SPKMVVAPMVDNSELPFRMLCRRYGATGAYTPML--HSRIFSENEKHRAME--------- 109
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
F TC +E + +Q DP+ L+AAK VE +DIN GCP++ + G GA
Sbjct: 110 ----FTTC-KEDRPLFVQFCANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAF 164
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L++ + +++ L +NL +PVSCKIR+F DT+A K LE G + VHGRT+ E
Sbjct: 165 LMNNLPLVKSLVQNLSANLHVPVSCKIRIFPRLEDTLAYAKMLEEAGASLVAVHGRTRDE 224
Query: 210 R--PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + R + I+ + L+IPV+ANG + + D
Sbjct: 225 KDGKKFRADWDAIKAVKDALRIPVLANGNIRHLDD 259
>gi|195392594|ref|XP_002054942.1| GJ19062 [Drosophila virilis]
gi|194149452|gb|EDW65143.1| GJ19062 [Drosophila virilis]
Length = 137
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 77/107 (71%)
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLE 193
MGCPK+FS+ GGMGAALL+ P A +IL TL S L IPV+CKIR+ + DTI L ++L
Sbjct: 1 MGCPKEFSIKGGMGAALLADPAKAAHILRTLSSQLDIPVTCKIRILPDLLDTIRLVQQLA 60
Query: 194 ACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
GI AIG+H RT+ ERP+HR +++ + + IP+IANGGS+++
Sbjct: 61 VTGIAAIGIHARTRDERPQHRPHPDVLHAVASAVDIPIIANGGSRDM 107
>gi|340500057|gb|EGR26961.1| t-diRNAhydrouridine synthase, putative [Ichthyophthirius
multifiliis]
Length = 346
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 107/209 (51%), Gaps = 21/209 (10%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV--KTERKVNDLLNTIDFVDPLD 89
+ I APMV + L FR+L YG L Y+ ++ K+V + E+ + +
Sbjct: 22 QYICAPMVDQSELAFRMLCRKYGTTLAYTP-MISSKVVYDQGEKSLKNF----------- 69
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
F TCP E +I Q DPE LEA K ++ D A+DIN GCP+ + G G+
Sbjct: 70 ----FSTCP-EDRPLIAQFCGNDPEVLLEACKYIQKDCDAVDINFGCPQGIAKKGHYGSF 124
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
LL PD+ +++ L L IPV+CKIR+ + T+ L KR+E G + VHGRTK +
Sbjct: 125 LLQEPDLIESMVKKLHEELDIPVTCKIRIIRSREKTLELAKRIENAGCSILTVHGRTKEQ 184
Query: 210 RPR--HRNRIEMIRTLTQHLKIPVIANGG 236
++I+ + L IPV ANGG
Sbjct: 185 NKDLVGMCDWDIIKEIKDTLTIPVFANGG 213
>gi|125556734|gb|EAZ02340.1| hypothetical protein OsI_24443 [Oryza sativa Indica Group]
Length = 396
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K+++APMV + LPFR+L YGA Y+ L H + +E + + +
Sbjct: 61 SPKMVVAPMVDNSELPFRMLCRRYGATGAYTPML--HSRIFSENEKHRAME--------- 109
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
F TC +E + +Q DP+ L+AAK VE +DIN GCP++ + G GA
Sbjct: 110 ----FTTC-KEDRPLFVQFCANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAF 164
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L+ + +++ L +NL +PVSCKIR+F DT+A K LE G + VHGRT+ E
Sbjct: 165 LMDNLPLIKSLVQNLSANLHVPVSCKIRIFPRLEDTLAYAKMLEEAGASLVAVHGRTRDE 224
Query: 210 R--PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + R + I+ + L+IPV+ANG + + D
Sbjct: 225 KDGKKFRADWDAIKAVKDALRIPVLANGNIRHLDD 259
>gi|328868434|gb|EGG16812.1| tRNA-dihydrouridine synthase 4-like protein [Dictyostelium
fasciculatum]
Length = 346
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + LPFRLL +G DL +S L+ ++E + T F
Sbjct: 59 IAAPMVRFSKLPFRLLCKKWGCDLTFSPMLLAESFNRSEFARDSDFTTNQF--------- 109
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
N +I+Q D E A +KV + +DIN GCP+++ + MGA LL+T
Sbjct: 110 -------DNSLIVQFAANDGEELSAAVEKVANHCQGVDINCGCPQKWIIRENMGAGLLTT 162
Query: 154 PD-IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR 212
P+ I I TT +IP+S KIR+ + + TI L KR E G+ I VHGRT ++R
Sbjct: 163 PEKIEEMIKTTTRRITNIPLSIKIRIQKDMSQTIELAKRAERAGVSWITVHGRTSSQRSS 222
Query: 213 HRNRIEMIRTLTQHLKIPVIANG 235
H + I+ + + + IPV ANG
Sbjct: 223 HPVDYDAIKLVKESIGIPVFANG 245
>gi|168057686|ref|XP_001780844.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667700|gb|EDQ54323.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 401
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 123/245 (50%), Gaps = 20/245 (8%)
Query: 2 VREGTRLLLVKIFYVLDMANANQANINY--SNKIILAPMVRMNTLPFRLLALDYGADLVY 59
V RL + F VL A + N + K+++APMV + LPFR+L YGA Y
Sbjct: 13 VNSAKRLKVEAAFAVLPHAARAWDHWNKLGAPKLMVAPMVDQSELPFRMLCRKYGATAAY 72
Query: 60 SEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEA 119
S ++ +L + K F TCP E + +Q +P+ LEA
Sbjct: 73 SP-MLHSRLFAQDAKYR--------------LKEFSTCP-EDRPLFIQFCANNPDTLLEA 116
Query: 120 AKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF 179
AK V+ D +DIN GCP++ + G GA L+ + +++ L S L+ PVSCKIR+F
Sbjct: 117 AKLVQDDCDYVDINFGCPQRIAKRGNYGAFLMDDLPLVRSLVEKLSSGLTTPVSCKIRMF 176
Query: 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIE--MIRTLTQHLKIPVIANGGS 237
DT+A + +E G + VHGRT+ ++ R + +I+ + L+IPV+ANG
Sbjct: 177 PKLEDTLAYARMIEEAGCSLLAVHGRTRDQKDGKSIRADWGVIKAVKSALRIPVVANGNI 236
Query: 238 KEIVD 242
+ + D
Sbjct: 237 RWLED 241
>gi|123494891|ref|XP_001326617.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121909534|gb|EAY14394.1| hypothetical protein TVAG_255860 [Trichomonas vaginalis G3]
Length = 313
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 115/210 (54%), Gaps = 6/210 (2%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y NK+I APMVR ++L FRL L+YGADLV+S LVD ++ + + +D N I +
Sbjct: 9 YKNKLIAAPMVRGSSLSFRLACLEYGADLVFSPGLVDLAIIGSTMEKDD--NNISLIKVE 66
Query: 89 DGS--VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
+G +F T E+ K+I+Q+ T D A++AA + IDIN GCP+ F+ G
Sbjct: 67 NGHNRRIFHTTAEERGKLIIQLITVDGPNAIKAADMCTEFASGIDINCGCPESFACHRGG 126
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
G+ + + A +++ TL N +P+S K+RV +++ K + G +AI VHGR
Sbjct: 127 GSKM--QLESAVDVVKTLKMNSPLPISVKMRVKDTVEESLQFAKAMVDAGAVAITVHGRL 184
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
A++ E ++ + ++ I NGG
Sbjct: 185 AADKRHGSVDYEHMKEIFDNINCAKIGNGG 214
>gi|195035293|ref|XP_001989112.1| GH10224 [Drosophila grimshawi]
gi|193905112|gb|EDW03979.1| GH10224 [Drosophila grimshawi]
Length = 503
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA L YS + L T DP
Sbjct: 25 SPRYVVAPMVDQSELAWRMLCRRYGAQLCYSP-MYHANLFAT--------------DPKY 69
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q DP++ LEAA ++ A+DIN+GCP+ + G GA
Sbjct: 70 RKDALQTCP-EDRPLIIQFCGNDPQQILEAALAAQNYCDAVDINLGCPQAIAKRGHYGAF 128
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ I+ TL LSIPV+CKIR F + A TI K LEA G + VHGRT+ +
Sbjct: 129 LQDEWELLTQIVRTLHEKLSIPVTCKIRRFEDRAKTIEYAKMLEAAGCQLLTVHGRTREQ 188
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
+ + I+ + +H+KIP++ANG
Sbjct: 189 KGPLTGIADWSYIKDVREHIKIPMLANG 216
>gi|224094282|ref|XP_002310123.1| predicted protein [Populus trichocarpa]
gi|222853026|gb|EEE90573.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 22/234 (9%)
Query: 15 YVLDMANANQANINYSN----KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK 70
Y+ A +A ++S K+I+APMV + LPFR+L YGA+ Y+ L +
Sbjct: 64 YLSGEARVERAWGHWSKLGRPKLIVAPMVDNSELPFRMLCRKYGAEAAYTPMLHSRIFSE 123
Query: 71 TERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI 130
E+ + F TC +E + +Q DP+ L+AA++VE +
Sbjct: 124 NEKYRRE---------------EFTTC-KEDRPLFVQFCANDPDILLQAARRVEPYCDYV 167
Query: 131 DINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190
DIN+GCP++ + G GA L+ + +++ L NL++PVSCKIRVF DTI +
Sbjct: 168 DINLGCPQRIARRGYYGAFLMDNLLLVKSLVEKLAINLNVPVSCKIRVFPKLEDTINYAR 227
Query: 191 RLEACGIIAIGVHGRTKAER--PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
LE G + VHGRT+ E+ + R + I+ + L+IPV+ANG + + D
Sbjct: 228 MLEEAGCSLLAVHGRTRDEKDGKKFRADWKAIKAVKSALRIPVLANGNIRHMDD 281
>gi|149038073|gb|EDL92433.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
(predicted), isoform CRA_b [Rattus norvegicus]
Length = 380
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%)
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLE 193
MGCPK++S GGMGAALLS PD IL+TL+ PV+CKIR+ + DT+ L KR+E
Sbjct: 1 MGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIE 60
Query: 194 ACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237
GI AI VHGR + ERP+H E+IR + + L IPVIANGGS
Sbjct: 61 RTGISAIAVHGRNRDERPQHPVSCEVIRAIAETLSIPVIANGGS 104
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQY--EKLFRSLVTVNG 299
D G+ + F R YP + PKT L C+ ++ P YETVQ +++F S+VTV
Sbjct: 235 DTSGIIKMAIRFDRRAYPPQITPKTCLLEWCRREKLPQPVYETVQRPIDRMFCSVVTVAE 294
Query: 300 KQYTS 304
++Y S
Sbjct: 295 QKYQS 299
>gi|357613396|gb|EHJ68482.1| tRNA-dihydrouridine synthase [Danaus plexippus]
Length = 366
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 138/279 (49%), Gaps = 28/279 (10%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER-KVNDLLNTIDFVDPLDGSVVFRT 96
MVR + + FR L +YG DL ++ ++ + E+ + N+ + T +
Sbjct: 1 MVRYSKVQFRTLVKNYGVDLCFTPMILADSFCQNEKARSNEFITTTN------------- 47
Query: 97 CPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDI 156
+I+Q + + ++A++ V +D+N GCP+++++ G G ALLS P++
Sbjct: 48 ----DTPLIVQFAANNVDDFVDASQLVYPYADGVDLNCGCPQRWAMKDGYGCALLSRPEL 103
Query: 157 ACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR 214
N+L ++ +NL VS K+R+F + TI +C++LE CG+ + VHGRT ++
Sbjct: 104 VHNLLRSVRNNLPSHFSVSVKVRIFQDLKKTITMCQQLEQCGVNFMTVHGRTPLQKSGDN 163
Query: 215 NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS-LNC-------AFLRNHYPVEKLPKT 266
+EM++ + +KIPV+ANGG K + D ++S LNC L N KT
Sbjct: 164 IDVEMLKEVCDLVKIPVVANGGIKSLYDAEQLYSTLNCDGIMVADGILNNPALFTGANKT 223
Query: 267 ILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSK 305
LY + + + + ++ LV + GK T K
Sbjct: 224 PLYCVKHWMNLKDSSDDKITFQCYHHHLVFMLGKILTKK 262
>gi|148679393|gb|EDL11340.1| mCG20459, isoform CRA_a [Mus musculus]
Length = 380
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%)
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLE 193
MGCPK++S GGMGAALLS PD IL+TL+ PV+CKIR+ + DT+ L KR+E
Sbjct: 1 MGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIE 60
Query: 194 ACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237
GI AI VHGR + ERP+H E+IR + + L IPVIANGGS
Sbjct: 61 RTGISAIAVHGRNRDERPQHPVSCEVIRAIAETLSIPVIANGGS 104
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQY--EKLFRSLVTVNG 299
D G+ + F R YP + PK L C+ ++ P YETVQ +++F S+VTV
Sbjct: 235 DTSGIIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAE 294
Query: 300 KQYTS 304
++Y S
Sbjct: 295 QKYQS 299
>gi|330799310|ref|XP_003287689.1| hypothetical protein DICPUDRAFT_151810 [Dictyostelium purpureum]
gi|325082309|gb|EGC35795.1| hypothetical protein DICPUDRAFT_151810 [Dictyostelium purpureum]
Length = 324
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 16/202 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + LPFR+L +G D+ Y+ ++ + ++E + T F D
Sbjct: 38 IQAPMVRFSRLPFRMLCRKWGCDITYTPMIMAAEFNRSESARDSDYTTNQFED------- 90
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
++I+Q G + E AA+KV + + IDIN GCP+++ + G GA LL
Sbjct: 91 ---------QMIVQFGVNNAEELCAAAEKVANTCSGIDINCGCPQRWVMKEGYGANLLLN 141
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
PD +++ L + + +P S KIR+ + TI L KR E G+ I VHGRT A R H
Sbjct: 142 PDKIYDMVKQLNNRVPVPCSIKIRIQPDLNKTIELVKRAEKIGVSWITVHGRTSAMRSSH 201
Query: 214 RNRIEMIRTLTQHLKIPVIANG 235
+ I+ + ++ +PV ANG
Sbjct: 202 PVDYDAIKLVKENTSLPVFANG 223
>gi|193699924|ref|XP_001951016.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Acyrthosiphon
pisum]
Length = 471
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 18/207 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K +LAPMV + LP+R+L+ +G L ++ L V+ + +
Sbjct: 15 KYVLAPMVEQSELPWRMLSRKHGVQLCFAPMLHSQNFVQDRKYRKEF------------- 61
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F TCP E +++Q DP+ LEA K VE ID+N+GCP+ + G G+ L
Sbjct: 62 --FTTCP-EDRPLVVQFCGNDPKVILEAGKLVEDSCDVIDLNLGCPQAIAKRGFYGSFLQ 118
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
+ +I+ TL NL +PVSCKIR+F + TI+ K LE G + VHGRT+ ++
Sbjct: 119 DEWKLIFDIVKTLRDNLKVPVSCKIRIFEDLTKTISYAKMLEEAGCQMLSVHGRTRDQKG 178
Query: 212 RHRN--RIEMIRTLTQHLKIPVIANGG 236
R I+ + +++ IPV+ANG
Sbjct: 179 RLTGIADWSQIKAVKENVTIPVLANGN 205
>gi|66802582|ref|XP_635163.1| tRNA-dihydrouridine synthase 4-like protein [Dictyostelium
discoideum AX4]
gi|60463479|gb|EAL61664.1| tRNA-dihydrouridine synthase 4-like protein [Dictyostelium
discoideum AX4]
Length = 344
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 26/221 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE--RKVNDLLNTIDFVDPLDGS 91
I APMVR + LPFR+L +G D+ Y+ ++ + ++E R + +N +D +PL
Sbjct: 58 IQAPMVRFSRLPFRMLVKKWGCDITYTPMIMAAEFNRSEAARDSDFTINKLD--EPL--- 112
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
I+Q G + E + AA+KV+ IDIN GCP+++ + G GA LL
Sbjct: 113 -------------IVQFGVNNAEELVSAAEKVKDYCQGIDINCGCPQRWVMKEGFGANLL 159
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
P+ +++ + + + IP+S KIRV + DTI L KR E G+ I VHGRT A +
Sbjct: 160 LHPERIYDMVKQINNRVPIPISIKIRVQSDLKDTIELAKRAERIGVSWITVHGRTSAMKS 219
Query: 212 RHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
H + I+ + ++ +PV ANG S EI + GV
Sbjct: 220 SHPVDYDAIKLVKDNVTLPVFANGDVFTLSQSNEIREKTGV 260
>gi|393213071|gb|EJC98568.1| Dus-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 448
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 10/208 (4%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + LP+R+L+ YGA LVY+ +++ +++ ++ + + +
Sbjct: 28 SPKFVVAPMVDQSELPWRILSRHYGAQLVYTP-MINARMLSEDKHKSYKEQAFNLSHGEE 86
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
GS R +I+Q DP++ L+AAK VE A+DIN GCP+ + G G+
Sbjct: 87 GSTFDR-------PLIVQFAANDPDQLLKAAKLVESHCDAVDINFGCPQDIARRGHYGSY 139
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ ++ TL NLSIPV+ K RVF T+ K +E G + HGRT+ +
Sbjct: 140 LQDDWDLVYRLINTLHENLSIPVTAKFRVFPTVEKTVEYAKMMERAGAQILTCHGRTRDQ 199
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
R ++ + IR + Q + +PV ANG
Sbjct: 200 RGQNTGLADWDKIRAVKQAVAVPVFANG 227
>gi|440791671|gb|ELR12909.1| tRNAdihydrouridine synthase 1-like protein [Acanthamoeba
castellanii str. Neff]
Length = 430
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 113/215 (52%), Gaps = 20/215 (9%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
+++LAPMV M+ LPFR+L YGA+L Y+ + +L E K +
Sbjct: 98 RLVLAPMVDMSELPFRMLCRKYGAELCYTP-MYHSRLFAEEAKYRQM------------- 143
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F TCP E +++Q DPE L+AAK VE+D A+D+N+GCP+ + G G+ LL
Sbjct: 144 -EFSTCP-EDRPLVVQFCGNDPEVLLKAAKFVENDCDAVDLNLGCPQGIAKRGNYGSFLL 201
Query: 152 ST--PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
+ ++ L NL +PV CKIR+ + DT+ L + L+ G + VHGRT+
Sbjct: 202 DKCYWPLLYAMVRKLYENLKVPVFCKIRLLPSLDDTLQLARMLQDAGCQLLAVHGRTRDN 261
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+ + + IR + + L IPVIANG + D
Sbjct: 262 KGLYCTPADWDSIRIVKEALAIPVIANGNIAQFED 296
>gi|82617391|emb|CAI64302.1| dihydrouridine synthase like protein [uncultured archaeon]
Length = 318
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 20/218 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-ERKVNDLLNTID 83
AN+ N + LAPM + L FR+L YGA L YSE + + +V+ E+ + L
Sbjct: 4 ANLTLPNNLFLAPMANVTNLAFRMLCKKYGAALTYSEMISANAVVRQGEKTMQRGL---- 59
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDV--AAIDINMGCPKQFS 141
TC E+ I G + + EAA +E A ID+NMGCP
Sbjct: 60 ------------TCEDEQPFCIQMFGNS-TDTMTEAALILEETYRPAIIDVNMGCPAPLI 106
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIG 201
+ G+ALL++P + +I+++L N+S PVS KIRVF N T+ + + +E+ G AI
Sbjct: 107 VRQECGSALLNSPSLVHDIVSSLADNISTPVSTKIRVFDNMEKTLEIARTIESAGACAIT 166
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
VHGRT+ + + +E + + + L IPVIANG K+
Sbjct: 167 VHGRTREQMYSGTSSLEYAKRIKKELSIPVIANGDIKD 204
>gi|297568450|ref|YP_003689794.1| hypothetical protein [Desulfurivibrio alkaliphilus AHT2]
gi|296924365|gb|ADH85175.1| TIM-barrel protein, nifR3 family [Desulfurivibrio alkaliphilus
AHT2]
Length = 313
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 111/212 (52%), Gaps = 19/212 (8%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
I ++ +I AP+ + L FRLL +YGA L YSE + H LV+ + +LL T+
Sbjct: 11 IAPASPLIAAPLAGFSDLAFRLLCREYGAGLCYSEMISCHGLVRQQPSTLELLATV---- 66
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGG 145
P E+ +I+Q+ A+PE +AA + + IDINMGCP + + G
Sbjct: 67 -----------PAER-PVIMQLFGAEPEVMGQAAAILSRLPIDGIDINMGCPVKKVVKKG 114
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVH 203
GAAL+ P++A I+T ++ +PV+ KIR N A +R E CG AI VH
Sbjct: 115 AGAALMRQPELAAAIVTAVVKATELPVTVKIRTGWNHQRITAPEFARRCEDCGAAAITVH 174
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT ++ R +I + Q +K+PVI NG
Sbjct: 175 GRTWSDGFSGRADQRLIAAVKQAVKVPVIGNG 206
>gi|449016924|dbj|BAM80326.1| similar to tRNA dihydrouridine synthase Dus1p [Cyanidioschyzon
merolae strain 10D]
Length = 362
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 121/242 (50%), Gaps = 29/242 (11%)
Query: 13 IFYVLDMANANQANINY---------SNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL 63
+F+V+ +N ++ S + + APMV + L FRLL YG L Y+ L
Sbjct: 1 MFHVVGPGTSNMGHVQRAWDHFRAVGSPRFLCAPMVDASELAFRLLVRRYGVQLAYTPML 60
Query: 64 VDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKV 123
H L + L + + D F TC ++ ++ Q DP + AAK V
Sbjct: 61 --HSL--------NFLQSPKYRDEH-----FTTCALDR-PVVAQFCGNDPTTLVAAAKLV 104
Query: 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA 183
E V A+D+N+GCP+ + G GA L D+ +++ L ++ S+PV CKIRVF +E
Sbjct: 105 ESQVDAVDLNLGCPQNIARRGRYGAFLQDDWDLVQRLVSALSTHCSVPVWCKIRVFPDEH 164
Query: 184 DTIALCKRLEACGIIAIGVHGRTKAER---PRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
T+A K ++ G + VHGRT+ ++ P N MIR + +HL+IPV+ NG +
Sbjct: 165 KTLAYAKLIQDAGCSVLAVHGRTRDQKGNDPGPAN-WTMIRRIKEHLEIPVLMNGNIQSW 223
Query: 241 VD 242
D
Sbjct: 224 AD 225
>gi|428172536|gb|EKX41444.1| hypothetical protein GUITHDRAFT_158205 [Guillardia theta CCMP2712]
Length = 244
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 107/207 (51%), Gaps = 20/207 (9%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
+ I+APMV + L FR++ Y DL Y+ L V D L + + PL
Sbjct: 19 RWIMAPMVDQSELAFRMMGRKYNCDLCYTPMLHSRMFVNNAHYRKDYLQSFEKDRPL--- 75
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
I+Q +P L+AAK VE A+D+N+GCP++ + G G+ L+
Sbjct: 76 -------------IVQFCANNPNTLLQAAKYVEDSCDAVDLNLGCPQEIARRGRYGSFLM 122
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER- 210
D +++ T+ +L +P+ KIR+F + TI K +EA G AI +HGRT+ ++
Sbjct: 123 EDWDRIHDLVLTMKQSLKVPIWAKIRLFPEISQTIEYAKMIEAAGASAIAIHGRTRKQKG 182
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANG 235
P N ++ IR + +HL++PVIANG
Sbjct: 183 NNPGPAN-LDSIREVAKHLRVPVIANG 208
>gi|195386396|ref|XP_002051890.1| GJ17247 [Drosophila virilis]
gi|194148347|gb|EDW64045.1| GJ17247 [Drosophila virilis]
Length = 504
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 18/206 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
+ I+APMV + L +R+L YGA L YS + L T+ K
Sbjct: 26 RYIVAPMVDQSELAWRMLCRRYGAQLCYSP-MYHANLFATDLKYR--------------K 70
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
+TCP ++ +I+Q DP++ LEAA + A+DIN+GCP+ + G GA L
Sbjct: 71 DALQTCPADR-PLIIQFCGNDPQQMLEAALAAQDHCDAVDINLGCPQAIAKRGHYGAFLQ 129
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
+ I+ TL LS+PV+CKIR+F + TI K LEA G + VHGRT+ ++
Sbjct: 130 DEWQLLTQIVRTLHEQLSVPVTCKIRIFEDREKTINYAKMLEAAGCQLLTVHGRTREQKG 189
Query: 212 RHRNRIEM--IRTLTQHLKIPVIANG 235
+ I+ + QH+KIP+ ANG
Sbjct: 190 PLTGIADWSYIKDVRQHIKIPMFANG 215
>gi|326433345|gb|EGD78915.1| hypothetical protein PTSG_01890 [Salpingoeca sp. ATCC 50818]
Length = 459
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 109/210 (51%), Gaps = 22/210 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE--RKVNDLLNTIDFVDP 87
S K I+APMV + L +RLLA YGA L Y+ L V+ RK+N
Sbjct: 17 SPKHIVAPMVDQSELSWRLLARAYGAHLCYTPMLHSGVFVRDANYRKLN----------- 65
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
F TC E +I+Q DP+ LEAAK VE A+D+N+GCP+ + G G
Sbjct: 66 ------FTTCA-EDRPLIVQFCGNDPDTVLEAAKYVEDKCDAVDLNLGCPQNIARRGRYG 118
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
A L D I+ L + LS+PV+CKIR+F + T+A + LE G + VHGRT+
Sbjct: 119 AFLQDEWDTISAIVKRLHAELSVPVTCKIRIFDDLDKTLAYARMLEESGCQLLTVHGRTR 178
Query: 208 AER-PRHR-NRIEMIRTLTQHLKIPVIANG 235
++ PR + I+ + + IPV+ANG
Sbjct: 179 VQKGPRSGLANWDYIKAIKNAVSIPVVANG 208
>gi|340373875|ref|XP_003385465.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Amphimedon
queenslandica]
Length = 465
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 108/218 (49%), Gaps = 38/218 (17%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K+I+APMV + L +RL + +GA+L Y+ P+
Sbjct: 21 SPKLIVAPMVDQSELAWRLFSRQHGAELCYT--------------------------PMM 54
Query: 90 GSVVFRTCPR----------EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQ 139
+ +FR P+ E +I Q DP+ LEAA+ VE D A+DIN+GCP+
Sbjct: 55 HASLFRQSPKYRRENFATCAEDRPLIAQFCANDPQVLLEAARYVEEDCDAVDINLGCPQT 114
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIA 199
+ G GA L D+ ++ L LS+PV+CKIRVF + T+ K LE+ G
Sbjct: 115 IAKRGHYGAFLQDEWDLIAKMVNLLHCELSVPVTCKIRVFEDIDKTVRYAKMLESAGCQL 174
Query: 200 IGVHGRTKAERPRHRN--RIEMIRTLTQHLKIPVIANG 235
+ VHGRT++++ E I+ + ++L IPV ANG
Sbjct: 175 LTVHGRTRSQKGMLTGIASWEHIKAVKENLSIPVFANG 212
>gi|145551887|ref|XP_001461620.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429455|emb|CAK94247.1| unnamed protein product [Paramecium tetraurelia]
Length = 360
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 107/209 (51%), Gaps = 18/209 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K I APMV + L FR+L YG L Y+ L H + TE K + D
Sbjct: 17 SPKFICAPMVDQSELAFRMLTRKYGTTLAYTPML--HSRIMTESK--------SYKDEF- 65
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
F TCP E + Q+ DP+ ++AA ++ AIDIN+GCP+ + G GA
Sbjct: 66 ----FTTCP-EDRPLFAQLCGHDPQVLIKAALMIQDQCDAIDINLGCPQGIARKGLYGAY 120
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
LL + I+ L N+++PV+CKIR+F + T+ L K ++ G + VHGRTK +
Sbjct: 121 LLEKREQVLTIVKELKQNINVPVTCKIRMFKDRKRTLDLTKDIQEAGCSILTVHGRTKEQ 180
Query: 210 RPRHRNRIE--MIRTLTQHLKIPVIANGG 236
+ + +I + Q L+IPV ANGG
Sbjct: 181 NKDFVGQCDWTIIAEIKQILQIPVFANGG 209
>gi|427799037|gb|JAA64970.1| Putative trna-dihydrouridine synthase, partial [Rhipicephalus
pulchellus]
Length = 476
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + L +RLL+ +GA L Y+ L +K + + L T D
Sbjct: 17 SPKFVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAAVFLKDPKYRKETLATCD------ 70
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +I+Q DP+ EA++ V A+D+N+GCP+ + G GA
Sbjct: 71 ----------EDTPLIVQFCANDPDVLFEASRMVVGQCCAVDLNLGCPQAIARAGHYGAF 120
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ ++ L + L IP++CK+RVF T+ K LEA G + VHGRT+ +
Sbjct: 121 LQDEWDLLSRMVNKLHTELEIPITCKVRVFPEVDKTVEYAKMLEAAGCQVLTVHGRTRDQ 180
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ E IR + Q++KIPVIANG + + D
Sbjct: 181 KGPFTGLANWEHIRAVKQNVKIPVIANGNIQYLQD 215
>gi|421075868|ref|ZP_15536872.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans JBW45]
gi|392525980|gb|EIW49102.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans JBW45]
Length = 317
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 110/214 (51%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI N +ILAPM + LPFRLLA + G LVYSE + D L+ + +L ID
Sbjct: 4 GNIKLDNPVILAPMAGVTDLPFRLLAKEMGCGLVYSEMVSDKGLLYENCQTLHMLE-ID- 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
RE+ + +QI +DP+ +AA VE A I DINMGCP
Sbjct: 62 -------------ERER-PVAMQIFGSDPDSMAKAAIHVEKSGADIIDINMGCPTPKITK 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIG 201
G G AL+ PD+A I+ +++ + +PV+ KIR +E + + + K E GI AI
Sbjct: 108 NGSGCALMCQPDLAYQIMASVVKAVHVPVTVKIRKGWSEDSVNAVEMAKLAEKAGIAAIA 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + +IR + + + IPVI NG
Sbjct: 168 VHGRTREQFYTGEADWNIIRQVKESVVIPVIGNG 201
>gi|67588468|ref|XP_665355.1| ENSANGP00000019228 [Cryptosporidium hominis TU502]
gi|54656003|gb|EAL35125.1| ENSANGP00000019228 [Cryptosporidium hominis]
Length = 384
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 103/206 (50%), Gaps = 25/206 (12%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE--RKVNDLLNTIDFVDPLDGSVVFR 95
MV + L FRL+ YG DL YS K + R+ N F+
Sbjct: 1 MVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETN-----------------FQ 43
Query: 96 TCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPD 155
TC E + +I+Q DPE ++A+K ++ V IDIN GCP+ + G GA LLS PD
Sbjct: 44 TC-EEDDPMIVQFCGNDPETLVKASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLLSNPD 102
Query: 156 IACNILTTLI-SNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGVHGRTKAERP- 211
+ I++TL S+L PVSCKIR+ H+ TI L KRLE+ G I VHGRT R
Sbjct: 103 LMERIISTLSESDLKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVHGRTMTSRGV 162
Query: 212 -RHRNRIEMIRTLTQHLKIPVIANGG 236
E ++ L IP IANGG
Sbjct: 163 LTGPANWEALKILKSRCSIPFIANGG 188
>gi|21227445|ref|NP_633367.1| NifR3-like protein [Methanosarcina mazei Go1]
gi|20905814|gb|AAM31039.1| NifR3-like protein [Methanosarcina mazei Go1]
Length = 323
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 107/212 (50%), Gaps = 18/212 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S ++LAPM + L FRLL YGADL Y+E + L+ RK F+ L
Sbjct: 14 SGNLLLAPMADVTNLAFRLLCRRYGADLTYTEMINVDALLNESRK--------SFIKGLS 65
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDV--AAIDINMGCPKQFSLTGGMG 147
E +Q+ P++ AA +E + ID+NMGCP + G G
Sbjct: 66 --------SEEDRPFGVQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCG 117
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
+ALL++P++ +I+ L +L PVS KIR+ E T+ + + +E G A+ VHGRT
Sbjct: 118 SALLNSPELVYSIILELTESLDTPVSAKIRLLGREEKTLEIARLIEKAGASAVTVHGRTA 177
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
A+ + +E IR + L IPVIANG K+
Sbjct: 178 AQMYSGNSNLEGIRAVKNELSIPVIANGDVKD 209
>gi|320164949|gb|EFW41848.1| tRNA-dihydrouridine synthase 1-like protein [Capsaspora owczarzaki
ATCC 30864]
Length = 563
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 20/209 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S ++++APMV + L +R+L+ YGADL Y+ + + +L + D +
Sbjct: 31 SARLVVAPMVDQSELAWRMLSRRYGADLCYTP-MFNARLFAESQLYRDEM---------- 79
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
F TC E +++Q DP+ L AAK VE+D A+D+N+GCP+ + G G+
Sbjct: 80 ----FSTC-AEDRPLVVQFCANDPDHLLAAAKLVENDCDAVDLNLGCPQHIARRGHYGSF 134
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L+ D+ ++ L NL +PV+CKIR+F + T+ + LE G + VHGR + E
Sbjct: 135 LMEEWDLIERMVRKLHENLKVPVTCKIRIFPSVEKTVQYAQMLERAGCQLLTVHGRLR-E 193
Query: 210 RPRHRNRI---EMIRTLTQHLKIPVIANG 235
+ H+ + IR + + +KIPV ANG
Sbjct: 194 QKGHKTGLADWSYIRAVREAVKIPVFANG 222
>gi|452839637|gb|EME41576.1| hypothetical protein DOTSEDRAFT_73865 [Dothistroma septosporum
NZE10]
Length = 338
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 16/244 (6%)
Query: 12 KIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT 71
+IF +L A ++ +N I APM+R + LPFRL+A YG D++Y+ ++ H+ ++
Sbjct: 20 RIFRILASAKEDRRPLN-----IAAPMIRYSKLPFRLVARQYGTDVMYTPMMLAHEFNRS 74
Query: 72 ERKVNDLLNTIDFV-DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI 130
+ DF PL+ + +T + +I Q +DP AA+ + V +
Sbjct: 75 H-----IARDSDFTTHPLERA---QTTDGRHHAVIAQFAASDPAEFARAAELISPWVDGV 126
Query: 131 DINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI--PVSCKIRVFHNEADTIAL 188
++N GCP+ +++ G+G +L+ P+ ++ + L+ VS KIR+ + A TI
Sbjct: 127 NLNCGCPQSWAIKEGIGCSLMENPEAVAEMVRMTKARLASDKSVSVKIRIHKDIARTIDW 186
Query: 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248
+ ++ G+ I VHGRT+++R E +R L H+K+P+ ANG + + D +
Sbjct: 187 VRIVQDAGVDYITVHGRTRSQRSSTPPDYEAVRQLRPHIKVPMFANGDAYTLSDTKKIAD 246
Query: 249 LNCA 252
L A
Sbjct: 247 LTLA 250
>gi|157127436|ref|XP_001654979.1| t-diRNAhydrouridine synthase [Aedes aegypti]
gi|108882414|gb|EAT46639.1| AAEL002182-PA [Aedes aegypti]
Length = 581
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 108/208 (51%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + L +RLL+ +GA L YS K + D L
Sbjct: 92 SPKYVVAPMVDASELAWRLLSRRHGAQLCYSPMFHSSCFSKDPKYRKDSL---------- 141
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q DP+ LEAA + AIDIN+GCP+ + G GA
Sbjct: 142 -----QTCP-EDRPLIIQFCGNDPKVLLEAALLAQDHCDAIDINLGCPQAIAKRGHYGAF 195
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ I++TL S LS+PV+CKIR+F + TI K LEA G + VHGRT+ +
Sbjct: 196 LQDEWDLLKEIVSTLHSKLSVPVTCKIRIFEDMNKTIRYAKMLEAAGCQMLTVHGRTRDQ 255
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANG 235
+ + ++ L + LKIPV++NG
Sbjct: 256 KGPLTGIADWKYVKKLKEILKIPVLSNG 283
>gi|170034571|ref|XP_001845147.1| t-diRNAhydrouridine synthase [Culex quinquefasciatus]
gi|167875928|gb|EDS39311.1| t-diRNAhydrouridine synthase [Culex quinquefasciatus]
Length = 609
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + L +RLL+ +GA L YS K + D L
Sbjct: 104 SPKYVVAPMVDASELAWRLLSRRHGAQLCYSPMFHSSCFTKDPKYRKDSL---------- 153
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q DP+ LEA + AIDIN+GCP+ + G GA
Sbjct: 154 -----QTCP-EDRPLIIQFCGNDPKVLLEAGLLAQDHCDAIDINLGCPQAIAKRGHYGAF 207
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ I++TL NLS+PV+CK+R+F + A TI K LE+ G + VHGRT+ +
Sbjct: 208 LQDEWDLLKKIVSTLHQNLSVPVTCKVRIFEDMAKTIRYAKMLESAGCQMLVVHGRTRDQ 267
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+ + ++ L + +KIPV++NG + D
Sbjct: 268 KGPLTGVADWKYVKVLKEIMKIPVLSNGNIMSVED 302
>gi|330444963|ref|ZP_08308617.1| tRNA dihydrouridine synthase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328493081|dbj|GAA03114.1| tRNA dihydrouridine synthase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 321
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N++I+APM + PFR L L YGA + SE + + L KT + +N +++ +
Sbjct: 10 NQLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPDLWKTSKSLNRMVH--------E 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G R+ +QI ADP+ EAA+ VE+ IDINMGCP + G+
Sbjct: 62 GESGIRS---------VQIAGADPKLMAEAAQFSVENGAQIIDINMGCPAKKVNKRLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ +IL T++ + +PV+ K R + + + + K E CGI A+ +HGRT
Sbjct: 113 ALLQYPDLVEDILRTVVDAVDVPVTLKTRTGWDLENRNCVDIAKLAEQCGIQALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
KA + + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 173 KACMYKGEAEYDYIRAVKQAISIPVIANGDIDSPEKARFVLDYTGADAL 221
>gi|145545963|ref|XP_001458665.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426486|emb|CAK91268.1| unnamed protein product [Paramecium tetraurelia]
Length = 358
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 105/209 (50%), Gaps = 18/209 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K I APMV + L FR+ YG L Y+ L H + TE K + D
Sbjct: 17 SPKFICAPMVDQSELAFRMQTRKYGTTLAYTPML--HSRIMTESK--------SYKDEF- 65
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
F TCP E + Q+ DP+ ++AA ++ AID+N GCP+ + G GA
Sbjct: 66 ----FTTCP-EDRPLFAQLCGHDPQVIIKAALMIQDQCDAIDLNFGCPQGIARKGLYGAF 120
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
LL + I+ L N+ +PV+CKIRVF + T+ L K +++ G + VHGRTK +
Sbjct: 121 LLEKREQVLTIVKELKQNIKVPVTCKIRVFKDRKRTLDLTKDIQSAGCSILTVHGRTKEQ 180
Query: 210 RPRHRNRIE--MIRTLTQHLKIPVIANGG 236
+ + +I + Q L+IPV ANGG
Sbjct: 181 NKDFVGQCDWNIIAEIKQLLQIPVFANGG 209
>gi|195470200|ref|XP_002087396.1| GE16327 [Drosophila yakuba]
gi|194173497|gb|EDW87108.1| GE16327 [Drosophila yakuba]
Length = 505
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA+L YS + L T DP
Sbjct: 27 SPRYVVAPMVDQSELAWRMLCRRYGAELCYSP-MYHANLFAT--------------DPKY 71
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q D ++ L+AA + A+DIN+GCP+ + G G+
Sbjct: 72 RKDALQTCP-EDRPLIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSF 130
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ I++TL + L+IPV+CKIR+F + TI K LEA G + VHGRT+ +
Sbjct: 131 LQDEWELLTEIVSTLHAQLAIPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQ 190
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
+ + I+++ QH+KIP++ANG
Sbjct: 191 KGPLTGVADWNYIKSVRQHVKIPMLANG 218
>gi|195114456|ref|XP_002001783.1| GI15082 [Drosophila mojavensis]
gi|193912358|gb|EDW11225.1| GI15082 [Drosophila mojavensis]
Length = 510
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 107/208 (51%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA L YS + L T+ K
Sbjct: 22 SPRYVVAPMVDQSELAWRMLCRRYGAQLCYSP-MYHANLFATDLKYR------------- 67
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q DP++ LEAA + A+DIN+GCP+ + G G+
Sbjct: 68 -KDALQTCP-EDRPLIIQFCGNDPQQILEAALAAQDHCDAVDINLGCPQAIAKRGHYGSF 125
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ +I+ TL LS+PV+CKIR F + TI K LEA G + +HGRT+ +
Sbjct: 126 LQDEWELLTDIVRTLHEKLSVPVTCKIRRFEDREKTIQYAKMLEAAGCQLLTIHGRTREQ 185
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
+ + I+ + +H+KIP+ ANG
Sbjct: 186 KGPLTGIADWSYIKDVREHIKIPMFANG 213
>gi|343508291|ref|ZP_08745638.1| NifR3/Smm1 family protein [Vibrio ichthyoenteri ATCC 700023]
gi|342794252|gb|EGU30027.1| NifR3/Smm1 family protein [Vibrio ichthyoenteri ATCC 700023]
Length = 322
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 119/235 (50%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N NK+I+APM + PFR L L YGA + SE + + KL T + +++
Sbjct: 4 GNYQLKNKLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKLWNTAKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ EAA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAI 200
G+ALL PDI +IL ++S + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQHPDIIKDILQAVVSAVDVPVTLKTRTGWDTENRNCVQIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + Q + IPVIANG +K ++DY G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKQAISIPVIANGDIDSPEKAKFVLDYTGADAL 221
>gi|399216637|emb|CCF73324.1| unnamed protein product [Babesia microti strain RI]
Length = 360
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 19/219 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
++APMV + L FRLL YG++L Y+ L R + L + + D
Sbjct: 35 VVAPMVAQSDLAFRLLCRRYGSELAYTPMLHARYYNSDSR---NFLTSKTYRDK-----N 86
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
F T P+++ + Q +P+ + AA+ +E ++ A+DIN GCP++ + G GA LL
Sbjct: 87 FHTLPQDR-PLFAQFCGNNPDTIVRAARIIESEIDAVDINFGCPQEIARRGNYGAFLLDN 145
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEAD-TIALCKRLE-------ACGIIAIGVHGR 205
P C I++TL +L++PV+CKIR + T+ L ++LE A G I +HGR
Sbjct: 146 PQSMCEIISTLSKSLNVPVTCKIRKLDGDFQYTVNLSRQLEVTTFITQASGCDIIAIHGR 205
Query: 206 TKAERPR--HRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
K ER ++I+ + ++IP+IANGG + D
Sbjct: 206 RKDERGSKVKSADWDVIKNVVNSVRIPIIANGGVSSLED 244
>gi|338813921|ref|ZP_08625990.1| tRNA-U20-dihydrouridine synthase [Acetonema longum DSM 6540]
gi|337274097|gb|EGO62665.1| tRNA-U20-dihydrouridine synthase [Acetonema longum DSM 6540]
Length = 319
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 115/214 (53%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+++ +N +ILAPM + PFRLLA + LVYSE + D LV +L TI+
Sbjct: 4 GSVHIANPVILAPMAGVTDPPFRLLAKEMDCGLVYSEMISDKGLVYQNTHTVHML-TIN- 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVA-AIDINMGCPKQFSLT 143
P+EK + +QI ++PE +AAK VE A IDINMGCP +
Sbjct: 62 -------------PQEK-PVTVQIFGSEPEPMAQAAKIVERAGADIIDINMGCPTPKIVK 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD+A +I+ +++ + PV+ KIR +++ A + + E G+ A+
Sbjct: 108 NGEGSALMRKPDLAYSIMASVVEAVQAPVTVKIRKGWDDSSVNAPQIARLAEKAGVAAVA 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + E+IR + + + IPVI NG
Sbjct: 168 VHGRTREQFYAGTADWEIIRAVKESVAIPVIGNG 201
>gi|194853320|ref|XP_001968141.1| GG24669 [Drosophila erecta]
gi|190660008|gb|EDV57200.1| GG24669 [Drosophila erecta]
Length = 505
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA+L YS + L T DP
Sbjct: 27 SPRYVVAPMVDQSELAWRMLCRRYGAELCYSP-MYHANLFAT--------------DPKY 71
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q D ++ L+AA + A+DIN+GCP+ + G G+
Sbjct: 72 RKDALQTCP-EDRPLIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSF 130
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ I++TL + L+IPV+CKIR+F + TI K LEA G + VHGRT+ +
Sbjct: 131 LQDEWELLTEIVSTLHAKLAIPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQ 190
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANG 235
+ I+++ QH+KIP++ANG
Sbjct: 191 KGPLTGVANWNYIKSVRQHIKIPMLANG 218
>gi|157111456|ref|XP_001651572.1| tRNA-dihydrouridine synthase [Aedes aegypti]
gi|108878341|gb|EAT42566.1| AAEL005898-PA [Aedes aegypti]
Length = 391
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 21/206 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER-KVNDLLNTIDFVDPLDGSV 92
I APMVR + L FR L YG DL ++ ++ ++E+ ++N+
Sbjct: 26 ICAPMVRYSKLEFRNLVRSYGTDLTFTSMIMADSFCQSEKARLNEF-------------- 71
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
T R+ +I Q + L A + V +D+N GCP+++++ G G+ALL
Sbjct: 72 ---TTNRDDTPVIAQFAAKNAVDFLSATEMTFPYVDGVDLNCGCPQRWAMQDGYGSALLR 128
Query: 153 TPDIACNILTTLISNL--SIPVSCKIRVFHNE-ADTIALCKRLEACGIIAIGVHGRTKAE 209
TP++ ++L+T+ NL + VS K+R+ + TI +C++LEACGI I VHGRT A+
Sbjct: 129 TPELIADMLSTVRRNLPSTFSVSVKVRLLQKSLSATIDMCRQLEACGITFITVHGRTPAQ 188
Query: 210 RPRHRNRIEMIRTLTQHLKIPVIANG 235
+ E ++ + L IPV+ANG
Sbjct: 189 KTNIPVNQEALKEIKSSLGIPVVANG 214
>gi|389585875|dbj|GAB68605.1| tRNA-dihydrouridine synthase [Plasmodium cynomolgi strain B]
Length = 340
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 19/214 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K ILAPMV ++ L FRLL +Y L ++ L V+ E+
Sbjct: 27 KYILAPMVDLSELAFRLLCRNYNCHLTFTPMLHAKNFVEHEKY---------------RK 71
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F++C +++ +I Q + L A + ++++V A+D+N+GCP+Q + G GA LL
Sbjct: 72 SYFQSCEKDE-PVIAQFCGNSSKILLNAIEYIKNEVNAVDLNLGCPQQIAKKGNYGAFLL 130
Query: 152 STPDIACNILTTLISNLSIPVSCKIR-VFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
D N+++ + +N SIP++CKIR + + T+ LC L++ + I VHGRTK E+
Sbjct: 131 HKHDEVVNLVSDITNNCSIPITCKIRKIDQDYQKTLNLCYDLQSRNVKMITVHGRTKEEK 190
Query: 211 PRHRNR--IEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + E+I+ + + L IP+IANG + D
Sbjct: 191 GVNIKQCDYEIIKIIKERLNIPIIANGSIEHFED 224
>gi|452825082|gb|EME32081.1| tRNA-dihydrouridine synthase 1 [Galdieria sulphuraria]
Length = 314
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 114/230 (49%), Gaps = 28/230 (12%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE--RKVNDLLNTIDFVDP 87
S K I APMV + LPFRLL YG +L Y+ L ++ E RK +
Sbjct: 15 SPKWICAPMVDQSELPFRLLCRRYGVELCYTPMLHSRIFLQEEKYRKTH----------- 63
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
F TC E +++Q DP+ + AA+ V+ A+D+N+GCP+ + G G
Sbjct: 64 ------FTTC-EEDRPLVVQFCANDPDIFVRAAELVQFQCDAVDLNLGCPQHIAKKGYYG 116
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
A L + I++T + LS+PV CKIR+F + TI + +E G + VHGRT+
Sbjct: 117 AFLQDNWQLIERIVSTAANKLSVPVWCKIRIFDDVKRTIEYARMIENAGCQVLAVHGRTR 176
Query: 208 AERPRHRN--RIEMIRTLTQHLKIPVIANG------GSKEIVDYGGVFSL 249
++ + + IR + + L IPV+ANG G+K +++ G +
Sbjct: 177 EQKGKEPGPANWDTIRAVREALSIPVLANGSVSSLQGAKLCLEHTGCLGV 226
>gi|196000454|ref|XP_002110095.1| hypothetical protein TRIADDRAFT_21776 [Trichoplax adhaerens]
gi|190588219|gb|EDV28261.1| hypothetical protein TRIADDRAFT_21776 [Trichoplax adhaerens]
Length = 427
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 110/221 (49%), Gaps = 22/221 (9%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK--TERKVNDLLNTIDFVDPLD 89
K ++APMV + L +RLL YGA L Y+ L ++ T R+ N
Sbjct: 12 KYVVAPMVDQSELAWRLLCRRYGAQLCYTPMLHSAVFIRDATYRREN------------- 58
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
F+TCP E +I+Q DP+ L+AAK VE A+D+N+GCP+ + G GA
Sbjct: 59 ----FKTCP-EDRPLIVQFCGNDPDTLLKAAKIVEPHCDAVDLNLGCPQAIAKRGHYGAF 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L + I++ L NL IPV+CKIR+F++ T+ + LE G + VHGRT+ +
Sbjct: 114 LQDDWKLLEKIVSHLHQNLKIPVTCKIRIFNDLDKTVKYAQLLEKAGCQLLTVHGRTREQ 173
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANGGSKEIVDYGGVFS 248
+ + I+ + L IPV ANG + D F+
Sbjct: 174 KKELTGLADWNFIKVIKDSLSIPVFANGNIQYFEDLERCFT 214
>gi|326792443|ref|YP_004310264.1| hypothetical protein Clole_3376 [Clostridium lentocellum DSM 5427]
gi|326543207|gb|ADZ85066.1| TIM-barrel protein, nifR3 family [Clostridium lentocellum DSM 5427]
Length = 324
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 25/230 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ N + LAPM + LPFRL+ ++G ++ +E + L+ K NDLL +
Sbjct: 4 GTVETPNNVFLAPMAGITDLPFRLICKEFGVGMMTTEMVSAKGLLYENGKTNDLL----Y 59
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT 143
+DP +++ I Q+ +DP+ E AK+VE DV IDINMGCP
Sbjct: 60 IDP------------KEHPIGAQLFGSDPKILSEMAKQVEQSDVDFIDINMGCPAPKITK 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIG 201
G G+ALL P++ I+ + L+ P++ KIR N+ + + + K +E G AI
Sbjct: 108 NGEGSALLKNPELIGEIVYAVAKALTKPLTVKIRKGFNDEMVNAVEVAKIIEEAGASAIA 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
+HGRT+ + ++I+ + QH+ IP+I NG +K ++DY G
Sbjct: 168 LHGRTREQFYSGSADWDIIKEVKQHIHIPLIGNGDIRTPQDAKRMLDYTG 217
>gi|195575487|ref|XP_002077609.1| GD22975 [Drosophila simulans]
gi|194189618|gb|EDX03194.1| GD22975 [Drosophila simulans]
Length = 505
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA+L YS + L T DP
Sbjct: 27 SPRYVVAPMVDQSELAWRMLCRRYGAELCYSP-MYHANLFAT--------------DPKY 71
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q D ++ L+AA + A+DIN+GCP+ + G G+
Sbjct: 72 RKDALQTCP-EDRPLIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSF 130
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ I++TL + L++PV+CKIR+F + TI K LEA G + VHGRT+ +
Sbjct: 131 LQDEWELLTEIVSTLHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQ 190
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
+ + I+ + QH+KIP++ANG
Sbjct: 191 KGPLTGVADWNYIKNVRQHIKIPMLANG 218
>gi|195350041|ref|XP_002041550.1| GM16688 [Drosophila sechellia]
gi|194123323|gb|EDW45366.1| GM16688 [Drosophila sechellia]
Length = 503
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA+L YS + L T DP
Sbjct: 27 SPRYVVAPMVDQSELAWRMLCRRYGAELCYSP-MYHANLFAT--------------DPKY 71
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q D ++ L+AA + A+DIN+GCP+ + G G+
Sbjct: 72 RKDALQTCP-EDRPLIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSF 130
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ I++TL + L++PV+CKIR+F + TI K LEA G + VHGRT+ +
Sbjct: 131 LQDEWELLTEIVSTLHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQ 190
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
+ + I+ + QH+KIP++ANG
Sbjct: 191 KGPLTGVADWNYIKNVRQHIKIPMLANG 218
>gi|19920448|ref|NP_608507.1| CG3645, isoform A [Drosophila melanogaster]
gi|24580595|ref|NP_722619.1| CG3645, isoform B [Drosophila melanogaster]
gi|442624911|ref|NP_001259809.1| CG3645, isoform C [Drosophila melanogaster]
gi|15292203|gb|AAK93370.1| LD42056p [Drosophila melanogaster]
gi|22945600|gb|AAF51525.2| CG3645, isoform A [Drosophila melanogaster]
gi|22945601|gb|AAN10512.1| CG3645, isoform B [Drosophila melanogaster]
gi|220955978|gb|ACL90532.1| CG3645-PA [synthetic construct]
gi|295293325|gb|ADF87928.1| MIP22167p [Drosophila melanogaster]
gi|440213055|gb|AGB92346.1| CG3645, isoform C [Drosophila melanogaster]
Length = 505
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA+L YS + L T DP
Sbjct: 27 SPRYVVAPMVDQSELAWRMLCRRYGAELCYSP-MYHANLFAT--------------DPKY 71
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q D ++ L+AA + A+DIN+GCP+ + G G+
Sbjct: 72 RKDALQTCP-EDRPLIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSF 130
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ I++TL + L++PV+CKIR+F + TI K LEA G + VHGRT+ +
Sbjct: 131 LQDEWELLTEIVSTLHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQ 190
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANG 235
+ I+ + QH+KIP++ANG
Sbjct: 191 KGPLTGVANWNYIKNVRQHIKIPMLANG 218
>gi|195155541|ref|XP_002018662.1| GL25830 [Drosophila persimilis]
gi|194114815|gb|EDW36858.1| GL25830 [Drosophila persimilis]
Length = 507
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 107/208 (51%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA+L YS + + D L
Sbjct: 26 SPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFAHDPKYRKDAL---------- 75
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q D ++ L+AA + A+DIN+GCP+ + G G+
Sbjct: 76 -----QTCP-EDRPLIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSF 129
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ +I+ TL LS+PV+CKIR+F + T+ K LEA G + VHGRT+ +
Sbjct: 130 LQDEWELLTDIVRTLHEKLSVPVTCKIRIFEDREKTLRYAKMLEAAGCQLLTVHGRTREQ 189
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
+ + I+ + QHLKIP+ ANG
Sbjct: 190 KGPLTGVADWSYIQEVRQHLKIPMFANG 217
>gi|398406519|ref|XP_003854725.1| hypothetical protein MYCGRDRAFT_37404, partial [Zymoseptoria
tritici IPO323]
gi|339474609|gb|EGP89701.1| hypothetical protein MYCGRDRAFT_37404 [Zymoseptoria tritici IPO323]
Length = 298
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 114/219 (52%), Gaps = 11/219 (5%)
Query: 37 PMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV-DPLDGSVVFR 95
P+ R + LPFRLLA YG D+ Y ++ H+ +++ + DF PL+ R
Sbjct: 1 PISRYSKLPFRLLARQYGTDITYVPMMLAHEFIRSH-----IARDADFTTHPLERE---R 52
Query: 96 TCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPD 155
T ++ +I Q ++DP AA+ + V +D+N GCP+ +++ G+G +L+ P+
Sbjct: 53 TPDGREHAVIAQFASSDPIEFARAAEMIAPWVDGVDLNCGCPQSWAIKEGIGCSLMEKPE 112
Query: 156 IACNILTTLISNLSI--PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
+ I+ L VSCKIRV + + TI L + ++ G+ I VHGRT+++R
Sbjct: 113 LMAAIIRAAKDVLPPEKSVSCKIRVHKDLSKTIKLVQIVQQAGVDFITVHGRTRSQRSST 172
Query: 214 RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
I +L H+ +P+IANG + + D + SL A
Sbjct: 173 PPDYAAILSLRPHVTVPLIANGDAYTLSDVSKIASLTSA 211
>gi|307206649|gb|EFN84621.1| tRNA-dihydrouridine synthase 1-like [Harpegnathos saltator]
Length = 304
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + I+APMV + LP+RLL+ +GA+L Y+ L + + + L +
Sbjct: 28 SPRCIVAPMVDASELPWRLLSRRHGAELCYTPMLHSSVFCRDPKYRREALTSTS------ 81
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +I+Q +DPE LEAA+ E A+DIN+GCP+ + G GA
Sbjct: 82 ----------EDRPLIVQFCGSDPEVLLEAARLAEPYCDAVDINIGCPQAIAKRGHYGAF 131
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ I++TL L IPV+CK+RVF T+ + LE G + VHGRT+ +
Sbjct: 132 LQDDWDLLQKIVSTLKRGLRIPVTCKLRVFPEVGRTVEYARMLENAGASLLTVHGRTREQ 191
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANG 235
+ E I+ + +KIPVIANG
Sbjct: 192 KGPLTGLASWEHIKAVKAAVKIPVIANG 219
>gi|405972534|gb|EKC37298.1| tRNA-dihydrouridine synthase 1-like protein [Crassostrea gigas]
Length = 485
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 112/216 (51%), Gaps = 20/216 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV-DPL 88
S K ++APMV + L +R+L+ YGA L Y+ + ++ FV DP
Sbjct: 30 SAKYVVAPMVDASELAWRMLSRKYGAQLCYT----------------PMFHSSVFVRDPN 73
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+TCP ++ +I+Q DP+ L+AA+ VE A+D+N+GCP+ + G GA
Sbjct: 74 YRKEAMQTCPDDR-PLIVQFCANDPDTFLKAAQYVEDICDAVDLNLGCPQTIAKRGHYGA 132
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
L D+ ++ L +P++CKIRVF ++ TI + LE G + VHGRTK
Sbjct: 133 FLEDEWDLLKKMVALCHQKLKVPITCKIRVFESKEKTIMYAQMLEQAGCQLLTVHGRTKE 192
Query: 209 ERPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
++ R ++I+ + + + IPV ANG + + D
Sbjct: 193 QKGRFTGLADWDIIKLVRESVSIPVFANGNIQYLPD 228
>gi|156102342|ref|XP_001616864.1| tRNA-dihydrouridine synthase [Plasmodium vivax Sal-1]
gi|148805738|gb|EDL47137.1| tRNA-dihydrouridine synthase, putative [Plasmodium vivax]
Length = 340
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 115/214 (53%), Gaps = 19/214 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K ILAPMV ++ L FRLL +Y L ++ L V+ E+
Sbjct: 27 KHILAPMVDLSELAFRLLCRNYNCHLTFTPMLHAKNFVEHEKY---------------RK 71
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F++C +++ +I Q + + L A + ++++V A+D+N+GCP+Q + G GA LL
Sbjct: 72 SYFQSCEKDE-PVIAQFCGNNSKIILNAIEYIKNEVNAVDLNLGCPQQIAKKGNYGAFLL 130
Query: 152 STPDIACNILTTLISNLSIPVSCKIR-VFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
D N+++ + +N +IP++CKIR + + T+ LC L++ + I VHGRTK E+
Sbjct: 131 QKHDEVVNLVSDITNNCNIPITCKIRKIDQDYQKTLNLCYDLQSRNVKMITVHGRTKEEK 190
Query: 211 PRHRNR--IEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + E+I+ + + L IP+IANG + D
Sbjct: 191 GTNIKQCDYEIIKIIKERLNIPIIANGSIEHFED 224
>gi|343494479|ref|ZP_08732740.1| NifR3/Smm1 family protein [Vibrio nigripulchritudo ATCC 27043]
gi|342825138|gb|EGU59638.1| NifR3/Smm1 family protein [Vibrio nigripulchritudo ATCC 27043]
Length = 322
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 118/235 (50%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA L SE + + K+ KT + +++
Sbjct: 4 GNYQLENNLIVAPMAGVTDRPFRELCLRYGAGLAVSEMMSSNPKVWKTAKSQQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP++ EAA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGADPQQMAEAAQYNVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PDI ILT +++ + +PV+ K R N + + + K E CGI A+
Sbjct: 107 KKLAGSALLQHPDIIEKILTAVVNAVDVPVTLKTRTGWNTDNKNCVQIAKMAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + + I+ + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTRACMYKGEAEYDSIKAAKAAVSIPVIANGDIDSPEKAKYVLEYTGADAL 221
>gi|343469577|emb|CCD17484.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 521
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 6/208 (2%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
++ PMV + LPFRLL YGA L YS L ++ + T +
Sbjct: 72 VVGPMVDQSELPFRLLCRRYGATLAYSPMLHARSFAQSAQYRQRYFTTTATTSQKLSTEA 131
Query: 94 FRTCPREKNK--IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
+ ++N + +Q DPE L AA+ VE A+D N+GCP+ + G G+ L+
Sbjct: 132 GASGEAQENDHPLFVQFCGNDPETVLAAARLVEDQCEAVDFNIGCPQGIARRGHYGSFLM 191
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
++ NIL TL L +PV+ K+R+F +EA T+ + L GI + VHGRT+ +
Sbjct: 192 EDWELLHNILHTLAVELRVPVTAKMRIFDDEALTLKYAEMLRDTGIYVLCVHGRTRENKG 251
Query: 212 RHRNR--IEMIRTLTQHLK--IPVIANG 235
+ + + ++MIR + HL +P+IANG
Sbjct: 252 QQQKQADLQMIRRVHSHLNGTVPIIANG 279
>gi|343498616|ref|ZP_08736643.1| NifR3/Smm1 family protein [Vibrio tubiashii ATCC 19109]
gi|418479947|ref|ZP_13049016.1| NifR3/Smm1 family protein [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342824203|gb|EGU58767.1| NifR3/Smm1 family protein [Vibrio tubiashii ATCC 19109]
gi|384572461|gb|EIF02978.1| NifR3/Smm1 family protein [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 320
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 119/235 (50%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL KT + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKLWKTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGADPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PDI +IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPDIIEDILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKQAISIPVIANGDIDSPEKAKHVLEYTGADAL 221
>gi|281207360|gb|EFA81543.1| tRNA-dihydrouridine synthase 1-like protein [Polysphondylium
pallidum PN500]
Length = 430
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 20/216 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APM+ L FR+L YGADLVY+ + ++ ++
Sbjct: 73 SPKHVVAPMIDHTFLAFRMLCRKYGADLVYT----------------PMFHSKNYATNAT 116
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+ +E +++Q + + ++AAK VE A+D+N+GCP+ + G GA
Sbjct: 117 YRLENFEIAKEDRPLVVQFCGNEVDYIVQAAKMVESQCDAVDLNLGCPQGIARRGNYGAF 176
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
LL PD+ ++ L LS+P+ CKIR+ N DTI L +L+ G + VHGRTK +
Sbjct: 177 LLEKPDVILPMVRALHKELSVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLTVHGRTKEQ 236
Query: 210 RPR---HRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ H N + IR + + L IPVIANG E D
Sbjct: 237 KGHTQPHAN-WKAIRAIKEALVIPVIANGSVGEWGD 271
>gi|428182359|gb|EKX51220.1| hypothetical protein GUITHDRAFT_66170 [Guillardia theta CCMP2712]
Length = 352
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 16/214 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + LPFR + +G +LVY+ ++ + + R + I+F
Sbjct: 7 IAAPMVRFSKLPFRHVVRSWGCELVYTPMIMAESFIASSRARD-----IEF--------- 52
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
T +I+Q D +AA + V +DIN GCP+++++ G+GAALL
Sbjct: 53 --TTNHHDRPVIVQFAAHDAMELSKAAALLAGKVDGVDINCGCPQRWAIKEGVGAALLKK 110
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
P++ +++ + +PVS KIR + +T+ L + E G+ I +HGRT +P
Sbjct: 111 PELVRDMVKMTRESSGLPVSIKIRTDPDLKETLRLTRLAEEVGVSFITLHGRTALSKPSD 170
Query: 214 RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247
+ IR + +HL++P++ANG K++ D +F
Sbjct: 171 PVDFDAIRLVKEHLRVPLVANGDVKQLQDVYDIF 204
>gi|384499529|gb|EIE90020.1| hypothetical protein RO3G_14731 [Rhizopus delemar RA 99-880]
Length = 392
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ILAPMV + L +R+L YGAD+ + + +L +K D T +
Sbjct: 18 SPKTILAPMVDQSELAYRILCRKYGADVCVTP-MFHARLFSEGQKYRDDQFTTN------ 70
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+E +I+Q DP+ L+AA+ VE+D A+D+N+GCP+ + G G+
Sbjct: 71 ---------KEDRPLIVQFCANDPDILLKAARFVENDCDAVDLNLGCPQNIAKRGRYGSF 121
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ +++TL L+IPV+ KIR F TI K +EA G + VHGR + +
Sbjct: 122 LQDEWELIEKMVSTLHRELAIPVTVKIRCFPTVEKTIEYAKMIEAAGAQMLTVHGRLREQ 181
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANG 235
R H + I+ + Q LKIPV+ANG
Sbjct: 182 RGHHTGLADWDKIKAVKQALKIPVVANG 209
>gi|312079658|ref|XP_003142269.1| tRNA-dihydrouridine synthase 4 [Loa loa]
gi|307762565|gb|EFO21799.1| tRNA-dihydrouridine synthase 4 [Loa loa]
Length = 333
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 109/223 (48%), Gaps = 26/223 (11%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
+ APMVR + LPFR+L Y D+ ++ + + +E+ S
Sbjct: 32 FVAAPMVRYSKLPFRMLVRLYAVDVAFTPMIYAKHFIASEQC---------------RSA 76
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
F TCP + N I+Q T +PE AA + ID+N GCP++ + G G++LL
Sbjct: 77 EFSTCPGD-NPTIVQFATNNPEEFFTAAMFISRYSRGIDLNCGCPQRDVMKEGYGSSLLV 135
Query: 153 TPDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
P+ +I+ T +S P VS KIR+ N T+ C++ E G+ I VHGRT +
Sbjct: 136 DPERIADIVATARRRISKPDFTVSIKIRLKTNRQLTLETCRQAEKAGVSFITVHGRTPEQ 195
Query: 210 RPRHRNRIEMIRTLTQHLKIPVIANGGSK------EIVDYGGV 246
R + EMI+ + L IPVIANG K ++V Y GV
Sbjct: 196 RSEPAD-YEMIKLIKSSLSIPVIANGNIKSYEQALQVVKYTGV 237
>gi|343510275|ref|ZP_08747523.1| NifR3/Smm1 family protein [Vibrio scophthalmi LMG 19158]
gi|343516323|ref|ZP_08753363.1| NifR3/Smm1 family protein [Vibrio sp. N418]
gi|342796526|gb|EGU32204.1| NifR3/Smm1 family protein [Vibrio sp. N418]
gi|342802821|gb|EGU38220.1| NifR3/Smm1 family protein [Vibrio scophthalmi LMG 19158]
Length = 322
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N NK+I+APM + PFR L L YGA + SE + + KL T + +++
Sbjct: 4 GNYQLKNKLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKLWNTAKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ EAA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAI 200
G+ALL P+I +IL ++S + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQHPEIIKDILNAVVSAVDVPVTLKTRTGWDTENKNCVYIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + Q + IPVIANG +K ++DY G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKQAISIPVIANGDIDSPEKAKFVLDYTGADAL 221
>gi|392959785|ref|ZP_10325264.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans DSM 17108]
gi|421053426|ref|ZP_15516403.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans B4]
gi|421058057|ref|ZP_15520794.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans B3]
gi|421064728|ref|ZP_15526574.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans A12]
gi|421071215|ref|ZP_15532337.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans A11]
gi|392442027|gb|EIW19636.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans B4]
gi|392447374|gb|EIW24621.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans A11]
gi|392455936|gb|EIW32703.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans DSM 17108]
gi|392460502|gb|EIW36796.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans A12]
gi|392461598|gb|EIW37775.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans B3]
Length = 317
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 108/212 (50%), Gaps = 19/212 (8%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
I N +ILAPM + LPFRLLA + G LVYSE + D L+ + +L ID
Sbjct: 6 IKLDNPVILAPMAGVTDLPFRLLAKEMGCGLVYSEMVSDKGLLYENCQTLHMLQ-ID--- 61
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVA-AIDINMGCPKQFSLTGG 145
RE+ + +QI +DP+ +AA VE A IDINMGCP G
Sbjct: 62 -----------ERER-PVAMQIFGSDPDSMAKAAIHVEKSGADIIDINMGCPTPKITKNG 109
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVH 203
G AL+ PD+ I+ +++ + +PV+ KIR +E + + + K E GI AI VH
Sbjct: 110 SGCALMCQPDLVYQIMASVVEAVHVPVTVKIRKGWSEDSVNAVEIAKLAEKAGIAAIAVH 169
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+ + +IR + + + IPVI NG
Sbjct: 170 GRTREQFYTGEADWSIIRQVKESVVIPVIGNG 201
>gi|342183086|emb|CCC92566.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 523
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 6/208 (2%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
++ PMV + LPFRLL YGA L YS L ++ + T +
Sbjct: 72 VVGPMVDQSELPFRLLCRRYGATLAYSPMLHARSFAQSAQYRQRYFTTTATTSQKLSTEA 131
Query: 94 FRTCPREKNK--IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
+ ++N + +Q DPE L AA+ VE A+D N+GCP+ + G G+ L+
Sbjct: 132 GASGEAQENDHPLFVQFCGNDPETVLAAARLVEDQCEAVDFNIGCPQGIARRGHYGSFLM 191
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
++ NIL TL L +PV+ K+R+F +EA T+ + L GI + VHGRT+ +
Sbjct: 192 EDWELLHNILHTLAVELRVPVTAKMRIFDDEALTLKYAEMLRDTGIYVLCVHGRTRENKG 251
Query: 212 RHRNR--IEMIRTLTQHLK--IPVIANG 235
+ + + ++MIR + HL +P+IANG
Sbjct: 252 QQQKQADLKMIRRVHSHLNGTVPIIANG 279
>gi|294650996|ref|ZP_06728336.1| tRNA-dihydrouridine synthase B [Acinetobacter haemolyticus ATCC
19194]
gi|292823097|gb|EFF81960.1| tRNA-dihydrouridine synthase B [Acinetobacter haemolyticus ATCC
19194]
Length = 341
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G E I QI +DPE+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 G---------ELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL T+++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDTVVAAVDVPVTLKTRLGFLNGQENILRVAKRAEEAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R E+I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 REDMYLNHARYELIKQVKQLISIPVIANGDIDSPEKAKYVLDYTGA 218
>gi|340057100|emb|CCC51442.1| putative dihydrouridine synthase domain protein [Trypanosoma vivax
Y486]
Length = 462
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 108/215 (50%), Gaps = 32/215 (14%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNT----IDF 84
Y K ILAPMVR+ + FR D+GAD+V+SEE+V KL + R+V+ T ++F
Sbjct: 35 YKGKTILAPMVRIGNIAFRTYCADHGADVVFSEEVVAAKLSRCTREVHQYDETSGHVVEF 94
Query: 85 V------DPLDGSVVFRTCPR-------EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
V + SVVF T R E I+LQ+G A AA DV ID
Sbjct: 95 VVYEPYKNSFKRSVVFSTSARMNEHVNGEGAPIVLQLGVAQATEGARAALLCCEDVDGID 154
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTL-----------ISNLSIPVSCKIRVFH 180
INMGCPK+FS+ GMGAAL+ A +IL + + + IP+S K R+
Sbjct: 155 INMGCPKKFSVDNGMGAALMCDTTRAASILVAIDDAVNSTEKVAMRHRRIPISFKTRLLE 214
Query: 181 NEADT----IALCKRLEACGIIAIGVHGRTKAERP 211
DT I++ +R+ + AI +H RT + P
Sbjct: 215 TVEDTVEMLISIMERVGMHRVHAITLHARTVNQPP 249
>gi|170099590|ref|XP_001881013.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643692|gb|EDR07943.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 234
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 22/219 (10%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT----ERKVNDLLNTIDFVDP 87
+ I APMV+ PFRLL YGA L Y++ L+ +++ E + DL +I D
Sbjct: 7 RYIAAPMVKQADGPFRLLVRKYGASLTYTQMLLPDRILNDQDYLEYHLRDL--SIASDDG 64
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
L+ VV + C DP+ ++A +K++ AID+N+GCP++ + G G
Sbjct: 65 LERPVVIQLCGH------------DPQTIVKAGRKLQGHCDAIDLNLGCPQESARDGHFG 112
Query: 148 AALLSTPD--IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
A LL + + I++ + S+ S+PV+ K+R+ T+ L +RLEACG+ + +H R
Sbjct: 113 AYLLGQKNWPLVEEIVSAMSSSFSVPVTAKLRLCQPSHATLDLSQRLEACGVSWVTLHAR 172
Query: 206 TKAERPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ R R + ++ ++ L +L++PV++NG +E D
Sbjct: 173 NVSARRRRQGSANLDEVKRLKGNLQVPVVSNGNVREFSD 211
>gi|164661924|ref|XP_001732084.1| hypothetical protein MGL_0677 [Malassezia globosa CBS 7966]
gi|159105986|gb|EDP44870.1| hypothetical protein MGL_0677 [Malassezia globosa CBS 7966]
Length = 473
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 115/215 (53%), Gaps = 12/215 (5%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER---KVNDLLNTIDFVD 86
S K I+APMV + L +R+L YGADLVY+ + V+ R +V + D +
Sbjct: 33 SPKCIVAPMVDQSELAWRILCRRYGADLVYTPMINAKIYVQQGRGTHRVREGFFNQDVGE 92
Query: 87 PLDGSVVFRTCPREKNK---IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
+G+ C K+ +I+Q DP+ LEAA+ V+ A+D+N+GCP+Q +
Sbjct: 93 --EGAHTLDLCDDRKDSDRPLIVQFCANDPDMLLEAAQAVQDKCDAVDLNLGCPQQIAKR 150
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
G GA L+ D+ ++ TL NL +PV+ K RV+ + +IA + ++ G + VH
Sbjct: 151 GKFGAFLMDDWDLVFRLINTLHLNLKVPVTAKFRVYDSVEKSIAYARMIQRAGAQIVTVH 210
Query: 204 GRTKAERPRHRNRI---EMIRTLTQHLKIPVIANG 235
GRT+ E H+ + ++R + + L IPV ANG
Sbjct: 211 GRTR-EMKGHKTGLADWSIMRAVKEALAIPVFANG 244
>gi|299473005|emb|CBN77406.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 461
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 110/211 (52%), Gaps = 18/211 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L FR L YG++L Y+ + + K V+ +F DP
Sbjct: 89 IVAPMVDQSELAFRRLCRRYGSNLCYT-PMYNSKCF----AVSSAYRKSNF-DPHP---- 138
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
E +I+Q DP L +AK VE + AID+N+GCP+ + G GA LL
Sbjct: 139 ------EDRPLIVQFCGHDPALLLASAKFVEKECDAIDLNLGCPQGIARKGRYGAFLLEE 192
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
+ +I++TL NLSIPV+CK+R+ + DTI +CK L A G I VHGRTK ++ +
Sbjct: 193 WALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKA 252
Query: 214 RN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ IR + + L +PV +NG + D
Sbjct: 253 TAGCNWDAIRRIKEALPVPVFSNGAISSLED 283
>gi|226951473|ref|ZP_03821937.1| tRNA-dihydrouridine synthase B [Acinetobacter sp. ATCC 27244]
gi|226837766|gb|EEH70149.1| tRNA-dihydrouridine synthase B [Acinetobacter sp. ATCC 27244]
Length = 341
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G E I QI +DPE+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 G---------ELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL T+++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDTVVAAVDVPVTLKTRLGFLNGQENILRVAKRAEEAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R E+I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 REDMYLNHARYELIKQVKQLIGIPVIANGDIDSPEKAKYVLDYTGA 218
>gi|407418441|gb|EKF38196.1| dihydrouridine synthase (Dus), putative [Trypanosoma cruzi
marinkellei]
Length = 519
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 117/239 (48%), Gaps = 24/239 (10%)
Query: 16 VLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKV 75
VL + ++A + ++ PMV + LPFR+L +GA L YS L ++ +
Sbjct: 81 VLGVEQNHRALLRRRPMYVVGPMVDQSELPFRMLCRRHGATLAYSPMLHARSFAQSAQYR 140
Query: 76 NDLLNT--------IDFVDPLDGSVV-----FRTCPREKNKIILQIGTADPERALEAAKK 122
+T + DP +G V R + + +Q D + L AA+
Sbjct: 141 ARYFSTTPHRTEAAMTTTDPREGEAVENAKRIRDGEEIDHPLFVQFCGNDADTLLAAARY 200
Query: 123 VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182
VE+D A+D+N+GCP+ + G G+ L+ D+ NIL L L +PV+ K+RVF ++
Sbjct: 201 VENDCEAVDVNLGCPQGIARRGHYGSFLMEDWDLVHNILHCLAVELRVPVTAKMRVFDDD 260
Query: 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNR----IEMIRTLTQHLK--IPVIANG 235
A T+ + L GI + VHGRT RH R +E IR + +HL+ IPVI NG
Sbjct: 261 ALTLKYAEMLRDTGIAVLCVHGRT-----RHNKRGLADMEKIRRVREHLRGSIPVIGNG 314
>gi|302833555|ref|XP_002948341.1| hypothetical protein VOLCADRAFT_80128 [Volvox carteri f.
nagariensis]
gi|300266561|gb|EFJ50748.1| hypothetical protein VOLCADRAFT_80128 [Volvox carteri f.
nagariensis]
Length = 422
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 21/235 (8%)
Query: 18 DMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVND 77
DMA +I S K +APMV + LPFRLL +GA Y+ ++ ++ +RK +
Sbjct: 35 DMAWEWFRSIG-SPKFHVAPMVDQSELPFRLLCRRHGATCAYTP-MLHARIFSQDRKYRE 92
Query: 78 LLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHD--VAAIDINMG 135
+ T TC E +++Q +P+ L AA+ V+ AIDIN G
Sbjct: 93 EMLT--------------TC-SEDRPLLVQFCAHEPQHLLAAARLVQDSGVADAIDINFG 137
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195
CP++ + GG GA L+ +++ L NL IPV+ KIR+F + A T+A + +EA
Sbjct: 138 CPQRIAKRGGYGAFLMDDLPRVESLVRVLAQNLRIPVTAKIRIFPDLAKTVAYARMVEAA 197
Query: 196 GIIAIGVHGRTKAERPRHRNRIEM--IRTLTQHLKIPVIANGGSKEIVDYGGVFS 248
G + VHGR + ++ R + IR + L +PV+ANG + + D G S
Sbjct: 198 GASLVAVHGRLREQKDNSSTRADWDAIRAVKAALSVPVLANGNIRHLGDVGACLS 252
>gi|148284888|ref|YP_001248978.1| tRNA-dihydrouridine synthase [Orientia tsutsugamushi str. Boryong]
gi|146740327|emb|CAM80734.1| putative tRNA-dihydrouridine synthase [Orientia tsutsugamushi str.
Boryong]
Length = 322
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI S +ILAPM + LPFR L +GA LV SE + +++ R+ ++ +
Sbjct: 6 GNIELSAPVILAPMSGVTDLPFRKLVKQFGAGLVVSEMVASRAMIQETRR--SMMKSAII 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
+ + GS V Q+ +P+ +AAK + D+ A IDIN GCP + +
Sbjct: 64 ENDITGSCV-------------QLAGCEPDVVADAAK-MNQDMGAQIIDINFGCPAKKVV 109
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAI 200
G G+AL+ +A IL + ++SIPV+ K+R +E+ + + K E CGI I
Sbjct: 110 GGYAGSALMKDESLAAKILAETVKSVSIPVTLKMRTGWDESCRNAHIIAKIAEDCGIQMI 169
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + ++ IR + + +KIPV+ANG
Sbjct: 170 TVHGRTRCQFYSGKSDWAFIRKVKESIKIPVVANG 204
>gi|336375552|gb|EGO03888.1| hypothetical protein SERLA73DRAFT_119513 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388669|gb|EGO29813.1| hypothetical protein SERLADRAFT_365819 [Serpula lacrymans var.
lacrymans S7.9]
Length = 245
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 15/213 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMV + LPFR+L YGA + Y++ L+ KL+ + ++ N D G
Sbjct: 9 ISAPMVNQSDLPFRILTRKYGATVAYTQMLIPEKLINDQAYLD--FNQRDICGSAGGL-- 64
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+ +++Q+ DPE ++A +K++ AID+N+GCP+ + G G LL
Sbjct: 65 -------ERPVVVQLCGNDPETIVKAGRKLQSYCDAIDLNLGCPQDHARDGHFGGYLLGQ 117
Query: 154 PD--IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
D + I++ + ++ ++PVS KIR+ + T+ L KR+E+ G + +H R + R
Sbjct: 118 KDWPLVEGIVSAMSNSFTVPVSAKIRLCQDTPKTVDLAKRIESAGASWVTLHARHVSARR 177
Query: 212 RHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
R + ++ I+ L + L IPV++NG + D
Sbjct: 178 RRQGAADLYEIKRLKEQLHIPVVSNGNVRTWAD 210
>gi|221060526|ref|XP_002260908.1| tRNA-dihydrouridine synthase [Plasmodium knowlesi strain H]
gi|193810982|emb|CAQ42880.1| tRNA-dihydrouridine synthase, putative [Plasmodium knowlesi strain
H]
Length = 340
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 114/214 (53%), Gaps = 19/214 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K +LAPMV ++ L FRLL +Y L ++ L V+ E+
Sbjct: 27 KHVLAPMVDLSELAFRLLCRNYNCHLAFTPMLHAKNFVEHEKY---------------RK 71
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F++C +++ +I Q + + L A + +++DV A+D+N+GCP+Q + G GA LL
Sbjct: 72 GYFQSCKKDE-PVIAQFCGNNSKIILSAIEYIKNDVNAVDLNLGCPQQIAKKGNYGAFLL 130
Query: 152 STPDIACNILTTLISNLSIPVSCKIR-VFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
D N+++ + +N +IP++CKIR + + T+ LC L++ + I VHGRTK E+
Sbjct: 131 HKHDEVVNLVSDITNNCNIPITCKIRKIDQDYQKTLNLCYDLQSRNVKMITVHGRTKEEK 190
Query: 211 PRHRNR--IEMIRTLTQHLKIPVIANGGSKEIVD 242
+ E+I+ + + L IP+IANG + D
Sbjct: 191 GVNIKECDYEIIKIIKERLNIPIIANGSIEHFED 224
>gi|340371111|ref|XP_003384089.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Amphimedon
queenslandica]
Length = 312
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 109/209 (52%), Gaps = 16/209 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + LPFR L YG + ++ +V V++++ + V
Sbjct: 24 MCAPMVRYSKLPFRKLVRRYGTQVAFTPMIVSESFVRSQKSRD---------------VE 68
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
F T P + ++ Q + E A++ V V A+D+N GCP+++++ G G+ L++
Sbjct: 69 FTTDPLDDRPLVAQFAANNVEDFSRASQLVSPFVDAVDLNCGCPQRWAMEEGYGSYLITR 128
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
P++ C+++ IPVS KIR+ + +T+ L +R EA G+ + VHGRT +R
Sbjct: 129 PELVCDMVRGAKRVTGIPVSIKIRIHEDLRETVELARRCEAIGLSWLTVHGRTVKQRAEP 188
Query: 214 RNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
N + I+ + + + IPVIANG + D
Sbjct: 189 VN-LSAIKLIKESVHIPVIANGDMRNESD 216
>gi|156364501|ref|XP_001626386.1| predicted protein [Nematostella vectensis]
gi|156213260|gb|EDO34286.1| predicted protein [Nematostella vectensis]
Length = 288
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 114/216 (52%), Gaps = 20/216 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L+ YGA+L Y+ ++ DP+
Sbjct: 25 SARYVVAPMVDQSELAWRMLSRRYGAELCYTPMFHAGMFIR---------------DPIY 69
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +TC ++ +I+Q DPE ++AA VE + +D+N+GCP+ + G GA
Sbjct: 70 RSEMMQTCVGDR-PLIVQFCANDPEVFVQAALLVESECDGVDLNLGCPQHIAKRGHYGAF 128
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ ++ LS+P++CKIRVF + TIA K LE+ G + VHGRT+ E
Sbjct: 129 LQDEWELLEKMVKLAHEKLSVPITCKIRVFDDVQKTIAYAKMLESAGCQLLTVHGRTR-E 187
Query: 210 RPRHRNRI---EMIRTLTQHLKIPVIANGGSKEIVD 242
+ R + + I+ + ++L IPV ANG + + D
Sbjct: 188 QKRELTGLADWDQIKAVRENLNIPVFANGNIQYLSD 223
>gi|89075353|ref|ZP_01161775.1| putative Dihydrouridine synthase [Photobacterium sp. SKA34]
gi|90581290|ref|ZP_01237087.1| putative Dihydrouridine synthase [Photobacterium angustum S14]
gi|89048902|gb|EAR54471.1| putative Dihydrouridine synthase [Photobacterium sp. SKA34]
gi|90437529|gb|EAS62723.1| putative Dihydrouridine synthase [Vibrio angustum S14]
Length = 321
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N++I+APM + PFR L L YGA + SE + + L KT + +N +++ +
Sbjct: 10 NQLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPDLWKTSKSLNRMVH--------E 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G R+ +QI ADP+ EAA+ VE+ IDINMGCP + G+
Sbjct: 62 GESGIRS---------VQIAGADPKLMAEAAQFSVENGAQIIDINMGCPAKKVNKRLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL P++ +IL +++ + +PV+ K R + + + + K E CGI A+ +HGRT
Sbjct: 113 ALLQYPNLIEDILRSVVDAVDVPVTLKTRTGWDLENRNCVDIAKLAEQCGIQALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
KA + + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 173 KACMYKGEAEYDYIRAVKQAISIPVIANGDIDSPEKARFVLDYTGADAL 221
>gi|198476736|ref|XP_002132430.1| GA25459 [Drosophila pseudoobscura pseudoobscura]
gi|198137829|gb|EDY69832.1| GA25459 [Drosophila pseudoobscura pseudoobscura]
Length = 507
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA+L YS + + D L
Sbjct: 26 SPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFAHDPKYRKDAL---------- 75
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q D ++ L+AA + A+DIN+GCP+ + G G+
Sbjct: 76 -----QTCP-EDRPLIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSF 129
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ +I+ TL LS+PV+CKIR+F + T+ K LEA G + VHGRT+ +
Sbjct: 130 LQDEWELLTDIVRTLHEKLSVPVTCKIRIFEDREKTLRYAKMLEAAGCQLLTVHGRTREQ 189
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
+ + I+ + +HLKIP+ ANG
Sbjct: 190 KGPLTGVADWSYIQEVRKHLKIPMFANG 217
>gi|303230948|ref|ZP_07317691.1| TIM-barrel protein, nifR3 family [Veillonella atypica
ACS-049-V-Sch6]
gi|302514330|gb|EFL56329.1| TIM-barrel protein, nifR3 family [Veillonella atypica
ACS-049-V-Sch6]
Length = 330
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 21/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ K ILAPM ++ + +RLLA ++GA +V +E + + + ++LL
Sbjct: 8 GNVPIQGKAILAPMAGVSDIAYRLLAKEHGASMVCTEMVSAMGIKYKNERTHELLRMEAV 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
P+ +QI +DPE A+ KV D A +DINMGCP + +
Sbjct: 68 EHPVS----------------MQIFGSDPE-AIALGAKVVADAGADIVDINMGCPVKKVV 110
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAI 200
+ G G+AL+ TPD+A + + + +PV+ K+R+ ++ + + KR+E+ G+ A+
Sbjct: 111 SSGDGSALMKTPDLAARVAEAAVKAVDVPVTVKMRIGWDDDHINVVDFAKRIESTGVAAV 170
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + R I+ + L IPVI NG
Sbjct: 171 AVHGRTREQMYMGRANWSYIKAVKDSLSIPVIGNG 205
>gi|407397505|gb|EKF27777.1| dihydrouridine synthase, putative [Trypanosoma cruzi marinkellei]
Length = 455
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 127/253 (50%), Gaps = 36/253 (14%)
Query: 10 LVKIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV 69
L +F +D++ +A Y K ILAPMVR+ + FR+ GAD+V++EE+V KL
Sbjct: 10 LHTLFACVDLSLQVKAMSFYRGKTILAPMVRVGNVGFRVFCAAQGADVVFTEEVVAAKLA 69
Query: 70 KTERKV---NDLLN-TIDFV------DPLDGSVVFRTCPR-------EKNKIILQIGTAD 112
+ R+V ND I+FV + SVVF T R E ++LQ+G +D
Sbjct: 70 RCHREVRVYNDAAGPMIEFVAYELFKNQYKRSVVFTTPIRDVANQSGEGAPVVLQLGVSD 129
Query: 113 PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--- 169
+ AA DV ID+NMGCPK+FS+ GMGAAL+ A +IL L L+
Sbjct: 130 EAVGVAAALLCCEDVDGIDVNMGCPKKFSVDNGMGAALMRETSKAASILFALDDALNAPD 189
Query: 170 --------IPVSCKIRVFHNEADT----IALCKRLEACGIIAIGVHGRT---KAERPRHR 214
+P+S KIR+ T I++ +++ A + AI +H RT AE H
Sbjct: 190 KLAARGRRVPLSFKIRLLETAEATAEMLISIMEKVGAHRVHAITLHARTVNQAAEDSPHY 249
Query: 215 NR-IEMIRTLTQH 226
+R E +R L H
Sbjct: 250 DRAAEAVRRLRSH 262
>gi|325188155|emb|CCA22696.1| tRNAdihydrouridine synthase putative [Albugo laibachii Nc14]
Length = 367
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 18/209 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + I+APMV + L FR+L +GA L Y+ + +L ++
Sbjct: 18 SPQRIVAPMVDQSELAFRMLCRHHGAQLCYT-PMFHSRLFAESQEYR------------- 63
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+ +F R++ +I+Q D + + AAK VE A+DIN+GCP+ + G GA
Sbjct: 64 -TRMFEQHVRDR-PLIVQFCGNDGDTMVAAAKYVEGHCDAVDINLGCPQGIARKGNYGAF 121
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L+ C I+ L++ +++PV+CKIRVF +EA+TI + LE G + +HGRTK
Sbjct: 122 LMKEKTRVCEIVEKLVAEVAVPVTCKIRVFPDEAETIEFSRMLEKAGCDLLVIHGRTKEM 181
Query: 210 RPRHRNRI--EMIRTLTQHLKIPVIANGG 236
++ E+I+ + L IPVIANGG
Sbjct: 182 NKVTVGQVDWEIIKRIKSTLSIPVIANGG 210
>gi|220930917|ref|YP_002507825.1| putative TIM-barrel protein, nifR3 family [Halothermothrix orenii H
168]
gi|219992227|gb|ACL68830.1| putative TIM-barrel protein, nifR3 family [Halothermothrix orenii H
168]
Length = 333
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 21/216 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N IILAPM + PFR ++ + L+Y+E + L+ RK DL+ DF
Sbjct: 4 GNLIVENPIILAPMAGVTDYPFRQISREMNCQLIYTEMVSSKGLIYGNRKTRDLM---DF 60
Query: 85 VDPLDGSVVFRTCPREKNKII-LQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFS 141
R K +I +QI DPE AA ++++ IDINMGCP
Sbjct: 61 -------------DRGKKGLIGIQIFGGDPETMARAAVQIKNHYRPDLIDINMGCPTPKI 107
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIA 199
+ G GAAL+ P+ A ++ + S + IPV+ KIR+ H+ + + + K E G+ A
Sbjct: 108 VKNGSGAALMKVPERAKRVMEAVASAVDIPVTVKIRMGWDHSHVNAVDIAKIAEEVGLKA 167
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ +HGRT+ + R ++IR + + + IPVI NG
Sbjct: 168 VAIHGRTREDFYRGEANWDIIREVKREVTIPVIGNG 203
>gi|396081789|gb|AFN83404.1| tRNA-dihydrouridine synthase [Encephalitozoon romaleae SJ-2008]
Length = 340
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 16/203 (7%)
Query: 35 LAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94
+APMV + +R L+ YGA++ Y++ + ++ R N + N +
Sbjct: 15 VAPMVGNSEEAWRRLSKRYGANMFYTQMVHCESFLRGPR--NPVRNQ------------W 60
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154
T E +I+QI PE LEAA ++ AIDIN GCP++ + GG GA L
Sbjct: 61 YTTSEEDRPLIIQICGNSPEAMLEAALIMQDHCDAIDINFGCPQRVARKGGYGAYLQENW 120
Query: 155 DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR 214
D+ I+ TL +NLSIPV CKIRVF + T+ + +E G + VHGRT+ ++ +
Sbjct: 121 DLTEKIVKTLSTNLSIPVFCKIRVFESIEKTVEYTRMIEKAGCSLLAVHGRTRDQKGKAM 180
Query: 215 N--RIEMIRTLTQHLKIPVIANG 235
+ I+ + + L IPV++NG
Sbjct: 181 GFASWDHIKAVKESLTIPVLSNG 203
>gi|298715097|emb|CBJ27785.1| dihydrouridine synthase [Ectocarpus siliculosus]
Length = 450
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 18/215 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV--KTERKVNDLLNTIDFVDPLD 89
K I APMV + FR L +G L Y++ L K E+ + +D
Sbjct: 95 KYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVD------ 148
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +I+Q +P+ + AA+ VEH A+D+N+GCP++ + G GA
Sbjct: 149 --------DEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAY 200
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
LL P + +I+ + LS+PV+ KIR E+DT+ L +RLE G + VHGRT +
Sbjct: 201 LLPNPQLCEDIVAAMSRELSVPVTVKIRAQDRESDTLDLARRLEGAGAQLLTVHGRTVSS 260
Query: 210 RPRHRNR--IEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + ++IR + + + IPV+ANGG + D
Sbjct: 261 QKTKQGAADWDIIRKVKEVVDIPVVANGGIETGAD 295
>gi|358063266|ref|ZP_09149885.1| hypothetical protein HMPREF9473_01947 [Clostridium hathewayi
WAL-18680]
gi|356698532|gb|EHI60073.1| hypothetical protein HMPREF9473_01947 [Clostridium hathewayi
WAL-18680]
Length = 319
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 114/216 (52%), Gaps = 23/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +ILAPM + LPFRLL + G L+ +E +V K + + K NT
Sbjct: 6 GNVALDNNLILAPMAGVTDLPFRLLCKEQGCGLMCTE-MVSAKAIYYKNK-----NTAPL 59
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE---HDVAAIDINMGCPKQFS 141
++ + E+ I +Q+ +DP E AK++E +D+ IDINMGCP
Sbjct: 60 LEVRE----------EERPIAVQLFGSDPVIMSEMAKQIEDGPYDI--IDINMGCPVPKV 107
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIA 199
+ G G+AL+ P + ILT ++ L PV+ K R +E + + + K E+CG+ A
Sbjct: 108 VNNGEGSALMKNPKLVEEILTAMVKALKKPVTVKFRRGFDETCVNAVEIAKIAESCGVAA 167
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ VHGRT+ + + E+IR + + +KIPVI NG
Sbjct: 168 VAVHGRTREQYYSGKADWEIIRQVKEAVKIPVIGNG 203
>gi|312884763|ref|ZP_07744464.1| NifR3/Smm1 family protein [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367676|gb|EFP95227.1| NifR3/Smm1 family protein [Vibrio caribbenthicus ATCC BAA-2122]
Length = 322
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 118/235 (50%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL KT + +++
Sbjct: 4 GNHQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKLWKTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PDI +IL ++S + +PV+ K R + + + + K E CGI A
Sbjct: 107 KKLAGSALLRYPDIIEDILRAVVSAVDVPVTLKTRTGWDTENKNCVHIAKLAEDCGIQAF 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + Q + IPVIANG +K ++DY G +L
Sbjct: 167 ALHGRTKACMYKGLAEYDSIKAVKQAISIPVIANGDIDSPERAKHVLDYTGADAL 221
>gi|209882371|ref|XP_002142622.1| dihydrouridine synthase family protein [Cryptosporidium muris RN66]
gi|209558228|gb|EEA08273.1| dihydrouridine synthase family protein [Cryptosporidium muris RN66]
Length = 405
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 21/228 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K +LAPMV + L +RLL YG DL ++ + H + + K++ NT
Sbjct: 13 SPKTVLAPMVDASELAYRLLCRKYGCDLAFTP--MYHSGLFS--KLSGYRNT-------- 60
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
F+TC +K +ILQ +PE L+A+K +++ V ID+N GCP+ + G GA
Sbjct: 61 ---NFQTCDDDK-PLILQFCGNNPEVILQASKYIDNKVQGIDLNFGCPQNIAKRGHYGAF 116
Query: 150 LLSTPDIACNILTTLI-SNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGVHGRT 206
LL P++ ++++ L+ S+L PVSCKIR+ ++ TI + RLE GI + VHGRT
Sbjct: 117 LLEEPELMESLVSKLVNSDLKCPVSCKIRLVCKNDLQKTINIMYRLEQAGISMLTVHGRT 176
Query: 207 KAERPRHRNR--IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
++ E ++ + Q IP IANGG D F A
Sbjct: 177 LKDKGTLTGSCDWESLKIMKQRCNIPFIANGGIHTFEDIQKCFDYTGA 224
>gi|328873275|gb|EGG21642.1| tRNA-dihydrouridine synthase 1-like protein [Dictyostelium
fasciculatum]
Length = 426
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 20/218 (9%)
Query: 28 NYSNKI-ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
N+SN I +LAPMV + L FRLL +GAD+VY+ + N+ F
Sbjct: 50 NHSNPIKVLAPMVEHSLLAFRLLTRKFGADVVYTP----------------MYNSKIFSH 93
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
F T P+++ +++Q + + +++AK VE A+DIN+GCP+ + G
Sbjct: 94 DATYRCNFSTNPQDR-PMVVQFCGNEVDHIVKSAKMVEDHCDAVDINLGCPQGIARKGFY 152
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GA LL PDI ++ L L +P+ CKIR+ + DTI L +L+ G + VHGRT
Sbjct: 153 GAFLLERPDIVLPMVRALHKELKVPIFCKIRLLPDIDDTIKLALQLQEAGCQLLTVHGRT 212
Query: 207 KAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
K ++ + IR + + + IPV ANG E D
Sbjct: 213 KEQKGEFLCHADWKAIRRVKEAVSIPVFANGSVDEYKD 250
>gi|346464753|gb|AEO32221.1| hypothetical protein [Amblyomma maculatum]
Length = 446
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + L +RLL+ +GA L Y+ L +K + + L + D
Sbjct: 17 SPKYVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAAVFLKDPKYRQESLASCD------ 70
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +I+Q DP+ EA++ V A+D+N+GCP+ + G GA
Sbjct: 71 ----------EDTPLIVQFCANDPDVLFEASRMVVGHCCAVDLNLGCPQAIARAGHYGAF 120
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ ++ L + L IP++CK+RVF T+ + LEA G + VHGRT+ +
Sbjct: 121 LQDEWDLLSKMVNKLHTELEIPITCKVRVFPEIEKTVRYAQMLEAAGCQVLTVHGRTRDQ 180
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ E I+ + Q++KIPVIANG + + D
Sbjct: 181 KGPSTGLASWEHIKAVKQNVKIPVIANGNIQYLHD 215
>gi|417953639|ref|ZP_12596682.1| NifR3/Smm1 family protein [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342816755|gb|EGU51648.1| NifR3/Smm1 family protein [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 320
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 119/235 (50%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL KT + +++
Sbjct: 4 GNHQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKLWKTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGADPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PDI +IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPDIIKDILQAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKQAISIPVIANGDIDSPEKAKFVLEYTGADAL 221
>gi|392584699|gb|EIW74043.1| Dus-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 480
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 106/208 (50%), Gaps = 9/208 (4%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + L +R+L+ YGA L+Y+ +++ K+ K + D +
Sbjct: 29 SPKYVVAPMVDQSELAWRVLSRRYGAQLIYTP-MINAKIFMAPSKASHRDAFFDIPSGEE 87
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
GS P +++Q DPE L+AAK VE AIDIN+GCP+ + G G+
Sbjct: 88 GS------PSLDRPLVVQFCGNDPETLLQAAKVVEDHCDAIDINLGCPQDIAKRGKYGSF 141
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L+ D+ ++ L NL IPV+ K RVF T+A K LE+ G + H R + +
Sbjct: 142 LMEDWDLIYKLVNILHVNLKIPVTAKFRVFPTVEKTVAYAKMLESAGAQILTCHSRLREQ 201
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANG 235
R + E IR + + + +PV ANG
Sbjct: 202 RGQRTGLADWEKIRAVKEAVSVPVFANG 229
>gi|78044326|ref|YP_361166.1| nifR3 family TIM-barrel protein [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996441|gb|ABB15340.1| putative TIM-barrel protein, NifR3 family [Carboxydothermus
hydrogenoformans Z-2901]
Length = 321
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 128/254 (50%), Gaps = 27/254 (10%)
Query: 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLN 80
+A + I N +I+APM + FRL+ +GA L +E + D L+ K +++
Sbjct: 2 SATRREIKLKNPVIVAPMAGVTDKAFRLICQSFGAGLTVTEMINDLALLHGNSKTRQMID 61
Query: 81 TIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA-IDINMGCPKQ 139
L G E + +QI + PE+ EAA+ VE A+ IDINMGCP
Sbjct: 62 -------LQG---------EAMPVAVQIFGSSPEKMAEAARIVEEAGASMIDINMGCPAP 105
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR--VFHNEADTIALCKRLEACGI 197
+ G GAAL+ P++A I+ + + +S+PVS KIR N + I +R+EA G
Sbjct: 106 KIVKNGEGAALMLKPELAEKIVMAVKNAVSVPVSVKIRKGFDDNTVNAIEFAQRMEAAGA 165
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV--FSL 249
I VHGRT+ + + E+IR + Q +K+ V NG +KE+++ GV +
Sbjct: 166 DLITVHGRTREQFYSGKADWEIIRRVKQAVKVKVAGNGDVDSPQKAKEMLELTGVDFVMI 225
Query: 250 NCAFLRNHYPVEKL 263
A + N + ++++
Sbjct: 226 GRAVMGNPWLIQQI 239
>gi|254506424|ref|ZP_05118566.1| tRNA-dihydrouridine synthase B [Vibrio parahaemolyticus 16]
gi|219550598|gb|EED27581.1| tRNA-dihydrouridine synthase B [Vibrio parahaemolyticus 16]
Length = 335
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 124/248 (50%), Gaps = 32/248 (12%)
Query: 12 KIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVK 70
K+F +L + N N +I+APM + PFR L L YGA + SE + + KL K
Sbjct: 11 KLFDILKIGN-----YQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKLWK 65
Query: 71 TERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAA 129
T + +++ +G R+ +QI ADP+ +AA+ VE+
Sbjct: 66 TSKSKQRMVH--------EGESGIRS---------VQIAGADPQLMADAAQFSVENGAQI 108
Query: 130 IDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIA 187
IDINMGCP + G+ALL PDI +IL +++ + +PV+ K R + + +
Sbjct: 109 IDINMGCPAKKVNKKLAGSALLQYPDIIEDILKAVVNAVDVPVTLKTRTGWDTDNKNCVQ 168
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIV 241
+ K E CGI A+ +HGRTKA + I+ + Q + IPVIANG +K ++
Sbjct: 169 IAKLAEDCGIQALALHGRTKACMYKGEAEYNSIKAVKQAISIPVIANGDIDSPEKAKFVL 228
Query: 242 DYGGVFSL 249
+Y G +L
Sbjct: 229 EYTGADAL 236
>gi|242002314|ref|XP_002435800.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
gi|215499136|gb|EEC08630.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
Length = 483
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +RLL +GA L Y+ L +K + D L + D
Sbjct: 17 SPRYVVAPMVDQSELAWRLLGRRHGAQLCYTPMLHASVFLKDPKYRRDALASCD------ 70
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +++Q DPE ++A++ V A+D+N+GCP+ + G GA
Sbjct: 71 ----------EDQPLVVQFCANDPEVLVQASRLVVGHCCAVDLNLGCPQAIARAGHYGAF 120
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ ++ + + + +P++CK+RVF T+ + LEA G + VHGRT+ +
Sbjct: 121 LQDDWDLLARMVQRVHTQVDVPITCKVRVFPEVEKTVRYAQMLEAAGCQVLTVHGRTREQ 180
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ H E IR + + +KIPVIANG + + D
Sbjct: 181 KGPHTGLASWEHIRAVKRSVKIPVIANGNIQYLED 215
>gi|158296576|ref|XP_316960.4| AGAP008484-PA [Anopheles gambiae str. PEST]
gi|157014776|gb|EAA12777.4| AGAP008484-PA [Anopheles gambiae str. PEST]
Length = 560
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +RLL+ +GA L YS K + D L
Sbjct: 40 SPRYVVAPMVDASELAWRLLSRRHGAQLCYSPMFHSSCFTKDPKYRKDSL---------- 89
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TCP E +I+Q DP+ LEAA + AIDIN+GCP+ + G GA
Sbjct: 90 -----QTCP-EDRPLIIQFCGNDPKIMLEAALLAQDHCDAIDINLGCPQAIAKRGHYGAF 143
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ I++TL +L+IPV+CKIR+F + A TI + L+ G + VHGRT+ +
Sbjct: 144 LQDEWELLREIVSTLHRHLAIPVTCKIRIFEDMAKTIRYARMLQDAGAQMLTVHGRTRDQ 203
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+ + +R L Q L IP+ +NG + D
Sbjct: 204 KGPLTGLADWKYVRVLRQQLSIPIFSNGNIMSVHD 238
>gi|254427671|ref|ZP_05041378.1| putative TIM-barrel protein, nifR3 family [Alcanivorax sp. DG881]
gi|196193840|gb|EDX88799.1| putative TIM-barrel protein, nifR3 family [Alcanivorax sp. DG881]
Length = 346
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 19/211 (9%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
N N +ILAPM + PFR L D GA L+ SE + + RK L+
Sbjct: 7 NLPNSLILAPMAGVTDRPFRRLCRDLGAGLLVSEMVTSDTRLWNSRKSRQRLDHSG---- 62
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGM 146
E I +QI +P EAA+ V+H IDINMGCP +
Sbjct: 63 ------------EPGPISVQIAGGEPTMLAEAARANVDHGAQIIDINMGCPAKKVCKRAA 110
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGVHG 204
G+ALL+ PD+ IL +++ + +PV+ KIR ++ + +A+ + EA GI A+ +HG
Sbjct: 111 GSALLADPDLVSRILDAVVNAVDVPVTLKIRTGPDRDQRNALAIARIAEAAGIQALAIHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+A++ I+ + + IPV+ANG
Sbjct: 171 RTRADKFNGDAEYTTIKQVVDAVNIPVMANG 201
>gi|429728506|ref|ZP_19263226.1| TIM-barrel protein, nifR3 family [Peptostreptococcus anaerobius VPI
4330]
gi|429149301|gb|EKX92281.1| TIM-barrel protein, nifR3 family [Peptostreptococcus anaerobius VPI
4330]
Length = 319
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++ LAPM + LPFRL+ + G L+Y+E + L ++ +LN +D
Sbjct: 10 NEVFLAPMAGVTDLPFRLICKELGCGLLYTEMINAKALCYDDQNTKKMLNILD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAA 149
E++ + +QI ++PE AAK + ++ +DINMGCP + G G+A
Sbjct: 63 ---------EEHPVAVQIFGSEPEYMGRAAKILNDYPNEILDINMGCPAPKVIKNGDGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTK 207
L+ P +A ++LT+++ N + PV+ KIR ++ + + + K E CGI AI VHGRT+
Sbjct: 114 LMKNPKLAADVLTSVVKNSNKPVTLKIRKGWDDDSVNAVEIAKIAEDCGIDAIAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + ++I + + IPVI NG
Sbjct: 174 EQFYSGKADWDIIGQVKNAVSIPVIGNG 201
>gi|426357501|ref|XP_004046076.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 1 [Gorilla gorilla gorilla]
gi|426357503|ref|XP_004046077.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 2 [Gorilla gorilla gorilla]
Length = 317
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ RK D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKS-RKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVHYDSIKIIK---ENMSIPVIANGDIRSLKEAENVWRIT 232
>gi|225712694|gb|ACO12193.1| tRNA-dihydrouridine synthase 4-like [Lepeophtheirus salmonis]
Length = 301
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 115/213 (53%), Gaps = 26/213 (12%)
Query: 36 APMVRMNTLPFRLLALDYGADLVYSEE-LVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94
APMVR + LPFR L L +GAD+ +S L D + +E + N+ F
Sbjct: 14 APMVRYSKLPFRRLILSHGADVAFSPMILADSFVSSSEARDNE----------------F 57
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154
+ P+E + +++Q + ++A+ V +D+N GCP+ ++L G+GA+LL P
Sbjct: 58 TSDPKEDHPLVVQFAANKVQDFVDASVLVAPYAEGVDLNCGCPQSWALKEGIGASLLQKP 117
Query: 155 DIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
+ C+++ + S + P VS KIR+ ++ TI LCK +E G+ I VHGRTK +
Sbjct: 118 EFICDVVKSTKSVIPYPDFSVSVKIRLHRDKRRTIDLCK-VENSGVDFITVHGRTKDQ-- 174
Query: 212 RHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
H + +++ ++ + L IPV+ANG K + D
Sbjct: 175 -HSDPVDLEGVKMIKDALSIPVVANGDIKSLDD 206
>gi|341889683|gb|EGT45618.1| hypothetical protein CAEBREN_21814 [Caenorhabditis brenneri]
Length = 307
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 107/205 (52%), Gaps = 20/205 (9%)
Query: 35 LAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94
LAPMVR + L FR L Y D+ Y+ + +++E+ N L+ + PL
Sbjct: 21 LAPMVRYSKLAFRQLVRLYDVDVCYTPMIYAKNFIESEKCRNSELSVCEGDRPL------ 74
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154
I+Q T DP EAA+ V +D+N GCPK + G G+ALLS P
Sbjct: 75 ----------IVQFATDDPFVLAEAAEMVYSCSTGVDLNCGCPKHDVRSKGFGSALLSKP 124
Query: 155 DIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
++ +++ I + + VS KIRV H+ T+ LC++ E+ G+ + VHGRT ++R
Sbjct: 125 ELLADMVRQTRARIPDENFSVSLKIRVNHDIEKTVDLCRKAESAGVTHLTVHGRTPSQRA 184
Query: 212 RHRNRIEMIRTLTQHLKIPVIANGG 236
+ I+ IR + + + +PVIANGG
Sbjct: 185 EPID-IKAIRIVKESVSVPVIANGG 208
>gi|156085996|ref|XP_001610407.1| dihydrouridine synthase [Babesia bovis T2Bo]
gi|154797660|gb|EDO06839.1| dihydrouridine synthase, putative [Babesia bovis]
Length = 355
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 20/215 (9%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
+ + APMV + LPFRLL Y DL Y+ L V+ E+ T D PL
Sbjct: 13 RYVAAPMVNQSELPFRLLCRRYNVDLTYTPMLHGRIFVENEKYRAVHFQTSDDDRPL--- 69
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
I Q+ D +AA+ ++ V+A+D+N+GCP+ + G G+ LL
Sbjct: 70 -------------IAQVCGDDAGTITQAARLLKGHVSAVDLNLGCPQAIAKDGHYGSFLL 116
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRTKAE 209
PD+ I++ + + I V+CKIR ++ T+ LC LE G A+ VHGR ++E
Sbjct: 117 DEPDLVTGIVSRVTREVGIAVTCKIRKVDKDSLQSTLNLCYSLEQSGCKALTVHGRHRSE 176
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+ + + IR + L+IPVIANGG + D
Sbjct: 177 KGTNVGAADWDAIRIIKSRLRIPVIANGGIETFAD 211
>gi|194765691|ref|XP_001964960.1| GF22874 [Drosophila ananassae]
gi|190617570|gb|EDV33094.1| GF22874 [Drosophila ananassae]
Length = 509
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA L Y+ + L T DP
Sbjct: 27 SPRYVVAPMVDQSELAWRMLCRRYGAHLCYTP-MYHANLFAT--------------DPKY 71
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TC ++ +++Q D ++ L+AA + A+DIN+GCP+ + G G+
Sbjct: 72 RKDALQTCAGDR-PLVIQFCGNDAQQILDAALAAQDHCDAVDINLGCPQAIAKRGHYGSF 130
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ I++TL LSIPV+CKIR+F + A TI + LEA G + VHGRT+ +
Sbjct: 131 LQDEWELLTEIVSTLHKKLSIPVTCKIRIFEDRAKTIRYAQMLEAAGCQLLTVHGRTREQ 190
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
+ + I+ + QH+KIP+ ANG
Sbjct: 191 KGPLTGVADWSYIKEVRQHIKIPMFANG 218
>gi|324517466|gb|ADY46829.1| tRNA-dihydrouridine synthase-like protein [Ascaris suum]
Length = 348
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 21/226 (9%)
Query: 15 YVLDMAN-ANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER 73
+V+D+ + + Y + APMVR + LPFR L YGADLVY+ + + + +E
Sbjct: 39 FVVDVVDDCKRMQFEYQPLFVAAPMVRYSKLPFRSLVRLYGADLVYTPMINANNFITSEE 98
Query: 74 KVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
+ T + P I+Q + DP A + V + +D+N
Sbjct: 99 CRSSEFTTNKYDSP----------------TIVQFASNDPVEFAAATELVYRYCSGVDLN 142
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCK 190
GCPK+ + GG G++LLSTP+ +++ I++ +S KIR+ ++ T+ LC+
Sbjct: 143 CGCPKRDVMRGGYGSSLLSTPERIADMIAHARRRIADTQFTISVKIRLNNDIRRTVELCR 202
Query: 191 RLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
++E+ G I VHGRT +R N E I + ++IP+IANG
Sbjct: 203 QVESAGASYICVHGRTPTQRSEPANH-EAIALVKSAMRIPIIANGA 247
>gi|195443038|ref|XP_002069246.1| GK21069 [Drosophila willistoni]
gi|194165331|gb|EDW80232.1| GK21069 [Drosophila willistoni]
Length = 519
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 107/208 (51%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA+L YS + ND+ D
Sbjct: 29 SPRYVVAPMVDQSELAWRMLCRRYGAELCYS------PMYHANLFANDVKYRKD------ 76
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TC E +I+Q D ++ LEAA + AIDIN+GCP+ + G G+
Sbjct: 77 ---ALQTCA-EDRPLIIQFCGNDSQQILEAALLAQGHCDAIDINLGCPQAIAKRGHYGSF 132
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ I++TL LSIPV+CKIR+F + TI K LEA G + VHGRT+ +
Sbjct: 133 LQDEWELLEKIVSTLHEKLSIPVTCKIRIFEDREKTIRYAKMLEAAGCQLLTVHGRTREQ 192
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
+ + IR++ + +KIP+ ANG
Sbjct: 193 KGPLTGVADWSYIRSVRKEIKIPMFANG 220
>gi|302385513|ref|YP_003821335.1| nifR3 family TIM-barrel protein [Clostridium saccharolyticum WM1]
gi|302196141|gb|ADL03712.1| TIM-barrel protein, nifR3 family [Clostridium saccharolyticum WM1]
Length = 326
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +ILAPM + LPFR L + G + +E + ++ R N+LL
Sbjct: 6 GNVTLDNNLILAPMAGVTDLPFRFLCREQGCGMAVTEMVSAKAILYKNRNTNELLK---- 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHD-VAAIDINMGCPKQFSLT 143
V P +G V LQ+ +DPE + A +VE A ID+NMGCP +
Sbjct: 62 VAPGEGPVS------------LQLFGSDPEIMADIAAQVEEGPYAFIDVNMGCPMPKIVN 109
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIG 201
G G+AL+ +A ILT+++ + PV+ K R E D + K E+CG+ A+
Sbjct: 110 NGEGSALMKDIGLAERILTSMVKAVKKPVTVKFRKGFTEEDCNAVEFAKMAESCGVAAVA 169
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + +IR + + + IPVI NG
Sbjct: 170 VHGRTREQYYSGTADWTIIRKVKEAVAIPVIGNG 203
>gi|403257051|ref|XP_003921151.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Saimiri boliviensis boliviensis]
Length = 307
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 24/221 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ K D T + D
Sbjct: 20 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKS-IKARDSEFTTNQGD------- 71
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 72 ---CP-----LIVQFAANDARLLSDAARIVSPYANGIDINCGCPQRWAMAEGYGACLINK 123
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++T + + N VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 124 PELVRDMVTQVRNQVENPGFSVSIKIRIHDDLKRTVDLCRKAEATGVSWITVHGRTVEER 183
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 184 HQPVHYDSIKIIK---ENMSIPVIANGDIRSLKEAENVWQI 221
>gi|429328565|gb|AFZ80325.1| hypothetical protein BEWA_031780 [Babesia equi]
Length = 354
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 111/226 (49%), Gaps = 31/226 (13%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
+ ++APMV + LPFRLL Y A L Y+ L + E+ T + PL
Sbjct: 18 RYVVAPMVDQSELPFRLLCRRYSAHLTYTPMLHARIFSENEKYRKTHFQTSEDDRPL--- 74
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
I Q DP+ + AA+ ++ DV+AIDIN GCP+ + G GA LL
Sbjct: 75 -------------IAQFCGNDPQTLVNAARIIKDDVSAIDINCGCPQGIARKGKYGAYLL 121
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRTKAE 209
P++ +I+ T+ + + I V+CKIR+ E+ T+ LC LEA G A+ VHGR K E
Sbjct: 122 DFPNVITSIVQTVTAQVDINVTCKIRLVEKESLQSTLNLCYALEASGCKALTVHGRDKTE 181
Query: 210 RPRHRN--RIEMIRTLTQHLKIP-----------VIANGGSKEIVD 242
+ + + E I+ + + IP VIANGG + + D
Sbjct: 182 KGVNISDCNWEAIKIIKSRVGIPGNAPSILKMSVVIANGGIESLDD 227
>gi|289422453|ref|ZP_06424296.1| tRNA-dihydrouridine synthase B [Peptostreptococcus anaerobius
653-L]
gi|289157025|gb|EFD05647.1| tRNA-dihydrouridine synthase B [Peptostreptococcus anaerobius
653-L]
Length = 319
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++ LAPM + LPFRL+ + G L+Y+E + L ++ +LN +D
Sbjct: 10 NEVFLAPMAGVTDLPFRLICKELGCGLLYTEMINAKALCYDDQNTKKMLNILD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAA 149
E++ + +QI ++PE AAK + ++ +DINMGCP + G G+A
Sbjct: 63 ---------EEHPVAVQIFGSEPEYMGRAAKILNDYPNEILDINMGCPAPKVIKNGDGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTK 207
L+ P +A ++LT ++ N + PV+ KIR ++ + + + K E CGI AI VHGRT+
Sbjct: 114 LMKNPKLAADVLTNVVKNSNKPVTLKIRKGWDDDSVNAVEIAKIAEDCGIDAIAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + ++I + + IPVI NG
Sbjct: 174 EQFYSGKADWDIIGQVKNAVSIPVIGNG 201
>gi|324510450|gb|ADY44369.1| tRNA-dihydrouridine synthase-like protein [Ascaris suum]
Length = 560
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 21/226 (9%)
Query: 15 YVLDMAN-ANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER 73
+V+D+ + + Y + APMVR + LPFR L YGADLVY+ + + + +E
Sbjct: 251 FVVDVVDDCKRMQFEYQPLFVAAPMVRYSKLPFRSLVRLYGADLVYTPMINANNFITSEE 310
Query: 74 KVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
+ T + P I+Q + DP A + V + +D+N
Sbjct: 311 CRSSEFTTNKYDSP----------------TIVQFASNDPVEFAAATELVYRYCSGVDLN 354
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCK 190
GCPK+ + GG G++LLSTP+ +++ I++ +S KIR+ ++ T+ LC+
Sbjct: 355 CGCPKRDVMRGGYGSSLLSTPERIADMIAHARRRIADTQFTISVKIRLNNDIRRTVELCR 414
Query: 191 RLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
++E+ G I VHGRT +R N E I + ++IP+IANG
Sbjct: 415 QVESAGASYICVHGRTPTQRSEPANH-EAIALVKSAMRIPIIANGA 459
>gi|71032309|ref|XP_765796.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352753|gb|EAN33513.1| hypothetical protein, conserved [Theileria parva]
Length = 327
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 108/217 (49%), Gaps = 21/217 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K I+APMV + LPFRLL Y ADL Y+ L + E N
Sbjct: 25 SPKFIVAPMVDQSELPFRLLCRRYSADLAYTPMLHAKIFSENENYRN------------- 71
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+ F T +K +I Q DP + A+ +++DV+AIDIN+GCP+ + G G+
Sbjct: 72 --IHFHTSSDDK-PLIAQFCGNDPNAFILASSYIKNDVSAIDINLGCPQGIARKGRYGSF 128
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRTK 207
LL P + I+ +L + I V+CKIR + T+ LC LEA G A+ VHGR +
Sbjct: 129 LLEYPQLINEIVRSL-TQTGINVTCKIRKVEKDCLQSTLNLCYSLEASGCKALTVHGRHR 187
Query: 208 AERPRHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+E + + I+ + + IPVIANGG + D
Sbjct: 188 SETKTRISECDWDSIKIIKSKVNIPVIANGGIETFED 224
>gi|403670095|ref|ZP_10935261.1| tRNA-dihydrouridine synthase 1 [Kurthia sp. JC8E]
Length = 340
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+I N+++LAPM + FRL ++GA LVY+E + D +VK +K +L +
Sbjct: 11 GDIEMDNRVVLAPMAGICNSAFRLTVKEFGAGLVYAEMISDKGIVKRNKKTMSML----Y 66
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
+D +N + LQI D E +EAAK V+ A IDINMGCP +
Sbjct: 67 ID------------ERENPLSLQIFGGDKENLVEAAKYVDQHTTADIIDINMGCPVNKII 114
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAI 200
GA L P+ +++ + +S PVSCK+R+ +E A+ + E G AI
Sbjct: 115 KCEAGAKWLLDPNKIYEMVSAVTDAVSKPVSCKMRIGWDEDHLFAVENAQAAERAGASAI 174
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+ ++ + ++++ + +++ IP IANG
Sbjct: 175 AMHGRTRVQQYEGKANWDILKEVKENITIPFIANG 209
>gi|403220648|dbj|BAM38781.1| uncharacterized protein TOT_010001229 [Theileria orientalis strain
Shintoku]
Length = 381
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 107/217 (49%), Gaps = 20/217 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + LPFRLL Y A L Y+ L + E N
Sbjct: 25 SPKYVVAPMVDQSELPFRLLCRRYSAHLAYTPMLHAKIFSENENYRN------------- 71
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
V F T +K I DP+ + A+ ++ DV+AIDIN+GCP+ + G G+
Sbjct: 72 --VHFHTSSDDKPLIAQFCAGNDPKTFVLASSFIKDDVSAIDINLGCPQGIARKGKYGSF 129
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ I+ L + + V+CKIR ++ T+ LC LEA G A+ VHGR +
Sbjct: 130 LLDYPDLINEIVRRLTES-GVNVTCKIRKVEKDSLQSTLNLCYSLEASGCKALTVHGRHR 188
Query: 208 AERPRHRNR--IEMIRTLTQHLKIPVIANGGSKEIVD 242
+E+ + E IR + + IPVIANGG + D
Sbjct: 189 SEKSVNIRECDWESIRIIKSRVNIPVIANGGIENFED 225
>gi|194765697|ref|XP_001964963.1| GF22885 [Drosophila ananassae]
gi|190617573|gb|EDV33097.1| GF22885 [Drosophila ananassae]
Length = 513
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +R+L YGA L Y+ + L T DP
Sbjct: 27 SPRYVVAPMVDQSELAWRMLCRRYGAHLCYTP-MYHANLFAT--------------DPKY 71
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+TC ++ +++Q D ++ L+AA + A+DIN+GCP+ + G G+
Sbjct: 72 RKDALQTCAGDR-PLVIQFCGNDAQQILDAALAAQDHCDAVDINLGCPQAIAKRGHYGSF 130
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ I +TL LSIPV+CKIR+F + A TI + LEA G + VHGRT+ +
Sbjct: 131 LQDEWELLTEIESTLHKKLSIPVTCKIRIFEDRAKTIRYAQMLEAAGCQLLTVHGRTREQ 190
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
+ + I+ + QH+KIP+ ANG
Sbjct: 191 KGPLTGVADWSYIKEVRQHIKIPMFANG 218
>gi|406890018|gb|EKD36037.1| hypothetical protein ACD_75C01667G0002 [uncultured bacterium]
Length = 312
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
A++ + + +LAP+ LPFRLL YGA SE + H LV E+ +L ++
Sbjct: 5 AHLTFESPFVLAPLAGYTNLPFRLLCRKYGAAYCVSEMISCHGLVHREQNTLKMLASVA- 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLT 143
E+ + Q+ ADPE + A+ +E + IDINMGCP +
Sbjct: 64 ---------------EERPVSFQLFGADPEVMADGAEILESYRPDMIDINMGCPVKKVTK 108
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G GAAL++ P +A IL +++ +SIPVS KIR + + + A K E CG+ AI
Sbjct: 109 RGAGAALMTDPRLAGKILKKIVARVSIPVSIKIRSGKDSSSINAAAFAKMAEDCGVAAIT 168
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VH RT A+ +I + + + +PVI NG
Sbjct: 169 VHARTWAQGFSGSIAPGIIADVKRSVSLPVIGNG 202
>gi|339441816|ref|YP_004707821.1| hypothetical protein CXIVA_07520 [Clostridium sp. SY8519]
gi|338901217|dbj|BAK46719.1| hypothetical protein CXIVA_07520 [Clostridium sp. SY8519]
Length = 318
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 110/214 (51%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +ILAPM + LPFRLL + GA L+ +E +V K + + K + L ID
Sbjct: 4 GNVTLDNNLILAPMAGVTDLPFRLLCKEQGAGLLCTE-MVSAKAIYYKNKKTEELMAID- 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPE-RALEAAKKVEHDVAAIDINMGCPKQFSLT 143
PRE + + LQ+ +DPE L AA+ + +D NMGCP +
Sbjct: 62 -------------PRE-HPVSLQLFGSDPEILGLIAAQIQDRPFDILDFNMGCPVPKVVN 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNE-ADTIALCKRLEACGIIAIG 201
G G+ L+ P +A ILT L+ PV+ K R F +E + + + K E CG+ A+
Sbjct: 108 NGEGSGLMRDPKLAERILTALVKASRKPVTVKFRKGFDDEHVNAVEIAKIAEQCGVAAVA 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + R ++IR + + + IPVI NG
Sbjct: 168 VHGRTRMQYYSGRADWDIIRQVKEAVSIPVIGNG 201
>gi|406041052|ref|ZP_11048407.1| tRNA-dihydrouridine synthase B [Acinetobacter ursingii DSM 16037 =
CIP 107286]
Length = 341
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 117/225 (52%), Gaps = 25/225 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRSLCKYFGAGHAVSEMMTADKTLRMTKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G E I QI +DPE+ EAA+ +VE+ +DINMGCP + G+
Sbjct: 62 G---------ELAPISAQIAGSDPEQLAEAARYQVENGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL ++++ + +PV+ K R+ + + + + +R E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDSVVAAVDVPVTLKTRLGFLNGHENILRVAQRAEQAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+ + + R ++I+ + Q L IPVIANG +K ++DY G
Sbjct: 173 REDMYLNTARYDLIKEVKQLLNIPVIANGDIDGPEKAKFVLDYTG 217
>gi|296209951|ref|XP_002751783.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Callithrix jacchus]
Length = 317
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKS-IKARDSEFTTNRGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARVLSDAARIVSPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++T + + + P VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVRDMVTQVRNQVESPGFSVSIKIRIHDDLKRTVDLCRKAEAIGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVHYDSIKIIK---ENMSIPVIANGDIRSLKEAENVWQIT 232
>gi|429760345|ref|ZP_19292825.1| TIM-barrel protein, nifR3 family [Veillonella atypica KON]
gi|429177679|gb|EKY18987.1| TIM-barrel protein, nifR3 family [Veillonella atypica KON]
Length = 330
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 110/215 (51%), Gaps = 21/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ K ILAPM ++ + +RLLA ++GA +V +E + + + ++LL
Sbjct: 8 GNVPIQGKAILAPMAGVSDIAYRLLAKEHGASMVCTEMVSAMGIKYKNERTHELLRMEAV 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
P+ +QI ++PE A+ KV D A +DINMGCP + +
Sbjct: 68 EHPVS----------------MQIFGSNPE-AIALGAKVVADAGADIVDINMGCPVKKVV 110
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAI 200
+ G G+AL+ TPD+A + + + +PV+ K+R+ ++ + + KR+E+ G+ A+
Sbjct: 111 SSGDGSALMKTPDLAARVAEAAVKAVDVPVTVKMRIGWDDDHINVVDFAKRIESTGVAAV 170
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + R I+ + L IPVI NG
Sbjct: 171 AVHGRTREQMYMGRADWSYIKAVKDSLSIPVIGNG 205
>gi|167754846|ref|ZP_02426973.1| hypothetical protein CLORAM_00350 [Clostridium ramosum DSM 1402]
gi|374626586|ref|ZP_09698998.1| nifR3 family putative TIM-barrel protein [Coprobacillus sp.
8_2_54BFAA]
gi|167704896|gb|EDS19475.1| TIM-barrel protein, nifR3 family [Clostridium ramosum DSM 1402]
gi|373914114|gb|EHQ45947.1| nifR3 family putative TIM-barrel protein [Coprobacillus sp.
8_2_54BFAA]
Length = 326
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 20/222 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +++APM + + FR + D+GA LVYSE + D L K ++L D
Sbjct: 5 GNVEIENPVVMAPMAGITNMAFRKIIKDFGAGLVYSEMVSDKALCYGNAKTIEMLQVDDG 64
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE--HDVAAIDINMGCPKQFSL 142
P+ +Q+ + E ++AAK ++ + IDINMGCP L
Sbjct: 65 EHPVS----------------IQLFGGEVETMVQAAKYIDKHSNCDIIDINMGCPVNKVL 108
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNE-ADTIALCKRLEACGIIAI 200
G+ LL PD I+ ++ N++ PV+ KIR F E + I + + +E G AI
Sbjct: 109 KADAGSKLLLYPDKIYEIVKGVVDNVTKPVTVKIRSGFDKEHINAIEVAQLIEKAGASAI 168
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+HGRT+++ E+IR + + +KIPVI NG K + D
Sbjct: 169 AIHGRTRSQMYEGHADWEIIRQVKEAVKIPVIGNGDIKSVED 210
>gi|355670428|ref|ZP_09057283.1| hypothetical protein HMPREF9469_00320 [Clostridium citroniae
WAL-17108]
gi|354816500|gb|EHF01088.1| hypothetical protein HMPREF9469_00320 [Clostridium citroniae
WAL-17108]
Length = 331
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N N +ILAPM + LPFRLL + GA V +E + ++ R +LL
Sbjct: 6 GNTLLENNVILAPMAGVTDLPFRLLCREQGAGCVVTEMVSAKAILYNNRNTKELL----- 60
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHD-VAAIDINMGCPKQFSLT 143
+ P+E+ + Q+ +DPE E A ++E ID+NMGCP +
Sbjct: 61 ----------QIHPQERPAAV-QLFGSDPEIMGEIAARIEDGPYDFIDVNMGCPVPKIVN 109
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ P A ILT ++ + PV+ K R N++ + + + E+CG+ A+
Sbjct: 110 NGEGSALMKDPKKAGEILTAMVRAVKKPVTVKFRKGFNDSCVNGVEFARMAESCGVAAVA 169
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + R ++IR + + +KIPVI NG
Sbjct: 170 VHGRTREQYYSGRADWDIIRRVKEAVKIPVIGNG 203
>gi|300706707|ref|XP_002995598.1| hypothetical protein NCER_101453 [Nosema ceranae BRL01]
gi|239604766|gb|EEQ81927.1| hypothetical protein NCER_101453 [Nosema ceranae BRL01]
Length = 327
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 16/205 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+LAPMV + L +R+LA YGAD+ Y+E + +++ K+N L N + +D ++
Sbjct: 13 VLAPMVGNSELAWRILARRYGADICYTEMVNCDTFIRS--KINPLSNRWYTTNKIDRPLI 70
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+ C + NK+ L+ + ++ AIDIN+GCP++ + G G+ L+
Sbjct: 71 IQICGNDVNKM------------LKVSLILQEYCDAIDINLGCPQEIARKGNYGSFLMDD 118
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
I+T L +NL +PV+CKIR+F + ++ K +E G + VHGRT+ +R +
Sbjct: 119 LLKVKEIVTVLSNNLKVPVTCKIRIFESIEKSVEYAKMIEQAGCKMLTVHGRTRDQRGLN 178
Query: 214 RN--RIEMIRTLTQHLKIPVIANGG 236
+ IR + L IPVI+NG
Sbjct: 179 TGLASWDHIRAIKASLNIPVISNGN 203
>gi|209447024|ref|NP_001129275.1| tRNA-dihydrouridine synthase 4-like [Rattus norvegicus]
gi|149051085|gb|EDM03258.1| dihydrouridine synthase 4-like (S. cerevisiae) (predicted) [Rattus
norvegicus]
Length = 321
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSV-KARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA V + IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAALIVCPYASGIDINCGCPQRWAMADGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + A TI LC+++EA G+ I VHGRT ER
Sbjct: 134 PELVLDMVRQVRNRVENPRFSVSIKIRIHDDLARTIDLCRKVEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I+MI+ +++ IP++ANG + + + V+ +
Sbjct: 194 HQPVHYDAIKMIK---ENVSIPIVANGDIRSLKEAENVWQMT 232
>gi|365829804|ref|ZP_09371395.1| hypothetical protein HMPREF1021_00159 [Coprobacillus sp. 3_3_56FAA]
gi|365264385|gb|EHM94194.1| hypothetical protein HMPREF1021_00159 [Coprobacillus sp. 3_3_56FAA]
Length = 326
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 20/222 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +++APM + + FR + D+GA LVYSE + D L K ++L D
Sbjct: 5 GNVEIENPVVMAPMAGITNMAFRKIIKDFGAGLVYSEMVSDKALCYGNAKTIEMLQVDDG 64
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSL 142
P+ +Q+ + E ++AAK ++ + IDINMGCP L
Sbjct: 65 EHPVS----------------IQLFGGEVETMVQAAKYIDKHANCDIIDINMGCPVNKVL 108
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNE-ADTIALCKRLEACGIIAI 200
G+ LL PD I+ ++ N++ PV+ KIR F E + I + + +E G AI
Sbjct: 109 KADAGSKLLLYPDKIYEIVKGVVDNVTKPVTVKIRSGFDKEHINAIEVAQLIEKAGASAI 168
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+HGRT+++ E+IR + + +KIPVI NG K + D
Sbjct: 169 AIHGRTRSQMYEGHADWEIIRQVKEAVKIPVIGNGDIKSVED 210
>gi|237735422|ref|ZP_04565903.1| transcriptional regulator [Mollicutes bacterium D7]
gi|229381167|gb|EEO31258.1| transcriptional regulator [Coprobacillus sp. D7]
Length = 331
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 20/222 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +++APM + + FR + D+GA LVYSE + D L K ++L D
Sbjct: 10 GNVEIENPVVMAPMAGITNMAFRKIIKDFGAGLVYSEMVSDKALCYGNAKTIEMLQVDDG 69
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE--HDVAAIDINMGCPKQFSL 142
P+ +Q+ + E ++AAK ++ + IDINMGCP L
Sbjct: 70 EHPVS----------------IQLFGGEVETMVQAAKYIDKHSNCDIIDINMGCPVNKVL 113
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNE-ADTIALCKRLEACGIIAI 200
G+ LL PD I+ ++ N++ PV+ KIR F E + I + + +E G AI
Sbjct: 114 KADAGSKLLLYPDKIYEIVKGVVDNVTKPVTVKIRSGFDKEHINAIEVAQLIEKAGASAI 173
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+HGRT+++ E+IR + + +KIPVI NG K + D
Sbjct: 174 AIHGRTRSQMYEGHADWEIIRQVKEAVKIPVIGNGDIKSVED 215
>gi|353236428|emb|CCA68423.1| related to tRNA dihydrouridine synthase [Piriformospora indica DSM
11827]
Length = 433
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 114/214 (53%), Gaps = 21/214 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV-----KTERKVN-DLLNTID 83
S K ++APMV + L +R+L+ YGA L Y+ +++ K KT R++N +LN +
Sbjct: 23 SPKFVVAPMVDQSELAWRVLSRRYGAHLAYTP-MINSKHFGSIRNKTFRELNFSILNGEE 81
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
+ LD +V + C DP++ LE+AK +E A+DIN+GCP+ +
Sbjct: 82 GNEKLDRPLVVQFC------------GNDPQQVLESAKILEPYCDAVDINLGCPQDIAKR 129
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
G GA L D+ I+ TL +NL+IPV+ K RVF + T+ K LE G + H
Sbjct: 130 GYYGAYLQDDWDLIYRIINTLHTNLNIPVTAKFRVFPDVEKTVEYAKMLERAGAQILTCH 189
Query: 204 GRTKAERPRHRNRIEM--IRTLTQHLKIPVIANG 235
GRT+ +R + + I+ + + + +PV ANG
Sbjct: 190 GRTREQRGVNTGLADWAKIKAVKEAVSVPVFANG 223
>gi|261332512|emb|CBH15507.1| tRNA-dihydrouridine synthase 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 435
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 128/272 (47%), Gaps = 44/272 (16%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLL----NTIDF 84
++ K ILAPMVR+ T+ FR+ GAD+V+SEE+V KL++ +R+V + ++F
Sbjct: 4 FNGKTILAPMVRVGTVGFRVFCAAQGADIVFSEEVVASKLIRCKREVRTYAGCPCSMVEF 63
Query: 85 V------DPLDGSVVFRTCPR-------EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
V + S+ F T R E ++LQ+G A+P AA DV ID
Sbjct: 64 VSYEPYKNKFKRSIAFATVARGGCNSQGEGAPVVLQLGVAEPAIGARAALLCVDDVDGID 123
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-----------IPVSCKIRVFH 180
+NMGCPK+FS+ GMGAAL+ P A IL + ++ +P+S K R+
Sbjct: 124 VNMGCPKKFSVDNGMGAALMRDPARAAAILVAVDEAVNSPEKVVARRRRVPISFKTRLL- 182
Query: 181 NEADTIA--LCKRLEACG---IIAIGVHGRTK---AERPRHRNR----IEMIRTLTQHLK 228
+ AD A L +E G + AI +H RT + P H R I +R+ K
Sbjct: 183 DTADATAQMLLSVMEGVGPDRVHAITLHARTPDQLPDSPPHYERVAATISQLRSHKLFSK 242
Query: 229 IPVIANGGSKEIVD---YGGVFSLNCAFLRNH 257
+ + NG D F + A + H
Sbjct: 243 VCFVLNGSISSRGDGRRKAAQFGFDAAMIARH 274
>gi|71747358|ref|XP_822734.1| tRNA-dihydrouridine synthase 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832402|gb|EAN77906.1| tRNA-dihydrouridine synthase 2, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 435
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 128/272 (47%), Gaps = 44/272 (16%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLL----NTIDF 84
++ K ILAPMVR+ T+ FR+ GAD+V+SEE+V KL++ +R+V + ++F
Sbjct: 4 FNGKTILAPMVRVGTVGFRVFCAAQGADIVFSEEVVASKLIRCKREVRTYTGCPCSMVEF 63
Query: 85 V------DPLDGSVVFRTCPR-------EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
V + S+ F T R E ++LQ+G A+P AA DV ID
Sbjct: 64 VSYEPYKNKFKRSIAFATVARGGCNSQGEGAPVVLQLGVAEPAIGARAALLCVDDVDGID 123
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-----------IPVSCKIRVFH 180
+NMGCPK+FS+ GMGAAL+ P A IL + ++ +P+S K R+
Sbjct: 124 VNMGCPKKFSVDNGMGAALMRDPARAAAILVAVDEAVNSPEKVVARRRRVPISFKTRLL- 182
Query: 181 NEADTIA--LCKRLEACG---IIAIGVHGRTK---AERPRHRNR----IEMIRTLTQHLK 228
+ AD A L +E G + AI +H RT + P H R I +R+ K
Sbjct: 183 DTADATAQMLLSVMEGVGPDRVHAITLHARTPDQLPDSPPHYERAAATISQLRSHKLFSK 242
Query: 229 IPVIANGGSKEIVD---YGGVFSLNCAFLRNH 257
+ + NG D F + A + H
Sbjct: 243 VCFVLNGSISSRGDGRRKAAQFGFDAAMIARH 274
>gi|409084063|gb|EKM84420.1| hypothetical protein AGABI1DRAFT_67813 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 436
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 19/217 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE-----RKVNDLLN 80
N+ S K I+APMV + L +R L+ YGA +VYS +++ K+ T+ R++N N
Sbjct: 16 NVLGSPKYIVAPMVDQSELAWRKLSRRYGAQVVYSP-MINAKMFATQSNKHYREIN--FN 72
Query: 81 TIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
T+ + + D +V +++Q DP++ L +AK +E AIDIN+GCP+
Sbjct: 73 TV-YGEEGDLTV--------DRPLVVQFCANDPDQLLASAKIIELHCDAIDINLGCPQDI 123
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200
+ G GA L D+ ++ L +NLSIPV+ K RVF T+A K LE+ G +
Sbjct: 124 AKKGKYGAYLQDDWDLIYKLINILHTNLSIPVTAKFRVFPTVEKTVAYAKMLESAGAQIL 183
Query: 201 GVHGRTKAERPRHRNRIEM--IRTLTQHLKIPVIANG 235
HGR + +R + + IR + + + +PV ANG
Sbjct: 184 TCHGRIREQRGVNTGLADWTKIRAVKEAVSVPVFANG 220
>gi|378697186|ref|YP_005179144.1| tRNA-dihydrouridine synthase B [Haemophilus influenzae 10810]
gi|301169704|emb|CBW29305.1| tRNA-dihydrouridine synthase B [Haemophilus influenzae 10810]
Length = 326
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ ++ + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNSVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTGA 218
>gi|189183831|ref|YP_001937616.1| NifR3 protein [Orientia tsutsugamushi str. Ikeda]
gi|189180602|dbj|BAG40382.1| NifR3 protein [Orientia tsutsugamushi str. Ikeda]
Length = 320
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 24/217 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI S +ILAPM + LPFR L +GA LV SE + +++ RK ++ +
Sbjct: 6 GNIELSAPVILAPMSGVTDLPFRKLVKQFGAGLVVSEMVASRAMIQETRK--SMMKSAII 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
+ + GS V Q+ +P+ +AAK + D+ A IDIN GCP + +
Sbjct: 64 ENDITGSCV-------------QLAGCEPDVIADAAK-MNQDMGAQIIDINFGCPAKKVV 109
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN----EADTIALCKRLEACGII 198
G G+AL+ +A IL + ++SIPV+ K+R + A+ IA K E CGI
Sbjct: 110 GGYAGSALMRDEILAAKILAETVKSVSIPVTLKMRTGWDVSCRNANIIA--KIAEECGIQ 167
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
I VHGRT+ + ++ IR + + +KIPV+ANG
Sbjct: 168 MITVHGRTRCQFYSGKSDWAFIRKVKESIKIPVVANG 204
>gi|167381618|ref|XP_001735786.1| tRNA-dihydrouridine synthase [Entamoeba dispar SAW760]
gi|165902070|gb|EDR27991.1| tRNA-dihydrouridine synthase, putative [Entamoeba dispar SAW760]
Length = 366
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 6/176 (3%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+LAPMV + T+ +R +ALD GA+ V++EELV +L + +R N L I ++ D V+
Sbjct: 28 VLAPMVGICTVSYRTMALDAGANAVFTEELVSKRLCECKRVENSGL--IQYIHKND--VM 83
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
P +++K ILQ+GT D E +++ ++ +V IDIN+GC FS G MG AL+S
Sbjct: 84 LTLKPEQQSKTILQLGTFDVESSIKCVSLIK-EVCGIDINLGCGMWFSTKGEMGQALVSN 142
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
D I+ L+ L P+S KIR+ +T+ + L + GI I +HGR E
Sbjct: 143 RDKLEKIVKALV-KLGKPISAKIRLQQTHEETLEFIQWLYSLGISIISLHGRHHKE 197
>gi|222148571|ref|YP_002549528.1| nitrogen regulation protein [Agrobacterium vitis S4]
gi|221735557|gb|ACM36520.1| nitrogen regulation protein [Agrobacterium vitis S4]
Length = 332
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 131/277 (47%), Gaps = 31/277 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
A++ N+++LAPM + LPFR LA +GA LV +E + +LV N +
Sbjct: 13 ASVAIRNRVVLAPMSGVTDLPFRQLAFRHGAGLVVTEMVASRELV---------FNAAES 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
L G+ + P ++Q+ DP EAAK E + A I DINMGCP + +
Sbjct: 64 WSRLKGAGL---TPH-----MVQLAGRDPHWMAEAAKIAEANGADIIDINMGCPAKKVIG 115
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI---ALCKRLEACGIIAI 200
G G+AL+ P+IA ++ + +SIPV+ K+R+ + +D+I L +R + G+ AI
Sbjct: 116 GYAGSALMREPEIALAMIEATVKAVSIPVTVKMRLGWD-SDSINAPDLSRRAQDAGVQAI 174
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFSLNCAFL 254
VHGRT+ + R + I + + IP+IAN G ++EI+ G ++
Sbjct: 175 TVHGRTRMQFYEGRADWDAIAAVRDAIYIPLIANGDIDTLGDAQEILRRSGADAIMLGRA 234
Query: 255 RNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLF 291
P +L H E+P Y +
Sbjct: 235 CQGRPWH---AGVLAGHAPPSAEEIPAIAVAHYRAML 268
>gi|242208769|ref|XP_002470234.1| predicted protein [Postia placenta Mad-698-R]
gi|220730684|gb|EED84537.1| predicted protein [Postia placenta Mad-698-R]
Length = 260
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 18/213 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMV + LPFR L Y A LVY++ L+ +L+ + L + +P D VV
Sbjct: 2 IAAPMVNQSDLPFRRLVRRYNATLVYTQMLLSDRLLNDHDYLQFHLRGLG--EPNDRPVV 59
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+ C DPE + A K+V+ AID N+GCP++ + GA LL
Sbjct: 60 VQLCGN------------DPELVVRAGKQVQSHCDAIDFNLGCPQEAARDAHYGAYLLGQ 107
Query: 154 PD--IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
D + NI ++ ++L++PVS K+R+ + T+ L +RLE G + +H RT + R
Sbjct: 108 NDWPLVENIAASMSNSLTVPVSAKLRLCQPASATLDLARRLEHAGASWVTLHARTVSVRR 167
Query: 212 RHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
R + +E I+TL +L IPVI+NG + D
Sbjct: 168 RRQGAADLEQIKTLKDNLSIPVISNGNVRVWED 200
>gi|416893549|ref|ZP_11924699.1| tRNA-dihydrouridine synthase B [Aggregatibacter aphrophilus ATCC
33389]
gi|347813839|gb|EGY30492.1| tRNA-dihydrouridine synthase B [Aggregatibacter aphrophilus ATCC
33389]
Length = 320
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 25/224 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I+LAPM + PFR + YGA L +SE +++T V +
Sbjct: 10 NRILLAPMAGITDQPFRRICATYGAGLTFSE----------------MMSTNPHVWHTEK 53
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +E +QI +DP+ +AA+ VE+ IDINMGCP + G+A
Sbjct: 54 SKLRLAHHQEAGINAVQIAGSDPDEMAQAAQVNVEYGAQIIDINMGCPAKKVNRKMAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL P + IL T++ ++ +PV+ KIR + + + + K E GI A+ +HGRT+
Sbjct: 114 LLQYPQLVRQILETVVKSVEVPVTLKIRTGWDLENRNCVEIAKIAEQSGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
A + E IR + Q + IPVIANG +K ++DY G
Sbjct: 174 ACKFEGDAEYEHIRLVKQQVSIPVIANGDITSAQKAKAVLDYTG 217
>gi|417843241|ref|ZP_12489318.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus M21127]
gi|341950475|gb|EGT77064.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus M21127]
Length = 326
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGKAEYDNIKAVKQAITIPVIANGDIDSARKAKFVLDYTGA 218
>gi|426200879|gb|EKV50802.1| hypothetical protein AGABI2DRAFT_181833 [Agaricus bisporus var.
bisporus H97]
Length = 446
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 29/222 (13%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE-----RKVNDLLN 80
N+ S K I+APMV + L +R L+ YGA +VYS +++ K+ T+ R++N N
Sbjct: 16 NVLGSPKYIVAPMVDQSELAWRKLSRRYGAQVVYSP-MINAKMFATQSNKHYREIN--FN 72
Query: 81 TIDFVDPLDGSVVFRTCPREKN-----KIILQIGTADPERALEAAKKVEHDVAAIDINMG 135
T+ C E + +++Q DP++ L +AK +E AIDIN+G
Sbjct: 73 TV--------------CGEEGDLTVDRPLVVQFCANDPDQLLASAKIIEPHCDAIDINLG 118
Query: 136 CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195
CP+ + G GA L D+ ++ L +NLSIPV+ K RVF T+A K LE+
Sbjct: 119 CPQDIAKKGKYGAYLQDDWDLIYKLINILHTNLSIPVTAKFRVFPTVEKTVAYAKMLESA 178
Query: 196 GIIAIGVHGRTKAERPRHRNRIEM--IRTLTQHLKIPVIANG 235
G + HGR + +R + + IR + + + +PV ANG
Sbjct: 179 GAQILTCHGRIREQRGVNTGLADWTKIRAVKEAVSVPVFANG 220
>gi|403419264|emb|CCM05964.1| predicted protein [Fibroporia radiculosa]
Length = 495
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 109/209 (52%), Gaps = 12/209 (5%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + L +R L+ YGA LVY+ +++ K+ + + + +
Sbjct: 28 SPKYVVAPMVDQSELAWRKLSRKYGAQLVYTP-MINAKMFAQDMRRQYREQAFNTTFGEE 86
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
G E +I+Q DPE+ L +A+ VE A+D+N+GCP+ + G G+
Sbjct: 87 GGP-------EDRPLIVQFCANDPEQLLVSARAVEGYCDAVDVNLGCPQDIARRGHYGSF 139
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ N++ TL NL++PV+ K RVF T+ K LE G + HGRT+ +
Sbjct: 140 LQDEWDLIYNLINTLHRNLNVPVTAKFRVFSTVEKTVEYAKMLERAGAQILTCHGRTREQ 199
Query: 210 RPRHRNRI---EMIRTLTQHLKIPVIANG 235
R H++ + E IR + + + +PV ANG
Sbjct: 200 R-GHKSGLADWEKIRAVKEAVSVPVFANG 227
>gi|359428254|ref|ZP_09219290.1| putative tRNA-dihydrouridine synthase [Acinetobacter sp. NBRC
100985]
gi|358236270|dbj|GAB00829.1| putative tRNA-dihydrouridine synthase [Acinetobacter sp. NBRC
100985]
Length = 341
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRSLCKYFGAGHAVSEMMTADKTLRMSKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G E I QI +DPE+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 G---------ELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL T+++ + +PV+ K R+ + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDTVVAAVDVPVTLKTRLGFLNGHENILRVAKRAEQAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R E+I+ + + + IP+IANG +K ++DY G
Sbjct: 173 REDMYLNTARYELIKQVKETIHIPLIANGDIDSPEKAKYVLDYTGA 218
>gi|251793182|ref|YP_003007910.1| tRNA-dihydrouridine synthase B [Aggregatibacter aphrophilus NJ8700]
gi|422336717|ref|ZP_16417690.1| tRNA-dihydrouridine synthase B [Aggregatibacter aphrophilus F0387]
gi|247534577|gb|ACS97823.1| tRNA-dihydrouridine synthase B [Aggregatibacter aphrophilus NJ8700]
gi|353346029|gb|EHB90316.1| tRNA-dihydrouridine synthase B [Aggregatibacter aphrophilus F0387]
Length = 320
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 25/224 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I+LAPM + PFR + YGA L +SE +++T V +
Sbjct: 10 NRILLAPMAGITDQPFRRICATYGAGLTFSE----------------MMSTNPQVWHTEK 53
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +E +QI +DP+ +AA+ VE+ IDINMGCP + G+A
Sbjct: 54 SKLRLAHHQEAGINAVQIAGSDPDEMAQAAQVNVEYGAQIIDINMGCPAKKVNRKMAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL P + IL T++ ++ +PV+ KIR + + + + K E GI A+ +HGRT+
Sbjct: 114 LLQYPQLVRQILETVVKSVEVPVTLKIRTGWDLENRNCVEIAKIAEQSGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
A + E IR + Q + IPVIANG +K ++DY G
Sbjct: 174 ACKFEGEAEYEHIRLVKQQVSIPVIANGDITSAQKAKAVLDYTG 217
>gi|167540353|ref|XP_001741843.1| tRNA-dihydrouridine synthase [Entamoeba dispar SAW760]
gi|165893431|gb|EDR21688.1| tRNA-dihydrouridine synthase, putative [Entamoeba dispar SAW760]
Length = 355
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 100/176 (56%), Gaps = 6/176 (3%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+LAPMV + T+ +R +ALD GA V++EELV +L + +R N L I ++ D V+
Sbjct: 17 VLAPMVGICTVSYRTMALDAGASAVFTEELVSKRLCECKRVENSGL--IQYIHKND--VM 72
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
P +++K ILQ+GT D E +++ ++ +V IDIN+GC FS G MG AL+S
Sbjct: 73 LTLKPEQQSKTILQLGTFDVESSIKCVSLIK-EVCGIDINLGCGMWFSTKGEMGQALVSN 131
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
D I+ L+ L P+S KIR+ +T+ + L + GI I +HGR E
Sbjct: 132 RDKLEKIVKALV-KLGKPISAKIRLQQTHEETLEFIQWLYSLGISIISLHGRHHKE 186
>gi|291239208|ref|XP_002739522.1| PREDICTED: dihydrouridine synthase 4-like [Saccoglossus
kowalevskii]
Length = 367
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 20/219 (9%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L YG D+ ++ +V +K+ + ++ +T PL
Sbjct: 35 ISAPMVRYSKLAFRTLVRKYGCDVTFTPMIVSDSFIKSIKARDNEFSTHKGDQPL----- 89
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
I+Q + + + A + + +D+N GCP+++++ G GA L+
Sbjct: 90 -----------IVQFAANNTKDFVTATELIAPFADGVDLNCGCPQRWAMANGFGANLIKH 138
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ I + VS KIR+ HN DT+ LC++ E G+ I VHGRT +R
Sbjct: 139 PELVKDMVQQTRNKIQDEKFSVSIKIRLRHNLRDTLDLCQKAEHAGVSWITVHGRTTEQR 198
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
N E I+ + ++L IPVIANG K + D V L
Sbjct: 199 TEPVN-YEDIKIIKENLSIPVIANGDVKSLKDVNRVHEL 236
>gi|260549656|ref|ZP_05823873.1| tRNA-dihydrouridine synthase B [Acinetobacter sp. RUH2624]
gi|424054713|ref|ZP_17792237.1| hypothetical protein W9I_03135 [Acinetobacter nosocomialis Ab22222]
gi|425740608|ref|ZP_18858776.1| TIM-barrel protein, nifR3 family [Acinetobacter baumannii WC-487]
gi|260407173|gb|EEX00649.1| tRNA-dihydrouridine synthase B [Acinetobacter sp. RUH2624]
gi|407439462|gb|EKF45987.1| hypothetical protein W9I_03135 [Acinetobacter nosocomialis Ab22222]
gi|425494631|gb|EKU60830.1| TIM-barrel protein, nifR3 family [Acinetobacter baumannii WC-487]
Length = 341
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMTKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DPE+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 GELA---------PISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL +I+ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDAVIAAVDVPVTLKTRLGFLNGQENILRVAKRAEEAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R E+I+ + + + IPVIANG +K ++DY G
Sbjct: 173 REDMYLNTARYELIKHVKELINIPVIANGDIDSPEKAKYVLDYTGA 218
>gi|405961217|gb|EKC27051.1| tRNA-dihydrouridine synthase 4-like protein [Crassostrea gigas]
Length = 317
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + LPFR L Y DL ++ ++ + V + V D
Sbjct: 24 ICAPMVRYSKLPFRTLVRKYNCDLAFTPMIISNSFVHS-------------VKARDSE-- 68
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
F TC ++ +I+Q + AA+ V +D+N GCP+++++ G GA L+
Sbjct: 69 FTTCSTDR-PLIVQFAANNGNDLAAAAEIVSPYSDGVDLNCGCPQRWAMAEGYGACLIKK 127
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + VS KIR+ ++ +T+ LC++ E G+ I VHGRTK +R
Sbjct: 128 PELVRDMVNQTRARVCSSDFTVSIKIRIHNDLRETVDLCQKAEHAGVSWIAVHGRTKDQR 187
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
N+ + I+T+ + L IPVIANG K + D
Sbjct: 188 AEPVNK-DAIKTIKESLSIPVIANGDIKSLQD 218
>gi|399924235|ref|ZP_10781593.1| nifR3 family TIM-barrel protein [Peptoniphilus rhinitidis 1-13]
Length = 310
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 17/203 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
ILAPM + FR +A + GAD+ +E + LV +K DLL+
Sbjct: 4 ILAPMAGYTDIAFREVATEKGADITVTEMVSAMALVYQNKKTIDLLDI------------ 51
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLS 152
PREK K+ +QI +DP+ EAA + +++ + +DINMGCP + G+ LLS
Sbjct: 52 ---SPREK-KVSVQIFGSDPKIMGEAASILNDYNFSYVDINMGCPAPKIVKNKSGSYLLS 107
Query: 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR 212
P + +I+ +++ N PVS K+R +I K +EA G + VHGRT+ E
Sbjct: 108 DPSLVYDIVKSVVENSKKPVSVKVRKGIGGMSSIKAIKNIEAAGASFVTVHGRTREEYYT 167
Query: 213 HRNRIEMIRTLTQHLKIPVIANG 235
+ + I+ + +++KIPVI NG
Sbjct: 168 GKADWDYIKEVKENVKIPVIGNG 190
>gi|406989941|gb|EKE09649.1| hypothetical protein ACD_16C00129G0001 [uncultured bacterium]
Length = 291
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 110/217 (50%), Gaps = 19/217 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
A+I + +ILAPM + +PFR L GA LV SE + H +++ R+
Sbjct: 6 AHIKLEDGVILAPMSGVTDMPFRRLVKRQGASLVISEMIASHAMIRQTRQ---------- 55
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
S++ E+ + +Q+ +PE EAAK E AAI DINMGCP++ +
Sbjct: 56 ------SLLMAKHTPEEYPMAVQLVGCEPEVMAEAAKLNEDWGAAILDINMGCPQKKVVN 109
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G+AL+ +A I+ + ++IPV+ K+R +E + AL K E CGI +
Sbjct: 110 EYAGSALMKDEVLAAKIIEATVKAVNIPVTLKMRTGWDEKNRNAPALAKIAEECGIRMLT 169
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK 238
+HGRT+ + R + IR + +KIPVI NG K
Sbjct: 170 IHGRTRCQLYRGKADWSFIRKVKDAVKIPVIGNGDVK 206
>gi|126340537|ref|XP_001363271.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Monodelphis
domestica]
Length = 317
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 24/212 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 ICAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVRST-KARDSEFTTNKGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D + +AA+ V IDIN GCP+++++T G GA L++
Sbjct: 82 ---CP-----LIVQFAANDAQLLSDAARIVCPYANGIDINCGCPQRWAITEGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + S + P VS KIR+ + TI LC++ EA G+ I VHGR ER
Sbjct: 134 PELVQDMVKQVRSQVENPNFSVSIKIRIHDDLTRTIDLCRKAEATGVSWITVHGRNIEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
P H + I++I+ ++L IP+IANG K +
Sbjct: 194 HQPVHYDAIKIIK---ENLSIPIIANGDIKSL 222
>gi|308485393|ref|XP_003104895.1| hypothetical protein CRE_24419 [Caenorhabditis remanei]
gi|308257216|gb|EFP01169.1| hypothetical protein CRE_24419 [Caenorhabditis remanei]
Length = 304
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 21/220 (9%)
Query: 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLL 79
++ N N N K LAPMVR + L FR L Y D+ Y+ + +++E+ N L
Sbjct: 3 SDKNDENANRP-KFYLAPMVRYSKLAFRQLVRLYDVDVCYTPMIYAKNFIESEKCRNSEL 61
Query: 80 NTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQ 139
+ + PL I+Q T DP EAA+ V +D+N GCPK
Sbjct: 62 SICERDSPL----------------IVQFATDDPIVLAEAAEMVYGCSTGVDVNCGCPKH 105
Query: 140 FSLTGGMGAALLSTPDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACG 196
+ G G+ALL+ P++ +++ IS+ VS KIRV + T+ LC++ E+ G
Sbjct: 106 DVRSKGFGSALLNKPELLADMIRQTRARISDTEFSVSLKIRVNSDIERTVDLCRKAESAG 165
Query: 197 IIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
+ + VHGRT ++ + I+ IR + + + +PVIANGG
Sbjct: 166 VTHLTVHGRTPSQHAEPID-IQAIRIVKESVSVPVIANGG 204
>gi|260556608|ref|ZP_05828826.1| tRNA-dihydrouridine synthase B [Acinetobacter baumannii ATCC 19606
= CIP 70.34]
gi|260409867|gb|EEX03167.1| tRNA-dihydrouridine synthase B [Acinetobacter baumannii ATCC 19606
= CIP 70.34]
gi|452948024|gb|EME53505.1| tRNA-dihydrouridine synthase B [Acinetobacter baumannii MSP4-16]
Length = 341
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMTKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DPE+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 GELA---------PISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL +I+ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDAVIAAVDVPVTLKTRLGFLNGQENILRVAKRAEEAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R E+I+ + + + IPVIANG +K ++DY G
Sbjct: 173 REDMYLNTARYELIKHVKELIHIPVIANGDIDSPEKAKYVLDYTGA 218
>gi|269103648|ref|ZP_06156345.1| tRNA dihydrouridine synthase B [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163546|gb|EEZ42042.1| tRNA dihydrouridine synthase B [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 348
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N++I+APM + PFR L L YGA + SE + + L KT + +N +++ +
Sbjct: 37 NQLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPDLWKTSKSMNRMVH--------E 88
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G R+ +QI +DP+ EAA+ VE+ IDINMGCP + G+
Sbjct: 89 GESGIRS---------VQIAGSDPKLMAEAAQFSVENGAQIIDINMGCPAKKVNKRLAGS 139
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL P + IL ++ + +PV+ K R + + + + K E CGI A+ +HGRT
Sbjct: 140 ALLQYPHLIEEILKEVVGAVDVPVTLKTRTGWDTENRNCVDIAKLAEQCGIQALALHGRT 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
KA + + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 200 KACMYKGEAEYDYIRAVKQAVTIPVIANGDIDSPEKARFVLDYTGADAL 248
>gi|156935780|ref|YP_001439696.1| tRNA-dihydrouridine synthase B [Cronobacter sakazakii ATCC BAA-894]
gi|389842599|ref|YP_006344683.1| tRNA-dihydrouridine synthase B [Cronobacter sakazakii ES15]
gi|424802049|ref|ZP_18227591.1| tRNA dihydrouridine synthase B [Cronobacter sakazakii 696]
gi|429089212|ref|ZP_19151944.1| tRNA dihydrouridine synthase B [Cronobacter universalis NCTC 9529]
gi|429117866|ref|ZP_19178784.1| tRNA dihydrouridine synthase B [Cronobacter sakazakii 701]
gi|156534034|gb|ABU78860.1| hypothetical protein ESA_03650 [Cronobacter sakazakii ATCC BAA-894]
gi|387853075|gb|AFK01173.1| tRNA-dihydrouridine synthase B [Cronobacter sakazakii ES15]
gi|423237770|emb|CCK09461.1| tRNA dihydrouridine synthase B [Cronobacter sakazakii 696]
gi|426320995|emb|CCK04897.1| tRNA dihydrouridine synthase B [Cronobacter sakazakii 701]
gi|426509015|emb|CCK17056.1| tRNA dihydrouridine synthase B [Cronobacter universalis NCTC 9529]
Length = 327
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 16 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPEVWASDKSRLRMVHVD------- 68
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE EAA+ V++ IDINMGCP + G+A
Sbjct: 69 ---------EPGIRTVQIAGSVPEEMAEAARINVDNGAQIIDINMGCPAKKVNRKLAGSA 119
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRTK 207
LL PD+ +ILT +++ + +PV+ KIR + A+ + + + E CGI A+ +HGRT+
Sbjct: 120 LLQYPDLVKSILTAVVNAVDVPVTLKIRTGWDPANRNCVEIAQLAEECGIQALTIHGRTR 179
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + + IRT+ Q + IPVIANG ++ ++DY G +L
Sbjct: 180 ACLFQGNAEYDSIRTVKQKVSIPVIANGDITSPHKARAVLDYTGADAL 227
>gi|390933233|ref|YP_006390738.1| nifR3 family TIM-barrel protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389568734|gb|AFK85139.1| TIM-barrel protein, nifR3 family [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 334
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 20/214 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N + LAPM + P+R + + G Y+E +V K + + + L ID
Sbjct: 18 GDVKIKNNVFLAPMAGVTDKPYRRICSEMGCGFAYTE-MVSAKGLYYGSENTEFLTDID- 75
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLT 143
+ + LQI +DP E AK++ + IDINMGCP +
Sbjct: 76 ---------------DDENVALQIFGSDPYIMGEIAKRLNASNAKTIDINMGCPTPKIVK 120
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ P++A +++ ++ NLS PV+ KIR ++A + + + K E CG+ A+
Sbjct: 121 NGDGSALMLKPELAESVIKAVVKNLSKPVTVKIRKGWDDAHVNAVEIAKMAENCGVKAVA 180
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + R ++I+ + +LKIPVI NG
Sbjct: 181 VHGRTREQFYSGRADWDIIKKVKDNLKIPVIGNG 214
>gi|242011621|ref|XP_002426546.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
gi|212510683|gb|EEB13808.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
Length = 332
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 25/210 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER-KVNDLLNTIDFVDPLDGSV 92
+ APMVR + L FR L Y DL ++ ++ +K+E+ ++N+
Sbjct: 15 VCAPMVRYSKLEFRSLVRQYDCDLCFTPMIMADSFIKSEKARINEF-------------- 60
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
T + +I+Q + EAAK V +D+N GCP+++++ G+GA LLS
Sbjct: 61 ---TTSSNDSPVIVQFAANNTFDFSEAAKLVFPFSDGVDLNCGCPQRWAMKIGIGAQLLS 117
Query: 153 TP----DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
P DI N+ + N S VS K+R+ ++ T+ LCK+LE G+ + +HGRTK
Sbjct: 118 EPETIKDIVLNVKNQISCNYS--VSVKLRLLNDIKSTVDLCKKLEKTGVTFLTIHGRTKE 175
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSK 238
+R N I I+ + ++IP+IANG K
Sbjct: 176 QRSEPVN-IAAIKDIVDSVQIPIIANGDVK 204
>gi|183230428|ref|XP_648510.2| dihydrouridine synthase (Dus) family protein [Entamoeba histolytica
HM-1:IMSS]
gi|169802927|gb|EAL43123.2| dihydrouridine synthase (Dus) family protein [Entamoeba histolytica
HM-1:IMSS]
Length = 366
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+LAPMV + T+ +R +ALD GA V++EELV +L + +R N I ++ D V+
Sbjct: 28 VLAPMVGICTISYRSMALDAGASAVFTEELVSKRLCECKRVENS--GIIQYIHKND--VM 83
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
P +++K ILQ+GT D E +++ ++ +V IDIN+GC FS G MG AL+
Sbjct: 84 LTLKPEQQSKTILQLGTFDVESSVKCVSLIQ-EVCGIDINLGCGMWFSTKGEMGQALVDN 142
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
D I+ L+ LS P+S KIR+ +T+ + L + GI I +HGR E
Sbjct: 143 RDKLEKIVKALVG-LSKPISAKIRLQQTHEETLEFIQWLYSLGISIISLHGRHHKE 197
>gi|449702072|gb|EMD42776.1| tRNA-dihydrouridine synthase, putative [Entamoeba histolytica KU27]
Length = 366
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+LAPMV + T+ +R +ALD GA V++EELV +L + +R N I ++ D V+
Sbjct: 28 VLAPMVGICTISYRSMALDAGASAVFTEELVSKRLCECKRVENS--GIIQYIHKND--VM 83
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
P +++K ILQ+GT D E +++ ++ +V IDIN+GC FS G MG AL+
Sbjct: 84 LTLKPEQQSKTILQLGTFDVESSVKCVSLIQ-EVCGIDINLGCGMWFSTKGEMGQALVDN 142
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
D I+ L+ LS P+S KIR+ +T+ + L + GI I +HGR E
Sbjct: 143 RDKLEKIVKALVG-LSKPISAKIRLQQTHEETLEFIQWLYSLGISIISLHGRHHKE 197
>gi|323456942|gb|EGB12808.1| hypothetical protein AURANDRAFT_19007, partial [Aureococcus
anophagefferens]
Length = 154
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 1/131 (0%)
Query: 35 LAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94
L PMVR N+ R+LAL+ GAD+VYSEEL+ ++ T+ ++N+ L T D++D SV
Sbjct: 22 LGPMVRANSTALRILALESGADMVYSEELIARRMDVTQFRLNETLGTADWLDANGKSVAL 81
Query: 95 RTCP-REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R P RE+ ++++Q G AD + A AA+ V + +D+NMGCPK FS GMG+AL+
Sbjct: 82 RVDPARERGRLVVQFGAADGDVAARAAEAVARYASGVDLNMGCPKPFSAGNGMGSALMRD 141
Query: 154 PDIACNILTTL 164
P A +I+ +
Sbjct: 142 PARAASIVKAM 152
>gi|417792117|ref|ZP_12439518.1| tRNA-dihydrouridine synthase B [Cronobacter sakazakii E899]
gi|449309894|ref|YP_007442250.1| tRNA-dihydrouridine synthase B [Cronobacter sakazakii SP291]
gi|333953806|gb|EGL71707.1| tRNA-dihydrouridine synthase B [Cronobacter sakazakii E899]
gi|449099927|gb|AGE87961.1| tRNA-dihydrouridine synthase B [Cronobacter sakazakii SP291]
Length = 321
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPEVWASDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE EAA+ V++ IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMAEAARINVDNGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRTK 207
LL PD+ +ILT +++ + +PV+ KIR + A+ + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKSILTAVVNAVDVPVTLKIRTGWDPANRNCVEIAQLAEECGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + + IRT+ Q + IPVIANG ++ ++DY G +L
Sbjct: 174 ACLFQGNAEYDSIRTVKQKVSIPVIANGDITSPHKARAVLDYTGADAL 221
>gi|449546042|gb|EMD37012.1| hypothetical protein CERSUDRAFT_114910 [Ceriporiopsis subvermispora
B]
Length = 479
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 10/208 (4%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + L +R L+ YGA L Y+ +++ K+ D+ +T +
Sbjct: 26 SPKYVVAPMVDQSELAWRTLSRRYGAQLAYTP-MINVKMYA------DMSHTTFREKNFN 78
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+ CP ++ +I+Q+ DPE+ L AK +E AIDIN+GCP+ + G G+
Sbjct: 79 TVLGEEGCPADR-PLIVQLCGHDPEKMLATAKCLEAHCDAIDINLGCPQDVARRGHYGSF 137
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ ++ TL NL +PV+ K RVF T+A + LE G + HGRT+ +
Sbjct: 138 LQDEWDLIYELINTLHKNLKVPVTAKFRVFPTVEKTVAYAQMLERAGAQILTCHGRTREQ 197
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
R + + IR + Q +K+PV ANG
Sbjct: 198 RAQKAGLADWAKIRAVKQAVKVPVFANG 225
>gi|348667101|gb|EGZ06927.1| hypothetical protein PHYSODRAFT_289018 [Phytophthora sojae]
Length = 369
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 34/217 (15%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYS--------EELVDHKLVKTERKVNDLLNT 81
S K I+APMV + L FR+L GAD Y+ E +++ ER + D
Sbjct: 15 SPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLFAESAEYREKMFERHIQD---- 70
Query: 82 IDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFS 141
+++Q DP+ L AAK VE A+D+N+GCP+ +
Sbjct: 71 --------------------RPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIA 110
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIG 201
G G+ L+ D I+ TL +NL++PV+ KIRVF ++ +T+ L+ G +
Sbjct: 111 RKGNYGSFLMHDKDTVQAIVETLSANLNVPVTVKIRVFPDDNETLEFADMLQKAGCDLLT 170
Query: 202 VHGRTKAERPRHRNRI--EMIRTLTQHLKIPVIANGG 236
VHGRTK + ++IR + + L IPVIANGG
Sbjct: 171 VHGRTKEMNKTAVREVDWDIIRRIKERLTIPVIANGG 207
>gi|302676381|ref|XP_003027874.1| hypothetical protein SCHCODRAFT_60830 [Schizophyllum commune H4-8]
gi|300101561|gb|EFI92971.1| hypothetical protein SCHCODRAFT_60830 [Schizophyllum commune H4-8]
Length = 282
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 111/213 (52%), Gaps = 14/213 (6%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMV + LPFR+L YGA Y++ L K+ LN D+++ +
Sbjct: 9 IAAPMVNQSDLPFRMLVRKYGATATYTQMLNPDKI----------LNDRDYLEFHQRDLE 58
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+ + + I+Q+ D E ++AAK+V+ ID+N+GCP+ + G GA LL
Sbjct: 59 LASNAPDGSPTIVQVCGNDTELVVQAAKRVQTLCQGIDLNLGCPQDAAREGHYGAYLLGQ 118
Query: 154 PD--IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
D + +I+++L +L+IPVS K+R+ T+A LEA G + +H RT + R
Sbjct: 119 KDWPLVNDIVSSLSYSLTIPVSAKLRLCQPSIKTLAFATALEASGASWVTLHPRTVSARR 178
Query: 212 RHRNR--IEMIRTLTQHLKIPVIANGGSKEIVD 242
R + +E++R L L +PV++NG + D
Sbjct: 179 RRQGAADLEVVRALKSALTVPVVSNGNVRHWDD 211
>gi|440290437|gb|ELP83849.1| tRNA-dihydrouridine synthase, putative [Entamoeba invadens IP1]
Length = 357
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 17/215 (7%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S +ILAPMV + FR +G DL Y+ ++ +++ +++ T+D
Sbjct: 21 SPHVILAPMVDGSDTSFRSFVHKHGVDLCYTPMVLSKLFNESKTYRQEVIKTLD------ 74
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
PRE+ +++QI DP+ AAK + IDIN+GCP++ + G GA
Sbjct: 75 --------PRER-PLVIQIVGHDPDEMGRAAKLLSKYCDVIDINLGCPQKIAQKGQYGAY 125
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ ++ + +PV CKIRV + T+ L L ACGI + VHGRT E
Sbjct: 126 LSQDLSQTEKVVKAVMKAVEVPVYCKIRVSEDHEKTMKLVDMLVACGIWGLCVHGRTIDE 185
Query: 210 RPR--HRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + R E+I + + + IPVIANGG + D
Sbjct: 186 KQSGVYHARWEIISDIKKRVAIPVIANGGIATMSD 220
>gi|373466946|ref|ZP_09558255.1| tRNA-dihydrouridine synthase B [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371759710|gb|EHO48422.1| tRNA-dihydrouridine synthase B [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 326
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTGA 218
>gi|319775087|ref|YP_004137575.1| tRNA-dihydrouridine synthase B [Haemophilus influenzae F3047]
gi|329123002|ref|ZP_08251573.1| tRNA-dihydrouridine synthase B [Haemophilus aegyptius ATCC 11116]
gi|317449678|emb|CBY85884.1| tRNA-dihydrouridine synthase B [Haemophilus influenzae F3047]
gi|327471933|gb|EGF17373.1| tRNA-dihydrouridine synthase B [Haemophilus aegyptius ATCC 11116]
Length = 326
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTGA 218
>gi|90415235|ref|ZP_01223169.1| tRNA-dihydrouridine synthase B [gamma proteobacterium HTCC2207]
gi|90332558|gb|EAS47728.1| tRNA-dihydrouridine synthase B [marine gamma proteobacterium
HTCC2207]
Length = 348
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 112/233 (48%), Gaps = 22/233 (9%)
Query: 9 LLVKIFYVLDMANANQANI---NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVD 65
+++ + + AN NI + K +LAPM + LPFR L + GA +V SE +
Sbjct: 5 IIIDLLFQTRPPEANVFNIGPYQINRKTVLAPMAGVTDLPFRQLCREMGAGMVVSEMVAA 64
Query: 66 HKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVE 124
+ RK I F D PR +QI DP EAA+ V+
Sbjct: 65 DPSTWSSRKSK---LRIQFAD--------EPAPRS-----VQIAGYDPLMMAEAARFNVQ 108
Query: 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA- 183
IDINMGCP + L G+ALL PD+ +IL ++ ++ +PV+ KIR +
Sbjct: 109 QGAEIIDINMGCPAKKVLKKAAGSALLQHPDLVQDILRAVVDSVDVPVTLKIRTGWDRQN 168
Query: 184 -DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ +++ K E GI A+ +HGRT+A R + I + + L IPVIANG
Sbjct: 169 RNAVSIAKIAEDAGIAALAIHGRTRACRFVKEVEYDTIANVVEALSIPVIANG 221
>gi|429099114|ref|ZP_19161220.1| tRNA dihydrouridine synthase B [Cronobacter dublinensis 582]
gi|426285454|emb|CCJ87333.1| tRNA dihydrouridine synthase B [Cronobacter dublinensis 582]
Length = 327
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 16 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPEVWASDKSRLRMVHVD------- 68
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE EAA+ VE+ IDINMGCP + G+A
Sbjct: 69 ---------EPGIRTVQIAGSVPEEMAEAARINVENGAQIIDINMGCPAKKVNRKLAGSA 119
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRTK 207
LL P++ +ILT +++ + +PV+ KIR + A+ + + + E CGI A+ +HGRT+
Sbjct: 120 LLQYPELVKSILTAVVNAVDVPVTLKIRTGWDPANRNCVEIAQLAEECGIQALTIHGRTR 179
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + + IRT+ Q + IPVIANG ++ ++DY G +L
Sbjct: 180 ACLFQGNAEYDSIRTVKQKVSIPVIANGDITSPHKARAVLDYTGADAL 227
>gi|320583070|gb|EFW97286.1| tRNA-dihydrouridine synthase 1 [Ogataea parapolymorpha DL-1]
Length = 402
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 13/176 (7%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K ++APMV + L +R+++ YGADL YS ++ +L T+ K + + P+DGS
Sbjct: 19 KKVVAPMVDGSELAWRMISRKYGADLCYSP-MLHSRLFATDDKYREKM-----FGPMDGS 72
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
V R +I+Q DP+ L+AAK VE A+D+N+GCP+ + G G+ L+
Sbjct: 73 EVDRP-------LIVQFCANDPDYLLQAAKHVEDRCDAVDLNLGCPQGIARKGHYGSFLM 125
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
D+ ++ TL NL IPV+ KIRV+ + ++A K G + VHGRT+
Sbjct: 126 EDWDLISKLINTLHRNLKIPVTAKIRVYDDWEKSLAYAKMCLDAGAQFLTVHGRTR 181
>gi|407843638|gb|EKG01526.1| dihydrouridine synthase, putative [Trypanosoma cruzi]
Length = 430
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 117/234 (50%), Gaps = 36/234 (15%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKV---NDLLN-TIDF 84
Y K ILAPMVR+ + FR+ GAD+V++EE+V KL + R+V ND I+F
Sbjct: 4 YQRKTILAPMVRVGNVGFRVFCAAQGADVVFTEEVVAAKLARCHREVRVHNDAAGPMIEF 63
Query: 85 V------DPLDGSVVFRTCPR-------EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
V + SVVF T R E ++LQ+G +D + AA DV ID
Sbjct: 64 VAYELFKNQYKRSVVFTTPARDMANQSGEGAPVVLQLGVSDAAVGVAAALLCCEDVDGID 123
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-----------IPVSCKIRVFH 180
+NMGCPK+FS+ GMGAAL+ A +IL +L L+ +P+S KIR+
Sbjct: 124 VNMGCPKKFSVDNGMGAALMRDTSKAASILFSLDDALNSPDKLAARGRRVPLSFKIRLLE 183
Query: 181 NEADT----IALCKRLEACGIIAIGVHGRT----KAERPRHRNRIEMIRTLTQH 226
T I++ +++ A + AI +H RT + P + E +R L H
Sbjct: 184 TAEATADMLISIMEKVGANRVHAITLHARTVNQVAEDSPHYDRAAEAVRRLRSH 237
>gi|110834874|ref|YP_693733.1| NifR3 family TIM-barrel protein [Alcanivorax borkumensis SK2]
gi|110647985|emb|CAL17461.1| TIM-barrel protein, putative, NifR3 family, putative [Alcanivorax
borkumensis SK2]
Length = 346
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 19/211 (9%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
N N +ILAPM + PFR L D GA L+ SE + + RK L+
Sbjct: 7 NLPNSLILAPMAGVTDRPFRRLCRDLGAGLLVSEMVTSDTRLWNSRKSRQRLDHSG---- 62
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGM 146
E I +QI +P EAA+ VEH IDINMGCP +
Sbjct: 63 ------------EPGPISVQIAGGEPAMLAEAARANVEHGAQIIDINMGCPAKKVCKRAA 110
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGVHG 204
G+ALL+ PD+ IL + +++PV+ KIR ++ + I + + E GI A+ +HG
Sbjct: 111 GSALLADPDLVARILDAVTQAVNVPVTLKIRTGPDRDQRNAIDIARIAETAGIQALAIHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+A++ I+ + + IP++ANG
Sbjct: 171 RTRADKFNGDAEYATIKQVVDAVNIPIMANG 201
>gi|145637283|ref|ZP_01792944.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
PittHH]
gi|145269535|gb|EDK09477.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
PittHH]
Length = 326
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTGA 218
>gi|291520867|emb|CBK79160.1| tRNA-U20-dihydrouridine synthase [Coprococcus catus GD/7]
Length = 338
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 115/214 (53%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ +ILAPM + LPFR+L + G +V +E +V K + + K NT
Sbjct: 9 GNLCIDRPVILAPMAGVTDLPFRVLCREQGCGMVCTE-MVSAKAITYKNK-----NTF-- 60
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLT 143
+ T P+E+ + LQ+ +DP+ EAA+ + + D +D+NMGCP +
Sbjct: 61 -------FLMETVPQER-PVSLQLFGSDPDIMAEAARMIADRDFDVLDVNMGCPVPKVVN 112
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ P++A I+ +L+ + PV+ KIR ++ + + + K +EA G A+
Sbjct: 113 NGEGSALMKQPELAGRIVRSLVETIDKPVTVKIRKGFDDDHINAVEMAKIVEANGAAAVA 172
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + ++IR + + +KIPVI NG
Sbjct: 173 VHGRTREQYYSGKADWQIIRRVKEAVKIPVIGNG 206
>gi|309751355|gb|ADO81339.1| tRNA-dihydrouridine synthase B [Haemophilus influenzae R2866]
Length = 326
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKLVLDYTGA 218
>gi|262163830|ref|ZP_06031570.1| tRNA dihydrouridine synthase B [Vibrio mimicus VM223]
gi|262027810|gb|EEY46475.1| tRNA dihydrouridine synthase B [Vibrio mimicus VM223]
Length = 331
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 21/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + L KT + N +++
Sbjct: 13 GNHQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH--- 69
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ EAA+ VE+ IDINMGCP +
Sbjct: 70 -----EGESGIRS---------VQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVN 115
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PD+ NIL T+++ +++PV+ K R + + +++ + E CGI A+
Sbjct: 116 KKLAGSALLRHPDVIENILKTVVNAVNVPVTLKTRTGWDTDNKNCVSIAQLAENCGIQAL 175
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+A + + I+ + + IPVIANG
Sbjct: 176 ALHGRTRACMYKGEAEYDSIKAVKAAVSIPVIANG 210
>gi|429083785|ref|ZP_19146814.1| tRNA dihydrouridine synthase B [Cronobacter condimenti 1330]
gi|426547404|emb|CCJ72855.1| tRNA dihydrouridine synthase B [Cronobacter condimenti 1330]
Length = 327
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 16 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPEVWASDKSRLRMVHVD------- 68
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE EAA+ VE+ IDINMGCP + G+A
Sbjct: 69 ---------EPGIRTVQIAGSVPEEMAEAARINVENGAQIIDINMGCPAKKVNRKLAGSA 119
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRTK 207
LL P++ +ILT +++ + +PV+ KIR + A + + + + E CGI A+ +HGRT+
Sbjct: 120 LLQYPELVKSILTAVVNAVDVPVTLKIRTGWDPAHRNCVEIAQLAEECGIQALTIHGRTR 179
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + + IRT+ Q + IPVIANG ++ ++DY G +L
Sbjct: 180 ACLFQGNAEYDSIRTVKQKVSIPVIANGDITSPHKARAVLDYTGADAL 227
>gi|386266285|ref|YP_005829777.1| tRNA-dihydrouridine synthase B [Haemophilus influenzae R2846]
gi|309973521|gb|ADO96722.1| tRNA-dihydrouridine synthase B [Haemophilus influenzae R2846]
Length = 326
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTGA 218
>gi|150866685|ref|XP_001386359.2| dihydrouridine synthase [Scheffersomyces stipitis CBS 6054]
gi|149387941|gb|ABN68330.2| dihydrouridine synthase [Scheffersomyces stipitis CBS 6054]
Length = 369
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 18/205 (8%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
+ PMVR + LPFR L +Y D+VY+ ++ + V+ ND+ + DF
Sbjct: 55 FVAGPMVRYSKLPFRELVRNYNTDIVYTPMILAREFVR-----NDIARSSDF-------- 101
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
T + +I+Q+G+ + E L+ + + V I +N GCP + + G+GAAL+S
Sbjct: 102 ---TTNDKDRCVIVQVGSNNVEDLLKFVEMIHPYVDGIGLNCGCPIKEQVREGIGAALMS 158
Query: 153 TPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
PD+ +++ + ++ + KIR+ N +TIA K++EA G+ I VHGRTK R
Sbjct: 159 EPDLVASMVKAVKEKYGNTVCIETKIRIHPNLDETIAFVKKVEASGVDFITVHGRTKNTR 218
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANG 235
+ I+ + + + +PV+ANG
Sbjct: 219 SSQPANWDAIKLIKETVSVPVVANG 243
>gi|406036750|ref|ZP_11044114.1| tRNA-dihydrouridine synthase B [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 341
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRSLCKYFGAGHAVSEMMTADKTLRMSKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DP EAA+ +V + +DINMGCP + G+
Sbjct: 62 GELA---------PISAQIAGSDPFELAEAARYQVANGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL T+++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDTVVAAVDVPVTLKTRLGFLNGQENILRVAKRAEQAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R E+I+ + Q + IP+IANG +K ++DY G
Sbjct: 173 REDMYLNTARYELIKQVKQMINIPLIANGDIDSPEKAKYVLDYTGA 218
>gi|260581942|ref|ZP_05849738.1| tRNA-dihydrouridine synthase [Haemophilus influenzae NT127]
gi|260095135|gb|EEW79027.1| tRNA-dihydrouridine synthase [Haemophilus influenzae NT127]
Length = 353
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 37 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 94
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 95 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 139
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 140 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 200 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTG 244
>gi|304317751|ref|YP_003852896.1| hypothetical protein Tthe_2344 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779253|gb|ADL69812.1| TIM-barrel protein, nifR3 family [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 333
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 20/214 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N + LAPM + P+RL+ D G Y+E +V K + + + L ID
Sbjct: 18 GDVEIKNNVFLAPMAGVTDKPYRLICKDMGCGFAYTE-MVSAKGLYYGSENTEFLTDID- 75
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLT 143
++ + LQI +DP E AK++ + IDINMGCP +
Sbjct: 76 ---------------DEENVALQIFGSDPYIMGEIAKRLNTSNAKTIDINMGCPTPKIVK 120
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ PD+A +I+ ++ N PV+ KIR ++ + + + K E+CG+ A+
Sbjct: 121 NGDGSALMLKPDLAESIIKAVVKNSIKPVTIKIRKGWDDDHINAVEIAKMAESCGVKAVA 180
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+ + R ++I+ + +LKIPVI NG
Sbjct: 181 IHGRTREQFYSGRADWDIIKKVKDNLKIPVIGNG 214
>gi|15888769|ref|NP_354450.1| nitrogen regulation protein [Agrobacterium fabrum str. C58]
gi|15156519|gb|AAK87235.1| nitrogen regulation protein [Agrobacterium fabrum str. C58]
Length = 338
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 126/276 (45%), Gaps = 29/276 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N+ +LAPM + LPFR LA YGA LV +E + +LV + L
Sbjct: 18 GSVTIRNRAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGM 77
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
V + +Q+ + EAAK ++ IDINMGCP +
Sbjct: 78 VPHM-----------------VQLAGREAHFMAEAAKIAADNGAGIIDINMGCPAKKVTG 120
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A +++ + + +PV+ K+R+ +E A + +R EA G+ I
Sbjct: 121 GYSGSALMRDPDHALSLIEATVGAVDVPVTLKMRLGWDENSINAPEIARRAEAAGVQLIT 180
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGGVFSLNCAFLR 255
+HGRT+ + R + IR + + + +P+IANG ++EI+ G ++
Sbjct: 181 IHGRTRMQFYEGRADWDAIRAVREVISVPLIANGDVETAEDAREILRRSGADAVMVGRGA 240
Query: 256 NHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLF 291
P LP +L H +R ++P YE +
Sbjct: 241 QGQPW--LP-AVLAGHSAPQRADIPTIAVEHYEMML 273
>gi|229846037|ref|ZP_04466149.1| DNA-binding protein Fis [Haemophilus influenzae 7P49H1]
gi|229811041|gb|EEP46758.1| DNA-binding protein Fis [Haemophilus influenzae 7P49H1]
Length = 353
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 37 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 94
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 95 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 139
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 140 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 200 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTG 244
>gi|145640649|ref|ZP_01796232.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
R3021]
gi|145274575|gb|EDK14438.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
22.4-21]
Length = 353
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 37 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 94
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 95 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 139
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 140 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 200 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTG 244
>gi|145628084|ref|ZP_01783885.1| DNA-binding protein Fis [Haemophilus influenzae 22.1-21]
gi|145630072|ref|ZP_01785854.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
R3021]
gi|145638199|ref|ZP_01793809.1| DNA-binding protein Fis [Haemophilus influenzae PittII]
gi|144979859|gb|EDJ89518.1| DNA-binding protein Fis [Haemophilus influenzae 22.1-21]
gi|144984353|gb|EDJ91776.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
R3021]
gi|145272528|gb|EDK12435.1| DNA-binding protein Fis [Haemophilus influenzae PittII]
Length = 353
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 37 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 94
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 95 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 139
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 140 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 200 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKLVLDYTG 244
>gi|323498782|ref|ZP_08103768.1| NifR3/Smm1 family protein [Vibrio sinaloensis DSM 21326]
gi|323316144|gb|EGA69169.1| NifR3/Smm1 family protein [Vibrio sinaloensis DSM 21326]
Length = 320
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL T + + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKLWNTSKSMQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGADPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P+I +IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQFPEIIEDILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + + + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADAL 221
>gi|172087771|ref|YP_205772.2| tRNA-dihydrouridine synthase B [Vibrio fischeri ES114]
gi|171902358|gb|AAW86884.2| tRNA-dihydrouridine synthase B [Vibrio fischeri ES114]
Length = 349
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I+APM + PFR L + YGA + SE + + KL KT + N +++ +
Sbjct: 37 NNLIVAPMAGVTDRPFRELCMRYGAGMAVSEMMSSNPKLWKTSKSQNRMVH--------E 88
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGA 148
G R+ +QI ADP+ EAA+ VE IDINMGCP + G+
Sbjct: 89 GESGIRS---------VQIAGADPKLMAEAAQHCVETGAQIIDINMGCPAKKVNKKLAGS 139
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL +++ + +PV+ K R + + + + K E CGI A+ +HGRT
Sbjct: 140 ALLQRPDLIEEILLAVVNAVDVPVTLKTRTGWDPDNRNCVQVAKMAEQCGIQALALHGRT 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + + I+ + + + IPVIANG ++ ++DY G +L
Sbjct: 200 RACMYKGEAEYDNIKAVKEAISIPVIANGDIDSPEKARFVLDYTGADAL 248
>gi|321476981|gb|EFX87940.1| hypothetical protein DAPPUDRAFT_305459 [Daphnia pulex]
Length = 484
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 104/215 (48%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ILAPMV + LP+RLL+ YG L Y+ + ++ R + L +
Sbjct: 17 SPKYILAPMVDASELPWRLLSRKYGTQLAYTPMMNAGIFIREPRYRREHLESCT------ 70
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +I Q D + L+AAK E AID+N+GCP+ + G GA
Sbjct: 71 ----------EDRPLIAQFCANDTDIFLKAAKMAEQHCDAIDLNLGCPQSIAKKGHYGAF 120
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ ++ + LSIP++CK+RVF + +IA K LE G A+ VHGRT+ +
Sbjct: 121 LQDEWDLISKMVKLIHRELSIPITCKVRVFPDINKSIAYAKMLEESGCYALTVHGRTREQ 180
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + I+ + + IPVIANG + D
Sbjct: 181 KGPLTGLASWKHIQAVKAAVNIPVIANGNIQYWSD 215
>gi|148826373|ref|YP_001291126.1| DNA-binding protein Fis [Haemophilus influenzae PittEE]
gi|148716533|gb|ABQ98743.1| DNA-binding protein Fis [Haemophilus influenzae PittEE]
Length = 353
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 37 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 94
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 95 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 139
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 140 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 200 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTG 244
>gi|423687132|ref|ZP_17661940.1| tRNA-dihydrouridine synthase B [Vibrio fischeri SR5]
gi|371493891|gb|EHN69491.1| tRNA-dihydrouridine synthase B [Vibrio fischeri SR5]
Length = 322
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I+APM + PFR L + YGA + SE + + KL KT + N +++ +
Sbjct: 10 NNLIVAPMAGVTDRPFRELCMRYGAGMAVSEMMSSNPKLWKTSKSQNRMVH--------E 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGA 148
G R+ +QI ADP+ EAA+ VE IDINMGCP + G+
Sbjct: 62 GESGIRS---------VQIAGADPKLMAEAAQHCVETGAQIIDINMGCPAKKVNKKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL +++ + +PV+ K R + + + + K E CGI A+ +HGRT
Sbjct: 113 ALLQRPDLIEEILLAVVNAVDVPVTLKTRTGWDPDNRNCVQVAKMAEQCGIQALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + + I+ + + + IPVIANG ++ ++DY G +L
Sbjct: 173 RACMYKGEAEYDNIKAVKEAISIPVIANGDIDSPEKARFVLDYTGADAL 221
>gi|402864531|ref|XP_003896514.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Papio anubis]
Length = 317
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVRDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCRKAEATGVSWITVHGRTAEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVHYDSIKIIK---ENMSIPVIANGDIRSLKEAENVWQIT 232
>gi|347968560|ref|XP_312125.4| AGAP002791-PA [Anopheles gambiae str. PEST]
gi|333467945|gb|EAA07861.4| AGAP002791-PA [Anopheles gambiae str. PEST]
Length = 412
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 28/210 (13%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER-KVNDLLNTIDFVDPLDGSV 92
I APMVR + L FR L YG DL ++ ++ K+E+ ++N+
Sbjct: 23 ICAPMVRYSKLEFRHLVRSYGTDLAFTSMIMADSFCKSEKARLNEF-------------- 68
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
T E +I Q + L A++ V V +D+N GCP+++++ G G+ALL
Sbjct: 69 ---TTNEEDTPLIAQFAANNTIDFLSASEMVYPYVDGVDLNCGCPQRWAMAEGYGSALLK 125
Query: 153 TPDIACNILTTLISNL--SIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTKA 208
TP++ ++L T+ N+ + VS K+R+ + TI +C++LEA GI + VHGRT
Sbjct: 126 TPELIADMLGTVRRNMPSTFSVSVKVRLLSSTDHKRTIDMCRQLEATGITFLTVHGRTAP 185
Query: 209 ER---PRHRNRIEMIRTLTQHLKIPVIANG 235
E P H++ ++ I+ Q + IP++ANG
Sbjct: 186 EMTKVPVHKDALQEIK---QSIGIPMVANG 212
>gi|313889105|ref|ZP_07822761.1| TIM-barrel protein, nifR3 family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312844845|gb|EFR32250.1| TIM-barrel protein, nifR3 family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 308
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 17/203 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
ILAPM + FR +A + GAD+ +E + LV +K DLL+
Sbjct: 4 ILAPMAGYTDIAFREVATEKGADITVTEMVSAMALVYENKKTIDLLDI------------ 51
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLS 152
P+EK K+ +QI +DP+ +AA+ + ++D + +DINMGCP + G+ LLS
Sbjct: 52 ---SPKEK-KVAVQIFGSDPDVMGQAARILNDYDFSYVDINMGCPAPKIVKNNSGSHLLS 107
Query: 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR 212
P + +I+ +++ N + PV+ K+R ++ K +EA G + VHGRT+ E
Sbjct: 108 DPSLVYDIVKSVVKNSNKPVTAKVRKGIGGLSSMKAIKNIEAAGATFVTVHGRTREEYYT 167
Query: 213 HRNRIEMIRTLTQHLKIPVIANG 235
+ + I+ + ++KIPVI NG
Sbjct: 168 GKADWDFIKEVKANVKIPVIGNG 190
>gi|410670972|ref|YP_006923343.1| dihydrouridine synthase like protein [Methanolobus psychrophilus
R15]
gi|409170100|gb|AFV23975.1| dihydrouridine synthase like protein [Methanolobus psychrophilus
R15]
Length = 317
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 24/227 (10%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ + I LAPM + +PFRL+ +YGA + YSE + ++ K F
Sbjct: 6 VQFPGNIFLAPMANVTNIPFRLMCRNYGASMAYSEMISSDAVIYESSKA--------FSR 57
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTG 144
L +C EK +QI P+ AA K+E ID+N GCP +
Sbjct: 58 GL-------SCKDEK-PFGIQIFGNSPDIISRAALKIEETYQPDIIDVNFGCPAYLLVKD 109
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
G G+ALL +PD+ +I+ L +S PV+ KIRV + T+ + +E G AI VHG
Sbjct: 110 GSGSALLQSPDLIYSIVKELCETVSTPVTAKIRVLEDVERTVQIAGLIEKAGACAITVHG 169
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
RT+ + + E + + + IPVIANG +K+ ++Y G
Sbjct: 170 RTQQQHYAGKANHEYAKRIKCEVTIPVIANGDIIDEISAKDTLEYTG 216
>gi|71404581|ref|XP_804984.1| dihydrouridine synthase [Trypanosoma cruzi strain CL Brener]
gi|70868213|gb|EAN83133.1| dihydrouridine synthase, putative [Trypanosoma cruzi]
Length = 430
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 116/234 (49%), Gaps = 36/234 (15%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKV---NDLLN-TIDF 84
Y K ILAPMVR+ + FR+ GAD+V++EE+V KL + R+V ND I+F
Sbjct: 4 YQRKTILAPMVRVGNVGFRVFCAAQGADVVFTEEIVAAKLARCHREVRVHNDAAGPMIEF 63
Query: 85 V------DPLDGSVVFRTCPR-------EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
V + SVVF T R E ++LQ+G +D + AA DV ID
Sbjct: 64 VAYELFKNQYKRSVVFTTPARDMANQSGEGAPVVLQLGVSDAAVGVAAALLCCEDVDGID 123
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-----------IPVSCKIRVFH 180
+NMGCPK+FS+ GMGAAL+ A +IL L L+ +P+S KIR+
Sbjct: 124 VNMGCPKKFSVDNGMGAALMRDTSKAASILFALDDALNAPDKLAARGRRVPLSFKIRLLE 183
Query: 181 NEADT----IALCKRLEACGIIAIGVHGRT----KAERPRHRNRIEMIRTLTQH 226
T I++ +++ A + AI +H RT + P + E +R L H
Sbjct: 184 TAEATADMLISIMEKVGANRVHAITLHARTVNQVAEDSPHYDRAAEAVRRLRSH 237
>gi|20088934|ref|NP_615009.1| hypothetical protein MA0035 [Methanosarcina acetivorans C2A]
gi|19913780|gb|AAM03489.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 323
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 18/209 (8%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
++LAPM + L FRLL GADL Y+E + L+ RK F+ L+
Sbjct: 17 LLLAPMADVTNLAFRLLCRQDGADLAYTEMINADALLNESRK--------SFIKGLNS-- 66
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVE--HDVAAIDINMGCPKQFSLTGGMGAAL 150
P ++ + +G+ P++ EAA VE ++ IDINMGCP + G G+AL
Sbjct: 67 -----PEDRPFGVQLVGSC-PKKLREAALFVEEEYEPEVIDINMGCPAKCITGAGCGSAL 120
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
L++P++ I++ L L+ PVS KIR+ E T+ + +E G A+ VHGRT A+
Sbjct: 121 LNSPELVRKIISELADALNTPVSAKIRLLGKEEKTLEIACLIEKAGASALTVHGRTAAQM 180
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
+ I+ + L IPVIANG K+
Sbjct: 181 YSGNANLMGIKAVKNELSIPVIANGDIKD 209
>gi|260818049|ref|XP_002603897.1| hypothetical protein BRAFLDRAFT_129997 [Branchiostoma floridae]
gi|229289221|gb|EEN59908.1| hypothetical protein BRAFLDRAFT_129997 [Branchiostoma floridae]
Length = 347
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 20/219 (9%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + LPFR L Y DL +S ++ VK+ + + T PL
Sbjct: 29 VCAPMVRYSKLPFRALVRRYNCDLAFSPMIIAESFVKSLKARDSEFTTNSADRPL----- 83
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
++Q D +AA+ V +D+N GCP+++++ G G+ LL
Sbjct: 84 -----------VVQFAARDGVTLADAAEIVAPYSDGVDLNCGCPQRWAMAEGYGSCLLKN 132
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ +S+ VS KIR+ + +T+ +C++ E G+ I VHGRT ++R
Sbjct: 133 PELVSDMVRQAKARVSDKDFSVSIKIRLHKDLRETVDMCQKAEHAGVSWIAVHGRTPSQR 192
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
N E I + Q L IPVIANG K + D V SL
Sbjct: 193 GEPVN-TEAISLIKQSLSIPVIANGDIKNLEDVKRVQSL 230
>gi|262278220|ref|ZP_06056005.1| tRNA-dihydrouridine synthase B [Acinetobacter calcoaceticus
RUH2202]
gi|262258571|gb|EEY77304.1| tRNA-dihydrouridine synthase B [Acinetobacter calcoaceticus
RUH2202]
Length = 341
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLQMSKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DPE+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 GELA---------PISAQIAGSDPEQLAEAARHQVANGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL T+++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDTVVAAVDVPVTLKTRLGFLNGQENILRVAKRAEEAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R ++I+ + + + IP+IANG +K ++DY G
Sbjct: 173 REDMYLNTARYDLIKHVKELINIPLIANGDIDSPEKAKYVLDYTGA 218
>gi|417841208|ref|ZP_12487312.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus M19501]
gi|341949246|gb|EGT75850.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus M19501]
Length = 326
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S + +PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAVDVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTGA 218
>gi|388453742|ref|NP_001253555.1| dihydrouridine synthase 4-like [Macaca mulatta]
gi|355560906|gb|EHH17592.1| hypothetical protein EGK_14030 [Macaca mulatta]
gi|355747923|gb|EHH52420.1| hypothetical protein EGM_12857 [Macaca fascicularis]
gi|383410657|gb|AFH28542.1| tRNA-dihydrouridine synthase 4-like [Macaca mulatta]
Length = 317
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVRDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCRKAEATGVSWITVHGRTAEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVHYDSIKIIK---ENMSIPVIANGDIRSLKEAENVWQIT 232
>gi|395335120|gb|EJF67496.1| Dus-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 423
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K I+APMV + L +R L+ YGA LVY+ +++ K+ + D V +
Sbjct: 25 SPKYIVAPMVDQSELAWRKLSRKYGAQLVYTP-MINAKMYAEGSRKPYREQNFDTVHGEE 83
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
G E +I+Q +P + L +AK +E A+DIN+GCP+ + G G+
Sbjct: 84 GGP-------EDRPLIVQFCANNPSQLLTSAKLLEPYCDAVDINLGCPQDIARRGHYGSF 136
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ ++ TL NLSIPV+ K RVF T+ K LE+ G + HGR + +
Sbjct: 137 LQDEWDLVHKLIHTLHENLSIPVTAKFRVFPTVEKTVEYAKMLESAGAQMLTCHGRIREQ 196
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANG 235
R + E IR + + + +PV+ANG
Sbjct: 197 RGQRSGLADWEKIRAVKEAVSVPVVANG 224
>gi|375266939|ref|YP_005024382.1| NifR3/Smm1 family protein [Vibrio sp. EJY3]
gi|369842259|gb|AEX23403.1| NifR3/Smm1 family protein [Vibrio sp. EJY3]
Length = 322
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 131/276 (47%), Gaps = 46/276 (16%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL KT + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWKTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAI 200
G+ALL P+I IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPNIIEEILKAVVNAVDVPVTLKTRTGWDTENKNCLQIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSLNCA-- 252
+HGRTKA + + I+ + + + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRP 226
Query: 253 -------------FLRNHYPVEKLP----KTILYAH 271
+L N +++LP KTI+ H
Sbjct: 227 AQGRPWIFQEIHHYLENGTTMDELPVEEVKTIMLGH 262
>gi|424910269|ref|ZP_18333646.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae USDA 2370]
gi|392846300|gb|EJA98822.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae USDA 2370]
Length = 338
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 127/276 (46%), Gaps = 29/276 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N+ +LAPM + LPFR LA YGA LV +E + +LV + L +
Sbjct: 18 GSVTIRNRAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNVGM 77
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
V + +Q+ + EAAK + A I DINMGCP +
Sbjct: 78 VPHM-----------------VQLAGREAHFMAEAAKIAAGNGAGIIDINMGCPAKKVTG 120
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A +++ ++ + +PV+ K+R+ +E A + +R EA G+ I
Sbjct: 121 GYSGSALMRDPDHALSLIEATVNAVDVPVTLKMRLGWDENSINAPDIARRAEAAGVRLIT 180
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGGVFSLNCAFLR 255
+HGRT+ + R + IR + + + +P+IANG ++EI+ G ++
Sbjct: 181 IHGRTRMQFYEGRADWDAIRAVREVISVPLIANGDIETAEDAREILRRSGADAVMVGRGA 240
Query: 256 NHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLF 291
P LP +L H R ++P YE +
Sbjct: 241 QGQPW--LP-AVLAGHAAPHREDIPAIAVEHYEMML 273
>gi|31742496|ref|NP_853559.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like [Homo sapiens]
gi|394025765|ref|NP_001257348.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like [Homo sapiens]
gi|114615410|ref|XP_001164272.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 5 [Pan troglodytes]
gi|332868275|ref|XP_519306.3| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 6 [Pan troglodytes]
gi|397479923|ref|XP_003811250.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 1 [Pan paniscus]
gi|397479925|ref|XP_003811251.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 2 [Pan paniscus]
gi|110808215|sp|O95620.2|DUS4L_HUMAN RecName: Full=tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like;
AltName: Full=pp35; AltName: Full=tRNA-dihydrouridine
synthase 4-like
gi|51095148|gb|EAL24391.1| protein similar to E.coli yhdg and R. capsulatus nifR3 [Homo
sapiens]
gi|119603807|gb|EAW83401.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_c [Homo
sapiens]
gi|119603808|gb|EAW83402.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_c [Homo
sapiens]
gi|119603810|gb|EAW83404.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_c [Homo
sapiens]
gi|410221688|gb|JAA08063.1| dihydrouridine synthase 4-like [Pan troglodytes]
gi|410257808|gb|JAA16871.1| dihydrouridine synthase 4-like [Pan troglodytes]
gi|410297188|gb|JAA27194.1| dihydrouridine synthase 4-like [Pan troglodytes]
gi|410339643|gb|JAA38768.1| dihydrouridine synthase 4-like [Pan troglodytes]
Length = 317
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVHYDSIKIIK---ENMSIPVIANGDIRSLKEAENVWRIT 232
>gi|68249564|ref|YP_248676.1| tRNA-dihydrouridine synthase B [Haemophilus influenzae 86-028NP]
gi|68057763|gb|AAX88016.1| tRNA-dihydrouridine synthase B [Haemophilus influenzae 86-028NP]
Length = 326
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 114/224 (50%), Gaps = 25/224 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+++LAPM + PFR L YGA L +SE + + V K L + D L
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLA---YSDDLGL 66
Query: 91 SVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+ V QI +DP E A AA VE+ IDINMGCP + G+A
Sbjct: 67 NAV-------------QIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL +++ +++PV+ KIR ++++ + + K E CGI A+ VHGRT+
Sbjct: 114 LLQYPDLVEKILREVVAAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
A + + I+ + Q + IPVIANG +K ++DY G
Sbjct: 174 ACLFEGKAEYDNIKAVKQAIVIPVIANGDIDSARKAKFVLDYTG 217
>gi|335037236|ref|ZP_08530547.1| nitrogen regulation protein [Agrobacterium sp. ATCC 31749]
gi|333791392|gb|EGL62778.1| nitrogen regulation protein [Agrobacterium sp. ATCC 31749]
Length = 338
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 126/276 (45%), Gaps = 29/276 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N+ +LAPM + LPFR LA YGA LV +E + +LV + L
Sbjct: 18 GSVTIRNRAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGM 77
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
V + +Q+ + EAAK ++ IDINMGCP +
Sbjct: 78 VPHM-----------------VQLAGREAHFMAEAAKIAADNGAGIIDINMGCPAKKVTG 120
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A +++ + + +PV+ K+R+ +E A + +R EA G+ I
Sbjct: 121 GYSGSALMRDPDHALSLIEATVGAVDVPVTLKMRLGWDENSINAPEIARRAEAAGVQLIT 180
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGGVFSLNCAFLR 255
+HGRT+ + R + IR + + + +P+IANG ++EI+ G ++
Sbjct: 181 IHGRTRMQFYEGRADWDAIRAVREVISVPLIANGDVETAEDAREILRRSGADAVMVGRGA 240
Query: 256 NHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLF 291
P LP +L H +R ++P YE +
Sbjct: 241 QGQPW--LP-AVLAGHSAPQRNDIPAIAVEHYEMML 273
>gi|126653300|ref|ZP_01725411.1| transcriptional regulator involved in nitrogen regulation
(NifR3/Smm1 family) protein [Bacillus sp. B14905]
gi|126589974|gb|EAZ84103.1| transcriptional regulator involved in nitrogen regulation
(NifR3/Smm1 family) protein [Bacillus sp. B14905]
Length = 346
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+I N+++LAPM + FRL ++GA LVY+E + D +V+ K +L +
Sbjct: 12 GDIVMDNRVVLAPMAGICNSAFRLTVKEFGAGLVYAEMISDKGIVQKNEKTLGML----Y 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
+D +N + LQI D E +EAAK V+ + +A IDINMGCP +
Sbjct: 68 ID------------ERENPLSLQIFGGDKETLVEAAKYVDQNTSADIIDINMGCPVNKII 115
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAI 200
GA LL P+ ++ ++ + P+S K+R+ ++ A+ + +E G A+
Sbjct: 116 KCEAGARLLLDPNKVYEMVAAVVDAVKKPISVKMRIGWDDEHIFAIENAQAVERAGASAV 175
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + ++IR + +++KIPV+ NG
Sbjct: 176 AVHGRTRVQMYEGKANWDIIRQVKENVKIPVLGNG 210
>gi|73981937|ref|XP_540383.2| PREDICTED: tRNA-dihydrouridine synthase 4-like [Canis lupus
familiaris]
Length = 317
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 24/221 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L YG DL Y+ +V V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYGCDLCYTPMIVAADFVRS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + TI LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVRDMVKQVRNQVENPRFSVSIKIRIHDDLTRTIDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
P H E I+ + +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVH---YEAIKIIKENMSIPVIANGDIRSLKEAENVWHI 231
>gi|424745653|ref|ZP_18173914.1| TIM-barrel protein, nifR3 family [Acinetobacter baumannii WC-141]
gi|422941842|gb|EKU36905.1| TIM-barrel protein, nifR3 family [Acinetobacter baumannii WC-141]
Length = 341
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DPE+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 GELA---------PISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL +++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDAVVTAVDVPVTLKTRLGFLNGQENILRVAKRAEEAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R ++I+ + + + IPVIANG +K ++DY G
Sbjct: 173 REDMYLNTARYDLIKHVKELINIPVIANGDIDSPEKAKYVLDYTGA 218
>gi|380799123|gb|AFE71437.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like, partial
[Macaca mulatta]
Length = 299
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ K D T + D
Sbjct: 12 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKS-IKARDSEFTTNQGD------- 63
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 64 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 115
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 116 PELVRDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCRKAEATGVSWITVHGRTAEER 175
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 176 HQPVHYDSIKIIK---ENMSIPVIANGDIRSLKEAENVWQIT 214
>gi|407041884|gb|EKE40999.1| dihydrouridine synthase (Dus) family protein [Entamoeba nuttalli
P19]
Length = 366
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 98/176 (55%), Gaps = 6/176 (3%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+LAPMV + T+ +R +ALD GA V++EELV +L + +R N I ++ D V+
Sbjct: 28 VLAPMVGICTISYRTMALDAGASAVFTEELVSKRLCECKRVENS--GIIQYIHKND--VM 83
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
P +++K ILQ+GT D E +++ ++ +V IDIN+GC FS G MG AL+
Sbjct: 84 LTLKPEQQSKTILQLGTFDVESSVKCVSLIQ-EVCGIDINLGCGMWFSTKGEMGQALVDN 142
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
D I+ L+ L P+S KIR+ +T+ + L + GI I +HGR E
Sbjct: 143 RDKLEKIVKALVG-LGKPISAKIRLQQTHEETLEFIQWLYSLGISIISLHGRHHKE 197
>gi|325261220|ref|ZP_08127958.1| TIM-barrel protein, NifR3 family [Clostridium sp. D5]
gi|324032674|gb|EGB93951.1| TIM-barrel protein, NifR3 family [Clostridium sp. D5]
Length = 319
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N IL PM + LPFRLL + GA LV E + ++ + LL
Sbjct: 7 GNVQLQNSYILGPMAGVTDLPFRLLCKEQGAGLVCMEMVSAKGILYNNKNTESLLEI--H 64
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
D + S LQ+ +DP+ E AKK+E AI DINMGCP +
Sbjct: 65 PDEMPAS--------------LQLFGSDPKIVSEMAKKIEERPFAILDINMGCPVPKVVR 110
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIG 201
G G+AL+ P + +++ ++ + PV+ KIR +E + + + K +E G A+G
Sbjct: 111 NGEGSALMKNPKLVYELVSAVVKAIKKPVTVKIRKGFDEDHVNAVEIAKIIEEAGAAAVG 170
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + E+IR + + + IPVI NG
Sbjct: 171 VHGRTREQYYSGKADWEIIRKVKEAVSIPVIGNG 204
>gi|72393571|ref|XP_847586.1| tRNA-dihydrouridine synthase 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62176372|gb|AAX70483.1| tRNA-dihydrouridine synthase 1, putative [Trypanosoma brucei]
gi|70803616|gb|AAZ13520.1| tRNA-dihydrouridine synthase 1, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 520
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 14/216 (6%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD------- 86
++ PMV + LPFRLL YGA L Y+ ++ +T F
Sbjct: 76 VVGPMVDQSELPFRLLCRRYGATLAYTPMFHAKSFAQSAHYRQRYFSTTTFPPHSAMESG 135
Query: 87 ---PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
+ S + + Q DPE L AA+ VE A+D N+GCP+ +
Sbjct: 136 GNVAANDSTSNDGALDNDHPLFAQFCGNDPETVLAAARHVEDYCEAVDFNIGCPQGIARR 195
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
G G+ L+ ++ NIL L L +PV+ K+R+F +EA T+ + L GI + VH
Sbjct: 196 GHYGSFLMEDWELLHNILHALAVELRVPVTAKMRIFDDEALTLKYAEMLRDTGIYVLCVH 255
Query: 204 GRTKAERPRHRN--RIEMIRTLTQHLK--IPVIANG 235
GRT+ + + + + MIR + +HL+ IP+IANG
Sbjct: 256 GRTRENKGQQQQPADLRMIRRVHEHLRGSIPIIANG 291
>gi|258513601|ref|YP_003189823.1| nifR3 family TIM-barrel protein [Desulfotomaculum acetoxidans DSM
771]
gi|257777306|gb|ACV61200.1| TIM-barrel protein, nifR3 family [Desulfotomaculum acetoxidans DSM
771]
Length = 322
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 19/221 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++I APM + +R+LA + G LV +E + D L+ K N LL+
Sbjct: 5 GNVTIKNRVISAPMAGITDRAYRILAKEAGCGLVCTEMISDQALLYGNPKTNILLD---- 60
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
C E I +QI + PE AA E A+I DINMGCP +
Sbjct: 61 ------------CTGETPPISMQIFGSSPEYMARAASITEARGASIIDINMGCPTPKIVK 108
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G GAAL+ P++A I++ ++ ++ +PV+ KIR +E+ + + + E G A+
Sbjct: 109 NGEGAALMRKPELAQKIISDVVQSVRVPVTVKIRKGWDESFPNAVEMALLAEEAGAKAVT 168
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
VHGRT+++ + ++I+++ + + IPVI NG +E D
Sbjct: 169 VHGRTRSQFYSGKADWDIIKSVKKAVTIPVIGNGDIREPRD 209
>gi|326436672|gb|EGD82242.1| dihydrouridine synthase [Salpingoeca sp. ATCC 50818]
Length = 434
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 36/275 (13%)
Query: 30 SNKIILAPMVRMNTLPFR-LLALDYGADLVYS-----EELVDHKLVKTERKVNDLLNTID 83
S + + APMV + FR L+ + G DL Y+ ++L+++ L + + DL ++
Sbjct: 26 SPRYVCAPMVWQSETAFRRLVTAEGGCDLAYTPMMHADQLLENNLA-AQSHLTDLRQDME 84
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
P ++ Q+ + + ++AA+ VE V A+D+N+GCP++ +
Sbjct: 85 RGRPY--------------PLLGQLCATNADDFVQAAQLVEPYVDAVDLNLGCPQRTAQA 130
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
GG GA L+ PD I+ + L +PV CKIRVF + T+A + L+ G + VH
Sbjct: 131 GGFGAFLMEHPDTVAAIVQRASTTLQVPVCCKIRVFTDVDKTVAFARMLQESGCSMLAVH 190
Query: 204 GRTKAERPRHRN--RIEMIRTLTQHLKIPVIANGG--SKEIVDYGGVFSLNCAFLRNHYP 259
GRT+A+R H + +R + + L IPV+ NGG +++ D A LR+
Sbjct: 191 GRTRAQR-HHEGTPHYDTVRAIVEALDIPVVVNGGIATRQQAD---------AILRHTGA 240
Query: 260 VEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSL 294
+ T L A C V ET +E + L
Sbjct: 241 CATMSATGLLA-CPLMYTGVAASETTPFEHAHKYL 274
>gi|323485860|ref|ZP_08091195.1| hypothetical protein HMPREF9474_02946 [Clostridium symbiosum
WAL-14163]
gi|323400848|gb|EGA93211.1| hypothetical protein HMPREF9474_02946 [Clostridium symbiosum
WAL-14163]
Length = 319
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 119/233 (51%), Gaps = 31/233 (13%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N + LAPM + LPFRLL + G L+ +E + L+ R +L
Sbjct: 6 GNVELENNVTLAPMAGVTDLPFRLLCREQGCGLMCTEMVSAKALLYNNRNTKPILAV--- 62
Query: 85 VDPLDGSVVFRTCPREKNK-IILQIGTADPERALEAAKKVE---HDVAAIDINMGCPKQF 140
RE+ + + +Q+ +DP+ + A ++E +D+ ID+NMGCP
Sbjct: 63 --------------REQERPVAVQLFGSDPDIMSDMALRLEEGPYDI--IDVNMGCPVPK 106
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGII 198
+ G G+AL+ P++A ILT+++ L PV+ K R +++ + + + E+CG+
Sbjct: 107 IVNNGEGSALMKNPELAEAILTSMVKKLHKPVTVKFRKGFDDSCVNAVEFARMAESCGVS 166
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
A+ VHGRT+ + + ++IR + + +KIPVI NG +K ++D G
Sbjct: 167 AVAVHGRTREQYYSGKADWDIIRQVKEAVKIPVIGNGDIFTPQDAKRMIDLTG 219
>gi|269966802|ref|ZP_06180875.1| tRNA-dihydrouridine synthase B [Vibrio alginolyticus 40B]
gi|269828469|gb|EEZ82730.1| tRNA-dihydrouridine synthase B [Vibrio alginolyticus 40B]
Length = 340
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 130/276 (47%), Gaps = 46/276 (16%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL T + +++
Sbjct: 22 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWGTSKSKQRMVH--- 78
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 79 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPDKKVN 124
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P+I IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 125 KKLAGSALLQYPNIIEEILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAENCGIQAL 184
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSLNCA-- 252
+HGRTKA + + I+ + + + IPVIANG +K +++Y G +L
Sbjct: 185 ALHGRTKACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRP 244
Query: 253 -------------FLRNHYPVEKLP----KTILYAH 271
+L N +E+LP KTI+ H
Sbjct: 245 AQGRPWIFQEIHHYLENGTTMEELPTEEVKTIMLGH 280
>gi|254230100|ref|ZP_04923497.1| tRNA-dihydrouridine synthase B [Vibrio sp. Ex25]
gi|151937389|gb|EDN56250.1| tRNA-dihydrouridine synthase B [Vibrio sp. Ex25]
Length = 340
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 130/276 (47%), Gaps = 46/276 (16%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL T + +++
Sbjct: 22 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWGTSKSKQRMVH--- 78
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 79 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 124
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P+I IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 125 KKLAGSALLQYPNIIEEILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAENCGIQAL 184
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSLNCA-- 252
+HGRTKA + + I+ + + + IPVIANG +K +++Y G +L
Sbjct: 185 ALHGRTKACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRP 244
Query: 253 -------------FLRNHYPVEKLP----KTILYAH 271
+L N +E+LP KTI+ H
Sbjct: 245 AQGRPWIFQEIHHYLENGTTMEELPTEEVKTIMLGH 280
>gi|91228890|ref|ZP_01262792.1| NifR3/Smm1 family protein [Vibrio alginolyticus 12G01]
gi|91187555|gb|EAS73885.1| NifR3/Smm1 family protein [Vibrio alginolyticus 12G01]
Length = 322
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 130/276 (47%), Gaps = 46/276 (16%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL T + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWGTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P+I IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPNIIEEILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAENCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSLNCA-- 252
+HGRTKA + + I+ + + + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRP 226
Query: 253 -------------FLRNHYPVEKLP----KTILYAH 271
+L N +E+LP KTI+ H
Sbjct: 227 AQGRPWIFQEIHHYLENGTTMEELPTEEVKTIMLGH 262
>gi|333375584|ref|ZP_08467392.1| tRNA-dihydrouridine synthase B [Kingella kingae ATCC 23330]
gi|332970433|gb|EGK09425.1| tRNA-dihydrouridine synthase B [Kingella kingae ATCC 23330]
Length = 340
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 108/212 (50%), Gaps = 19/212 (8%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
I +NKIIL+PM + P R LA +GA+ SE L ++ +K + N
Sbjct: 14 IQQANKIILSPMAGITDRPTRQLARQFGANWTVSEMLSSDPTLQNTQKSRNRRNH----- 68
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGG 145
DG E+ I++QI +DP + +AA+ EH IDINMGCP +
Sbjct: 69 --DG---------EQGVIVVQIAGSDPTQLADAARLNAEHGAQVIDINMGCPAKKVCNVL 117
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVH 203
G+ALL + IL ++ S+PV+ K R+ ++ + + + K E GI+A+ +H
Sbjct: 118 AGSALLQNEKLVEQILHAVVQAASVPVTLKTRLGWDDEHKNILTIAKMAEQAGIVALAIH 177
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+ + + + + ++I + Q + +PV ANG
Sbjct: 178 GRTRTQMYKGQAQYDLIAEVKQTISLPVWANG 209
>gi|225389821|ref|ZP_03759545.1| hypothetical protein CLOSTASPAR_03569 [Clostridium asparagiforme
DSM 15981]
gi|225044131|gb|EEG54377.1| hypothetical protein CLOSTASPAR_03569 [Clostridium asparagiforme
DSM 15981]
Length = 319
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 23/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ N +ILAPM + LPFRLL + G +V +E + ++ + +LL
Sbjct: 6 GTVTLDNNVILAPMAGVTDLPFRLLCREQGCGMVVTEMVSAKAILYKNKNTKELL----- 60
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE---HDVAAIDINMGCPKQFS 141
T E+ +Q+ +DPE E A ++E +DV ID+NMGCP
Sbjct: 61 -----------TVRSEERPAAVQLFGSDPEIMAEIAAQIEDGPYDV--IDVNMGCPVPKI 107
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEA-DTIALCKRLEACGIIA 199
+ G G+AL+ P A +L+ ++ + PV+ K R F++E+ + + K E+CG+ A
Sbjct: 108 VNNGEGSALMKDPKRAEAVLSAMVRAVKKPVTVKFRKGFNDESVNAVEFAKMAESCGVAA 167
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ VHGRT+ + ++IR + + +KIPVI NG
Sbjct: 168 VAVHGRTREQYYSGTADWDIIRRVKEAVKIPVIGNG 203
>gi|169825710|ref|YP_001695868.1| tRNA-dihydrouridine synthase 1 [Lysinibacillus sphaericus C3-41]
gi|168990198|gb|ACA37738.1| Probable tRNA-dihydrouridine synthase 1 [Lysinibacillus sphaericus
C3-41]
Length = 346
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+I N+++LAPM + FRL ++GA LVY+E + D +V+ K +L +
Sbjct: 12 GDIVMDNRVVLAPMAGICNSAFRLTVKEFGAGLVYAEMISDKGIVQKNEKTLGML----Y 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
+D +N + LQI D E +EAAK V+ + A IDINMGCP +
Sbjct: 68 ID------------ERENPLSLQIFGGDKETLVEAAKYVDQNTTADIIDINMGCPVNKII 115
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAI 200
GA LL P+ ++ ++ + P+S K+R+ ++ A+ + +E G A+
Sbjct: 116 KCEAGARLLLDPNKVYEMVAAVVDAVKKPISVKMRIGWDDEHIFAIENAQAVERAGASAV 175
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + ++IR + +++KIPV+ NG
Sbjct: 176 AVHGRTRVQMYEGKANWDIIRQVKENVKIPVLGNG 210
>gi|381401107|ref|ZP_09926025.1| tRNA-dihydrouridine synthase B [Kingella kingae PYKK081]
gi|380834032|gb|EIC13882.1| tRNA-dihydrouridine synthase B [Kingella kingae PYKK081]
Length = 337
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 108/212 (50%), Gaps = 19/212 (8%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
I +NKIIL+PM + P R LA +GA+ SE L ++ +K + N
Sbjct: 11 IQQANKIILSPMAGITDRPTRQLARQFGANWTVSEMLSSDPTLQNTQKSRNRRNH----- 65
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGG 145
DG E+ I++QI +DP + +AA+ EH IDINMGCP +
Sbjct: 66 --DG---------EQGVIVVQIAGSDPTQLADAARLNAEHGAQVIDINMGCPAKKVCNVL 114
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVH 203
G+ALL + IL ++ S+PV+ K R+ ++ + + + K E GI+A+ +H
Sbjct: 115 AGSALLQNEKLVEQILHAVVQAASVPVTLKTRLGWDDEHKNILTIAKMAEQAGIVALAIH 174
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+ + + + + ++I + Q + +PV ANG
Sbjct: 175 GRTRTQMYKGQAQYDLIAEVKQTISLPVWANG 206
>gi|331091971|ref|ZP_08340803.1| hypothetical protein HMPREF9477_01446 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402870|gb|EGG82437.1| hypothetical protein HMPREF9477_01446 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 321
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N+ ILAPM + LPFRLL + GA L+ E+V K ++ + K L I
Sbjct: 6 GNVELENRYILAPMAGVTDLPFRLLCKEQGAGLL-CMEMVSAKAIQYKNKNTQALLKIHP 64
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT 143
CP + LQ+ +DP+ E AK +E A +DINMGCP +
Sbjct: 65 ----------EECP-----VSLQLFGSDPDVMSEVAKSIEELPFAILDINMGCPVPKIVK 109
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEA-DTIALCKRLEACGIIAIG 201
G G+AL+ P + I+ + + PV+ KIR F++E+ + + + K +EA G A+
Sbjct: 110 NGEGSALMQNPKLVEQIVKKVSGAIQKPVTVKIRKGFNDESVNAVEIAKIIEASGGAAVA 169
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + ++IR + + + IPVIANG
Sbjct: 170 VHGRTREQYYSGKADWDIIRQVKEAVSIPVIANG 203
>gi|323141551|ref|ZP_08076436.1| TIM-barrel protein, nifR3 family [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413963|gb|EFY04797.1| TIM-barrel protein, nifR3 family [Phascolarctobacterium
succinatutens YIT 12067]
Length = 360
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 19/233 (8%)
Query: 6 TRLLLVKIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVD 65
+ +LL F+ + + N NI S + LAPM + LPFRL+ G + SE +
Sbjct: 10 SSVLLRGSFFSIGVIFMNIGNIELSAPLALAPMAGITDLPFRLICRRLGCGMTVSEMVSA 69
Query: 66 HKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH 125
L+ K ++L D P +Q+ + P EAA+ VE
Sbjct: 70 KGLLYKNVKTTEMLRIDDGERP----------------TAIQLFGSVPAELAEAARMVEA 113
Query: 126 DVA-AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA- 183
A ID NMGCP + G G+AL+ P +A +IL ++ + IPV+ K R ++A
Sbjct: 114 SGADMIDFNMGCPVPKIVNNGEGSALMKNPQLAHDILAAMVKAVKIPVTVKFRAGWDDAN 173
Query: 184 -DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + + + +EA G+ A+ VHGRT+ + + +I + Q +K+PV NG
Sbjct: 174 RNAVEVARAVEAAGVSAVAVHGRTRQQFYEGKADWSIIADVKQAVKVPVFGNG 226
>gi|169845921|ref|XP_001829678.1| tRNA-dihydrouridine synthase 1 [Coprinopsis cinerea okayama7#130]
gi|116509234|gb|EAU92129.1| tRNA-dihydrouridine synthase 1 [Coprinopsis cinerea okayama7#130]
Length = 561
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 9/208 (4%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K I+APMV + L FR L YGA L+Y+ +++ K+ + + D +
Sbjct: 33 SPKYIVAPMVDQSELAFRRLCRQYGAQLIYTP-MINAKMFTDPVNKSYRASAFDIASGEE 91
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
G + +I+Q DP++ L++AK VE A+DIN+GCP+ + G G+
Sbjct: 92 GDMA------SDRPLIVQFCANDPDQLLQSAKVVEKYCDAVDINLGCPQDIAKRGRYGSF 145
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L + +++ TL NLSIPV+ K RVF + T+ K LE G + HGR + +
Sbjct: 146 LQDDWPLIYSMINTLHVNLSIPVTAKFRVFPDVEKTVEYAKMLERAGAQILTCHGRIREQ 205
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
R ++ + IR + + +K+PV ANG
Sbjct: 206 RGQNTGLADWSKIRAVKEAVKVPVFANG 233
>gi|449145357|ref|ZP_21776163.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
gi|449078896|gb|EMB49824.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
Length = 322
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + L KT + N +++
Sbjct: 4 GNHQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ EAA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PD+ +IL T+++ +++PV+ K R + + +++ + E CGI A+
Sbjct: 107 KKLAGSALLRHPDVIESILKTVVNAVNVPVTLKTRTGWDTDNKNCVSIAQLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + + I+ + + IPVIANG ++ +++Y G +L
Sbjct: 167 ALHGRTRACMYKGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADAL 221
>gi|342905115|ref|ZP_08726906.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus M21621]
gi|341951802|gb|EGT78355.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus M21621]
Length = 326
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAVNVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL +++ +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVAAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTG 217
>gi|261330856|emb|CBH13841.1| tRNA-dihydrouridine synthase 1, putative [Trypanosoma brucei
gambiense DAL972]
Length = 520
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 14/216 (6%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD------- 86
++ PMV + LPFRLL YGA L Y+ ++ +T F
Sbjct: 76 VVGPMVDQSELPFRLLCRRYGATLAYTPMFHAKSFAQSAHYRQRYFSTTTFPPHSAMESG 135
Query: 87 ---PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
+ S + + Q DPE L AA+ VE A+D N+GCP+ +
Sbjct: 136 GNVAANDSTSNDGALDNDHPLFAQFCGNDPETILAAARHVEDYCEAVDFNIGCPQGIARR 195
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
G G+ L+ ++ NIL L L +PV+ K+R+F +EA T+ + L GI + VH
Sbjct: 196 GHYGSFLMEDWELLHNILHALAVELRVPVTAKMRIFDDEALTLKYAEMLRDTGIYVLCVH 255
Query: 204 GRTKAERPRHRN--RIEMIRTLTQHLK--IPVIANG 235
GRT+ + + + + MIR + +HL+ IP+IANG
Sbjct: 256 GRTRENKGQQQQPADLRMIRRVHEHLRGSIPIIANG 291
>gi|260596118|ref|YP_003208689.1| tRNA-dihydrouridine synthase B [Cronobacter turicensis z3032]
gi|429102886|ref|ZP_19164860.1| tRNA dihydrouridine synthase B [Cronobacter turicensis 564]
gi|429107157|ref|ZP_19169026.1| tRNA dihydrouridine synthase B [Cronobacter malonaticus 681]
gi|260215295|emb|CBA27235.1| tRNA-dihydrouridine synthase B [Cronobacter turicensis z3032]
gi|426289535|emb|CCJ90973.1| tRNA dihydrouridine synthase B [Cronobacter turicensis 564]
gi|426293880|emb|CCJ95139.1| tRNA dihydrouridine synthase B [Cronobacter malonaticus 681]
Length = 327
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 16 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPEVWASDKSRLRMVHVD------- 68
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE EAA+ V++ IDINMGCP + G+A
Sbjct: 69 ---------EPGIRTVQIAGSVPEEMAEAARINVDNGAQIIDINMGCPAKKVNRKLAGSA 119
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRTK 207
LL P++ +ILT +++ + +PV+ KIR + A+ + + + E CGI A+ +HGRT+
Sbjct: 120 LLQYPELVKSILTAVVNAVDVPVTLKIRTGWDPANRNCVEIAQLAEECGIQALTIHGRTR 179
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + + IRT+ Q + IPVIANG ++ ++DY G +L
Sbjct: 180 ACLFQGNAEYDSIRTVKQKVSIPVIANGDITSPHKARAVLDYTGADAL 227
>gi|417845216|ref|ZP_12491247.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus M21639]
gi|341955747|gb|EGT82201.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus M21639]
Length = 326
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL +++ +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVAAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTGA 218
>gi|336371301|gb|EGN99640.1| hypothetical protein SERLA73DRAFT_134960 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384056|gb|EGO25204.1| hypothetical protein SERLADRAFT_386752 [Serpula lacrymans var.
lacrymans S7.9]
Length = 402
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 10/208 (4%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + L +RLLA YGA+L Y+ +++ K+ N + + +
Sbjct: 31 SPKFVVAPMVDQSELAWRLLARRYGAELAYTP-MINAKMFAGGVHKNYQEQNFNIPNGEE 89
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
G + R +I+Q P++ L +AK VE A+DIN+GCP+ + G G+
Sbjct: 90 GGPLDRP-------LIVQFCANSPDQLLASAKVVEAHCDAVDINLGCPQDIARKGHYGSF 142
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L + N++ TL NL++PV+ K RVF T+ K LE G + HGRT+ +
Sbjct: 143 LQDEWQLIYNLVHTLHRNLAVPVTAKFRVFETVEKTVEYAKMLERAGAQILTCHGRTREQ 202
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
R + + IR + + + +PV ANG
Sbjct: 203 RGHNTGLADWAKIRAVKEAVSVPVFANG 230
>gi|34495999|ref|NP_900214.1| regulatory gene required to sense and relay the nitrogen status
[Chromobacterium violaceum ATCC 12472]
gi|34101852|gb|AAQ58220.1| Regulatory gene required to sense and relay the nitrogen status
[Chromobacterium violaceum ATCC 12472]
Length = 352
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I+APM + PFR+L GA + SE + +K + T K N V+P
Sbjct: 10 NRLIVAPMAGVTDRPFRMLCKRLGAGMAVSEMITANKALWTTPKTLRRANHEGEVEP--- 66
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
I++QI +P+ +AA+ VEH IDINMGCP + G+A
Sbjct: 67 -------------IVVQIAGGEPQMLADAARLNVEHGAQIIDINMGCPAKKVCNVAAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADT-IALCKRLEACGIIAIGVHGRTK 207
LL D IL ++ + +PV+ K R + E T +A+ K E GI A+ +HGRT+
Sbjct: 114 LLRDLDNVGRILEAVVKAVDVPVTLKTRTGWSREVKTALAVAKMAEDAGIAALALHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+ R + IR + Q + IPV+ANG ++ ++DY G ++
Sbjct: 174 EDMYRGDAEYDTIRAVKQAVSIPVVANGDIDSPQKARHVLDYTGADAI 221
>gi|373471294|ref|ZP_09562352.1| TIM-barrel protein, nifR3 family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371760580|gb|EHO49261.1| TIM-barrel protein, nifR3 family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 334
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 133/295 (45%), Gaps = 45/295 (15%)
Query: 8 LLLVKIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHK 67
L L +I +L N NIN + L PM ++ LPFR L + GA L+ +E +V K
Sbjct: 7 LFLERIMKML--KNFKIGNINIEGGLCLGPMAGVSDLPFRHLCKEMGASLLVTE-MVSAK 63
Query: 68 LVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-HD 126
+ + K + L ID + ++ I LQ+ +DP+ E A +E D
Sbjct: 64 AIYFKNKNTEPLMKID---------------KAEHPIALQLFGSDPDIIAEMAASIEDRD 108
Query: 127 VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--D 184
D NMGCP + G G+AL+ P + IL+ L+ ++ PV+ KIR NE +
Sbjct: 109 FDIFDFNMGCPVPKIVNNGEGSALMKNPKLVEEILSKLVKSVKKPVTVKIRRGFNEDNIN 168
Query: 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSK 238
+ + K E G+ A+ VHGRT+ + + +IR + L IPVI NG +K
Sbjct: 169 AVEIAKIAECAGVSAVAVHGRTREQYYSGKADWNIIRDVKSALSIPVIGNGDVTDGESAK 228
Query: 239 EIVDYGG---------------VFSLNCAFLRNHYPVEKLPKTI---LYAHCKYK 275
+ +Y G +F A+L PV+ K I + HC+ +
Sbjct: 229 RMYEYTGCDGIMIARAARGNPWIFREIRAYLNGDTPVKPTAKEIVEMILRHCRLQ 283
>gi|303390091|ref|XP_003073277.1| tRNA-dihydrouridine synthase [Encephalitozoon intestinalis ATCC
50506]
gi|303302422|gb|ADM11917.1| tRNA-dihydrouridine synthase [Encephalitozoon intestinalis ATCC
50506]
Length = 341
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 16/205 (7%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
+ +APMV + +R L+ +GA+L Y+E + ++ R +P+
Sbjct: 13 LAVAPMVGNSEEAWRRLSKRHGANLFYTEMVHCESFLRGSR------------NPVKNR- 59
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
+ T +++QI P+ LEAA +++ AIDIN GCP++ + GG GA L
Sbjct: 60 -WYTTSESDRPLVIQICGNSPKTMLEAALIMQNHCDAIDINFGCPQKVARKGGYGAYLQE 118
Query: 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR 212
D+ I+ L + L++PVSCKIRVF + T+ K +E G + VHGRT+ ++
Sbjct: 119 NWDLTERIVKVLSTGLNVPVSCKIRVFESIEKTVEYAKMIEKAGCSLLAVHGRTRDQKGP 178
Query: 213 HRN--RIEMIRTLTQHLKIPVIANG 235
+ I+ + ++LKIPV++NG
Sbjct: 179 AMGLASWDHIKAVKENLKIPVLSNG 203
>gi|253580949|ref|ZP_04858211.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847791|gb|EES75759.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 321
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 110/216 (50%), Gaps = 23/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +LAPM + LPFR L + GA L+ E ++ K + K NTI
Sbjct: 8 GNVQIDNPFVLAPMAGVTDLPFRTLCKEQGAGLICME-MISAKAISFHNK-----NTIAL 61
Query: 85 --VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFS 141
+DP + + + +Q+ ++P+ E AK +E D +DINMGCP
Sbjct: 62 MEIDPCE------------HPVSMQLFGSEPDLMAEVAKSIEDRDFDILDINMGCPVPKV 109
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNE-ADTIALCKRLEACGIIA 199
+ G G+ALL P++ I+ + S +S P++ K+R+ F NE D + + KR+E G A
Sbjct: 110 VNNGEGSALLKNPNLIEEIVRKVSSAISKPLTVKVRIGFENEPVDIVEIAKRIEDAGAAA 169
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ VHGRT+ + + IR + + + IPVI NG
Sbjct: 170 LAVHGRTRQQYYSGTADWDTIRRVKEAITIPVIGNG 205
>gi|170572143|ref|XP_001891998.1| tRNA-dihydrouridine synthase 4 [Brugia malayi]
gi|158603133|gb|EDP39179.1| tRNA-dihydrouridine synthase 4, putative [Brugia malayi]
Length = 321
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 26/223 (11%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
+ APMVR + LPFR+L Y D+ ++ + + +E+ S
Sbjct: 32 FVSAPMVRYSKLPFRMLVRLYSVDVAFTPMIYAKHFIASEQC---------------RSA 76
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
F TCP + N ++Q + +PE AA + ID+N GCP++ + G G++LL+
Sbjct: 77 EFTTCPGD-NPTVVQFASNEPEEFSTAAMFISRYCRGIDLNCGCPQRDVMREGYGSSLLT 135
Query: 153 TPDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
P +I++T +S P +S KIR+ N T+ C++ E G+ + VHGRT +
Sbjct: 136 DPVRIADIVSTTRRRISRPDFTISIKIRLKPNRQLTLETCRQAERAGVSFVTVHGRTPEQ 195
Query: 210 RPRHRNRIEMIRTLTQHLKIPVIANGGSK------EIVDYGGV 246
R + +MI+ + L IPVIANG K ++V Y GV
Sbjct: 196 RSEPAD-YDMIKLIKSSLSIPVIANGNIKSYEQALQVVKYTGV 237
>gi|332237993|ref|XP_003268188.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 1 [Nomascus leucogenys]
Length = 317
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ ++ VK+ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVKS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVRDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCRKAEATGVSWITVHGRTAEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVHYDSIKIIK---ENMSIPVIANGDIRSLKEAENVWRIT 232
>gi|323693199|ref|ZP_08107417.1| TIM-barrel protein [Clostridium symbiosum WAL-14673]
gi|355621639|ref|ZP_09046240.1| hypothetical protein HMPREF1020_00319 [Clostridium sp. 7_3_54FAA]
gi|323502682|gb|EGB18526.1| TIM-barrel protein [Clostridium symbiosum WAL-14673]
gi|354823446|gb|EHF07777.1| hypothetical protein HMPREF1020_00319 [Clostridium sp. 7_3_54FAA]
Length = 319
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 29/232 (12%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N + LAPM + LPFRLL + G L+ +E + L+ R +L +
Sbjct: 6 GNVELENNVTLAPMAGVTDLPFRLLCREQGCGLMCTEMVSAKALLYNNRNTKPILAVRE- 64
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE---HDVAAIDINMGCPKQFS 141
E+ + +Q+ +DP+ + A ++E +D+ ID+NMGCP
Sbjct: 65 ---------------EERPVAVQLFGSDPDIMSDMALRLEEGPYDI--IDVNMGCPVPKI 107
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIA 199
+ G G+AL+ P +A ILT+++ L PV+ K R +++ + + + E+CG+ A
Sbjct: 108 VNNGEGSALMKNPKLAEAILTSMVKKLHKPVTVKFRKGFDDSCVNAVEFARMAESCGVSA 167
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
+ VHGRT+ + + ++IR + + +KIPVI NG +K ++D G
Sbjct: 168 VAVHGRTREQYYSGKADWDIIRQVKEAVKIPVIGNGDIFTPQDAKRMIDLTG 219
>gi|307243172|ref|ZP_07525345.1| TIM-barrel protein, nifR3 family [Peptostreptococcus stomatis DSM
17678]
gi|306493433|gb|EFM65413.1| TIM-barrel protein, nifR3 family [Peptostreptococcus stomatis DSM
17678]
Length = 319
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 19/216 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
N++ LAPM + LPFRL+ + G L+Y+E + L ++ +LN +D
Sbjct: 9 ENEVFLAPMAGVTDLPFRLICKELGCGLLYTEMINAKALCYDDKNTKKMLNILD------ 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGA 148
E++ + +QI ++PE +AA+ + ++ +DINMGCP + G G+
Sbjct: 63 ----------EEHPVAVQIFGSEPEFMGKAAQILNDYPNEILDINMGCPAPKVVKNGDGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIR--VFHNEADTIALCKRLEACGIIAIGVHGRT 206
AL+ P +A +L ++ N PV+ KIR N + + + K E CGI AI +HGRT
Sbjct: 113 ALMRNPKLAGQVLDQVVKNSKKPVTLKIRKGWDDNSVNALEIAKIAEDCGICAITIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + + ++I + + IPVI NG + D
Sbjct: 173 REQYYSGQADWDIIGEVKSQISIPVIGNGDVTSVED 208
>gi|440492298|gb|ELQ74875.1| tRNA-dihydrouridine synthase [Trachipleistophora hominis]
Length = 314
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 25/215 (11%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
++LAPM + L +R L+ YG DL Y+E + K ++T+ K L DFVD
Sbjct: 11 MVLAPMYKNCGLAYRTLSRKYGTDLCYTEMVHTQKFLQTKNKKRWL---DDFVD------ 61
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
+ +I+QI DP +AA+ AID+N GCP+ + G GA L
Sbjct: 62 ---------SPLIVQICGNDPCVMRKAAEYFT-GALAIDVNFGCPQLIAKRGNYGAYLQD 111
Query: 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR 212
+ IL +L S+L PV+CKIR+F ++ TI + +E G + VHGRT+ +R +
Sbjct: 112 DWQLTSEILKSL-SSLEQPVTCKIRIFDDDKRTIDYVRMIEMSGCKMLAVHGRTREQRGQ 170
Query: 213 HRN--RIEMIRTLTQHLKIPVIANGG---SKEIVD 242
+ I+ + +HL IPVI+NG ++++D
Sbjct: 171 NTGLANWNTIKLVKEHLTIPVISNGNILCRRDVID 205
>gi|242003652|ref|XP_002422814.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
gi|212505672|gb|EEB10076.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
Length = 540
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + ++APMV + L +RLL+ +GA L Y+ ER + L ++ PL
Sbjct: 11 SPRFVVAPMVDASELAWRLLSRRHGAQLCYTPMFHSLIFANNERYRKEGLASVPEDRPL- 69
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
I+Q +P+ L+AA+ E A+DIN+GCP+ + G GA
Sbjct: 70 ---------------IVQFCGNEPDSILKAAQLAEPYCDAVDINLGCPQAIAKRGHYGAF 114
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L + I+ TL +L IPV+CKIRVF + T+ K LE G + VHGRTK +
Sbjct: 115 LQDDWPLLKEIVGTLKKSLKIPVTCKIRVFEDVKKTVKYAKMLEEAGCQLLTVHGRTKEQ 174
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ E I+ + ++++IPV+ANG + + D
Sbjct: 175 KGPLTGLANWEHIKAVRENVRIPVLANGNIQCVQD 209
>gi|258624522|ref|ZP_05719466.1| tRNA-dihydrouridine synthase B [Vibrio mimicus VM603]
gi|258583219|gb|EEW08024.1| tRNA-dihydrouridine synthase B [Vibrio mimicus VM603]
Length = 331
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + L KT + N +++
Sbjct: 13 GNHQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH--- 69
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ EAA+ VE+ IDINMGCP +
Sbjct: 70 -----EGESGIRS---------VQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVN 115
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PD+ +IL T+++ +++PV+ K R + + +++ + E CGI A+
Sbjct: 116 KKLAGSALLRHPDVIESILKTVVNAVNVPVTLKTRTGWDTDNKNCVSIAQLAEDCGIQAL 175
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + + I+ + + IPVIANG ++ +++Y G +L
Sbjct: 176 ALHGRTRACMYKGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADAL 230
>gi|225717662|gb|ACO14677.1| tRNA-dihydrouridine synthase 4-like [Caligus clemensi]
Length = 308
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 19/208 (9%)
Query: 36 APMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-ERKVNDLLNTIDFVDPLDGSVVF 94
APMVR + LPFR L L YGAD+ +S ++ V + E + N+ F
Sbjct: 18 APMVRYSKLPFRRLILSYGADVAFSPMILADSFVSSPEARFNE----------------F 61
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154
T P +I+Q + + + AA+ V +D+N GCP+ +++ G+GAALL P
Sbjct: 62 TTDPLRDRPLIVQFASKSVDDFVSAAQLVAPHAEGVDLNCGCPQGWAIREGIGAALLQRP 121
Query: 155 DIACNIL--TTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR 212
+ +++ T + S+ VS KIR+ + T L K +E G I VHGRTK ++
Sbjct: 122 EFISDVVRSTKNRTQHSLSVSVKIRLQKDHRRTWDLVKAVENAGADFITVHGRTKDQQSG 181
Query: 213 HRNRIEMIRTLTQHLKIPVIANGGSKEI 240
+E ++ + + L IPV+ANG K +
Sbjct: 182 DPVDLEGVKYVKESLSIPVVANGDIKSL 209
>gi|209696242|ref|YP_002264172.1| tRNA-dihydrouridine synthase B [Aliivibrio salmonicida LFI1238]
gi|208010195|emb|CAQ80522.1| tRNA-dihydrouridine synthase B [Aliivibrio salmonicida LFI1238]
Length = 322
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I+APM + PFR L + YGA + SE + + KL KT + N +++ +
Sbjct: 10 NNLIVAPMAGVTDKPFRELCMRYGAGMAVSEMMSSNPKLWKTSKSQNRMVH--------E 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGA 148
G R+ +QI ADP+ EAA+ VE IDINMGCP + G+
Sbjct: 62 GESGIRS---------VQIAGADPKLMAEAARYCVETGAQIIDINMGCPAKKVNKKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++ + +PV+ K R + + + + K E CGI A+ +HGRT
Sbjct: 113 ALLQRPDLIEEILLAVVKAVDVPVTLKTRTGWDPDNRNCVQVAKMAEQCGIQALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + + I+ + + + IPVIANG ++ ++DY G +L
Sbjct: 173 RACMYKGDAEYDNIKAVKEAISIPVIANGDIDSPEKARFVLDYTGADAL 221
>gi|407785670|ref|ZP_11132817.1| dihydrouridine synthase TIM-barrel protein nifR3 [Celeribacter
baekdonensis B30]
gi|407202620|gb|EKE72610.1| dihydrouridine synthase TIM-barrel protein nifR3 [Celeribacter
baekdonensis B30]
Length = 326
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 33/221 (14%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
A++ + LAPM + LPFR L +GA LV SE + H +V
Sbjct: 6 AHLTLDPPVFLAPMAGITDLPFRALVASFGAGLVVSEMVASHDMVNA------------- 52
Query: 85 VDPLDGSVVFRTCPREKNKI-------ILQIGTADPERALEAAKKVEHDVAA-IDINMGC 136
R REK ++ +Q+ + EAAK VE + A IDINMGC
Sbjct: 53 ----------RAGSREKAELGFGVDNSAVQLAGREAHWMSEAAKMVEANGARLIDINMGC 102
Query: 137 PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEA 194
P + ++G G+AL+ D A +++ +++ +SIPV+ K R+ ++A + L +R EA
Sbjct: 103 PAKRVVSGYSGSALMRDLDHALSLIEAVVAAVSIPVTLKTRLGWDDALRNAPELARRAEA 162
Query: 195 CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GI I +HGRT+ + + + IR++ + IPVIANG
Sbjct: 163 AGIAMITIHGRTRCQLYKGQADWAAIRSVKDAVSIPVIANG 203
>gi|395818443|ref|XP_003782638.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Otolemur garnettii]
Length = 317
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 24/219 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDASLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVQDMVKQVRNQVGNPRFSVSIKIRIHDDLSRTVDLCRKAEATGVSWITVHGRTTEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247
P H + I++I+ +++ IPVIANG + + + V+
Sbjct: 194 HQPVHYDAIKIIK---ENMSIPVIANGDIRSLKEAENVW 229
>gi|419840118|ref|ZP_14363515.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus HK386]
gi|386908423|gb|EIJ73119.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus HK386]
Length = 326
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWYTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL +++ +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVAAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTGA 218
>gi|90413381|ref|ZP_01221374.1| putative Dihydrouridine synthase [Photobacterium profundum 3TCK]
gi|90325623|gb|EAS42092.1| putative Dihydrouridine synthase [Photobacterium profundum 3TCK]
Length = 321
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 27/230 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPL 88
+N++I+APM + PFR L L YGA + SE + + L KT + N +++
Sbjct: 9 NNQLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPDLWKTAKSQNRMVH-------- 60
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMG 147
+G R+ +QI ADP+ EAA+ VE+ IDINMGCP + G
Sbjct: 61 EGESGIRS---------VQIAGADPKLMAEAAQFSVENGAQIIDINMGCPAKKVNKRLAG 111
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGR 205
+ALL P + IL +++ + +PV+ K R + + + + K E CGI A+ +HGR
Sbjct: 112 SALLQHPALIEEILRSVVGAVDVPVTLKTRTGWDLDNRNCVDIAKIAEQCGIQALALHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
TK+ + + IR Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TKSCMYKGEAEYDYIRAAKQAVSIPVIANGDIDSPEKARFVLDYTGADAL 221
>gi|89266831|emb|CAJ83965.1| dihydrouridine synthase 4-like (S. cerevisiae) [Xenopus (Silurana)
tropicalis]
Length = 324
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 26/232 (11%)
Query: 16 VLDMANANQANINYSNKI--ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER 73
V+ N ++ +S+ + I APMVR + L FR L Y DL Y+ ++ VK+ +
Sbjct: 16 VMKYVTQNTLDLFHSDHLVRICAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSVK 75
Query: 74 KVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
+ T PL I+Q + + +AA V + ID+N
Sbjct: 76 ARDSEFTTNQGDRPL----------------IVQFAAKEAQVLADAASLVSPFASGIDLN 119
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCK 190
GCP+++++ G GA L++ P++ +++ + + + P +S KIR+ + + T+ LC+
Sbjct: 120 CGCPQRWAMAEGYGACLINNPELVSDMVKQVRNQVGDPGFTISIKIRIHADISRTVDLCR 179
Query: 191 RLEACGIIAIGVHGRTKAER--PRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
+ EA G+ I VHGRT ER P H + I+ I+ + L IPV+ANG K +
Sbjct: 180 KAEAAGVSWITVHGRTHDERHQPVHYDAIKSIK---ESLSIPVVANGDVKSL 228
>gi|349501068|ref|NP_001007929.2| tRNA-dihydrouridine synthase 4-like [Xenopus (Silurana) tropicalis]
Length = 315
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 26/232 (11%)
Query: 16 VLDMANANQANINYSNKI--ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER 73
V+ N ++ +S+ + I APMVR + L FR L Y DL Y+ ++ VK+ +
Sbjct: 7 VMKYVTQNTLDLFHSDHLVRICAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSVK 66
Query: 74 KVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
+ T PL I+Q + + +AA V + ID+N
Sbjct: 67 ARDSEFTTNQGDRPL----------------IVQFAAKEAQVLADAASLVSPFASGIDLN 110
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCK 190
GCP+++++ G GA L++ P++ +++ + + + P +S KIR+ + + T+ LC+
Sbjct: 111 CGCPQRWAMAEGYGACLINNPELVSDMVKQVRNQVGDPGFTISIKIRIHADISRTVDLCR 170
Query: 191 RLEACGIIAIGVHGRTKAER--PRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
+ EA G+ I VHGRT ER P H + I+ I+ + L IPV+ANG K +
Sbjct: 171 KAEAAGVSWITVHGRTHDERHQPVHYDAIKSIK---ESLSIPVVANGDVKSL 219
>gi|54310476|ref|YP_131496.1| dihydrouridine synthase [Photobacterium profundum SS9]
gi|46914919|emb|CAG21694.1| putative Dihydrouridine synthase [Photobacterium profundum SS9]
Length = 321
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 27/230 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPL 88
+N++I+APM + PFR L L YGA + SE + + L KT + N +++
Sbjct: 9 NNQLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPDLWKTAKSQNRMVH-------- 60
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMG 147
+G R+ +QI ADP+ EAA+ VE+ IDINMGCP + G
Sbjct: 61 EGESGIRS---------VQIAGADPKLMAEAAQFSVENGAQIIDINMGCPAKKVNKRLAG 111
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGR 205
+ALL P + IL +++ + +PV+ K R + + + + K E CGI A+ +HGR
Sbjct: 112 SALLQHPALIEEILRSVVGAVDVPVTLKTRTGWDLDNRNCVDIAKIAEQCGIQALALHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
TK+ + + IR Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TKSCMYKGEAEYDYIRAAKQAVSIPVIANGDIDSPEKARFVLDYTGADAL 221
>gi|258620655|ref|ZP_05715692.1| tRNA-dihydrouridine synthase B [Vibrio mimicus VM573]
gi|258587170|gb|EEW11882.1| tRNA-dihydrouridine synthase B [Vibrio mimicus VM573]
Length = 331
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + L KT + N +++
Sbjct: 13 GNHQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH--- 69
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ EAA+ VE+ IDINMGCP +
Sbjct: 70 -----EGESGIRS---------VQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVN 115
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PD+ +IL T+++ +++PV+ K R + + +++ + E CGI A+
Sbjct: 116 KKLAGSALLRHPDVIESILKTVVNAVNVPVTLKTRTGWDTDNRNCVSIAQLAEDCGIQAL 175
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + + I+ + + IPVIANG ++ +++Y G +L
Sbjct: 176 ALHGRTRACMYKGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADAL 230
>gi|16272917|ref|NP_439142.1| hypothetical protein HI0979 [Haemophilus influenzae Rd KW20]
gi|1176212|sp|P44965.1|DUSB_HAEIN RecName: Full=tRNA-dihydrouridine synthase B
gi|1574007|gb|AAC22639.1| nitrogen fixation protein (nifR3) [Haemophilus influenzae Rd KW20]
Length = 330
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + I+ + Q + IPVIANG +K +++Y G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTG 217
>gi|239626632|ref|ZP_04669663.1| TIM-barrel protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516778|gb|EEQ56644.1| TIM-barrel protein [Clostridiales bacterium 1_7_47FAA]
Length = 328
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 23/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N N +ILAPM + LPFRLL + GA V +E + ++ R +L+
Sbjct: 6 GNTILDNNVILAPMAGVTDLPFRLLCREQGAGCVVTEMVSAKAILYNNRNTKELM----- 60
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE---HDVAAIDINMGCPKQFS 141
+ P+E+ I Q+ +DP+ + A ++E +D ID+NMGCP
Sbjct: 61 ----------QIHPQERPAAI-QLFGSDPDIMAQIAARIEDGPYDF--IDVNMGCPVPKI 107
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIA 199
+ G G+AL+ P++A IL+ ++ + PV+ K R N+ + + K EA G+ A
Sbjct: 108 VNNGEGSALMKNPELAEKILSAMVKAVKKPVTVKFRKGFNDTCVNAVEFAKMAEASGVAA 167
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ VHGRT+ + + ++IR + + +KIPVI NG
Sbjct: 168 VAVHGRTREQYYSGKADWDIIRQVKEAVKIPVIGNG 203
>gi|428182144|gb|EKX51006.1| hypothetical protein GUITHDRAFT_66485 [Guillardia theta CCMP2712]
Length = 312
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 103/209 (49%), Gaps = 18/209 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + + APMV + L FRLL +G L Y+ + K + K D L I+
Sbjct: 37 SPRYVSAPMVNNSELAFRLLVRRHGVQLTYTPMIPAKKFISMGAK--DRLALIE------ 88
Query: 90 GSVVFRTCPREKNK-IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
P E ++ +I+Q + +P+ LEA + AID+N+GCP+ + GA
Sbjct: 89 --------PHEDDRPLIVQFCSDEPDELLEAGRLARDHCDAIDLNLGCPQSQAARDHYGA 140
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
L+ P++ ++ L +PV+CKIRVF N T+A K L+A G + VHGRT+
Sbjct: 141 VLMEEPELVSRMVRRASQGLRVPVTCKIRVFDNLERTVAFAKMLQASGCSMLTVHGRTRG 200
Query: 209 -ERPRHRNRIEMIRTLTQHLKIPVIANGG 236
+ IR + + + IPVIANGG
Sbjct: 201 CTHHEGSCNWDYIREVKEAVDIPVIANGG 229
>gi|403052252|ref|ZP_10906736.1| tRNA-dihydrouridine synthase B [Acinetobacter bereziniae LMG 1003]
Length = 340
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 25/225 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + + ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTSDQTLRMTKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI ++PE+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 GELA---------PISAQIAGSEPEQLAEAARYQVSNGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL +++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDAVVNAVDVPVTLKTRLGYLNGQENILRVAKRAEEAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+ + + R +I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 REDMYLNTARYHLIKEVKQLISIPVIANGDIDSPEKAKYVLDYTG 217
>gi|145632364|ref|ZP_01788099.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
3655]
gi|144987271|gb|EDJ93801.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
3655]
Length = 353
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 21/209 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 37 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 94
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 95 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 139
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 140 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+A + I+ + Q + IPVIANG
Sbjct: 200 RACLFEGEAEYDNIKAVKQAIAIPVIANG 228
>gi|424890498|ref|ZP_18314097.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2012]
gi|393172716|gb|EJC72761.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2012]
Length = 339
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 20/221 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+++ N+++LAPM + +PFR LA +GA LV +E + +LV + L F
Sbjct: 21 GDVSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLKAAGF 80
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
++Q+ + EAAK +H IDINMGCP + +
Sbjct: 81 -----------------RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 123
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A ++ + + IPV+ K+R+ +E A + +R EA GI +
Sbjct: 124 GYSGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPEIARRAEAAGIQLVT 183
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+HGRT+ + R + IR + + + IP+IANG + D
Sbjct: 184 IHGRTRMQFYEGRADWDAIRPVREVISIPLIANGDVETAAD 224
>gi|226942119|ref|YP_002797193.1| NifR3 [Laribacter hongkongensis HLHK9]
gi|226717046|gb|ACO76184.1| NifR3 [Laribacter hongkongensis HLHK9]
Length = 341
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 25/229 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+N++++APM + PFR+L +GA L SE + + + T RK L D
Sbjct: 9 ANRLVVAPMAGVTDRPFRMLCRRFGAGLAVSEMIASNTALATSRKT---LKRADHTG--- 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGA 148
E + +QI ADP+ +AA++ V++ IDINMGCP + G+
Sbjct: 63 ----------EPGPVSVQIAGADPQEMADAARRNVDYGAQIIDINMGCPAKKVCNVAAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRT 206
ALL + IL ++ + +PV+ K R + + +A+ + E GI A+ +HGRT
Sbjct: 113 ALLKDEPLVARILEAVVRAVDVPVTLKTRTGWSREHRNALAVARLAEESGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+ ++ + IR + ++IPVIANG ++ ++DY G ++
Sbjct: 173 REDKYLGEAEYDTIRAVKAAVRIPVIANGDIDSPEKARHVLDYTGADAI 221
>gi|291391307|ref|XP_002712160.1| PREDICTED: dihydrouridine synthase 4-like [Oryctolagus cuniculus]
Length = 317
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 24/221 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVKS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D EAA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSEAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + T+ LC++ EA G+ I +HGRT ER
Sbjct: 134 PELVRDMVKQVRNQVENPRFSVSIKIRIHEDLRRTVDLCQKAEATGVSWITIHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVHYDAIKIIK---ENISIPVIANGDIRSLKEAENVWQV 231
>gi|321469164|gb|EFX80145.1| hypothetical protein DAPPUDRAFT_304174 [Daphnia pulex]
Length = 303
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 20/205 (9%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + LPFRLL YG DL ++ ++ ++ P +
Sbjct: 14 ICAPMVRYSKLPFRLLVRKYGCDLAFTPMIISDSFIQA---------------PKARDIE 58
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
F TC ++ +I+Q + AA+ V +D+N GCP+++++ G GA L++
Sbjct: 59 FTTCDADQ-PLIVQFAAHNSTDFATAAELVASTCNGVDLNCGCPQKWAMQQGYGACLINK 117
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ I + VS KIR+ T+ LC+++EA G+ + VHGRTK +R
Sbjct: 118 PELLRDVVLQTRNRIPSNDFTVSIKIRIHPEIRKTVELCQQVEAAGLSFLTVHGRTKDQR 177
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANG 235
N +E ++ + + +++PVIANG
Sbjct: 178 SDPVN-LEGVKLIKESVRVPVIANG 201
>gi|118082096|ref|XP_001231946.1| PREDICTED: tRNA-dihydrouridine synthase 4-like isoform 2 [Gallus
gallus]
Length = 301
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 24/224 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L YG DL Y+ +V V++ + + T
Sbjct: 28 ICAPMVRYSKLAFRTLVRRYGCDLCYTPMVVAADFVRSAKARDSEFTT------------ 75
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R N +I+Q + + +AA V +D+N GCP+++++ G GA L++
Sbjct: 76 ----NRGDNPLIVQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINK 131
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + I N VS KIR+ + T+ LCK+ EA G+ I VHGR ER
Sbjct: 132 PELVRDMVRHVRNQIDNPRFSVSIKIRIHEDLKKTVDLCKKAEATGVSWITVHGRNIEER 191
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
P H + I++I+ + + IPV+ANG K + D V L A
Sbjct: 192 HQPVHYDAIKVIK---ESIHIPVVANGDIKTLKDAENVHHLTGA 232
>gi|302390915|ref|YP_003826735.1| tRNA-U20-dihydrouridine synthase [Acetohalobium arabaticum DSM
5501]
gi|302202992|gb|ADL11670.1| tRNA-U20-dihydrouridine synthase [Acetohalobium arabaticum DSM
5501]
Length = 322
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 29/232 (12%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ N ++LAPM + LPFR + ++G LV +E + LV + +LL D
Sbjct: 4 GEVELDNPVMLAPMAGVTDLPFRRIVKEFGCGLVCTEMVSAKGLVYGSSRTEELLTISDQ 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH---DVAAIDINMGCPKQFS 141
P+ LQI ++PE EA +K+E D+ ID+N+GCP
Sbjct: 64 ERPVS----------------LQIFGSEPEIMAEAVEKIEEYRPDI--IDVNLGCPTPKI 105
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIA 199
+ GG G+ L+ PD+ I+ L+ IP++ K+R +E + + + + E G+ A
Sbjct: 106 VKGGAGSVLMKEPDLVGRIVDALVRATEIPITVKMRKGWDEDHVNAVEIAQTAEESGVQA 165
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
+ VHGRT+ + + +I+ + + +++PVI NG ++E++D G
Sbjct: 166 VAVHGRTREQFYKGEADWNIIKEVKEAVEVPVIGNGDIFSPQDAEEMIDTTG 217
>gi|427425041|ref|ZP_18915153.1| TIM-barrel protein, nifR3 family [Acinetobacter baumannii WC-136]
gi|425698358|gb|EKU68002.1| TIM-barrel protein, nifR3 family [Acinetobacter baumannii WC-136]
Length = 341
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 25/225 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + VKT R L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMT---AVKTLRMSKKSLYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DPE+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 GELA---------PISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL +++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDAVVTAVDVPVTLKTRLGFLNGQENILRVAKRAEEAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+ + + R ++I+ + + + IP+IANG +K ++DY G
Sbjct: 173 REDMYLNTARYDLIKHVKELINIPLIANGDIDSPEKAKYVLDYTG 217
>gi|403386083|ref|ZP_10928140.1| tRNA-dihydrouridine synthase 1 [Kurthia sp. JC30]
Length = 340
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 20/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+I N+++LAPM + FRL ++GA LVY+E + D +V+ +K +L +
Sbjct: 11 GDIEMDNRVVLAPMAGVCNSAFRLTVKEFGAGLVYAEMISDKGIVQRNKKTMSML----Y 66
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
+D +N + LQI D E +EAAK V+ A IDINMGCP +
Sbjct: 67 ID------------ERENPLSLQIFGGDKETLVEAAKYVDQYTTADIIDINMGCPVNKII 114
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAI 200
GA L P+ +++ + +S PVSCK+R+ +E A+ + E G AI
Sbjct: 115 KCEAGAKWLLDPNKIYEMVSAVTDAVSKPVSCKMRIGWDEDHVFAVENAQAAERAGASAI 174
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+ ++ ++++ + +++ IP IANG
Sbjct: 175 AMHGRTRLQQYDGHANWDILKDVKENINIPFIANG 209
>gi|378825772|ref|YP_005188504.1| tRNA-dihydrouridine synthase [Sinorhizobium fredii HH103]
gi|365178824|emb|CCE95679.1| probable tRNA-dihydrouridine synthase [Sinorhizobium fredii HH103]
Length = 342
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 109/221 (49%), Gaps = 20/221 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI N++ LAPM + LPFR+LA +GA V +E + +LV + L
Sbjct: 20 GNIEIRNRVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLRN-SG 78
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
+DP I+Q+ + EAAK VE + A I DINMGCP +
Sbjct: 79 IDPH----------------IVQLAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTG 122
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A +++ + + +PV+ K+R+ +E A + +R E G+ AI
Sbjct: 123 GYSGSALMRDPDHALSLIEATVKAVRVPVTLKMRLGWDENSINAPLIARRAEEAGVQAIT 182
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+HGRT+ + + + IR + + IP+IANG I D
Sbjct: 183 IHGRTRMQFYTGKADWDAIRAVRDVISIPLIANGDVDTITD 223
>gi|260580070|ref|ZP_05847900.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
RdAW]
gi|260093354|gb|EEW77287.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
RdAW]
Length = 357
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 37 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 94
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 95 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 139
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 140 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + I+ + Q + IPVIANG +K +++Y G
Sbjct: 200 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTG 244
>gi|118082094|ref|XP_001231915.1| PREDICTED: tRNA-dihydrouridine synthase 4-like isoform 1 [Gallus
gallus]
Length = 317
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 24/224 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L YG DL Y+ +V V++ + + T
Sbjct: 28 ICAPMVRYSKLAFRTLVRRYGCDLCYTPMVVAADFVRSAKARDSEFTT------------ 75
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R N +I+Q + + +AA V +D+N GCP+++++ G GA L++
Sbjct: 76 ----NRGDNPLIVQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINK 131
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + I N VS KIR+ + T+ LCK+ EA G+ I VHGR ER
Sbjct: 132 PELVRDMVRHVRNQIDNPRFSVSIKIRIHEDLKKTVDLCKKAEATGVSWITVHGRNIEER 191
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
P H + I++I+ + + IPV+ANG K + D V L A
Sbjct: 192 HQPVHYDAIKVIK---ESIHIPVVANGDIKTLKDAENVHHLTGA 232
>gi|406602283|emb|CCH46121.1| tRNA-dihydrouridine synthase [Wickerhamomyces ciferrii]
Length = 340
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 106/223 (47%), Gaps = 27/223 (12%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
I PMVR + LPFR L +Y DLVYS ++ + V+ E T ++ PL
Sbjct: 28 FIAGPMVRYSKLPFRSLVREYNTDLVYSPMILAREFVRNEFARLSDFTTNNYDTPL---- 83
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
I+Q+GT + L + + V I IN GCP + + G+GAAL+S
Sbjct: 84 ------------IVQVGTNNVTDLLRFVEMIHPFVDGIGINCGCPIKEQIREGIGAALMS 131
Query: 153 TPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
PD+ +++ + + + KIR+ + +T+ +++E G+ I VHGRTK R
Sbjct: 132 EPDLVSDMVYAVKQKYGDKVCIETKIRIHPDLNETVKFVQKVEKAGVDFITVHGRTKTTR 191
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAF 253
E I+ + + + +PVIAN G FSLN A+
Sbjct: 192 SSQPANFEAIKLMNESVSVPVIAN---------GDCFSLNDAY 225
>gi|326796326|ref|YP_004314146.1| hypothetical protein Marme_3091 [Marinomonas mediterranea MMB-1]
gi|326547090|gb|ADZ92310.1| TIM-barrel protein, nifR3 family [Marinomonas mediterranea MMB-1]
Length = 329
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 21/212 (9%)
Query: 28 NYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELV-DHKLVKTERKVNDLLNTIDFVD 86
N +ILAPM + LPFR L GA LV SE + D +L + + + L++ +
Sbjct: 9 NIDRPVILAPMAGVTDLPFRRLCYQQGAGLVVSEMVTSDVRLWNSTKSKHRLVHDKEI-- 66
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGG 145
PR +QI A+ E +EAA+K VE IDINMGCP + L
Sbjct: 67 ----------QPRS-----VQIAGANAEMMVEAAQKNVELGAQIIDINMGCPAKKVLNKA 111
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVH 203
G+ALL + +IL +++ ++ +PV+ KIR + + + + + K E CGI A+ VH
Sbjct: 112 AGSALLKDESLVQDILKSVVDSVEVPVTLKIRTGWSSEQRNGLTIAKIAEDCGIQALAVH 171
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+A + + + I + Q + IPV ANG
Sbjct: 172 GRTRACKFQGEAEYDTIAEIKQSVGIPVFANG 203
>gi|334316001|ref|YP_004548620.1| TIM-barrel fold family protein [Sinorhizobium meliloti AK83]
gi|407720398|ref|YP_006840060.1| tRNA-dihydrouridine synthase [Sinorhizobium meliloti Rm41]
gi|418404385|ref|ZP_12977846.1| tRNA-dihydrouridine synthase protein [Sinorhizobium meliloti
CCNWSX0020]
gi|334094995|gb|AEG53006.1| TIM-barrel protein, nifR3 family [Sinorhizobium meliloti AK83]
gi|359501654|gb|EHK74255.1| tRNA-dihydrouridine synthase protein [Sinorhizobium meliloti
CCNWSX0020]
gi|407318630|emb|CCM67234.1| putative tRNA-dihydrouridine synthase [Sinorhizobium meliloti Rm41]
Length = 342
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 20/220 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
N+ N++ LAPM + LPFR+LA +GA V +E + +LV + L +
Sbjct: 21 NVEIRNRVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLKN-SGI 79
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLTG 144
DP I+Q+ + EAA+ VE + A I DINMGCP + G
Sbjct: 80 DPH----------------IVQLAGREAHWMAEAARIVEANGADIIDINMGCPAKKVTGG 123
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGV 202
G+AL+ PD A +++ + +IPV+ K+R+ +E A + +R E G+ AI +
Sbjct: 124 YSGSALMRDPDHALSLIEATVKAATIPVTLKMRLGWDENSINAPLIARRAEEAGVKAITI 183
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
HGRT+ + + + IR + + + IP+IANG + D
Sbjct: 184 HGRTRMQFYNGKADWDAIRAVREVVSIPLIANGDVDSVAD 223
>gi|153839624|ref|ZP_01992291.1| tRNA-dihydrouridine synthase B [Vibrio parahaemolyticus AQ3810]
gi|308094610|ref|ZP_05890528.2| NifR3 family protein [Vibrio parahaemolyticus AN-5034]
gi|308095202|ref|ZP_05903963.2| NifR3 family protein [Vibrio parahaemolyticus Peru-466]
gi|308126676|ref|ZP_05911720.2| NifR3 family protein [Vibrio parahaemolyticus AQ4037]
gi|149746863|gb|EDM57851.1| tRNA-dihydrouridine synthase B [Vibrio parahaemolyticus AQ3810]
gi|308088061|gb|EFO37756.1| NifR3 family protein [Vibrio parahaemolyticus Peru-466]
gi|308094109|gb|EFO43804.1| NifR3 family protein [Vibrio parahaemolyticus AN-5034]
gi|308109548|gb|EFO47088.1| NifR3 family protein [Vibrio parahaemolyticus AQ4037]
Length = 340
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL KT + +++
Sbjct: 22 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWKTSKSKQRMVH--- 78
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 79 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 124
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P I IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 125 KKLAGSALLQYPTIIEEILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQAL 184
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + + + IPVIANG +K +++Y G +L
Sbjct: 185 ALHGRTKACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADAL 239
>gi|241204538|ref|YP_002975634.1| nifR3 family TIM-barrel protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858428|gb|ACS56095.1| TIM-barrel protein, nifR3 family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 338
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 20/212 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++ N+++LAPM + +PFR LA +GA LV +E + +LV + L+ F
Sbjct: 22 VSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLSAAGF-- 79
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGG 145
++Q+ + EAAK +H IDINMGCP + + G
Sbjct: 80 ---------------RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGY 124
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVH 203
G+AL+ PD A ++ + + IPV+ K+R+ +E A + +R EA GI + +H
Sbjct: 125 SGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEAAGIQLVTIH 184
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+ + R + IR + + + IP+IANG
Sbjct: 185 GRTRMQFYEGRADWDAIRAVREVISIPLIANG 216
>gi|293609802|ref|ZP_06692104.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828254|gb|EFF86617.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 341
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DPE+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 GELA---------PISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL +++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDAVVTAVDVPVTLKTRLGFLNGQENILRVAKRAEEAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R ++I+ + + + IP+IANG +K ++DY G
Sbjct: 173 REDMYLNTARYDLIKHVKELINIPLIANGDIDSPEKAKYVLDYTGA 218
>gi|71408629|ref|XP_806706.1| tRNA-dihydrouridine synthase 2 [Trypanosoma cruzi strain CL Brener]
gi|70870530|gb|EAN84855.1| tRNA-dihydrouridine synthase 2, putative [Trypanosoma cruzi]
Length = 430
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 115/234 (49%), Gaps = 36/234 (15%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKV---NDLLN-TIDF 84
Y K ILAPMVR+ + FR+ GAD+V++EE+V KL + R+V ND I+F
Sbjct: 4 YQGKTILAPMVRVGNVGFRVFCAAQGADVVFTEEVVAAKLARCHREVRVHNDAAGPMIEF 63
Query: 85 V------DPLDGSVVFRTCPR-------EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
V + SVVF T R E ++LQ+G +D + AA DV ID
Sbjct: 64 VAYELFKNQYKRSVVFTTPARDMTSRSGEGAPVVLQLGVSDAAVGVAAALLCCEDVDGID 123
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-----------IPVSCKIRVFH 180
+NMGCPK+FS+ GMGAAL+ A +IL L L+ +P+S K R+
Sbjct: 124 VNMGCPKKFSVDNGMGAALMRDTSKAASILFALDDALNAPDKLAARGRRVPLSFKTRLLE 183
Query: 181 NEADT----IALCKRLEACGIIAIGVHGRT----KAERPRHRNRIEMIRTLTQH 226
T I++ +++ A + AI +H RT + P + E +R L H
Sbjct: 184 TAEATADMLISIMEKVGANRVNAITLHARTVNQVAEDSPHYDRAAEAVRRLRSH 237
>gi|424870485|ref|ZP_18294147.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae WSM1455]
gi|393166186|gb|EJC66233.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae WSM1455]
Length = 338
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 20/212 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++ N+++LAPM + +PFR LA +GA LV +E + +LV + L+ F
Sbjct: 22 VSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLSAAGF-- 79
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGG 145
++Q+ + EAAK +H IDINMGCP + + G
Sbjct: 80 ---------------RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGY 124
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVH 203
G+AL+ PD A ++ + + IPV+ K+R+ +E A + +R EA GI + +H
Sbjct: 125 SGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEAAGIQLVTIH 184
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+ + R + IR + + + IP+IANG
Sbjct: 185 GRTRMQFYEGRADWDAIRAVREVISIPLIANG 216
>gi|41472|emb|CAA44270.1| ORF1 [Escherichia coli]
Length = 321
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNRVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|301326298|ref|ZP_07219671.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 78-1]
gi|300846999|gb|EFK74759.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 78-1]
Length = 321
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNTVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|255657504|ref|ZP_05402913.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-23m63]
gi|296452824|ref|ZP_06894511.1| tRNA-dihydrouridine synthase [Clostridium difficile NAP08]
gi|296879924|ref|ZP_06903896.1| tRNA-dihydrouridine synthase [Clostridium difficile NAP07]
gi|296258372|gb|EFH05280.1| tRNA-dihydrouridine synthase [Clostridium difficile NAP08]
gi|296429038|gb|EFH14913.1| tRNA-dihydrouridine synthase [Clostridium difficile NAP07]
Length = 322
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 23/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ NK+ L+PM + LPFRL+ + G L+Y+E + L + +L D
Sbjct: 4 GNLELKNKVFLSPMAGVTDLPFRLICKEQGCGLLYTEMINGKALCYDDENTKKMLKIED- 62
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPE---RALEAAKKVEHDVAAIDINMGCPKQFS 141
E++ + +QI ++PE RA E +++ +DINMGCP
Sbjct: 63 ---------------EEHPVAVQIFGSEPEFMGRAAEIMNDYSNEI--LDINMGCPAPKV 105
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR--VFHNEADTIALCKRLEACGIIA 199
+ G G+AL+ P +A +L ++ N PV+ KIR N + + + K E CGI A
Sbjct: 106 VKNGDGSALMKNPKLAEEVLRAVVKNSKKPVTLKIRKGWDDNSVNAVEIAKIAEDCGISA 165
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ +HGRT+ + + ++I + ++L IPVI NG
Sbjct: 166 LAIHGRTREQFYTGKADWDIIAEIKKNLSIPVIGNG 201
>gi|408785355|ref|ZP_11197102.1| tRNA-dihydrouridine synthase [Rhizobium lupini HPC(L)]
gi|408488949|gb|EKJ97256.1| tRNA-dihydrouridine synthase [Rhizobium lupini HPC(L)]
Length = 333
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 125/276 (45%), Gaps = 29/276 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N+ +LAPM + LPFR LA YGA LV +E + +LV + L
Sbjct: 13 GSVTIRNRAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGM 72
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
V + +Q+ + EAAK + A I DINMGCP +
Sbjct: 73 VPHM-----------------VQLAGREAHFMAEAAKIAAGNGAGIIDINMGCPAKKVTG 115
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A +++ + + +PV+ K+R+ +E A + +R EA G+ I
Sbjct: 116 GYSGSALMRDPDHALSLIEATVEAVDVPVTLKMRLGWDENSINAPDIARRAEAAGVRLIT 175
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGGVFSLNCAFLR 255
+HGRT+ + R + IR + + + +P+IANG ++EI+ G ++
Sbjct: 176 IHGRTRMQFYEGRADWDAIRAVREVISVPLIANGDIETAEDAREILRRSGADAVMVGRGA 235
Query: 256 NHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLF 291
P LP +L H R ++P YE +
Sbjct: 236 QGQPW--LP-AVLAGHAAPHREDIPAIAVEHYEMML 268
>gi|319897509|ref|YP_004135706.1| tRNA-dihydrouridine synthase b [Haemophilus influenzae F3031]
gi|317433015|emb|CBY81386.1| tRNA-dihydrouridine synthase B [Haemophilus influenzae F3031]
Length = 326
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E C I A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAINVPVTLKIRTGWDKSNRNCVQIGKIAEQCSIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTGA 218
>gi|395539169|ref|XP_003771545.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Sarcophilus harrisii]
Length = 317
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 112/212 (52%), Gaps = 24/212 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 ICAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVRS-IKARDSEFTTNKGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D + +AA+ V IDIN GCP+++++T G GA L++
Sbjct: 82 ---CP-----LIVQFAANDAQLLSDAARIVYPYANGIDINCGCPQRWAITEGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + S + P VS KIR+ + T+ LC++ EA G+ I VHGR ER
Sbjct: 134 PELVRDMVKQVKSQVENPKFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRNIEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
P H + I++I+ +++ +P+IANG K +
Sbjct: 194 HQPVHYDAIKIIK---ENVSVPIIANGDIKSL 222
>gi|344270847|ref|XP_003407253.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Loxodonta africana]
Length = 317
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 24/221 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVRS-LKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N +S KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVQDMVKQVKNEVENPRFSISIKIRIHGDLTRTVDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
P H + I++I+ +++ IPVIANG K + + V+ +
Sbjct: 194 HQPVHYDAIKIIK---ENMSIPVIANGDIKTLKEAENVWQI 231
>gi|342184162|emb|CCC93643.1| putative tRNA-dihydrouridine synthase 2 [Trypanosoma congolense
IL3000]
Length = 449
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 112/234 (47%), Gaps = 36/234 (15%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKV----NDLLNTIDF 84
Y K ILAPMVR+ + FR GAD+V+SEE+V KL + R+V D+ ++F
Sbjct: 17 YHGKTILAPMVRVGNVGFRAYCAAQGADVVFSEEVVAAKLARCRREVRTYREDVGPMVEF 76
Query: 85 V------DPLDGSVVFRTCPR-------EKNKIILQIGTADPERALEAAKKVEHDVAAID 131
V + +V F T R E +ILQ+G A P AA DV +D
Sbjct: 77 VMYEPYKNKFKRTVAFATLVRTEARPSGEGAPVILQLGVAQPTLGACAALLCADDVDGVD 136
Query: 132 INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-----------IPVSCKIRVFH 180
+NMGCPK+FS+ GMGAAL+ P A I+ + ++ +P+S K R+
Sbjct: 137 VNMGCPKKFSVNNGMGAALMLDPPRAAAIIVAIDDAINTPDKVSLRGHRLPISIKTRLLD 196
Query: 181 NEADT----IALCKRLEACGIIAIGVHGRTKAERPR----HRNRIEMIRTLTQH 226
T IA+ +R+ + I +H RT+ + P + + ++ L QH
Sbjct: 197 TAGATAQMLIAIMERVGPNRVHGITLHARTRDQAPDSPALYERAAQTVKQLRQH 250
>gi|432442750|ref|ZP_19685086.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE189]
gi|430964954|gb|ELC82400.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE189]
Length = 321
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------ESGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|417320755|ref|ZP_12107296.1| NifR3/Smm1 family protein [Vibrio parahaemolyticus 10329]
gi|38604767|sp|Q87KU1.2|DUSB_VIBPA RecName: Full=tRNA-dihydrouridine synthase B
gi|328472220|gb|EGF43090.1| NifR3/Smm1 family protein [Vibrio parahaemolyticus 10329]
Length = 322
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL KT + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWKTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P I IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPTIIEEILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + + + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADAL 221
>gi|320168879|gb|EFW45778.1| tRNA-dihydrouridine synthase 4-like protein [Capsaspora owczarzaki
ATCC 30864]
Length = 432
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 19/214 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L +G DL Y+ V + ++R ++ +T ++ P
Sbjct: 86 ICAPMVRYSKLGFRELVRAFGCDLAYTPMTVAENFILSKRGRDNDFSTNEYDHP------ 139
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+I+Q E AA+ V V IDIN GCP++++++ G G+ALL
Sbjct: 140 ----------VIVQFAAKHTEMLCTAAEMVAPYVDGIDINCGCPQRWAMSEGYGSALLRK 189
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
P + +++ S ++IPVS KIR+ + TI L + E G I VHGRT + RH
Sbjct: 190 PQLIYDMVRAAKSRITIPVSVKIRINLDFKKTIELAQTAERAGADWIAVHGRTPSM--RH 247
Query: 214 RNRI-EMIRTLTQHLKIPVIANGGSKEIVDYGGV 246
I E I+ + ++ IPV+ANG ++D V
Sbjct: 248 EPVILEGIKAVKDNVSIPVVANGDINSMLDVNAV 281
>gi|195997917|ref|XP_002108827.1| hypothetical protein TRIADDRAFT_52208 [Trichoplax adhaerens]
gi|190589603|gb|EDV29625.1| hypothetical protein TRIADDRAFT_52208 [Trichoplax adhaerens]
Length = 309
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 34/242 (14%)
Query: 30 SNKIIL--APMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87
SNK++ APMVR + LPFR L YG D+ ++ ++ +K+E+ T+ P
Sbjct: 13 SNKLVYMSAPMVRYSKLPFRSLVRKYGCDVAFTPMIISESFIKSEKARASEFTTVASDRP 72
Query: 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMG 147
L I+Q ++ +A + + +D+N GCP+++++ G G
Sbjct: 73 L----------------IVQFAASNAFDLADATELIVPYADGVDLNCGCPQRWAMHEGYG 116
Query: 148 AALLSTPDIACNILT---TLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
A L++ P++ ++ + I N + +S KIR+ ++ T+ LC++ EA G+ I VHG
Sbjct: 117 AHLINHPELVKEMVRHTRSKICNENFSISIKIRIHNDINTTVDLCRKAEAAGVSWITVHG 176
Query: 205 RTKAER--PRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSLNCA--FL 254
RT +E+ P H + I+T+ + IPVIANG ++EI D V + A L
Sbjct: 177 RTTSEKHTPVH---YDAIKTIKDSVSIPVIANGNVFTVDDAQEIYDKTNVDGVMSARGIL 233
Query: 255 RN 256
RN
Sbjct: 234 RN 235
>gi|448521763|ref|XP_003868569.1| Dus1 protein [Candida orthopsilosis Co 90-125]
gi|380352909|emb|CCG25665.1| Dus1 protein [Candida orthopsilosis]
Length = 474
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 12/176 (6%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K I+APMV + L +R+L+ YGADL Y+ V +++ + N D
Sbjct: 70 KTIVAPMVDQSELAWRILSRKYGADLCYTPMFHARLFVTSDKYRKSMFNDQD-------- 121
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
PR +I+Q DPE L+AAK VE+ A+D+N+GCP+ + G G+ L+
Sbjct: 122 ----GNPRYDRPLIVQFCANDPEILLQAAKLVENQCDAVDLNLGCPQGIAKKGKYGSFLM 177
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
D+ ++ L +NLSIPV+ KIRV+ + ++ K + G I VHGRT+
Sbjct: 178 EDWDLIHKLIRKLHNNLSIPVTAKIRVYDDYEKSLQYAKMVLDAGAQFITVHGRTR 233
>gi|299769181|ref|YP_003731207.1| TIM-barrel protein, nifR3 family protein [Acinetobacter oleivorans
DR1]
gi|298699269|gb|ADI89834.1| TIM-barrel protein, nifR3 family protein [Acinetobacter oleivorans
DR1]
Length = 341
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DPE+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 GELA---------PISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL +++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLQDEDLVARILDAVVTAVDVPVTLKTRLGFLNGQENILRVAKRAEEVGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R ++I+ + + + IP+IANG +K ++DY G
Sbjct: 173 REDMYLNTARYDLIKHVKELINIPLIANGDIDSPEKAKYVLDYTGA 218
>gi|410952046|ref|XP_003982699.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Felis catus]
Length = 317
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 24/221 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRRYSCDLCYTPMIVAADFVKS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PEVVRDMVKQVRNQVENPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
P H E I+ + +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVH---YEAIKIIKENMSIPVIANGDIRSLKEAENVWHI 231
>gi|443725322|gb|ELU12971.1| hypothetical protein CAPTEDRAFT_132983, partial [Capitella teleta]
Length = 277
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 18/214 (8%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
+++++APMV + L +R+L+ +GADL Y+ V+ + L T +
Sbjct: 19 SRLVVAPMVDQSELAWRILSRRHGADLCYTPMFHAPVFVRDASYRREALTTCE------- 71
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
E +I+Q DPE L+AAK E AID+N+GCP+ + G GA L
Sbjct: 72 ---------EDRPLIVQFCANDPEILLKAAKYAEPHCDAIDLNLGCPQMIAKRGHYGAYL 122
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
D+ +++ L +P++CKIRVF + T+ + LE G + VHGRT+ ++
Sbjct: 123 QEEWDLLERMVSLCAKELKVPITCKIRVFDDVDKTVQYAQMLEKAGCKLLTVHGRTREQK 182
Query: 211 -PRHR-NRIEMIRTLTQHLKIPVIANGGSKEIVD 242
PR I+ + ++KIP+ ANG + + D
Sbjct: 183 GPRTGIASWSHIKAVRDNIKIPMFANGNIQYLPD 216
>gi|51513200|gb|AAH80375.1| MGC79829 protein [Xenopus (Silurana) tropicalis]
Length = 308
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 108/212 (50%), Gaps = 24/212 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y DL Y+ ++ VK+ + + T PL
Sbjct: 20 ICAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSVKARDSEFTTNQGDRPL----- 74
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
I+Q + + +AA V + ID+N GCP+++++ G GA L++
Sbjct: 75 -----------IVQFAAKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLINN 123
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P +S KIR+ + + T+ LC++ EA G+ I VHGRT ER
Sbjct: 124 PELVSDMVKQVRNQVGDPGFTISIKIRIHADISRTVDLCRKAEAAGVSWITVHGRTHDER 183
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
P H + I+++ + L IPV+ANG K +
Sbjct: 184 HQPVH---YDAIKSIKESLSIPVVANGDVKSL 212
>gi|297180133|gb|ADI16356.1| hypothetical protein [uncultured bacterium HF130_01F24]
Length = 329
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 107/209 (51%), Gaps = 21/209 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHK-LVKTERKVNDLLNTIDFVDPLD 89
N + LAPMV ++ PFR + GA L +E L + L K ER
Sbjct: 10 NTLFLAPMVGVSDKPFREVCEQNGAGLTTAEMLTSNSDLWKNER---------------- 53
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
+ + RT P ++QI +DP+ +AA+ E IDINMGCP + L G+
Sbjct: 54 -NRLKRTQPILSGPNVVQIAGSDPKMMSQAAQLNAEWGADVIDINMGCPAKKVLKKAAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRT 206
ALL P + +IL ++I+++ IPV+ KIR A + + + K E CG+ + VHGRT
Sbjct: 113 ALLKDPKLVRSILESVINSVDIPVTLKIRTGWCPATKNGVEVAKIAEDCGVALLTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ R + + E I + Q ++IP+IANG
Sbjct: 173 RECRFKGKVEYETIAKIKQSVRIPIIANG 201
>gi|440789875|gb|ELR11166.1| tRNAdihydrouridine synthase 1-like protein, putative [Acanthamoeba
castellanii str. Neff]
Length = 333
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 78/139 (56%)
Query: 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163
+I+Q DPE L+AA V+ + A+DIN GCP++ + G GA LL + I++T
Sbjct: 61 LIVQFCGNDPEEILQAALLVQDECDAVDINFGCPQKCARKGNFGAYLLHNWPLMEAIVST 120
Query: 164 LISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTL 223
L NLSIPV CKIR+ DTI L L+ G + VHGRT+ R IR +
Sbjct: 121 LHKNLSIPVCCKIRLLPKLEDTIKLALVLQNAGCQVLAVHGRTRESNSRGPADWAAIRQI 180
Query: 224 TQHLKIPVIANGGSKEIVD 242
+ L IPV+ANGG E+ D
Sbjct: 181 KEALSIPVVANGGVDELED 199
>gi|28899658|ref|NP_799263.1| NifR3/Smm1 family protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308125328|ref|ZP_05774543.2| tRNA-dihydrouridine synthase B [Vibrio parahaemolyticus K5030]
gi|28807910|dbj|BAC61147.1| NifR3/Smm1 family protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308112839|gb|EFO50379.1| tRNA-dihydrouridine synthase B [Vibrio parahaemolyticus K5030]
Length = 331
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL KT + +++
Sbjct: 13 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWKTSKSKQRMVH--- 69
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 70 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 115
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P I IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 116 KKLAGSALLQYPTIIEEILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQAL 175
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + + + IPVIANG +K +++Y G +L
Sbjct: 176 ALHGRTKACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADAL 230
>gi|148704962|gb|EDL36909.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_b [Mus
musculus]
Length = 324
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ ++ V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + A TI LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I+MI+ +++ IP++ANG + + + V+ +
Sbjct: 194 HQPVHYDAIKMIK---ENVSIPIVANGDIRSLKEAENVWQMT 232
>gi|449278836|gb|EMC86575.1| tRNA-dihydrouridine synthase 4-like protein [Columba livia]
Length = 315
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 24/224 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y DL Y+ +V V++ + + T PL
Sbjct: 28 ICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSAKARDSEFTTNKGDRPL----- 82
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
I+Q + + +AA+ V ID+N GCP++++++ G GA L++
Sbjct: 83 -----------IVQFAAKEAQVLCDAARIVCPFADGIDLNCGCPQRWAMSEGYGACLINK 131
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + I N VS KIR+ + T+ LC++ EA G+ I VHGR+ ER
Sbjct: 132 PELIRDMVRHVRNQIDNPGFSVSIKIRIHEDLKRTVDLCQKAEATGVSWITVHGRSVQER 191
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
P H + I++I+ Q + IPV+ANG K + D V L A
Sbjct: 192 HQPVHYDAIKIIK---QSMSIPVVANGDIKTLKDAENVHHLTGA 232
>gi|342214027|ref|ZP_08706738.1| TIM-barrel protein, nifR3 family [Veillonella sp. oral taxon 780
str. F0422]
gi|341596228|gb|EGS38845.1| TIM-barrel protein, nifR3 family [Veillonella sp. oral taxon 780
str. F0422]
Length = 336
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 25/224 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
+I LAPM + + +RLLA + GA V +E + + +LL P+
Sbjct: 18 GRIGLAPMAGFSDVSYRLLAKEMGASFVCTEMVSAMGIKYNNEHTKELLYMEAVEQPVS- 76
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLTGGMGAA 149
+QI +DPE AK VE A I DINMGCP + ++ G G+A
Sbjct: 77 ---------------MQIFGSDPEAIAIGAKVVEAAGAPIVDINMGCPVKKVVSSGDGSA 121
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRTK 207
L+ TP++A + + + IPV+ K+R+ +E + + + +R+E+ G+ A+ VHGRT+
Sbjct: 122 LMKTPELAMKVAEAAVKAVQIPVTVKLRLGWDETCINVVDMAQRMESVGVAAVAVHGRTR 181
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
+ + + I+ + L+IPVI NG +K +++Y G
Sbjct: 182 EQMYSGKANWDYIKEVKSALQIPVIGNGDVNSPESAKAMLEYTG 225
>gi|444380140|ref|ZP_21179304.1| tRNA dihydrouridine synthase B [Enterovibrio sp. AK16]
gi|443675763|gb|ELT82480.1| tRNA dihydrouridine synthase B [Enterovibrio sp. AK16]
Length = 343
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 25/229 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
N++I+APM + PFR L L YGA + SE + + + K + + +D
Sbjct: 31 ENQLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPAMWHTAKSRNRMVHLD------ 84
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGA 148
EK +QI A+P +AA+ VE+ +DINMGCP + G+
Sbjct: 85 ----------EKGIRSVQIAGAEPALMADAARFCVENGAQIVDINMGCPVKKVNKKLAGS 134
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL+ PDI IL ++S + +PV+ K R + + + + K E CGI A+ +HGRT
Sbjct: 135 ALLTRPDIIEQILKAVVSAVDVPVTLKTRTGWDPDNKNCVQIAKMAEDCGIQALALHGRT 194
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + + IR + + + IPVIANG +K ++DY G +L
Sbjct: 195 RACMYKGEAEYDSIRAVKEAISIPVIANGDIDSPQKAKFVLDYTGADAL 243
>gi|21312100|ref|NP_082278.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like [Mus musculus]
gi|12845370|dbj|BAB26724.1| unnamed protein product [Mus musculus]
Length = 324
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ ++ V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + A TI LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I+MI+ +++ IP++ANG + + + V+ +
Sbjct: 194 HQPVHYDAIKMIK---ENVSIPIVANGDIRSLKEAENVWQMT 232
>gi|417947861|ref|ZP_12591011.1| tRNA-dihydrouridine synthase B [Vibrio splendidus ATCC 33789]
gi|342810490|gb|EGU45569.1| tRNA-dihydrouridine synthase B [Vibrio splendidus ATCC 33789]
Length = 322
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + K+ KT + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKVWKTSKSQQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ EAA+ V++ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGADPQLMAEAAQFNVDNGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PD+ IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPDLIEEILKAVVNAVDVPVTLKTRTGWDTDNRNCVQIAKIAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + + I+ Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTRACMYKGEAEYKHIKAAKQAVSIPVIANGDIDSPEKAKFVLEYTGADAL 221
>gi|169351459|ref|ZP_02868397.1| hypothetical protein CLOSPI_02239 [Clostridium spiroforme DSM 1552]
gi|169291681|gb|EDS73814.1| TIM-barrel protein, nifR3 family [Clostridium spiroforme DSM 1552]
Length = 326
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 20/222 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI N++++APM + + FR + D+GA LVYSE + D L K D+L D
Sbjct: 5 GNIEIKNQVVMAPMAGITNMAFRKIIKDFGAGLVYSEMVSDKALCYGNTKTIDMLQVDDG 64
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSL 142
P+ +Q+ + ++AAK ++ + IDINMGCP L
Sbjct: 65 EHPVS----------------IQLFGGEVGTMVKAAKFIDQHSNCDIIDINMGCPVNKVL 108
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAI 200
G+ LL PD I+ ++ N+S PV+ KIR + + + + K +E G AI
Sbjct: 109 KADAGSKLLLYPDKIYEIVKGIVDNVSKPVTVKIRSGFDSKHINAVEVAKLIEKAGASAI 168
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+HGRT+++ + ++I + +KIPVI NG + + D
Sbjct: 169 AIHGRTRSQMYEGKADWKIIADVKAAVKIPVIGNGDVRSVED 210
>gi|333897808|ref|YP_004471682.1| hypothetical protein Thexy_1992 [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333113073|gb|AEF18010.1| TIM-barrel protein, nifR3 family [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 323
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 108/214 (50%), Gaps = 20/214 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N + LAPM + P+R + + G Y+E +V K + E + + L ID
Sbjct: 8 GDVEIKNNVFLAPMAGVTDKPYRCICSEMGCGFTYTE-MVSAKGLYYESENTEFLTDID- 65
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLT 143
+ + LQI +DP E AK++ + IDINMGCP +
Sbjct: 66 ---------------DDENVALQIFGSDPYIMGEIAKRLNTSNAKVIDINMGCPTPKIVK 110
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ P++A +++ ++ N S PV+ KIR ++A + + + K E CG+ A+
Sbjct: 111 NGDGSALMLKPELAESVIKAVVKNSSKPVTIKIRKGWDDAHVNAVEIAKMAENCGVKAVA 170
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + ++I+ + +LKIPVI NG
Sbjct: 171 VHGRTREQFYSGNADWDIIKKVKDNLKIPVIGNG 204
>gi|399154794|ref|ZP_10754861.1| nifR3 family TIM-barrel protein [gamma proteobacterium SCGC
AAA007-O20]
Length = 322
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
++K++LAPM + PFR++ + GA L SE +V K LLNT LD
Sbjct: 9 NSKVLLAPMAGTSDKPFRIMCREQGAALTTSEMVVLQK---------HLLNTSKSKHRLD 59
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGA 148
S EK+ I +QI ++ E E+A++ VE IDINMGCP + G+
Sbjct: 60 FS-------SEKSPISIQIAGSEAEELAESARQAVEFGADIIDINMGCPAKKVCNKAAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVHGRT 206
AL+ + +I+ ++++ + IPV+ K+R N+ + A + K E GI + +HGRT
Sbjct: 113 ALMQNEKLVEDIIKSVVNAVDIPVTLKMRTGWNKENKNAPTIAKIAEDFGIQMLAIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A++ E ++ + + + IPVIANG +K+++D+ G
Sbjct: 173 RAQKYNGHAEYETVKEIVELVSIPVIANGDITTAEKAKKVLDFTGA 218
>gi|110808216|sp|Q32M08.1|DUS4L_MOUSE RecName: Full=tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like;
AltName: Full=tRNA-dihydrouridine synthase 4-like
gi|80478497|gb|AAI09352.1| Dihydrouridine synthase 4-like (S. cerevisiae) [Mus musculus]
Length = 324
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ ++ V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + A TI LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I+MI+ +++ IP++ANG + + + V+ +
Sbjct: 194 HQPVHYDAIKMIK---ENVSIPIVANGDIRSLKEAENVWQMT 232
>gi|350588960|ref|XP_003357562.2| PREDICTED: tRNA-dihydrouridine synthase 4-like, partial [Sus
scrofa]
Length = 298
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 7 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSV-KARDSEFTTNQGD------- 58
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP++++L G GA L++
Sbjct: 59 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINK 110
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 111 PELVKDMVKQVRNQVENPRFSVSIKIRIHSDLTRTVDLCRKAEATGVSWITVHGRTVEER 170
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H E I+ + + + IPVIANG + + + V+ +
Sbjct: 171 HQPVH---YEAIKIIKESMSIPVIANGDIRSLKEAENVWHMT 209
>gi|194430249|ref|ZP_03062746.1| tRNA-dihydrouridine synthase B [Escherichia coli B171]
gi|194411720|gb|EDX28045.1| tRNA-dihydrouridine synthase B [Escherichia coli B171]
Length = 321
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|148977178|ref|ZP_01813805.1| NifR3/Smm1 family protein [Vibrionales bacterium SWAT-3]
gi|145963460|gb|EDK28723.1| NifR3/Smm1 family protein [Vibrionales bacterium SWAT-3]
Length = 322
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + K+ KT + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKVWKTSKSQQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ EAA+ V++ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGADPQLMAEAAQFNVDNGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PD+ IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPDLIEEILKAVVNAVDVPVTLKTRTGWDTDNRNCVQIAKIAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + + I+ Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTRACMYKGEAEYKHIKAAKQAVSIPVIANGDIDSPEKAKFVLEYTGADAL 221
>gi|398353347|ref|YP_006398811.1| tRNA-dihydrouridine synthase Dus [Sinorhizobium fredii USDA 257]
gi|390128673|gb|AFL52054.1| putative tRNA-dihydrouridine synthase Dus [Sinorhizobium fredii
USDA 257]
Length = 342
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 22/221 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV-KTERKVNDLLNTIDF 84
N+ N++ LAPM + LPFR LA +GA V +E + +LV L N+
Sbjct: 21 NVEIRNRVALAPMSGVTDLPFRRLAWRFGAGFVVTEMVASRELVCNAAESWARLKNS--G 78
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
+DP I+Q+ + EAAK VE + A I DINMGCP +
Sbjct: 79 IDPH----------------IVQLAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTG 122
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A +++ + + +PV+ K+R+ +E A + +R EA G+ AI
Sbjct: 123 GYSGSALMRDPDHALSLIEATVKAVRVPVTLKMRLGWDENSINAPLIARRAEAAGVQAIT 182
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+HGRT+ + + + IR + + IP+IANG + D
Sbjct: 183 IHGRTRMQFYSGKADWDAIRAVRDAISIPLIANGDVDAVAD 223
>gi|409052056|gb|EKM61532.1| hypothetical protein PHACADRAFT_180642 [Phanerochaete carnosa
HHB-10118-sp]
Length = 473
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 10/208 (4%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + L +R L+ YGA L+Y+ +++ ++ +++ + D +
Sbjct: 25 SPKYVVAPMVDQSELAWRRLSRKYGAQLIYTP-MINARMFAQDQRKSYRPEMFDLGSGEE 83
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
G + R +I+Q D + L+AAK VE A+DIN+GCP+ + G G+
Sbjct: 84 GGLGDRP-------LIVQFAANDLDWLLKAAKMVEARCDAVDINLGCPQDIARRGHYGSY 136
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ ++ L NLSIPV+ K RVF T+ K LE+ G + HGRT+ +
Sbjct: 137 LQDEWDLIYKMINNLHKNLSIPVTAKFRVFPTIEKTVEYAKMLESAGAQILTCHGRTREQ 196
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANG 235
R + E IR + + + +PVIANG
Sbjct: 197 RGHNTGLADWEKIRAVKEAVSVPVIANG 224
>gi|148704961|gb|EDL36908.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_a [Mus
musculus]
Length = 327
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ ++ V++ K D T + D
Sbjct: 33 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRS-IKARDSEFTTNQGD------- 84
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA V IDIN GCP+++++ G GA L++
Sbjct: 85 ---CP-----LIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINK 136
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + A TI LC++ EA G+ I VHGRT ER
Sbjct: 137 PELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEER 196
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I+MI+ +++ IP++ANG + + + V+ +
Sbjct: 197 HQPVHYDAIKMIK---ENVSIPIVANGDIRSLKEAENVWQMT 235
>gi|392560700|gb|EIW53882.1| FMN-linked oxidoreductase [Trametes versicolor FP-101664 SS1]
Length = 360
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 22/217 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMV + LPFR+L Y L Y++ LV +L++ + + +T D D VV
Sbjct: 11 IAAPMVNQSDLPFRILVRRYNTSLAYTQMLVPERLLEDQEYLES--HTRGLRDGPDSPVV 68
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI----DINMGCPKQFSLTGGMGAA 149
+ C DPE L+AA+ V V AI D+N+GCP++ + G G
Sbjct: 69 VQLC------------GNDPEIVLKAARTVVDRVDAIGAYIDLNLGCPQEAAREGQYGGY 116
Query: 150 LLSTPD--IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
LL D + ++++ L +L +PVS K+R+ N + T L RLE G + +H R
Sbjct: 117 LLDKKDWPLVESMVSALSHSLPVPVSAKLRLCQNTSSTPELAARLETAGASWLTLHARHV 176
Query: 208 AERPRHRNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+ R R + ++ +R L +H++IPV++NG + D
Sbjct: 177 SSRRRRQGAADLSQVRILKEHVRIPVVSNGNVRAWED 213
>gi|343426744|emb|CBQ70272.1| related to tRNA dihydrouridine synthase [Sporisorium reilianum
SRZ2]
Length = 505
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 23/242 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV--KTERKVNDLLNTIDF--- 84
S + ++APMV + LP+R+L+ YG+DLVY+ +++ KL ++ +K ++F
Sbjct: 57 SPRRVVAPMVDQSELPWRILSRRYGSDLVYTP-MINAKLFVDESSKKKKVKYQEVNFNKE 115
Query: 85 ------VDPLDGSVVFRTCPREKNK------IILQIGTADPERALEAAKKVEHDVAAIDI 132
P+D +C E + + +Q+ + D L AA+ VE A+D+
Sbjct: 116 HGEEGCSTPID---ALLSCEGEGSSTDSDRPLFVQLCSNDAATLLRAAQVVEDRCDAVDL 172
Query: 133 NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL 192
N+GCP+ + G G+ L+ + ++ TL NL IPV+ K+RV+ + T+A K L
Sbjct: 173 NLGCPQHIARRGHYGSYLMEDWALIFALINTLHLNLKIPVTAKMRVYESVDKTVAYAKLL 232
Query: 193 EACGIIAIGVHGRTKAERPRHRNRIEM--IRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
E G I VHGRT++ + H + IR + +++PV ANG D+G +
Sbjct: 233 ERAGAQIITVHGRTRSMKGHHTGLADWSKIRAVKAAVRVPVFANGNVLYPQDFGDALAAT 292
Query: 251 CA 252
A
Sbjct: 293 GA 294
>gi|300817485|ref|ZP_07097701.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 107-1]
gi|415876868|ref|ZP_11543221.1| tRNA-dihydrouridine synthase B [Escherichia coli MS 79-10]
gi|432807514|ref|ZP_20041429.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE91]
gi|432936440|ref|ZP_20135574.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE184]
gi|433195298|ref|ZP_20379277.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE90]
gi|300529783|gb|EFK50845.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 107-1]
gi|342928385|gb|EGU97107.1| tRNA-dihydrouridine synthase B [Escherichia coli MS 79-10]
gi|431353956|gb|ELG40709.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE91]
gi|431451453|gb|ELH31929.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE184]
gi|431714004|gb|ELJ78212.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE90]
Length = 321
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|449296646|gb|EMC92665.1| hypothetical protein BAUCODRAFT_27019 [Baudoinia compniacensis UAMH
10762]
Length = 395
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 113/215 (52%), Gaps = 11/215 (5%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV-DPLD-GS 91
+ APMVR + LPFRLL Y D++Y+ ++ H+ +++ + DF PL+ S
Sbjct: 74 VSAPMVRYSKLPFRLLLHSYNVDIIYTPMILAHEFIRSP-----IARDSDFATSPLERQS 128
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
++++ +I Q ++DP AA+ + V +D+N GCP+ ++L G+G +L+
Sbjct: 129 TRISHGSQQQHALIAQFASSDPTEFARAAELIAPWVDGVDLNCGCPQSWALKEGIGCSLM 188
Query: 152 STPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
S+P + N++ + L S VS KIR+ + + T+A + I +HGRT+++
Sbjct: 189 SSPTLVANMIRAARARLGPSKSVSVKIRIHADLSKTVAWLDEVAKAEPTFITIHGRTRSQ 248
Query: 210 RPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVD 242
R IRTL + + IPV+ NG + + D
Sbjct: 249 RSSTPPDYGAIRTLRERIPVSIPVVVNGDAYTLSD 283
>gi|227824807|ref|ZP_03989639.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226905306|gb|EEH91224.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 321
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 21/207 (10%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
++LAPM + LPFR++ + GAD SE + L+ +K +L TID
Sbjct: 11 VVLAPMAGVTDLPFRVICRENGADYTVSEMVSAKALLYKNQKTFAML-TID--------- 60
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTGGMGAAL 150
P+E I G+ E L AA K+ A ID+NMGCP ++ G G+AL
Sbjct: 61 -----PKEHPTAIQLFGSVPSE--LAAAGKIVESRGADMIDVNMGCPVHKIVSNGEGSAL 113
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRTKA 208
+ PD IL L+ +SIPV+ K R +EA + + + E G+ A+ VHGRT+A
Sbjct: 114 MKDPDKVYAILAALVDAVSIPVTVKFRAGWDEAHKNAAVIAQMAEKAGVSAVCVHGRTRA 173
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + + ++IR + + + IPV+ NG
Sbjct: 174 QFYQGKADWDIIRAVKESVGIPVLGNG 200
>gi|432705999|ref|ZP_19941095.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE171]
gi|431241783|gb|ELF36219.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE171]
Length = 321
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|119776357|ref|YP_929097.1| tRNA-dihydrouridine synthase B [Shewanella amazonensis SB2B]
gi|119768857|gb|ABM01428.1| tRNA-dihydrouridine synthase B [Shewanella amazonensis SB2B]
Length = 323
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 114/230 (49%), Gaps = 27/230 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPL 88
+N++I+APM + FR L L YGA + SE L + +L T++ + ++
Sbjct: 9 TNQLIVAPMAGVTDQAFRNLCLRYGAAMAVSEMLSANPELWDTDKSRQRMAHS------- 61
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMG 147
G R+ +QI ADPE+ AA+ VE IDINMGCP + G
Sbjct: 62 -GEEGIRS---------VQIAGADPEQMAWAARFNVEQGAQIIDINMGCPAKKVNKKQAG 111
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGR 205
+AL+ PD+ IL ++ + +PV+ KIR + + + + E CGI ++ VHGR
Sbjct: 112 SALMQYPDLVEQILRAVVGAVEVPVTLKIRTGWEPEHRNGVQIARIAEDCGIASLAVHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+ + + IR + Q + IPV+ANG ++ ++DY G +L
Sbjct: 172 TRQCMYKGNAEYDTIRAIKQSVSIPVVANGDIVSPEKARFVLDYTGADAL 221
>gi|381394571|ref|ZP_09920284.1| tRNA-dihydrouridine synthase B [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379329826|dbj|GAB55417.1| tRNA-dihydrouridine synthase B [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 332
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +ILAPM + PFR L + GA LV SE L + K+ KT + +N + + +
Sbjct: 10 NNLILAPMAGVTDRPFRRLCSEMGAGLVVSEMLSSNPKVWKTAKSLNRMNH--------E 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G R+ +QI ++P EAA+ VE IDINMGCP + G+
Sbjct: 62 GESGIRS---------IQIAGSEPSLMAEAAQFNVERGAQIIDINMGCPAKKVNKKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL P++ NIL ++ ++ +PV+ KIR + + I + K + GI++I VHGRT
Sbjct: 113 ALLQQPELVANILDAVVKSVDVPVTLKIRTGWDVDNRNGIHIAKIAQDKGIVSIAVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+ + + I+ + ++ IPVIANG +KE++ Y G
Sbjct: 173 RTCMFKGHAEYDTIKAIKANVSIPVIANGDIKNALQAKEVLHYTG 217
>gi|417839103|ref|ZP_12485308.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus M19107]
gi|341954932|gb|EGT81399.1| tRNA-dihydrouridine synthase B [Haemophilus haemolyticus M19107]
Length = 326
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL +++ +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVAAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K +DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFALDYTGA 218
>gi|374307804|ref|YP_005054235.1| TIM-barrel protein, NifR3 family [Filifactor alocis ATCC 35896]
gi|291166185|gb|EFE28231.1| TIM-barrel protein, NifR3 family [Filifactor alocis ATCC 35896]
Length = 319
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 28 NYSNK--IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
NY K I LAPM +N PFRL+ YGA L Y+E + L + ++ V
Sbjct: 5 NYETKGNIFLAPMAGINDFPFRLMCHRYGAVLTYTEMINAKALCYGDENTWKMMQ----V 60
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSLT 143
P +G V +QI +PE EA +K+E IDINMGCP +
Sbjct: 61 HPDEGDVA------------IQIFGNEPEFIAEAVRKIEQLSRFVLIDINMGCPAPKVVK 108
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIG 201
G G+AL+ P++A I+ T N +PV+ K R + + + + K+++ G A+
Sbjct: 109 NGDGSALMKKPELAQKIVETAKQNTILPVTVKFRKGWDSTQVNALEFAKQMQEAGADAVT 168
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
VHGRT+ E +++ + + L IPVI NG K+
Sbjct: 169 VHGRTREEFYSGVADWNIVKEIKKALYIPVIGNGDIKD 206
>gi|150396307|ref|YP_001326774.1| nifR3 family TIM-barrel protein [Sinorhizobium medicae WSM419]
gi|150027822|gb|ABR59939.1| putative TIM-barrel protein, nifR3 family [Sinorhizobium medicae
WSM419]
Length = 337
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 20/220 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
N+ N++ LAPM + LPFR+LA +GA V +E + +LV + L +
Sbjct: 16 NVQIRNRVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLKN-SGI 74
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLTG 144
DP I+Q+ + EAA+ VE + A I DINMGCP + G
Sbjct: 75 DPH----------------IVQLAGREAHWMAEAARIVEANGADIIDINMGCPAKKVTGG 118
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGV 202
G+AL+ PD A +++ + ++PV+ K+R+ +E A + +R E G+ AI +
Sbjct: 119 YSGSALMRDPDHALSLIEATVKAATVPVTLKMRLGWDENSINAPLIARRAEEAGVKAITI 178
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
HGRT+ + + + IR++ + +P+IANG + D
Sbjct: 179 HGRTRMQFYNGKADWDAIRSVREVTSVPLIANGDVDSVAD 218
>gi|15803794|ref|NP_289828.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EDL933]
gi|15833386|ref|NP_312159.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
Sakai]
gi|16131148|ref|NP_417726.1| tRNA-dihydrouridine synthase B [Escherichia coli str. K-12 substr.
MG1655]
gi|26249852|ref|NP_755892.1| tRNA-dihydrouridine synthase B [Escherichia coli CFT073]
gi|74313789|ref|YP_312208.1| tRNA-dihydrouridine synthase B [Shigella sonnei Ss046]
gi|82545631|ref|YP_409578.1| tRNA-dihydrouridine synthase B [Shigella boydii Sb227]
gi|82778569|ref|YP_404918.1| tRNA-dihydrouridine synthase B [Shigella dysenteriae Sd197]
gi|91212691|ref|YP_542677.1| tRNA-dihydrouridine synthase B [Escherichia coli UTI89]
gi|110643504|ref|YP_671234.1| tRNA-dihydrouridine synthase B [Escherichia coli 536]
gi|117625551|ref|YP_858874.1| tRNA-dihydrouridine synthase B [Escherichia coli APEC O1]
gi|157156175|ref|YP_001464734.1| tRNA-dihydrouridine synthase B [Escherichia coli E24377A]
gi|157162741|ref|YP_001460059.1| tRNA-dihydrouridine synthase B [Escherichia coli HS]
gi|168752560|ref|ZP_02777582.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4113]
gi|168758937|ref|ZP_02783944.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4401]
gi|168764879|ref|ZP_02789886.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4501]
gi|168769123|ref|ZP_02794130.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4486]
gi|168777676|ref|ZP_02802683.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4196]
gi|168783829|ref|ZP_02808836.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4076]
gi|168786153|ref|ZP_02811160.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC869]
gi|168802602|ref|ZP_02827609.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC508]
gi|170018497|ref|YP_001723451.1| tRNA-dihydrouridine synthase B [Escherichia coli ATCC 8739]
gi|170082788|ref|YP_001732108.1| tRNA-dihydrouridine synthase B [Escherichia coli str. K-12 substr.
DH10B]
gi|170680881|ref|YP_001745531.1| tRNA-dihydrouridine synthase B [Escherichia coli SMS-3-5]
gi|170765665|ref|ZP_02900476.1| tRNA-dihydrouridine synthase B [Escherichia albertii TW07627]
gi|187734046|ref|YP_001881952.1| tRNA-dihydrouridine synthase B [Shigella boydii CDC 3083-94]
gi|188491759|ref|ZP_02999029.1| tRNA-dihydrouridine synthase B [Escherichia coli 53638]
gi|191169157|ref|ZP_03030915.1| tRNA-dihydrouridine synthase B [Escherichia coli B7A]
gi|191173814|ref|ZP_03035335.1| tRNA-dihydrouridine synthase B [Escherichia coli F11]
gi|193066463|ref|ZP_03047508.1| tRNA-dihydrouridine synthase B [Escherichia coli E22]
gi|193071520|ref|ZP_03052430.1| tRNA-dihydrouridine synthase B [Escherichia coli E110019]
gi|194435099|ref|ZP_03067336.1| tRNA-dihydrouridine synthase B [Shigella dysenteriae 1012]
gi|194440027|ref|ZP_03072084.1| tRNA-dihydrouridine synthase B [Escherichia coli 101-1]
gi|195940004|ref|ZP_03085386.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4024]
gi|208806407|ref|ZP_03248744.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4206]
gi|208814013|ref|ZP_03255342.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4045]
gi|208821905|ref|ZP_03262225.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4042]
gi|209396246|ref|YP_002272722.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4115]
gi|209920732|ref|YP_002294816.1| tRNA-dihydrouridine synthase B [Escherichia coli SE11]
gi|215488567|ref|YP_002330998.1| tRNA-dihydrouridine synthase B [Escherichia coli O127:H6 str.
E2348/69]
gi|217327776|ref|ZP_03443859.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
TW14588]
gi|218550544|ref|YP_002384335.1| tRNA-dihydrouridine synthase B [Escherichia fergusonii ATCC 35469]
gi|218555824|ref|YP_002388737.1| tRNA-dihydrouridine synthase B [Escherichia coli IAI1]
gi|218560329|ref|YP_002393242.1| tRNA-dihydrouridine synthase B [Escherichia coli S88]
gi|218691551|ref|YP_002399763.1| tRNA-dihydrouridine synthase B [Escherichia coli ED1a]
gi|218696959|ref|YP_002404626.1| tRNA-dihydrouridine synthase B [Escherichia coli 55989]
gi|218702033|ref|YP_002409662.1| tRNA-dihydrouridine synthase B [Escherichia coli IAI39]
gi|218706874|ref|YP_002414393.1| tRNA -dihydrouridine synthase B [Escherichia coli UMN026]
gi|222157971|ref|YP_002558110.1| tRNA-dihydrouridine synthase B [Escherichia coli LF82]
gi|227887986|ref|ZP_04005791.1| tRNA-dihydrouridine synthase B [Escherichia coli 83972]
gi|237705982|ref|ZP_04536463.1| tRNA-dihydrouridine synthase B [Escherichia sp. 3_2_53FAA]
gi|238902359|ref|YP_002928155.1| tRNA-dihydrouridine synthase B [Escherichia coli BW2952]
gi|251786521|ref|YP_003000825.1| tRNA dihydrouridine synthase [Escherichia coli BL21(DE3)]
gi|253771910|ref|YP_003034741.1| tRNA-dihydrouridine synthase B [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163195|ref|YP_003046303.1| tRNA-dihydrouridine synthase B [Escherichia coli B str. REL606]
gi|254289945|ref|YP_003055693.1| tRNA-dihydrouridine synthase B [Escherichia coli BL21(DE3)]
gi|254795203|ref|YP_003080040.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
TW14359]
gi|260846065|ref|YP_003223843.1| tRNA-dihydrouridine synthase B [Escherichia coli O103:H2 str.
12009]
gi|260857387|ref|YP_003231278.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
11368]
gi|260870011|ref|YP_003236413.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H- str.
11128]
gi|261255121|ref|ZP_05947654.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
FRIK966]
gi|291284627|ref|YP_003501445.1| tRNA-dihydrouridine synthase B [Escherichia coli O55:H7 str.
CB9615]
gi|293406862|ref|ZP_06650788.1| tRNA-dihydrouridine synthase B [Escherichia coli FVEC1412]
gi|293412628|ref|ZP_06655351.1| tRNA-dihydrouridine synthase B [Escherichia coli B354]
gi|293416685|ref|ZP_06659324.1| tRNA-dihydrouridine synthase B [Escherichia coli B185]
gi|293449583|ref|ZP_06664004.1| tRNA-dihydrouridine synthase B [Escherichia coli B088]
gi|297519369|ref|ZP_06937755.1| tRNA-dihydrouridine synthase B [Escherichia coli OP50]
gi|298382603|ref|ZP_06992200.1| tRNA-dihydrouridine synthase B [Escherichia coli FVEC1302]
gi|300824972|ref|ZP_07105071.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 119-7]
gi|300898032|ref|ZP_07116403.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 198-1]
gi|300904454|ref|ZP_07122300.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 84-1]
gi|300917419|ref|ZP_07134084.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 115-1]
gi|300925995|ref|ZP_07141818.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 182-1]
gi|300928705|ref|ZP_07144223.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 187-1]
gi|300937387|ref|ZP_07152222.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 21-1]
gi|300948346|ref|ZP_07162454.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 116-1]
gi|300958258|ref|ZP_07170405.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 175-1]
gi|300979714|ref|ZP_07174664.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 200-1]
gi|300991058|ref|ZP_07179479.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 45-1]
gi|301022203|ref|ZP_07186118.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 69-1]
gi|301047884|ref|ZP_07194931.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 185-1]
gi|301304273|ref|ZP_07210387.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 124-1]
gi|301647036|ref|ZP_07246868.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 146-1]
gi|306816397|ref|ZP_07450529.1| tRNA-dihydrouridine synthase B [Escherichia coli NC101]
gi|307314983|ref|ZP_07594571.1| TIM-barrel protein, nifR3 family [Escherichia coli W]
gi|309785585|ref|ZP_07680216.1| TIM-barrel , nifR3 family protein [Shigella dysenteriae 1617]
gi|309793839|ref|ZP_07688265.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 145-7]
gi|331643960|ref|ZP_08345091.1| tRNA-dihydrouridine synthase B [Escherichia coli H736]
gi|331649061|ref|ZP_08350149.1| tRNA-dihydrouridine synthase B [Escherichia coli M605]
gi|331654858|ref|ZP_08355858.1| tRNA-dihydrouridine synthase B [Escherichia coli M718]
gi|331659549|ref|ZP_08360491.1| tRNA-dihydrouridine synthase B [Escherichia coli TA206]
gi|331664869|ref|ZP_08365774.1| tRNA-dihydrouridine synthase B [Escherichia coli TA143]
gi|331670084|ref|ZP_08370929.1| tRNA-dihydrouridine synthase B [Escherichia coli TA271]
gi|331679333|ref|ZP_08380005.1| tRNA-dihydrouridine synthase B [Escherichia coli H591]
gi|331684900|ref|ZP_08385492.1| tRNA-dihydrouridine synthase B [Escherichia coli H299]
gi|332279908|ref|ZP_08392321.1| tRNA-dihydrouridine synthase B [Shigella sp. D9]
gi|366158948|ref|ZP_09458810.1| tRNA-dihydrouridine synthase B [Escherichia sp. TW09308]
gi|378711293|ref|YP_005276186.1| nifR3 family TIM-barrel protein [Escherichia coli KO11FL]
gi|383180436|ref|YP_005458441.1| tRNA-dihydrouridine synthase B [Shigella sonnei 53G]
gi|386282360|ref|ZP_10060013.1| tRNA-dihydrouridine synthase B [Escherichia sp. 4_1_40B]
gi|386594024|ref|YP_006090424.1| nifR3 family TIM-barrel protein [Escherichia coli DH1]
gi|386601286|ref|YP_006102792.1| tRNA-dihydrouridine synthase B [Escherichia coli IHE3034]
gi|386626072|ref|YP_006145800.1| tRNA-dihydrouridine synthase B [Escherichia coli O7:K1 str. CE10]
gi|386631146|ref|YP_006150866.1| tRNA-dihydrouridine synthase B [Escherichia coli str. 'clone D i2']
gi|386636066|ref|YP_006155785.1| tRNA-dihydrouridine synthase B [Escherichia coli str. 'clone D
i14']
gi|386640862|ref|YP_006107660.1| tRNA-dihydrouridine synthase B [Escherichia coli ABU 83972]
gi|386699780|ref|YP_006163617.1| tRNA-dihydrouridine synthase B [Escherichia coli KO11FL]
gi|386711159|ref|YP_006174880.1| tRNA-dihydrouridine synthase B [Escherichia coli W]
gi|387508658|ref|YP_006160914.1| tRNA-dihydrouridine synthase B [Escherichia coli O55:H7 str.
RM12579]
gi|387608974|ref|YP_006097830.1| tRNA-dihydrouridine synthase B [Escherichia coli 042]
gi|387613943|ref|YP_006117059.1| tRNA-dihydrouridine synthase B [Escherichia coli ETEC H10407]
gi|387618556|ref|YP_006121578.1| tRNA-dihydrouridine synthase B [Escherichia coli O83:H1 str. NRG
857C]
gi|387622919|ref|YP_006130547.1| tRNA-dihydrouridine synthase B [Escherichia coli DH1]
gi|387831145|ref|YP_003351082.1| putative tRNA-dihydrouridine synthase B [Escherichia coli SE15]
gi|387884436|ref|YP_006314738.1| tRNA-dihydrouridine synthase B [Escherichia coli Xuzhou21]
gi|388479250|ref|YP_491442.1| tRNA-dihydrouridine synthase B [Escherichia coli str. K-12 substr.
W3110]
gi|407471229|ref|YP_006782328.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480114|ref|YP_006777263.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
2011C-3493]
gi|410480675|ref|YP_006768221.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415861886|ref|ZP_11535496.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 85-1]
gi|416260397|ref|ZP_11640247.1| tRNA dihydrouridine synthase B [Shigella dysenteriae CDC 74-1112]
gi|416777760|ref|ZP_11875405.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
G5101]
gi|416789147|ref|ZP_11880329.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H- str.
493-89]
gi|416822196|ref|ZP_11894703.1| tRNA-dihydrouridine synthase B [Escherichia coli O55:H7 str. USDA
5905]
gi|417757609|ref|ZP_12405675.1| tRNA dihydrouridine synthase [Escherichia coli DEC2B]
gi|417806905|ref|ZP_12453837.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
LB226692]
gi|417834652|ref|ZP_12481094.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
01-09591]
gi|417866069|ref|ZP_12511112.1| hypothetical protein C22711_3000 [Escherichia coli O104:H4 str.
C227-11]
gi|417946379|ref|ZP_12589598.1| tRNA-dihydrouridine synthase B [Escherichia coli XH140A]
gi|417978180|ref|ZP_12618952.1| tRNA-dihydrouridine synthase B [Escherichia coli XH001]
gi|418942503|ref|ZP_13495774.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H43 str. T22]
gi|418956352|ref|ZP_13508278.1| tRNA-dihydrouridine synthase B [Escherichia coli J53]
gi|419041587|ref|ZP_13588606.1| tRNA dihydrouridine synthase [Escherichia coli DEC2E]
gi|419702092|ref|ZP_14229690.1| tRNA-dihydrouridine synthase B [Escherichia coli SCI-07]
gi|419810499|ref|ZP_14335379.1| tRNA-dihydrouridine synthase B [Escherichia coli O32:H37 str. P4]
gi|419866731|ref|ZP_14389080.1| tRNA-dihydrouridine synthase B [Escherichia coli O103:H25 str.
CVM9340]
gi|419868185|ref|ZP_14390477.1| tRNA-dihydrouridine synthase B [Escherichia coli O103:H2 str.
CVM9450]
gi|419874042|ref|ZP_14396000.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H11 str.
CVM9534]
gi|419883454|ref|ZP_14404553.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H11 str.
CVM9545]
gi|419890751|ref|ZP_14410948.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H8 str.
CVM9570]
gi|419898577|ref|ZP_14418126.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H8 str.
CVM9574]
gi|419903830|ref|ZP_14422843.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CVM9942]
gi|419907654|ref|ZP_14426455.1| nifR3 family TIM-barrel protein [Escherichia coli O26:H11 str.
CVM10026]
gi|419913597|ref|ZP_14432028.1| tRNA-dihydrouridine synthase B [Escherichia coli KD1]
gi|419927694|ref|ZP_14445428.1| tRNA-dihydrouridine synthase B [Escherichia coli 541-1]
gi|419935180|ref|ZP_14452267.1| tRNA-dihydrouridine synthase B [Escherichia coli 576-1]
gi|419939245|ref|ZP_14456042.1| tRNA-dihydrouridine synthase B [Escherichia coli 75]
gi|419946276|ref|ZP_14462693.1| tRNA-dihydrouridine synthase B [Escherichia coli HM605]
gi|420088008|ref|ZP_14599934.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H8 str.
CVM9602]
gi|420098630|ref|ZP_14609889.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H8 str.
CVM9634]
gi|420098857|ref|ZP_14610104.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H11 str.
CVM9455]
gi|420105766|ref|ZP_14616199.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H11 str.
CVM9553]
gi|420118289|ref|ZP_14627622.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CVM10021]
gi|420123623|ref|ZP_14632507.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CVM10030]
gi|420130230|ref|ZP_14638734.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CVM10224]
gi|420135050|ref|ZP_14643144.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CVM9952]
gi|420337398|ref|ZP_14838960.1| tRNA-dihydrouridine synthase B [Shigella flexneri K-315]
gi|420354759|ref|ZP_14855839.1| tRNA-dihydrouridine synthase B [Shigella boydii 4444-74]
gi|420382229|ref|ZP_14881667.1| tRNA-dihydrouridine synthase B [Shigella dysenteriae 225-75]
gi|421684449|ref|ZP_16124235.1| tRNA dihydrouridine synthase [Shigella flexneri 1485-80]
gi|422332733|ref|ZP_16413746.1| tRNA-dihydrouridine synthase B [Escherichia coli 4_1_47FAA]
gi|422351180|ref|ZP_16432012.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 117-3]
gi|422357143|ref|ZP_16437810.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 110-3]
gi|422362445|ref|ZP_16443016.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 153-1]
gi|422367335|ref|ZP_16447787.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 16-3]
gi|422372758|ref|ZP_16453103.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 60-1]
gi|422379689|ref|ZP_16459877.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 57-2]
gi|422749637|ref|ZP_16803548.1| dihydrouridine synthase [Escherichia coli H252]
gi|422753797|ref|ZP_16807623.1| dihydrouridine synthase [Escherichia coli H263]
gi|422760722|ref|ZP_16814482.1| dihydrouridine synthase [Escherichia coli E1167]
gi|422767251|ref|ZP_16820977.1| dihydrouridine synthase [Escherichia coli E1520]
gi|422770870|ref|ZP_16824560.1| dihydrouridine synthase [Escherichia coli E482]
gi|422775493|ref|ZP_16829148.1| dihydrouridine synthase [Escherichia coli H120]
gi|422779777|ref|ZP_16832562.1| dihydrouridine synthase [Escherichia coli TW10509]
gi|422787213|ref|ZP_16839951.1| dihydrouridine synthase [Escherichia coli H489]
gi|422793119|ref|ZP_16845816.1| dihydrouridine synthase [Escherichia coli TA007]
gi|422801204|ref|ZP_16849701.1| dihydrouridine synthase [Escherichia coli M863]
gi|422803876|ref|ZP_16852308.1| dihydrouridine synthase [Escherichia fergusonii B253]
gi|422818425|ref|ZP_16866638.1| tRNA-dihydrouridine synthase B [Escherichia coli M919]
gi|422827334|ref|ZP_16875508.1| hypothetical protein ESNG_00013 [Escherichia coli B093]
gi|422833396|ref|ZP_16881462.1| tRNA-dihydrouridine synthase B [Escherichia coli E101]
gi|422841274|ref|ZP_16889244.1| tRNA-dihydrouridine synthase B [Escherichia coli H397]
gi|422960025|ref|ZP_16971660.1| tRNA-dihydrouridine synthase B [Escherichia coli H494]
gi|422969585|ref|ZP_16973378.1| tRNA-dihydrouridine synthase B [Escherichia coli TA124]
gi|422989457|ref|ZP_16980229.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
C227-11]
gi|422996352|ref|ZP_16987115.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
C236-11]
gi|423001501|ref|ZP_16992254.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
09-7901]
gi|423005161|ref|ZP_16995906.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
04-8351]
gi|423011666|ref|ZP_17002399.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-3677]
gi|423020894|ref|ZP_17011601.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4404]
gi|423026059|ref|ZP_17016754.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4522]
gi|423031878|ref|ZP_17022564.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4623]
gi|423034750|ref|ZP_17025428.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423039878|ref|ZP_17030547.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423046562|ref|ZP_17037221.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055099|ref|ZP_17043905.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057091|ref|ZP_17045890.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423707553|ref|ZP_17681933.1| tRNA-dihydrouridine synthase B [Escherichia coli B799]
gi|424746953|ref|ZP_18175170.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424761069|ref|ZP_18188654.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424767597|ref|ZP_18194914.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H8 str.
CFSAN001632]
gi|427806458|ref|ZP_18973525.1| putative dehydrogenase [Escherichia coli chi7122]
gi|427811049|ref|ZP_18978114.1| putative dehydrogenase [Escherichia coli]
gi|429720922|ref|ZP_19255844.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429772820|ref|ZP_19304838.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02030]
gi|429778186|ref|ZP_19310154.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02033-1]
gi|429786492|ref|ZP_19318385.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02092]
gi|429787436|ref|ZP_19319326.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02093]
gi|429793232|ref|ZP_19325078.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02281]
gi|429799811|ref|ZP_19331605.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02318]
gi|429803427|ref|ZP_19335185.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02913]
gi|429808068|ref|ZP_19339788.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-03439]
gi|429813767|ref|ZP_19345444.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-04080]
gi|429818978|ref|ZP_19350610.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-03943]
gi|429905326|ref|ZP_19371303.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429909462|ref|ZP_19375425.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429915334|ref|ZP_19381280.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429920380|ref|ZP_19386308.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429926184|ref|ZP_19392096.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930119|ref|ZP_19396020.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429936658|ref|ZP_19402543.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429942339|ref|ZP_19408212.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945022|ref|ZP_19410883.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429952578|ref|ZP_19418423.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429955933|ref|ZP_19421763.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432355259|ref|ZP_19598527.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE2]
gi|432359713|ref|ZP_19602927.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE4]
gi|432366710|ref|ZP_19609828.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE10]
gi|432378440|ref|ZP_19621424.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE12]
gi|432382989|ref|ZP_19625928.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE15]
gi|432389020|ref|ZP_19631900.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE16]
gi|432393843|ref|ZP_19636667.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE21]
gi|432399212|ref|ZP_19641987.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE25]
gi|432403634|ref|ZP_19646379.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE26]
gi|432408337|ref|ZP_19651041.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE28]
gi|432413487|ref|ZP_19656142.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE39]
gi|432418787|ref|ZP_19661381.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE44]
gi|432423672|ref|ZP_19666211.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE178]
gi|432427895|ref|ZP_19670379.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE181]
gi|432433478|ref|ZP_19675903.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE187]
gi|432438074|ref|ZP_19680458.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE188]
gi|432447870|ref|ZP_19690167.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE191]
gi|432451497|ref|ZP_19693754.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE193]
gi|432458386|ref|ZP_19700563.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE201]
gi|432462598|ref|ZP_19704732.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE204]
gi|432467577|ref|ZP_19709656.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE205]
gi|432472612|ref|ZP_19714650.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE206]
gi|432477591|ref|ZP_19719581.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE208]
gi|432482586|ref|ZP_19724537.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE210]
gi|432487022|ref|ZP_19728931.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE212]
gi|432497379|ref|ZP_19739172.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE214]
gi|432501821|ref|ZP_19743573.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE216]
gi|432506137|ref|ZP_19747857.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE220]
gi|432515656|ref|ZP_19752872.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE224]
gi|432519453|ref|ZP_19756633.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE228]
gi|432525592|ref|ZP_19762711.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE230]
gi|432528095|ref|ZP_19765172.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE233]
gi|432535606|ref|ZP_19772566.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE234]
gi|432539611|ref|ZP_19776505.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE235]
gi|432544996|ref|ZP_19781831.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE236]
gi|432550478|ref|ZP_19787238.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE237]
gi|432555329|ref|ZP_19792048.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE47]
gi|432560534|ref|ZP_19797190.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE49]
gi|432565631|ref|ZP_19802192.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE51]
gi|432570488|ref|ZP_19806995.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE53]
gi|432575459|ref|ZP_19811933.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE55]
gi|432577493|ref|ZP_19813942.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE56]
gi|432581543|ref|ZP_19817957.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE57]
gi|432589643|ref|ZP_19825996.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE58]
gi|432594459|ref|ZP_19830772.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE60]
gi|432599512|ref|ZP_19835783.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE62]
gi|432604091|ref|ZP_19840322.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE66]
gi|432609299|ref|ZP_19845481.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE67]
gi|432613271|ref|ZP_19849429.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE72]
gi|432618502|ref|ZP_19854607.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE75]
gi|432623619|ref|ZP_19859638.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE76]
gi|432633131|ref|ZP_19869052.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE80]
gi|432638466|ref|ZP_19874332.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE81]
gi|432642821|ref|ZP_19878647.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE83]
gi|432647938|ref|ZP_19883724.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE86]
gi|432652858|ref|ZP_19888604.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE87]
gi|432657501|ref|ZP_19893198.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE93]
gi|432662470|ref|ZP_19898105.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE111]
gi|432667818|ref|ZP_19903391.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE116]
gi|432672350|ref|ZP_19907874.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE119]
gi|432676382|ref|ZP_19911831.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE142]
gi|432687078|ref|ZP_19922369.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE156]
gi|432696131|ref|ZP_19931324.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE162]
gi|432700782|ref|ZP_19935927.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE169]
gi|432715112|ref|ZP_19950140.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE8]
gi|432720387|ref|ZP_19955352.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE9]
gi|432738751|ref|ZP_19973495.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE42]
gi|432756193|ref|ZP_19990738.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE22]
gi|432766659|ref|ZP_20001075.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE48]
gi|432767625|ref|ZP_20002019.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE50]
gi|432780273|ref|ZP_20014494.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE59]
gi|432785231|ref|ZP_20019409.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE63]
gi|432789266|ref|ZP_20023394.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE65]
gi|432794477|ref|ZP_20028559.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE78]
gi|432795994|ref|ZP_20030035.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE79]
gi|432810987|ref|ZP_20044845.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE101]
gi|432817027|ref|ZP_20050788.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE115]
gi|432824156|ref|ZP_20057826.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE123]
gi|432846307|ref|ZP_20078988.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE141]
gi|432854397|ref|ZP_20082942.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE144]
gi|432877282|ref|ZP_20095049.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE154]
gi|432906908|ref|ZP_20115447.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE194]
gi|432914748|ref|ZP_20120164.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE190]
gi|432922279|ref|ZP_20125243.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE173]
gi|432929078|ref|ZP_20130179.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE175]
gi|432939887|ref|ZP_20137990.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE183]
gi|432949376|ref|ZP_20144242.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE196]
gi|432963711|ref|ZP_20153130.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE202]
gi|432969321|ref|ZP_20158233.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE203]
gi|432973539|ref|ZP_20162385.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE207]
gi|432975466|ref|ZP_20164301.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE209]
gi|432982710|ref|ZP_20171481.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE211]
gi|432987113|ref|ZP_20175826.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE215]
gi|432997026|ref|ZP_20185609.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE218]
gi|433001623|ref|ZP_20190142.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE223]
gi|433006846|ref|ZP_20195270.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE227]
gi|433009461|ref|ZP_20197874.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE229]
gi|433025130|ref|ZP_20213104.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE106]
gi|433035144|ref|ZP_20222843.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE112]
gi|433040263|ref|ZP_20227856.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE113]
gi|433049700|ref|ZP_20237035.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE120]
gi|433054889|ref|ZP_20242056.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE122]
gi|433059746|ref|ZP_20246783.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE124]
gi|433064707|ref|ZP_20251618.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE125]
gi|433069574|ref|ZP_20256349.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE128]
gi|433074516|ref|ZP_20261158.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE129]
gi|433079451|ref|ZP_20265971.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE131]
gi|433088915|ref|ZP_20275281.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE137]
gi|433098066|ref|ZP_20284242.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE139]
gi|433107514|ref|ZP_20293479.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE148]
gi|433117141|ref|ZP_20302927.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE153]
gi|433126830|ref|ZP_20312377.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE160]
gi|433131813|ref|ZP_20317243.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE163]
gi|433136500|ref|ZP_20321834.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE166]
gi|433140894|ref|ZP_20326140.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE167]
gi|433145869|ref|ZP_20331003.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE168]
gi|433150899|ref|ZP_20335900.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE174]
gi|433155411|ref|ZP_20340344.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE176]
gi|433160366|ref|ZP_20345193.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE177]
gi|433165252|ref|ZP_20349983.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE179]
gi|433170227|ref|ZP_20354850.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE180]
gi|433175146|ref|ZP_20359659.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE232]
gi|433180086|ref|ZP_20364472.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE82]
gi|433184979|ref|ZP_20369217.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE85]
gi|433190070|ref|ZP_20374159.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE88]
gi|433200009|ref|ZP_20383897.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE94]
gi|433204982|ref|ZP_20388733.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE95]
gi|433209388|ref|ZP_20393056.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE97]
gi|433214239|ref|ZP_20397822.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE99]
gi|433325388|ref|ZP_20402501.1| tRNA-dihydrouridine synthase B [Escherichia coli J96]
gi|443619329|ref|YP_007383185.1| tRNA-dihydrouridine synthase B [Escherichia coli APEC O78]
gi|450193358|ref|ZP_21892015.1| tRNA-dihydrouridine synthase B [Escherichia coli SEPT362]
gi|450222820|ref|ZP_21896975.1| tRNA-dihydrouridine synthase B [Escherichia coli O08]
gi|450250990|ref|ZP_21901733.1| tRNA-dihydrouridine synthase B [Escherichia coli S17]
gi|452968258|ref|ZP_21966485.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4009]
gi|78100049|sp|P0ABT7.1|DUSB_ECO57 RecName: Full=tRNA-dihydrouridine synthase B
gi|78100050|sp|P0ABT6.1|DUSB_ECOL6 RecName: Full=tRNA-dihydrouridine synthase B
gi|78100051|sp|P0ABT5.1|DUSB_ECOLI RecName: Full=tRNA-dihydrouridine synthase B
gi|12517887|gb|AAG58388.1|AE005553_10 putative dehydrogenase [Escherichia coli O157:H7 str. EDL933]
gi|26110280|gb|AAN82466.1|AE016767_226 Hypothetical protein yhdG [Escherichia coli CFT073]
gi|145976|gb|AAA23782.1| ORF1 [Escherichia coli]
gi|606201|gb|AAA58064.1| ORF_o321 [Escherichia coli str. K-12 substr. MG1655]
gi|1789660|gb|AAC76292.1| tRNA-dihydrouridine synthase B [Escherichia coli str. K-12 substr.
MG1655]
gi|13363605|dbj|BAB37555.1| putative dehydrogenase [Escherichia coli O157:H7 str. Sakai]
gi|73857266|gb|AAZ89973.1| putative dehydrogenase [Shigella sonnei Ss046]
gi|81242717|gb|ABB63427.1| putative dehydrogenase [Shigella dysenteriae Sd197]
gi|81247042|gb|ABB67750.1| putative dehydrogenase [Shigella boydii Sb227]
gi|85676051|dbj|BAE77301.1| tRNA-dihydrouridine synthase B [Escherichia coli str. K12 substr.
W3110]
gi|91074265|gb|ABE09146.1| putative dehydrogenase [Escherichia coli UTI89]
gi|110345096|gb|ABG71333.1| tRNA-dihydrouridine synthase B [Escherichia coli 536]
gi|115514675|gb|ABJ02750.1| tRNA-dihydrouridine synthase B [Escherichia coli APEC O1]
gi|157068421|gb|ABV07676.1| tRNA-dihydrouridine synthase B [Escherichia coli HS]
gi|157078205|gb|ABV17913.1| tRNA-dihydrouridine synthase B [Escherichia coli E24377A]
gi|169753425|gb|ACA76124.1| TIM-barrel protein, nifR3 family [Escherichia coli ATCC 8739]
gi|169890623|gb|ACB04330.1| tRNA-dihydrouridine synthase B [Escherichia coli str. K-12 substr.
DH10B]
gi|170124811|gb|EDS93742.1| tRNA-dihydrouridine synthase B [Escherichia albertii TW07627]
gi|170518599|gb|ACB16777.1| tRNA-dihydrouridine synthase B [Escherichia coli SMS-3-5]
gi|187431038|gb|ACD10312.1| tRNA-dihydrouridine synthase B [Shigella boydii CDC 3083-94]
gi|187767124|gb|EDU30968.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4196]
gi|188013631|gb|EDU51753.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4113]
gi|188486958|gb|EDU62061.1| tRNA-dihydrouridine synthase B [Escherichia coli 53638]
gi|188998885|gb|EDU67871.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4076]
gi|189354344|gb|EDU72763.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4401]
gi|189361809|gb|EDU80228.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4486]
gi|189365202|gb|EDU83618.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4501]
gi|189373964|gb|EDU92380.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC869]
gi|189375438|gb|EDU93854.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC508]
gi|190900799|gb|EDV60590.1| tRNA-dihydrouridine synthase B [Escherichia coli B7A]
gi|190905864|gb|EDV65482.1| tRNA-dihydrouridine synthase B [Escherichia coli F11]
gi|192925892|gb|EDV80541.1| tRNA-dihydrouridine synthase B [Escherichia coli E22]
gi|192955157|gb|EDV85650.1| tRNA-dihydrouridine synthase B [Escherichia coli E110019]
gi|194416661|gb|EDX32793.1| tRNA-dihydrouridine synthase B [Shigella dysenteriae 1012]
gi|194421031|gb|EDX37061.1| tRNA-dihydrouridine synthase B [Escherichia coli 101-1]
gi|208726208|gb|EDZ75809.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4206]
gi|208735290|gb|EDZ83977.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4045]
gi|208742028|gb|EDZ89710.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4042]
gi|209157646|gb|ACI35079.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
EC4115]
gi|209757538|gb|ACI77081.1| putative dehydrogenase [Escherichia coli]
gi|209757540|gb|ACI77082.1| putative dehydrogenase [Escherichia coli]
gi|209757542|gb|ACI77083.1| putative dehydrogenase [Escherichia coli]
gi|209757544|gb|ACI77084.1| putative dehydrogenase [Escherichia coli]
gi|209757546|gb|ACI77085.1| putative dehydrogenase [Escherichia coli]
gi|209913991|dbj|BAG79065.1| putative tRNA-dihydrouridine synthase B [Escherichia coli SE11]
gi|215266639|emb|CAS11078.1| tRNA-dihydrouridine synthase B [Escherichia coli O127:H6 str.
E2348/69]
gi|217320143|gb|EEC28568.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
TW14588]
gi|218353691|emb|CAU99946.1| tRNA-dihydrouridine synthase B [Escherichia coli 55989]
gi|218358085|emb|CAQ90731.1| tRNA-dihydrouridine synthase B [Escherichia fergusonii ATCC 35469]
gi|218362592|emb|CAR00217.1| tRNA-dihydrouridine synthase B [Escherichia coli IAI1]
gi|218367098|emb|CAR04871.1| tRNA-dihydrouridine synthase B [Escherichia coli S88]
gi|218372019|emb|CAR19875.1| tRNA-dihydrouridine synthase B [Escherichia coli IAI39]
gi|218429115|emb|CAR09922.1| tRNA-dihydrouridine synthase B [Escherichia coli ED1a]
gi|218433971|emb|CAR14888.1| tRNA-dihydrouridine synthase B [Escherichia coli UMN026]
gi|222034976|emb|CAP77719.1| tRNA-dihydrouridine synthase B [Escherichia coli LF82]
gi|226899022|gb|EEH85281.1| tRNA-dihydrouridine synthase B [Escherichia sp. 3_2_53FAA]
gi|227835382|gb|EEJ45848.1| tRNA-dihydrouridine synthase B [Escherichia coli 83972]
gi|238863714|gb|ACR65712.1| tRNA-dihydrouridine synthase B [Escherichia coli BW2952]
gi|242378794|emb|CAQ33586.1| tRNA dihydrouridine synthase [Escherichia coli BL21(DE3)]
gi|253322954|gb|ACT27556.1| TIM-barrel protein, nifR3 family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975096|gb|ACT40767.1| tRNA-dihydrouridine synthase B [Escherichia coli B str. REL606]
gi|253979252|gb|ACT44922.1| tRNA-dihydrouridine synthase B [Escherichia coli BL21(DE3)]
gi|254594603|gb|ACT73964.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
TW14359]
gi|257756036|dbj|BAI27538.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
11368]
gi|257761212|dbj|BAI32709.1| tRNA-dihydrouridine synthase B [Escherichia coli O103:H2 str.
12009]
gi|257766367|dbj|BAI37862.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H- str.
11128]
gi|260447713|gb|ACX38135.1| TIM-barrel protein, nifR3 family [Escherichia coli DH1]
gi|281180302|dbj|BAI56632.1| putative tRNA-dihydrouridine synthase B [Escherichia coli SE15]
gi|284923274|emb|CBG36368.1| tRNA-dihydrouridine synthase B [Escherichia coli 042]
gi|290764500|gb|ADD58461.1| tRNA-dihydrouridine synthase B [Escherichia coli O55:H7 str.
CB9615]
gi|291322673|gb|EFE62102.1| tRNA-dihydrouridine synthase B [Escherichia coli B088]
gi|291426868|gb|EFE99900.1| tRNA-dihydrouridine synthase B [Escherichia coli FVEC1412]
gi|291432041|gb|EFF05024.1| tRNA-dihydrouridine synthase B [Escherichia coli B185]
gi|291469399|gb|EFF11890.1| tRNA-dihydrouridine synthase B [Escherichia coli B354]
gi|294493598|gb|ADE92354.1| tRNA-dihydrouridine synthase B [Escherichia coli IHE3034]
gi|298277743|gb|EFI19259.1| tRNA-dihydrouridine synthase B [Escherichia coli FVEC1302]
gi|300300227|gb|EFJ56612.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 185-1]
gi|300307932|gb|EFJ62452.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 200-1]
gi|300315076|gb|EFJ64860.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 175-1]
gi|300358251|gb|EFJ74121.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 198-1]
gi|300397616|gb|EFJ81154.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 69-1]
gi|300403616|gb|EFJ87154.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 84-1]
gi|300406979|gb|EFJ90517.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 45-1]
gi|300415329|gb|EFJ98639.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 115-1]
gi|300417939|gb|EFK01250.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 182-1]
gi|300452135|gb|EFK15755.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 116-1]
gi|300457561|gb|EFK21054.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 21-1]
gi|300463294|gb|EFK26787.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 187-1]
gi|300522538|gb|EFK43607.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 119-7]
gi|300840399|gb|EFK68159.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 124-1]
gi|301074786|gb|EFK89592.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 146-1]
gi|305849962|gb|EFM50421.1| tRNA-dihydrouridine synthase B [Escherichia coli NC101]
gi|306905566|gb|EFN36098.1| TIM-barrel protein, nifR3 family [Escherichia coli W]
gi|307555354|gb|ADN48129.1| tRNA-dihydrouridine synthase B [Escherichia coli ABU 83972]
gi|308122796|gb|EFO60058.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 145-7]
gi|308926705|gb|EFP72181.1| TIM-barrel , nifR3 family protein [Shigella dysenteriae 1617]
gi|309703679|emb|CBJ03020.1| tRNA-dihydrouridine synthase B [Escherichia coli ETEC H10407]
gi|312947817|gb|ADR28644.1| tRNA-dihydrouridine synthase B [Escherichia coli O83:H1 str. NRG
857C]
gi|315137843|dbj|BAJ45002.1| tRNA-dihydrouridine synthase B [Escherichia coli DH1]
gi|315257186|gb|EFU37154.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 85-1]
gi|315289033|gb|EFU48431.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 110-3]
gi|315294811|gb|EFU54154.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 153-1]
gi|315300924|gb|EFU60144.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 16-3]
gi|320177099|gb|EFW52115.1| tRNA dihydrouridine synthase B [Shigella dysenteriae CDC 74-1112]
gi|320640052|gb|EFX09633.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H7 str.
G5101]
gi|320645622|gb|EFX14631.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H- str.
493-89]
gi|320662003|gb|EFX29411.1| tRNA-dihydrouridine synthase B [Escherichia coli O55:H7 str. USDA
5905]
gi|323376854|gb|ADX49122.1| TIM-barrel protein, nifR3 family [Escherichia coli KO11FL]
gi|323936257|gb|EGB32549.1| dihydrouridine synthase [Escherichia coli E1520]
gi|323941647|gb|EGB37826.1| dihydrouridine synthase [Escherichia coli E482]
gi|323946893|gb|EGB42909.1| dihydrouridine synthase [Escherichia coli H120]
gi|323951220|gb|EGB47095.1| dihydrouridine synthase [Escherichia coli H252]
gi|323957592|gb|EGB53306.1| dihydrouridine synthase [Escherichia coli H263]
gi|323961092|gb|EGB56706.1| dihydrouridine synthase [Escherichia coli H489]
gi|323966438|gb|EGB61872.1| dihydrouridine synthase [Escherichia coli M863]
gi|323970325|gb|EGB65595.1| dihydrouridine synthase [Escherichia coli TA007]
gi|323979021|gb|EGB74099.1| dihydrouridine synthase [Escherichia coli TW10509]
gi|324009089|gb|EGB78308.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 57-2]
gi|324015869|gb|EGB85088.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 60-1]
gi|324020742|gb|EGB89961.1| TIM-barrel protein, nifR3 family [Escherichia coli MS 117-3]
gi|324115136|gb|EGC09100.1| dihydrouridine synthase [Escherichia fergusonii B253]
gi|324119440|gb|EGC13323.1| dihydrouridine synthase [Escherichia coli E1167]
gi|331037431|gb|EGI09655.1| tRNA-dihydrouridine synthase B [Escherichia coli H736]
gi|331042808|gb|EGI14950.1| tRNA-dihydrouridine synthase B [Escherichia coli M605]
gi|331048240|gb|EGI20317.1| tRNA-dihydrouridine synthase B [Escherichia coli M718]
gi|331054131|gb|EGI26160.1| tRNA-dihydrouridine synthase B [Escherichia coli TA206]
gi|331058117|gb|EGI30099.1| tRNA-dihydrouridine synthase B [Escherichia coli TA143]
gi|331062997|gb|EGI34911.1| tRNA-dihydrouridine synthase B [Escherichia coli TA271]
gi|331073398|gb|EGI44721.1| tRNA-dihydrouridine synthase B [Escherichia coli H591]
gi|331078515|gb|EGI49721.1| tRNA-dihydrouridine synthase B [Escherichia coli H299]
gi|332102260|gb|EGJ05606.1| tRNA-dihydrouridine synthase B [Shigella sp. D9]
gi|340732796|gb|EGR61932.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
01-09591]
gi|340738362|gb|EGR72611.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
LB226692]
gi|341919358|gb|EGT68970.1| hypothetical protein C22711_3000 [Escherichia coli O104:H4 str.
C227-11]
gi|342361922|gb|EGU26050.1| tRNA-dihydrouridine synthase B [Escherichia coli XH140A]
gi|344192136|gb|EGV46234.1| tRNA-dihydrouridine synthase B [Escherichia coli XH001]
gi|349739808|gb|AEQ14514.1| tRNA-dihydrouridine synthase B [Escherichia coli O7:K1 str. CE10]
gi|354860617|gb|EHF21063.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
C236-11]
gi|354863935|gb|EHF24366.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
C227-11]
gi|354865849|gb|EHF26277.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
04-8351]
gi|354872273|gb|EHF32668.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
09-7901]
gi|354878616|gb|EHF38965.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-3677]
gi|354887159|gb|EHF47436.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4404]
gi|354891049|gb|EHF51285.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4522]
gi|354895464|gb|EHF55651.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4623]
gi|354906948|gb|EHF67019.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354909971|gb|EHF70001.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354912056|gb|EHF72058.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354914805|gb|EHF74787.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354922153|gb|EHF82071.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-4632 C5]
gi|355422045|gb|AER86242.1| tRNA-dihydrouridine synthase B [Escherichia coli str. 'clone D i2']
gi|355426965|gb|AER91161.1| tRNA-dihydrouridine synthase B [Escherichia coli str. 'clone D
i14']
gi|359333450|dbj|BAL39897.1| tRNA-dihydrouridine synthase B [Escherichia coli str. K-12 substr.
MDS42]
gi|371594403|gb|EHN83271.1| tRNA-dihydrouridine synthase B [Escherichia coli H494]
gi|371601058|gb|EHN89826.1| tRNA-dihydrouridine synthase B [Escherichia coli TA124]
gi|371605014|gb|EHN93638.1| tRNA-dihydrouridine synthase B [Escherichia coli H397]
gi|371606258|gb|EHN94855.1| tRNA-dihydrouridine synthase B [Escherichia coli E101]
gi|371616347|gb|EHO04712.1| hypothetical protein ESNG_00013 [Escherichia coli B093]
gi|373246413|gb|EHP65867.1| tRNA-dihydrouridine synthase B [Escherichia coli 4_1_47FAA]
gi|374360652|gb|AEZ42359.1| tRNA-dihydrouridine synthase B [Escherichia coli O55:H7 str.
RM12579]
gi|375322165|gb|EHS67939.1| tRNA-dihydrouridine synthase B [Escherichia coli O157:H43 str. T22]
gi|377871904|gb|EHU36562.1| tRNA dihydrouridine synthase [Escherichia coli DEC2B]
gi|377887213|gb|EHU51691.1| tRNA dihydrouridine synthase [Escherichia coli DEC2E]
gi|380346943|gb|EIA35233.1| tRNA-dihydrouridine synthase B [Escherichia coli SCI-07]
gi|383391307|gb|AFH16265.1| tRNA-dihydrouridine synthase B [Escherichia coli KO11FL]
gi|383406851|gb|AFH13094.1| tRNA-dihydrouridine synthase B [Escherichia coli W]
gi|384380840|gb|EIE38705.1| tRNA-dihydrouridine synthase B [Escherichia coli J53]
gi|385156483|gb|EIF18479.1| tRNA-dihydrouridine synthase B [Escherichia coli O32:H37 str. P4]
gi|385538062|gb|EIF84928.1| tRNA-dihydrouridine synthase B [Escherichia coli M919]
gi|385709927|gb|EIG46920.1| tRNA-dihydrouridine synthase B [Escherichia coli B799]
gi|386120736|gb|EIG69360.1| tRNA-dihydrouridine synthase B [Escherichia sp. 4_1_40B]
gi|386797894|gb|AFJ30928.1| tRNA-dihydrouridine synthase B [Escherichia coli Xuzhou21]
gi|388333993|gb|EIL00601.1| tRNA-dihydrouridine synthase B [Escherichia coli O103:H25 str.
CVM9340]
gi|388345494|gb|EIL11264.1| tRNA-dihydrouridine synthase B [Escherichia coli O103:H2 str.
CVM9450]
gi|388351724|gb|EIL16929.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H11 str.
CVM9534]
gi|388352532|gb|EIL17642.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H8 str.
CVM9570]
gi|388353576|gb|EIL18582.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H8 str.
CVM9574]
gi|388358266|gb|EIL22733.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H11 str.
CVM9545]
gi|388368762|gb|EIL32383.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CVM9942]
gi|388376594|gb|EIL39486.1| nifR3 family TIM-barrel protein [Escherichia coli O26:H11 str.
CVM10026]
gi|388389255|gb|EIL50791.1| tRNA-dihydrouridine synthase B [Escherichia coli KD1]
gi|388405516|gb|EIL65946.1| tRNA-dihydrouridine synthase B [Escherichia coli 576-1]
gi|388407130|gb|EIL67506.1| tRNA-dihydrouridine synthase B [Escherichia coli 541-1]
gi|388408203|gb|EIL68561.1| tRNA-dihydrouridine synthase B [Escherichia coli 75]
gi|388413616|gb|EIL73608.1| tRNA-dihydrouridine synthase B [Escherichia coli HM605]
gi|391259272|gb|EIQ18346.1| tRNA-dihydrouridine synthase B [Shigella flexneri K-315]
gi|391274690|gb|EIQ33494.1| tRNA-dihydrouridine synthase B [Shigella boydii 4444-74]
gi|391298863|gb|EIQ56850.1| tRNA-dihydrouridine synthase B [Shigella dysenteriae 225-75]
gi|394380495|gb|EJE58239.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CVM10224]
gi|394380639|gb|EJE58380.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H8 str.
CVM9634]
gi|394391451|gb|EJE68323.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H8 str.
CVM9602]
gi|394401081|gb|EJE76942.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CVM10021]
gi|394416603|gb|EJE90386.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CVM10030]
gi|394417768|gb|EJE91480.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H11 str.
CVM9553]
gi|394420499|gb|EJE94021.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CVM9952]
gi|394423808|gb|EJE97019.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H11 str.
CVM9455]
gi|404336231|gb|EJZ62693.1| tRNA dihydrouridine synthase [Shigella flexneri 1485-80]
gi|406775837|gb|AFS55261.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052411|gb|AFS72462.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
2011C-3493]
gi|407067264|gb|AFS88311.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
2009EL-2071]
gi|412964640|emb|CCK48569.1| putative dehydrogenase [Escherichia coli chi7122]
gi|412971228|emb|CCJ45883.1| putative dehydrogenase [Escherichia coli]
gi|421944611|gb|EKU01863.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421947573|gb|EKU04645.1| tRNA-dihydrouridine synthase B [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421947868|gb|EKU04925.1| tRNA-dihydrouridine synthase B [Escherichia coli O111:H8 str.
CFSAN001632]
gi|429346664|gb|EKY83443.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02092]
gi|429356643|gb|EKY93318.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02033-1]
gi|429357518|gb|EKY94191.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02030]
gi|429372810|gb|EKZ09359.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02093]
gi|429374751|gb|EKZ11290.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02281]
gi|429378433|gb|EKZ14947.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02318]
gi|429388613|gb|EKZ25038.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-02913]
gi|429391382|gb|EKZ27786.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-03439]
gi|429392391|gb|EKZ28792.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-03943]
gi|429402880|gb|EKZ39170.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
11-04080]
gi|429404076|gb|EKZ40356.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429407739|gb|EKZ43990.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429415186|gb|EKZ51356.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429418640|gb|EKZ54783.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429424907|gb|EKZ61005.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429429097|gb|EKZ65168.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429433760|gb|EKZ69791.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429435304|gb|EKZ71323.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429441046|gb|EKZ77020.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429445984|gb|EKZ81923.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429455749|gb|EKZ91604.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429459464|gb|EKZ95283.1| tRNA-dihydrouridine synthase B [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430873487|gb|ELB97061.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE2]
gi|430874752|gb|ELB98308.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE4]
gi|430892049|gb|ELC14570.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE10]
gi|430896552|gb|ELC18787.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE12]
gi|430904490|gb|ELC26199.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE16]
gi|430906049|gb|ELC27657.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE15]
gi|430913817|gb|ELC34938.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE25]
gi|430915522|gb|ELC36601.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE21]
gi|430924020|gb|ELC44753.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE26]
gi|430928338|gb|ELC48889.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE28]
gi|430934012|gb|ELC54403.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE39]
gi|430936951|gb|ELC57216.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE44]
gi|430942981|gb|ELC63112.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE178]
gi|430951660|gb|ELC70880.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE187]
gi|430952556|gb|ELC71620.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE181]
gi|430961299|gb|ELC79346.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE188]
gi|430971841|gb|ELC88850.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE191]
gi|430977926|gb|ELC94749.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE193]
gi|430980598|gb|ELC97358.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE201]
gi|430986529|gb|ELD03100.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE204]
gi|430992063|gb|ELD08462.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE205]
gi|430996396|gb|ELD12682.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE206]
gi|431002820|gb|ELD18327.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE208]
gi|431005088|gb|ELD20297.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE210]
gi|431014017|gb|ELD27730.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE212]
gi|431021941|gb|ELD35262.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE214]
gi|431026738|gb|ELD39809.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE216]
gi|431036280|gb|ELD47656.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE220]
gi|431039263|gb|ELD50149.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE224]
gi|431048692|gb|ELD58668.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE228]
gi|431049244|gb|ELD59208.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE230]
gi|431058279|gb|ELD67686.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE234]
gi|431061070|gb|ELD70390.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE233]
gi|431067470|gb|ELD76075.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE235]
gi|431072336|gb|ELD80088.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE236]
gi|431078090|gb|ELD85149.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE237]
gi|431082680|gb|ELD88994.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE47]
gi|431089246|gb|ELD95070.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE49]
gi|431090458|gb|ELD96225.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE51]
gi|431098382|gb|ELE03705.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE53]
gi|431106042|gb|ELE10376.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE55]
gi|431112587|gb|ELE16269.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE56]
gi|431119001|gb|ELE22020.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE58]
gi|431121825|gb|ELE24694.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE57]
gi|431126861|gb|ELE29208.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE60]
gi|431129382|gb|ELE31558.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE62]
gi|431136399|gb|ELE38268.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE67]
gi|431138389|gb|ELE40225.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE66]
gi|431147454|gb|ELE48877.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE72]
gi|431152258|gb|ELE53216.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE75]
gi|431157225|gb|ELE57879.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE76]
gi|431168260|gb|ELE68514.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE80]
gi|431169207|gb|ELE69436.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE81]
gi|431178558|gb|ELE78467.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE83]
gi|431179285|gb|ELE79192.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE86]
gi|431188586|gb|ELE88028.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE87]
gi|431188958|gb|ELE88399.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE93]
gi|431197295|gb|ELE96148.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE111]
gi|431198501|gb|ELE97324.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE116]
gi|431208580|gb|ELF06793.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE119]
gi|431211929|gb|ELF09883.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE142]
gi|431220065|gb|ELF17453.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE156]
gi|431232206|gb|ELF27882.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE162]
gi|431241262|gb|ELF35709.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE169]
gi|431253970|gb|ELF47448.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE8]
gi|431261210|gb|ELF53301.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE9]
gi|431280063|gb|ELF71006.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE42]
gi|431300468|gb|ELF90021.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE22]
gi|431308198|gb|ELF96486.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE48]
gi|431322789|gb|ELG10374.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE50]
gi|431325516|gb|ELG12904.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE59]
gi|431328388|gb|ELG15708.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE63]
gi|431336266|gb|ELG23395.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE65]
gi|431338547|gb|ELG25634.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE78]
gi|431350132|gb|ELG36960.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE79]
gi|431360504|gb|ELG47111.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE101]
gi|431362028|gb|ELG48607.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE115]
gi|431378681|gb|ELG63672.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE123]
gi|431393817|gb|ELG77381.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE141]
gi|431398812|gb|ELG82232.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE144]
gi|431418269|gb|ELH00679.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE154]
gi|431429356|gb|ELH11286.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE194]
gi|431436914|gb|ELH18428.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE190]
gi|431437302|gb|ELH18815.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE173]
gi|431442201|gb|ELH23308.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE175]
gi|431454673|gb|ELH35032.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE196]
gi|431461557|gb|ELH41825.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE183]
gi|431469031|gb|ELH48964.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE203]
gi|431472286|gb|ELH52178.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE202]
gi|431479965|gb|ELH59698.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE207]
gi|431487532|gb|ELH67177.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE209]
gi|431489957|gb|ELH69582.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE211]
gi|431496369|gb|ELH75953.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE215]
gi|431503821|gb|ELH82556.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE218]
gi|431505940|gb|ELH84545.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE223]
gi|431511538|gb|ELH89670.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE227]
gi|431522493|gb|ELH99728.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE229]
gi|431532528|gb|ELI09084.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE106]
gi|431547884|gb|ELI22179.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE112]
gi|431549507|gb|ELI23588.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE113]
gi|431562632|gb|ELI35927.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE120]
gi|431567073|gb|ELI40088.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE124]
gi|431567769|gb|ELI40762.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE122]
gi|431579407|gb|ELI51991.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE125]
gi|431580629|gb|ELI53188.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE128]
gi|431584914|gb|ELI56889.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE129]
gi|431594654|gb|ELI64934.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE131]
gi|431602822|gb|ELI72252.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE137]
gi|431613655|gb|ELI82851.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE139]
gi|431625112|gb|ELI93706.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE148]
gi|431632340|gb|ELJ00643.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE153]
gi|431641704|gb|ELJ09439.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE160]
gi|431644550|gb|ELJ12212.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE163]
gi|431654377|gb|ELJ21435.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE166]
gi|431657271|gb|ELJ24238.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE167]
gi|431659078|gb|ELJ25985.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE168]
gi|431668251|gb|ELJ34783.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE174]
gi|431671549|gb|ELJ37830.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE176]
gi|431675149|gb|ELJ41295.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE177]
gi|431685014|gb|ELJ50619.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE179]
gi|431686503|gb|ELJ52069.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE180]
gi|431689686|gb|ELJ55186.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE232]
gi|431698632|gb|ELJ63659.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE82]
gi|431703235|gb|ELJ67924.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE88]
gi|431703591|gb|ELJ68278.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE85]
gi|431717245|gb|ELJ81346.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE95]
gi|431718543|gb|ELJ82617.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE94]
gi|431728741|gb|ELJ92414.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE97]
gi|431732781|gb|ELJ96231.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE99]
gi|432346325|gb|ELL40810.1| tRNA-dihydrouridine synthase B [Escherichia coli J96]
gi|443423837|gb|AGC88741.1| tRNA-dihydrouridine synthase B [Escherichia coli APEC O78]
gi|449314782|gb|EMD04944.1| tRNA-dihydrouridine synthase B [Escherichia coli O08]
gi|449315760|gb|EMD05893.1| tRNA-dihydrouridine synthase B [Escherichia coli S17]
gi|449317865|gb|EMD07949.1| tRNA-dihydrouridine synthase B [Escherichia coli SEPT362]
Length = 321
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|328767911|gb|EGF77959.1| hypothetical protein BATDEDRAFT_13578 [Batrachochytrium
dendrobatidis JAM81]
Length = 296
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 18/208 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S+K ++APMV + +R+L+ YGA L Y+ + + + +T +F PL
Sbjct: 20 SSKYVVAPMVDQSEYAWRILSRRYGAQLCYTPMFHAKLFSEHHKYRKQVFSTGEFDRPL- 78
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
I+Q DPE L AAK VE AID+N+GCP+ + G G+
Sbjct: 79 ---------------IVQFCANDPETLLSAAKLVEAQCDAIDLNLGCPQGIAKKGHYGSF 123
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ +++ + ++S+P++CKIR+F + TI L+ G + VHGR + +
Sbjct: 124 LQDEWDLIASMVKAVHEHISVPITCKIRIFPDVKKTIEYALMLQNAGCQLLTVHGRLREQ 183
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANG 235
+ + + IR + + L IPV ANG
Sbjct: 184 KGQLTGLADWDQIRQVKEALSIPVFANG 211
>gi|352684182|ref|YP_004896167.1| hypothetical protein Acin_0795 [Acidaminococcus intestini RyC-MR95]
gi|350278837|gb|AEQ22027.1| conserved hypothetical protein [Acidaminococcus intestini RyC-MR95]
Length = 325
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 21/207 (10%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
++LAPM + LPFR++ + GAD SE + L+ +K +L TID
Sbjct: 15 VVLAPMAGVTDLPFRVICRENGADYTVSEMVSAKALLYKNQKTFAML-TID--------- 64
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTGGMGAAL 150
P+E I G+ E L AA K+ A ID+NMGCP ++ G G+AL
Sbjct: 65 -----PKEHPTAIQLFGSVPSE--LAAAGKIVESRGADMIDVNMGCPVHKIVSNGEGSAL 117
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRTKA 208
+ PD IL L+ +SIPV+ K R +EA + + + E G+ A+ VHGRT+A
Sbjct: 118 MKDPDKVYAILAALVDAVSIPVTVKFRAGWDEAHKNAAVIAQMAEKAGVSAVCVHGRTRA 177
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + + ++IR + + + IPV+ NG
Sbjct: 178 QFYQGKADWDIIRAVKESVGIPVLGNG 204
>gi|116252011|ref|YP_767849.1| tRNA-dihydrouridine synthase (nitrogen regulation protein)
[Rhizobium leguminosarum bv. viciae 3841]
gi|115256659|emb|CAK07747.1| putative tRNA-dihydrouridine synthase (nitrogen regulation protein)
[Rhizobium leguminosarum bv. viciae 3841]
Length = 338
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 20/212 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++ N+++LAPM + +PFR LA +GA LV +E + +LV + L+ F
Sbjct: 22 VSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLSAAGF-- 79
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGG 145
++Q+ + EAAK +H IDINMGCP + + G
Sbjct: 80 ---------------RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGY 124
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVH 203
G+AL+ PD A ++ + + IPV+ K+R+ +E A + +R EA G+ + +H
Sbjct: 125 SGSALMRDPDHAIGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEAAGVQLVTIH 184
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+ + R + IR + + + IP+IANG
Sbjct: 185 GRTRMQFYEGRADWDAIRAVREVISIPLIANG 216
>gi|4097493|gb|AAD00100.1| PP35 [Homo sapiens]
Length = 307
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 24/221 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ K D T + D
Sbjct: 20 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKS-IKARDSEFTTNQGD------- 71
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 72 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 123
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 124 PELVQDMVKQVRNQVETPGFSVSIKIRINDDLKRTVDLCQKAEATGVSWITVHGRTAEER 183
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 184 HQPVHYDSIKIIK---ENMCIPVIANGDIRSLKEAENVWRI 221
>gi|340053464|emb|CCC47757.1| putative dihydrouridine synthase [Trypanosoma vivax Y486]
Length = 508
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 11/213 (5%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER-KVNDLLNTIDFVDPL---- 88
++ PMV + LPFR+L YGA L YS L ++ + T+ +P
Sbjct: 66 VVGPMVDQSELPFRILCRRYGATLAYSPMLHAKSFAQSASYRKRYFSTTLPLWNPSLNET 125
Query: 89 -DGSVVFRTCPRE-KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
D S +T ++ + + +Q DPE L AA+ VE A+D N+GCP+ + G
Sbjct: 126 SDSSGQGKTNRQDCDHPLFVQFCGNDPETVLTAARYVEDYCEAVDFNLGCPQGIARRGHY 185
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
G+ L+ ++ NIL L+ L +PV+ K+RVF +E T+ + L GI + VHGRT
Sbjct: 186 GSFLMEDWELIHNILHMLVVELRVPVTAKMRVFDDELLTLKYAEMLRDTGIYVLCVHGRT 245
Query: 207 KAERPRHRN--RIEMIRTLTQHL--KIPVIANG 235
+ + + +++IR + +HL IP+I NG
Sbjct: 246 RENKGQQTKPADLDIIRRVHEHLGGTIPIITNG 278
>gi|432822701|ref|ZP_20056390.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE118]
gi|431366490|gb|ELG52988.1| tRNA-dihydrouridine synthase B [Escherichia coli KTE118]
Length = 321
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRVVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|402487585|ref|ZP_10834403.1| tRNA-dihydrouridine synthase [Rhizobium sp. CCGE 510]
gi|401813454|gb|EJT05798.1| tRNA-dihydrouridine synthase [Rhizobium sp. CCGE 510]
Length = 331
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 105/213 (49%), Gaps = 20/213 (9%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
+++ N+++LAPM + +PFR LA +GA LV +E + +LV + L F
Sbjct: 14 DVSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLQAAGF- 72
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTG 144
++Q+ + EAAK +H IDINMGCP + + G
Sbjct: 73 ----------------RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGG 116
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGV 202
G+AL+ PD A ++ + + IPV+ K+R+ +E A + +R E GI + +
Sbjct: 117 YSGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAETAGIQLVTI 176
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
HGRT+ + R + IR + + + IP+IANG
Sbjct: 177 HGRTRMQFYEGRADWDAIRAVREVISIPLIANG 209
>gi|156120523|ref|NP_001095407.1| tRNA-dihydrouridine synthase 4-like [Bos taurus]
gi|151555764|gb|AAI49230.1| DUS4L protein [Bos taurus]
gi|296488502|tpg|DAA30615.1| TPA: dihydrouridine synthase 4-like [Bos taurus]
Length = 238
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 24/219 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 ICAPMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSA-KARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP++++L G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVRDMVKQVRNQVENPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247
P H E I+ + + + IP++ANG + + + V+
Sbjct: 194 HQPVH---YEAIKIIKESMSIPIVANGDIRSLKEAENVW 229
>gi|149190656|ref|ZP_01868924.1| tRNA-dihydrouridine synthase [Vibrio shilonii AK1]
gi|148835539|gb|EDL52508.1| tRNA-dihydrouridine synthase [Vibrio shilonii AK1]
Length = 309
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 27/225 (12%)
Query: 35 LAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLDGSVV 93
+APM + PFR L L YGA + SE + + KL KT + +++ +G
Sbjct: 1 MAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKLWKTAKSQQRMVH--------EGESG 52
Query: 94 FRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
R+ +QI ADP+ EAA+ VE+ IDINMGCP + G+ALL
Sbjct: 53 IRS---------VQIAGADPKLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLK 103
Query: 153 TPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTKAER 210
PDI +IL T++ + +PV+ K R + + + + K E CGI A+ +HGRT+
Sbjct: 104 YPDIIEDILRTVVDAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQALALHGRTRTCM 163
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+ + I+ + + IPVIANG +K ++DY G +L
Sbjct: 164 YKGEAEYDSIKAVKNAISIPVIANGDIDSPEKAKFVLDYTGADAL 208
>gi|381195877|ref|ZP_09903219.1| tRNA-dihydrouridine synthase B [Acinetobacter lwoffii WJ10621]
Length = 341
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + + ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRSLCKYFGAGHAVSEMMTSDQTLRMSKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DP+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 GELA---------PISAQIAGSDPKELAEAARYQVSNGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL +++ + +PV+ K R+ + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLKDEDLVARILDEVVAAVDVPVTLKTRLGFLNGHENILRVAKRAEEAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R ++I+ + Q ++IPV+ANG +K ++DY G
Sbjct: 173 REDMYLNTARYDLIKEVKQLIRIPVVANGDIDSPEKAKYVLDYTGA 218
>gi|20806861|ref|NP_622032.1| hypothetical protein TTE0344 [Thermoanaerobacter tengcongensis MB4]
gi|20515331|gb|AAM23636.1| predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family
[Thermoanaerobacter tengcongensis MB4]
Length = 322
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 106/214 (49%), Gaps = 20/214 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N + L+PM + PFRL+ + GA L Y+E + L NT
Sbjct: 4 GDVVLENNVFLSPMAGVTDKPFRLICQEMGAGLTYTEMVSAKGLYYGSE------NTKAL 57
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLT 143
+D DG K+ +QI +DPE E A+++ E IDINMGCP +
Sbjct: 58 LDIDDGE-----------KVAIQIFGSDPEIMGEIARRLNESKALIIDINMGCPTPKIVK 106
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIG 201
G GAAL+ PD+A ++ ++ PV+ KIR N+ + + + + E GI A+
Sbjct: 107 NGDGAALMLKPDLAEKVMEAVVKASYKPVTVKIRKGWNDNNVNAVEIAQIAERVGIKAVA 166
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + E+I+ + + +KIPVI NG
Sbjct: 167 VHGRTREQFYSGKADWEIIKKVKESVKIPVIGNG 200
>gi|343518419|ref|ZP_08755411.1| tRNA-dihydrouridine synthase B [Haemophilus pittmaniae HK 85]
gi|343393707|gb|EGV06260.1| tRNA-dihydrouridine synthase B [Haemophilus pittmaniae HK 85]
Length = 326
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 23/215 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+I+LAPM + PFR L YGA L +SE + + ++ TE+ L ++
Sbjct: 10 NRILLAPMAGITDQPFRRLCAHYGAGLTFSEMMSANPQVWHTEKSKLRLSHS-------- 61
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
R+ +QI ADP E A AA VE+ IDINMGCP + G+
Sbjct: 62 ---------RDAGLNAVQIAGADPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRT 206
ALL P++ IL ++S + +PV+ KIR +++ + + + K E GI A+ +HGRT
Sbjct: 113 ALLQFPELVEQILKAVVSAVDVPVTLKIRTGWDKSHRNCVDIAKIAEQSGIAALTIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG--GSKE 239
+A + IR + Q + IP+IANG GS E
Sbjct: 173 RACLFEGAAEYQSIRAVKQAVGIPIIANGDIGSAE 207
>gi|383309762|ref|YP_005362572.1| tRNA-dihydrouridine synthase B [Pasteurella multocida subsp.
multocida str. HN06]
gi|380871034|gb|AFF23401.1| tRNA-dihydrouridine synthase B [Pasteurella multocida subsp.
multocida str. HN06]
Length = 334
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 25/222 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I LAPM + PFR + YGA L +SE +++T V +
Sbjct: 12 NRIFLAPMAGITDQPFRRICTHYGAGLTFSE----------------MMSTNPQVWHTEK 55
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +E +QI DP+ +AA+ VE+ IDINMGCP + G+A
Sbjct: 56 SKLRLAHHQEAGINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSA 115
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL ++ ++++PV+ KIR ++ + + + K E CGI A+ +HGRT+
Sbjct: 116 LLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTR 175
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDY 243
+ + I+ L + L IP+IANG +K ++DY
Sbjct: 176 SCMFEGEAEYDNIKALKEQLSIPIIANGDITSAEKAKYVLDY 217
>gi|301755675|ref|XP_002913683.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Ailuropoda
melanoleuca]
gi|281349138|gb|EFB24722.1| hypothetical protein PANDA_001508 [Ailuropoda melanoleuca]
Length = 317
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 24/221 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVRDMVKQVRNQVENPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
P H E I+ + ++L IPVIANG + + + V+ +
Sbjct: 194 HQPVH---YEAIKIIKENLSIPVIANGDIRNLKEAENVWHI 231
>gi|433613230|ref|YP_007190028.1| putative TIM-barrel protein, nifR3 family [Sinorhizobium meliloti
GR4]
gi|429551420|gb|AGA06429.1| putative TIM-barrel protein, nifR3 family [Sinorhizobium meliloti
GR4]
Length = 342
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 20/221 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++ LAPM + LPFR+LA +GA V +E + +LV + L
Sbjct: 20 GNVEIRNRVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLKN-SG 78
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
+DP I+Q+ + EAA+ VE + A I DINMGCP +
Sbjct: 79 IDPH----------------IVQLAGREAHWMAEAARIVEANGADIIDINMGCPAKKVTG 122
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A +++ + ++PV+ K+R+ +E A + +R E G+ AI
Sbjct: 123 GYSGSALMRDPDHALSLIEATVKAATVPVTLKMRLGWDENSINAPLIARRAEEAGVKAIT 182
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+HGRT+ + + + IR + + + +P+IANG + D
Sbjct: 183 IHGRTRMQFYNGKADWDAIRAVREVVSVPLIANGDVDSVAD 223
>gi|448531879|ref|XP_003870351.1| Dus4 protein [Candida orthopsilosis Co 90-125]
gi|380354705|emb|CCG24221.1| Dus4 protein [Candida orthopsilosis]
Length = 344
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 25/222 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I PMVR + LPFR L Y D+VY+ ++ + V+ ND+ DF
Sbjct: 30 IAGPMVRYSKLPFRELCRFYKVDIVYTPMILAREFVR-----NDIARYSDF--------- 75
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
T + +I+Q+G ++ E ++ + + V I IN GCP + + G+GAAL+S
Sbjct: 76 --TTNDKDQPVIVQVGVSNVEDFMKFIEMIHPYVDGIGINCGCPIRDQIREGIGAALMSK 133
Query: 154 PDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
P + +++TT + SI + KIR+ ++ +TI K +E G I +HGRTK R
Sbjct: 134 PRLVADLITTAKAKYGDSICIDTKIRIHNDINETIEFVKLIEEAGTDIITIHGRTKTTRS 193
Query: 212 RHRNRIEMIRTLTQHLK-IPVIANG------GSKEIVDYGGV 246
++ I+TL Q++K +PVIANG I +Y GV
Sbjct: 194 SVPVNLDAIKTLRQNIKSVPVIANGDCFTLDDCNRIAEYTGV 235
>gi|389739275|gb|EIM80469.1| Dus-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 515
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K I APMV + L +R L+ YG + Y+ +++ K+ + N + +
Sbjct: 26 SPKYIGAPMVDQSELAWRKLSRRYGVQVAYTP-MINAKMFS-------MNNRKPYRELAF 77
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+V+ +I+Q DPE+ L +AK +E AIDIN+GCP+ + G G+
Sbjct: 78 NTVLGEEGGPGDRPLIVQFCANDPEQLLTSAKVLESHCDAIDINLGCPQDIAKKGRYGSF 137
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ ++ TL NLSIPV+ K RVF + T+ K LE G + HGRT+ +
Sbjct: 138 LQDEWDLIFKMINTLHENLSIPVTAKFRVFPSLEKTVEYAKMLERAGAQILTCHGRTREQ 197
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
R H + IR + + +K+PV ANG
Sbjct: 198 RGHHSGLADWAKIRAVKEAVKVPVFANG 225
>gi|358257030|dbj|GAA58082.1| tRNA-dihydrouridine synthase B, partial [Clonorchis sinensis]
Length = 314
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|218134816|ref|ZP_03463620.1| hypothetical protein BACPEC_02719 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990201|gb|EEC56212.1| TIM-barrel protein, nifR3 family [[Bacteroides] pectinophilus ATCC
43243]
Length = 319
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +ILAPM + LPFRLL + G ++YSE + ++ R ++LL
Sbjct: 4 GNVEIKNNVILAPMAGVTDLPFRLLCKEQGCGMLYSEMVSAKAIMYNNRNTDELLK---- 59
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT 143
V P E+N + +Q+ +DP+ + AK++E ID+NMGCP +
Sbjct: 60 VRP------------EENPVAVQLFGSDPQIMADMAKRIEELPFDTIDVNMGCPVPKVVN 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ P + I++ + + PV+ KIR N+ + + +E G +
Sbjct: 108 NGEGSALMKNPLLVGQIVSAMAKAVKKPVTVKIRKGFNDDMINAPEIAHIIEESGGACVA 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + ++IR + Q + IPVI NG
Sbjct: 168 VHGRTREQYYTGKADWDIIRQVKQRVHIPVIGNG 201
>gi|148228148|ref|NP_001089272.1| dihydrouridine synthase 4-like [Xenopus laevis]
gi|58702004|gb|AAH90192.1| MGC85035 protein [Xenopus laevis]
Length = 308
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 24/212 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y DL Y+ ++ VK+ K D T + D
Sbjct: 20 ISAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSV-KARDSEFTTNQGD------- 71
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q + + +AA V + ID+N GCP+++++ G GA L++
Sbjct: 72 ---CP-----LIVQFAAKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLINN 123
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + +S KIR+ + + T+ LC++ EA G+ I VHGRT ER
Sbjct: 124 PELVSDMVRQVRNQVGSSEFTISIKIRIHADISRTVDLCRKAEAAGVSWITVHGRTHDER 183
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
P H N I+ I+ + L IP++ANG K +
Sbjct: 184 HQPVHYNAIKNIK---ESLSIPIVANGDIKSL 212
>gi|390992088|ref|ZP_10262334.1| TIM-barrel , NifR3 family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372553193|emb|CCF69309.1| TIM-barrel , NifR3 family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 332
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 101/209 (48%), Gaps = 23/209 (11%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 11 KVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG----- 62
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
E + I +QI +P++ EAA+ V+H IDINMGCP + G+AL
Sbjct: 63 --------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSAL 114
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGRT 206
+ D+ ILT ++ +++PV+ KIR H TIA + + CGI A+ VHGRT
Sbjct: 115 MRDEDLVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + I + L+IPV+ANG
Sbjct: 173 RDQHYTGSAEYATIAQIKAALQIPVVANG 201
>gi|78046424|ref|YP_362599.1| nifR3 family TIM-barrel protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78034854|emb|CAJ22499.1| putative TIM-barrel protein; NifR3 family [Xanthomonas campestris
pv. vesicatoria str. 85-10]
Length = 332
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 101/209 (48%), Gaps = 23/209 (11%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 11 KVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG----- 62
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
E + I +QI +P++ EAA+ V+H IDINMGCP + G+AL
Sbjct: 63 --------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSAL 114
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGRT 206
+ D+ ILT ++ +++PV+ KIR H TIA + + CGI A+ VHGRT
Sbjct: 115 MRDEDLVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + I + L+IPV+ANG
Sbjct: 173 RDQHYTGSAEYATIAQIKAALQIPVVANG 201
>gi|393246893|gb|EJD54401.1| Dus-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 485
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 10/208 (4%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + LP+R+LA YGA+L Y+ +++ K+ T+ N ++F
Sbjct: 23 SPKFVVAPMVDQSELPWRILARRYGAELAYTP-MINAKMFATQ--TNKAYRELNF----- 74
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+ E +I+Q DP++ LE+AK + A+D+N+GCP+ + G GA
Sbjct: 75 NTEHGEEGGPEDRPLIVQFCANDPDQLLESAKALAPYCDAVDLNLGCPQDIAKRGRYGAF 134
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ ++ L NL IPV+ K RVF T+ K LE G + HGR + +
Sbjct: 135 LQDDWDLIYKLINALHMNLDIPVTAKFRVFPTVEKTVEYAKMLERAGAQILACHGRRREQ 194
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
R + + I+ + + + +PV ANG
Sbjct: 195 RGVNAGLADWDKIKAVKEAVSVPVFANG 222
>gi|424894921|ref|ZP_18318495.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2297]
gi|393179148|gb|EJC79187.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2297]
Length = 339
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 20/214 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+++ N+++LAPM + +PFR LA +GA LV +E + +LV + L F
Sbjct: 21 GDVSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLKAAGF 80
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
++Q+ + EAAK +H IDINMGCP + +
Sbjct: 81 -----------------RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 123
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A ++ + + IPV+ K+R+ +E A + +R E GI +
Sbjct: 124 GYSGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPEIARRAEEAGIQLVT 183
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+ + R + IR + + + IP+IANG
Sbjct: 184 IHGRTRMQFYEGRADWDAIRPVREAISIPLIANG 217
>gi|294664625|ref|ZP_06729963.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292605605|gb|EFF48918.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 332
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 101/209 (48%), Gaps = 23/209 (11%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 11 KVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG----- 62
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
E + I +QI +P++ EAA+ V+H IDINMGCP + G+AL
Sbjct: 63 --------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSAL 114
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGRT 206
+ D+ ILT ++ +++PV+ KIR H TIA + + CGI A+ VHGRT
Sbjct: 115 MRDEDLVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + I + L+IPV+ANG
Sbjct: 173 RDQHYTGNAEYATIAQIKAALQIPVVANG 201
>gi|346723744|ref|YP_004850413.1| nifR3 family TIM-barrel protein [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346648491|gb|AEO41115.1| nifR3 family TIM-barrel protein [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 332
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 102/211 (48%), Gaps = 23/211 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG--- 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
E + I +QI +P++ EAA+ V+H IDINMGCP + G+
Sbjct: 63 ----------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHG 204
AL+ D+ ILT ++ +++PV+ KIR H TIA + + CGI A+ VHG
Sbjct: 113 ALMRDEDLVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+ + I + L+IPV+ANG
Sbjct: 171 RTRDQHYTGSAEYATIAQIKAALQIPVVANG 201
>gi|325926552|ref|ZP_08187868.1| tRNA-U20-dihydrouridine synthase [Xanthomonas perforans 91-118]
gi|325543060|gb|EGD14507.1| tRNA-U20-dihydrouridine synthase [Xanthomonas perforans 91-118]
Length = 332
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 101/209 (48%), Gaps = 23/209 (11%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 11 KVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG----- 62
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
E + I +QI +P++ EAA+ V+H IDINMGCP + G+AL
Sbjct: 63 --------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSAL 114
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGRT 206
+ D+ ILT ++ +++PV+ KIR H TIA + + CGI A+ VHGRT
Sbjct: 115 MRDEDLVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + I + L+IPV+ANG
Sbjct: 173 RDQHYTGSAEYATIAQIKAALQIPVVANG 201
>gi|443732865|gb|ELU17429.1| hypothetical protein CAPTEDRAFT_178407 [Capitella teleta]
Length = 463
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 107/214 (50%), Gaps = 18/214 (8%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
+++++APMV + L +R+L+ +GADL Y+ V+ + L T + PL
Sbjct: 28 SRLVVAPMVDQSELAWRILSRRHGADLCYTPMFHAPVFVRDASYRREALATCEEDRPL-- 85
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
I+Q DPE L+AAK E AID+N+GCP+ + G GA L
Sbjct: 86 --------------IVQFCANDPEILLKAAKYAEPHCDAIDLNLGCPQMIAKRGHYGAYL 131
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
D+ +++ L +P++CKIRVF + T+ + LE G + VHGRT+ ++
Sbjct: 132 QEEWDLLERMVSLCAKELKVPITCKIRVFDDVDKTVQYAQMLEKAGCKLLTVHGRTREQK 191
Query: 211 -PRHR-NRIEMIRTLTQHLKIPVIANGGSKEIVD 242
PR I+ + ++KIP+ ANG + + D
Sbjct: 192 GPRTGIASWSHIKAVRDNIKIPMFANGNIQYLPD 225
>gi|167629403|ref|YP_001679902.1| dihydrouridine synthase tim-barrel nifr3 family protein
[Heliobacterium modesticaldum Ice1]
gi|167592143|gb|ABZ83891.1| dihydrouridine synthase tim-barrel nifr3 family protein
[Heliobacterium modesticaldum Ice1]
Length = 331
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 19/213 (8%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
++ APM + PFR + ++ LVY+E + D L R NT++ +D + G
Sbjct: 20 VVAAPMAGVTDKPFRTVLKEHRCPLVYTEMISDKALTYANR------NTMEILD-ITG-- 70
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLTGGMGAALL 151
E I +QI ++P EAA+ VE A+I DINMGCP + G GA LL
Sbjct: 71 -------EARPIAVQIFGSEPAVMAEAARIVEAAGASIIDINMGCPAPKIVRNGEGACLL 123
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVHGRTKAE 209
TPD+A +I ++ + +PV+ K+R+ + +A L RLEA G+ A+ VHGRT+
Sbjct: 124 KTPDLAVDIAEAVVRAVQVPVTVKMRIGWSSGRIVAPELAPRLEAVGVQALTVHGRTREM 183
Query: 210 RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ +I + + IPVI NG E D
Sbjct: 184 FYSGQADWSVIAETVRQVSIPVIGNGDVWEPDD 216
>gi|262368472|ref|ZP_06061801.1| tRNA-dihydrouridine synthase B [Acinetobacter johnsonii SH046]
gi|262316150|gb|EEY97188.1| tRNA-dihydrouridine synthase B [Acinetobacter johnsonii SH046]
Length = 341
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
SN +I+APM + PFR L +GA SE + + ++ +K L +F D
Sbjct: 9 SNNLIVAPMAGVTDRPFRSLCKYFGAGHAVSEMMTSDQTLRMSKKS---LYRANF----D 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DP+ EAA+ +V + +DINMGCP + G+
Sbjct: 62 GELA---------PISAQIAGSDPKELAEAARYQVSNGAQIVDINMGCPAKKVCNKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL D+ IL +++ + +PV+ K R+ + + + + KR E GI A+ +HGRT
Sbjct: 113 ALLKDEDLVARILDEVVAAVDVPVTLKTRLGFLNGHENILRVAKRAEDAGIAALALHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ + + R ++I+ + Q ++IPV+ANG +K ++DY G
Sbjct: 173 REDMYLNTARYDLIKDVKQLIRIPVVANGDIDSPEKAKYVLDYTGA 218
>gi|160939910|ref|ZP_02087257.1| hypothetical protein CLOBOL_04801 [Clostridium bolteae ATCC
BAA-613]
gi|158437344|gb|EDP15109.1| hypothetical protein CLOBOL_04801 [Clostridium bolteae ATCC
BAA-613]
Length = 321
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N N +ILAPM + LPFR+L + GA V +E + ++ + +LL
Sbjct: 6 GNTVLENNVILAPMAGVTDLPFRVLCREQGAGCVVTEMVSAKAVLYNNKNTRELLQ---- 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHD-VAAIDINMGCPKQFSLT 143
+DP + +Q+ ++P+ E A ++E ID+NMGCP +
Sbjct: 62 IDPAE------------RPAAVQLFGSEPDIMAEIAARLEEGPYDYIDVNMGCPVPKIVN 109
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIG 201
G G+AL+ P+ A +LT ++ + PV+ K R N+ + + K E+CG+ A+
Sbjct: 110 NGEGSALMKNPERAKEVLTAMVKAVKKPVTVKFRKGFNDLSVNAVEFAKMAESCGVAAVA 169
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + ++IR + + ++IPVI NG
Sbjct: 170 VHGRTREQYYSGKADWDIIRQVKEAVRIPVIGNG 203
>gi|319936962|ref|ZP_08011372.1| transcriptional regulator [Coprobacillus sp. 29_1]
gi|319807898|gb|EFW04477.1| transcriptional regulator [Coprobacillus sp. 29_1]
Length = 335
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 20/222 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI+ N+I++APM + + FR + ++GA LV SE + D L +K ++L +
Sbjct: 4 GNIDIENRIVMAPMAGITNVAFRKIIKEFGAGLVVSEMVSDKALCYGNQKTIEMLKVDEN 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
P+ +Q+ D E + AAK V+ + IDINMGCP L
Sbjct: 64 EHPMS----------------IQVFGGDVESMVTAAKFVDENSNCDIIDINMGCPVNKVL 107
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAI 200
G+ LL PD+ +I+ +++ +S PV+ KIR+ + + + + + + +E G AI
Sbjct: 108 KAHAGSYLLQFPDLVYDIVKSVVEAVSKPVTVKIRIGYDFDSINCVEIAQLIERAGASAI 167
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
VHGRT+++ I+ + + + IPVI NG K D
Sbjct: 168 AVHGRTRSQMYEGHADWSWIKKVKEAVSIPVIGNGDVKTAKD 209
>gi|260801020|ref|XP_002595394.1| hypothetical protein BRAFLDRAFT_119015 [Branchiostoma floridae]
gi|229280640|gb|EEN51406.1| hypothetical protein BRAFLDRAFT_119015 [Branchiostoma floridae]
Length = 212
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 18/206 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
+ ++APMV + LP+RLL+ +G L Y+ + E D +
Sbjct: 21 RYVVAPMVDQSELPWRLLSRRHGCQLAYTPMFHAALFSREETYFRDAM------------ 68
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
+TCP E +I+Q DP+ ++AA + AID+N+GCP+ + G GA L
Sbjct: 69 ---QTCP-EDRPLIVQFCANDPDILVQAALLAQDHCDAIDLNLGCPQSIARRGHYGAFLQ 124
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
D+ +++ + S+PV+CKIRVF + T+ + LE G + VHGRTK ++
Sbjct: 125 DDWDLIRRLVSAVHERCSVPVTCKIRVFQDVKRTVEYAQMLEKAGCQLLTVHGRTKEQKG 184
Query: 212 RHRN--RIEMIRTLTQHLKIPVIANG 235
+ I+ + +KIPV ANG
Sbjct: 185 SLTGLASWDHIKAVKDSVKIPVFANG 210
>gi|408375289|ref|ZP_11172962.1| NifR3 family TIM-barrel protein [Alcanivorax hongdengensis A-11-3]
gi|407764884|gb|EKF73348.1| NifR3 family TIM-barrel protein [Alcanivorax hongdengensis A-11-3]
Length = 346
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N +ILAPM + PFR L + GA LV SE + + RK L+
Sbjct: 10 NPLILAPMAGVTDRPFRRLCRELGAGLVVSEMVTSDTRLWNSRKSRQRLDHHG------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E I +QI +P EAA+ VEH IDINMGCP + G+A
Sbjct: 63 ---------EPGPISVQIAGGEPAMMAEAARANVEHGAQIIDINMGCPAKKVCKRAAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGVHGRTK 207
LL+ PD+ I+ ++ + +PV+ KIR + + + + + +A GI A+ +HGRT+
Sbjct: 114 LLADPDLVARIVEAVVGAVDVPVTLKIRTGPDRDHRNAVQIARIAQAAGIQALAIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
A++ I + + IPV+ANG
Sbjct: 174 ADKFNGEAEYATIAEVVSAVDIPVMANG 201
>gi|358010845|ref|ZP_09142655.1| tRNA-dihydrouridine synthase B [Acinetobacter sp. P8-3-8]
Length = 348
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 25/223 (11%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
I +APM + PFR L +GA SE + + ++ +K L +F DG +
Sbjct: 19 IFVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTSDQTLRMTKKS---LYRANF----DGEL 71
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
I QI ++PE+ EAA+ +V + +DINMGCP + G+ALL
Sbjct: 72 A---------PISAQIAGSEPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALL 122
Query: 152 STPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
D+ IL T+++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT+ +
Sbjct: 123 KDEDLVARILDTVVAAVDVPVTLKTRLGFLNGDENILRVAKRAEEAGIAALALHGRTRED 182
Query: 210 RPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ R +I+ + Q L IPVIANG +K ++DY G
Sbjct: 183 MYLNTARYRLIKEVKQMLSIPVIANGDIDSPEKAKYVLDYTGA 225
>gi|148828154|ref|YP_001292907.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
PittGG]
gi|148719396|gb|ABR00524.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
PittGG]
Length = 326
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL P + IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPYLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTGA 218
>gi|410910122|ref|XP_003968539.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Takifugu rubripes]
Length = 305
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 24/221 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y D+ ++ +V +++ + + T
Sbjct: 12 ICAPMVRYSKLAFRSLVRKYHCDVCFTPMIVASDFIRSTKARDSEFTT------------ 59
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
++ +I+Q D + +AA V +D+N GCP++++++ G GA L++
Sbjct: 60 ----NQQDRPLIVQFAANDAQTLADAACIVAPFSDGVDLNCGCPQRWAMSAGYGACLINK 115
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++T + ++N + VS KIR+ + T+ LC++ E+ G+ I VHGRT ER
Sbjct: 116 PELVKDMVTHVRNQVNNPNYTVSIKIRIHKDLRRTVDLCQKAESAGVSWITVHGRTSEER 175
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
P H + I++I+ + +PVIANG K + D + L
Sbjct: 176 HQPVHYDAIKIIK---DSVSVPVIANGDVKYLRDVQSTYQL 213
>gi|423080865|ref|ZP_17069480.1| TIM-barrel protein, nifR3 family [Clostridium difficile
002-P50-2011]
gi|423087597|ref|ZP_17075984.1| TIM-barrel protein, nifR3 family [Clostridium difficile
050-P50-2011]
gi|357544630|gb|EHJ26632.1| TIM-barrel protein, nifR3 family [Clostridium difficile
050-P50-2011]
gi|357551945|gb|EHJ33724.1| TIM-barrel protein, nifR3 family [Clostridium difficile
002-P50-2011]
Length = 322
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 23/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ NK+ L+PM + LPFRL+ + G L+Y+E + L + +L
Sbjct: 4 GNLKLKNKVFLSPMAGVTDLPFRLICKEQGCGLLYTEMINGKALCYDDENTKKMLKI--- 60
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPE---RALEAAKKVEHDVAAIDINMGCPKQFS 141
E++ + +QI ++PE RA E +++ +DINMGCP
Sbjct: 61 -------------EEEEHPVAVQIFGSEPEFMGRAAEIMNDYSNEI--LDINMGCPAPKV 105
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR--VFHNEADTIALCKRLEACGIIA 199
+ G G+AL+ P +A +L ++ N PV+ KIR N + + + K E CGI A
Sbjct: 106 VKNGDGSALMKNPKLAEEVLRAVVKNSKKPVTLKIRKGWDDNSVNAVEIAKIAEDCGISA 165
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ +HGRT+ + + ++I + ++L IPVI NG
Sbjct: 166 LAIHGRTREQFYSGKADWDIIAEIKKNLSIPVIGNG 201
>gi|238019651|ref|ZP_04600077.1| hypothetical protein VEIDISOL_01525 [Veillonella dispar ATCC 17748]
gi|237863692|gb|EEP64982.1| hypothetical protein VEIDISOL_01525 [Veillonella dispar ATCC 17748]
Length = 328
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 21/213 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ + ILAPM ++ + +RLLA ++GA LV +E + + + ++LL +
Sbjct: 11 VKIDGQAILAPMAGVSDIAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRIEEVER 70
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTG 144
P+ +QI ++PE A+ KV D A +DINMGCP + +T
Sbjct: 71 PVS----------------MQIFGSNPE-AIALGAKVVADAGADIVDINMGCPVKKVVTS 113
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGV 202
G G+AL+ PD+A + + + +PV+ K+R+ + + + KR+E+ G+ AI V
Sbjct: 114 GDGSALMKNPDLAARVAEAAVKAVDVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAV 173
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
HGRTK + I+ + + + +PVI NG
Sbjct: 174 HGRTKEQMYSGHADWSYIKAVKEAVSVPVIGNG 206
>gi|424914099|ref|ZP_18337463.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM597]
gi|392850275|gb|EJB02796.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM597]
Length = 338
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 20/212 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++ N+I+LAPM + +PFR LA +GA LV +E + +LV + L F
Sbjct: 22 VSVRNRIVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLRAAGF-- 79
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGG 145
++Q+ + EAAK +H IDINMGCP + + G
Sbjct: 80 ---------------RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGY 124
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVH 203
G+AL+ PD A ++ + + IPV+ K+R+ +E A + +R EA GI + +H
Sbjct: 125 SGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPEIARRAEAAGIQLVTIH 184
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+ + R + IR + + IP+IANG
Sbjct: 185 GRTRMQFYEGRADWDAIRPVRDVISIPLIANG 216
>gi|145634155|ref|ZP_01789866.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
PittAA]
gi|229843962|ref|ZP_04464103.1| DNA-binding protein Fis [Haemophilus influenzae 6P18H1]
gi|145268599|gb|EDK08592.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae
PittAA]
gi|229812956|gb|EEP48644.1| DNA-binding protein Fis [Haemophilus influenzae 6P18H1]
Length = 353
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 37 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 94
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 95 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 139
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL P + IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 140 ALLQFPYLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + I+ + Q + IPVIANG +K ++DY G
Sbjct: 200 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLDYTG 244
>gi|315633700|ref|ZP_07888990.1| tRNA-dihydrouridine synthase B [Aggregatibacter segnis ATCC 33393]
gi|315477742|gb|EFU68484.1| tRNA-dihydrouridine synthase B [Aggregatibacter segnis ATCC 33393]
Length = 342
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I+LAPM + PFR + YGA L +SE + + V K
Sbjct: 32 NRILLAPMAGITDQPFRKICAHYGAGLTFSEMMSTNPQVWHTEKSK-------------- 77
Query: 91 SVVFRTCPREKNKI-ILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
R + I +QI +DP+ +AA+ VE+ IDINMGCP + G+
Sbjct: 78 ---LRLAHHQDAGINAVQIAGSDPDEMAQAAQVNVEYGAQIIDINMGCPAKKVNRKMAGS 134
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++ ++++PV+ KIR + + + + K E GI A+ VHGRT
Sbjct: 135 ALLQYPDLVQQILEAVVKSVNVPVTLKIRTGWDTENRNCVEIAKIAEQSGIQALTVHGRT 194
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + + I+ + Q + IPVIANG +K ++DY G
Sbjct: 195 RACKFEGVAEYDSIKAVKQAVSIPVIANGDMISPQQAKFVLDYTG 239
>gi|354498109|ref|XP_003511158.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Cricetulus griseus]
Length = 317
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 ICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARILSDAAQIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + TI LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVQDMVKQVRNQVENPRFSVSIKIRIHDDLTRTIDLCQKAEATGVSWITVHGRTIEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H E I+ + + + IPV+ANG + + + V+ ++
Sbjct: 194 HQPVH---YEAIKIIKESVSIPVVANGDIRNLKEAENVWQMS 232
>gi|358335819|dbj|GAA54426.1| tRNA-dihydrouridine synthase 1 [Clonorchis sinensis]
Length = 1529
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 24/211 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K +LAPMV + L +RLLA YGA L Y+ +++ + F L
Sbjct: 833 SPKYVLAPMVDASELAWRLLARRYGAQLTYTP----------------MIHAMMF---LK 873
Query: 90 GSVVFRTCPR---EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
V ++C + E +I+Q PE ++AA+ ++ A+DIN+GCP++ + G
Sbjct: 874 DKVYRQSCLQFSPEDRPLIVQFCANSPETFVKAARTIQPYCDAVDINLGCPQKIAKHGHY 933
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GA L ++ +I+ +S L IPV+CKIR+F + T++ K LEA G + VHGRT
Sbjct: 934 GAFLQDEWNLIRSIVNRAVSELDIPVTCKIRIFPDVERTVSYAKMLEAAGASLLVVHGRT 993
Query: 207 KAERPRHRNRIEM--IRTLTQHLKIPVIANG 235
+ + + + I+ + L IPVI+NG
Sbjct: 994 REMKGQLTGLADWNQIKRVKAELTIPVISNG 1024
>gi|303228846|ref|ZP_07315659.1| TIM-barrel protein, nifR3 family [Veillonella atypica
ACS-134-V-Col7a]
gi|302516466|gb|EFL58395.1| TIM-barrel protein, nifR3 family [Veillonella atypica
ACS-134-V-Col7a]
Length = 330
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ ILAPM ++ + +RLLA ++GA +V +E + + + ++LL +
Sbjct: 8 GNVPIQGMAILAPMAGVSDIAYRLLAKEHGASMVCTEMVSAMGIKYKNERTHELLRMEEV 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPER-ALEAAKKVEHDVAAIDINMGCPKQFSLT 143
P+ +QI ++PE AL A +DINMGCP + ++
Sbjct: 68 EHPVS----------------MQIFGSNPEAIALGAKVVAAAGADIVDINMGCPVKKVVS 111
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ TPD+A + + + +PV+ K+R+ ++ + + KR+E+ G+ A+
Sbjct: 112 SGDGSALMKTPDLAARVAEAAVKAVDVPVTVKMRIGWDDEHINVVDFAKRIESTGVAAVA 171
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + R I+ + L IPVI NG
Sbjct: 172 VHGRTREQMYMGRADWSYIKAVKDSLSIPVIGNG 205
>gi|426227585|ref|XP_004007898.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Ovis aries]
Length = 238
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 24/221 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 VCAPMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSA-KARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP++++L G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVRDMVKQVRNQVENPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
P H E I+ + + + IP++ANG + + + V+ +
Sbjct: 194 HQPVH---YEAIKIIKESMSIPIVANGDIRSLKEAENVWHI 231
>gi|227821859|ref|YP_002825829.1| tRNA-dihydrouridine synthase [Sinorhizobium fredii NGR234]
gi|227340858|gb|ACP25076.1| tRNA-dihydrouridine synthase [Sinorhizobium fredii NGR234]
Length = 342
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 108/221 (48%), Gaps = 20/221 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++ LAPM + LPFR+LA +GA V +E + +LV + L
Sbjct: 20 GNVEIRNRVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLKN-SG 78
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
+DP I+Q+ + EAAK VE + A I DINMGCP +
Sbjct: 79 IDPH----------------IVQLAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTG 122
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A +++ + + +PV+ K+R+ +E A + +R E G+ AI
Sbjct: 123 GYSGSALMRDPDHALSLIEATVKAVRVPVTLKMRLGWDENSINAPLIARRAEEAGVQAIT 182
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+HGRT+ + + IR + + IP+IANG I D
Sbjct: 183 IHGRTRMQFYNGNADWDAIRAVRDVISIPLIANGDVDTIAD 223
>gi|401827139|ref|XP_003887662.1| tRNA-dihydrouridine synthase [Encephalitozoon hellem ATCC 50504]
gi|392998668|gb|AFM98681.1| tRNA-dihydrouridine synthase [Encephalitozoon hellem ATCC 50504]
Length = 340
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 101/203 (49%), Gaps = 16/203 (7%)
Query: 35 LAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94
+APMV + +R L+ YGA++ Y+E + ++ R N + N P
Sbjct: 15 VAPMVGNSEEAWRRLSKRYGANIFYTEMVHCESFLRGSR--NPVRNQWYTTSP------- 65
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154
E +++QI PE LEAA ++ AIDIN GCP++ + G GA L
Sbjct: 66 -----EDRPLVIQICGNSPEVMLEAALIMQDHCDAIDINFGCPQRVARKGNYGAYLQENW 120
Query: 155 DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR 214
+ I+ L +NLS+PV CKIRVF + T+ K +E G + VHGRT+ ++
Sbjct: 121 GLTEKIVKVLSTNLSVPVFCKIRVFKSIEKTVEYAKMIERAGCSFLAVHGRTRDQKGESM 180
Query: 215 N--RIEMIRTLTQHLKIPVIANG 235
+ IR + + L IPV++NG
Sbjct: 181 GLASWDHIRAVKEALTIPVLSNG 203
>gi|344230040|gb|EGV61925.1| Dus-domain-containing protein [Candida tenuis ATCC 10573]
Length = 414
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 14/179 (7%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKV-NDLLNTIDFVDPL 88
S K I+APMV + L +R+L+ YGA+L Y+ + +L TE K ++ + D + +
Sbjct: 12 SPKTIVAPMVDQSELAWRILSRRYGAELCYTP-MFHARLFATEEKYRKNMWSEFDGNEDI 70
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
D V+ + C DPE L+AAK VE+ A+D+N+GCP+ + G GA
Sbjct: 71 DRPVIVQFC------------ANDPEYLLQAAKLVENKCDAVDLNLGCPQGIARKGNYGA 118
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
L+ ++ ++T L NLS+PV+ KIRV+ + ++A + + G + +HGRT+
Sbjct: 119 FLMDDWELVRKLITNLHENLSVPVTAKIRVYDDWEKSLAYARMVLDAGAQFLTIHGRTR 177
>gi|344257920|gb|EGW14024.1| tRNA-dihydrouridine synthase 4-like [Cricetulus griseus]
Length = 299
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 12 ICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRS-IKARDSEFTTNQGD------- 63
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 64 ---CP-----LIVQFAANDARILSDAAQIVCPYANGIDINCGCPQRWAMAEGYGACLINK 115
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + TI LC++ EA G+ I VHGRT ER
Sbjct: 116 PELVQDMVKQVRNQVENPRFSVSIKIRIHDDLTRTIDLCQKAEATGVSWITVHGRTIEER 175
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H E I+ + + + IPV+ANG + + + V+ ++
Sbjct: 176 HQPVH---YEAIKIIKESVSIPVVANGDIRNLKEAENVWQMS 214
>gi|86357567|ref|YP_469459.1| tRNA-dihydrouridine synthase [Rhizobium etli CFN 42]
gi|1171717|sp|P41504.1|DUS_RHILP RecName: Full=Probable tRNA-dihydrouridine synthase
gi|581522|emb|CAA50567.1| unnamed protein product [Rhizobium phaseoli]
gi|86281669|gb|ABC90732.1| probable tRNA-dihydrouridine synthase protein [Rhizobium etli CFN
42]
Length = 317
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++ N+++LAPM + +PFR LA +GA LV +E +V + VND + +
Sbjct: 1 MSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTE------MVASRELVNDTAESWSRLK 54
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGG 145
+ FR ++Q+ + EAAK +H IDINMGCP + + G
Sbjct: 55 ----AAGFRPH-------MVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGY 103
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVH 203
G+AL+ PD A ++ + + IPV+ K+R+ +E A + +R EA GI + +H
Sbjct: 104 SGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIH 163
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+ + R + IR + + + +P+IANG
Sbjct: 164 GRTRMQFYEGRADWDAIRAVREVISVPLIANG 195
>gi|84393068|ref|ZP_00991834.1| NifR3/Smm1 family protein [Vibrio splendidus 12B01]
gi|84376320|gb|EAP93202.1| NifR3/Smm1 family protein [Vibrio splendidus 12B01]
Length = 322
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 118/235 (50%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + K+ KT + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKVWKTSKSQQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ EAA+ V++ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGADPQLMAEAAQFNVDNGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P++ +IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQHPELIEDILKAVVNAVDVPVTLKTRTGWDTDNRNCVQIAKIAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + + I+ Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTRACMYKGEAEYKHIKAAKQAVSIPVIANGDIDSPEKAKFVLEYTGADAL 221
>gi|440901315|gb|ELR52288.1| tRNA-dihydrouridine synthase 4-like protein, partial [Bos grunniens
mutus]
Length = 323
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 24/219 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 35 VCAPMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSA-KARDSEFTTNQGD------- 86
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP++++L G GA L++
Sbjct: 87 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINK 138
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 139 PELVRDMVKQVRNQVENPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEER 198
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247
P H E I+ + + + IP++ANG + + + V+
Sbjct: 199 HQPVH---YEAIKIIKESMSIPIVANGDIRSLKEAENVW 234
>gi|302876583|ref|YP_003845216.1| nifR3 family TIM-barrel protein [Clostridium cellulovorans 743B]
gi|307687258|ref|ZP_07629704.1| TIM-barrel protein, nifR3 family [Clostridium cellulovorans 743B]
gi|302579440|gb|ADL53452.1| TIM-barrel protein, nifR3 family [Clostridium cellulovorans 743B]
Length = 321
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 22/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ + N + LAPM + PFR L L+ G LVY+E + L LL ID
Sbjct: 4 GNLEFKNNVFLAPMAGVTDSPFRTLCLEQGCGLVYTEMVSAKGLFYGSENTEALLKVID- 62
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADP---ERALEAAKKVEHDVAAIDINMGCPKQFS 141
E+ + +QI DP +A E K + + ID+NMGCP
Sbjct: 63 ---------------EERPVAVQIFGRDPYIMAKACEYFDK-KDEFCIIDVNMGCPAPKI 106
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIA 199
+ G G+AL+ P++A I+ TL + S PV+ K R +E + + K +E G A
Sbjct: 107 VKNGEGSALMKEPELAYEIVKTLKNTTSKPVTVKFRKGFDEDNINAVEFAKVIEEAGADA 166
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
I VHGRT+A+ + + +I + + + IPVI NG
Sbjct: 167 IAVHGRTRAQMYQGKADWNIIAQVKKAVTIPVIGNG 202
>gi|126701180|ref|YP_001090077.1| transfer RNA-dihydrouridine synthase [Clostridium difficile 630]
gi|254977180|ref|ZP_05273652.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-66c26]
gi|255094510|ref|ZP_05323988.1| tRNA-dihydrouridine synthase [Clostridium difficile CIP 107932]
gi|255102766|ref|ZP_05331743.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-63q42]
gi|255308587|ref|ZP_05352758.1| tRNA-dihydrouridine synthase [Clostridium difficile ATCC 43255]
gi|255316261|ref|ZP_05357844.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-76w55]
gi|255518922|ref|ZP_05386598.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-97b34]
gi|255652101|ref|ZP_05399003.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-37x79]
gi|260685074|ref|YP_003216359.1| tRNA-dihydrouridine synthase [Clostridium difficile CD196]
gi|260688732|ref|YP_003219866.1| tRNA-dihydrouridine synthase [Clostridium difficile R20291]
gi|306521835|ref|ZP_07408182.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-32g58]
gi|384362750|ref|YP_006200602.1| tRNA-dihydrouridine synthase [Clostridium difficile BI1]
gi|423089075|ref|ZP_17077441.1| TIM-barrel protein, nifR3 family [Clostridium difficile
70-100-2010]
gi|115252617|emb|CAJ70460.1| transfer RNA-dihydrouridine synthase [Clostridium difficile 630]
gi|260211237|emb|CBA66759.1| tRNA-dihydrouridine synthase [Clostridium difficile CD196]
gi|260214749|emb|CBE07441.1| tRNA-dihydrouridine synthase [Clostridium difficile R20291]
gi|357558750|gb|EHJ40230.1| TIM-barrel protein, nifR3 family [Clostridium difficile
70-100-2010]
Length = 322
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 23/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ NK+ L+PM + LPFRL+ + G L+Y+E + L + +L
Sbjct: 4 GNLELKNKVFLSPMAGVTDLPFRLICKEQGCGLLYTEMINGKALCYDDENTKKMLKI--- 60
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPE---RALEAAKKVEHDVAAIDINMGCPKQFS 141
E++ + +QI ++PE RA E +++ +DINMGCP
Sbjct: 61 -------------EEEEHPVAVQIFGSEPEFMGRAAEIMNDYSNEI--LDINMGCPAPKV 105
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR--VFHNEADTIALCKRLEACGIIA 199
+ G G+AL+ P +A +L ++ N PV+ KIR N + + + K E CGI A
Sbjct: 106 VKNGDGSALMKNPKLAEEVLRAVVKNSKKPVTLKIRKGWDDNSVNAVEIAKIAEDCGISA 165
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ +HGRT+ + + ++I + ++L IPVI NG
Sbjct: 166 LAIHGRTREQFYTGKADWDIIAEIKKNLSIPVIGNG 201
>gi|433655953|ref|YP_007299661.1| tRNA-U20-dihydrouridine synthase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433294142|gb|AGB19964.1| tRNA-U20-dihydrouridine synthase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 319
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 20/214 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N + LAPM + P+R + D G Y+E +V K + + + L ID
Sbjct: 4 GDVEIKNNVFLAPMAGVTDKPYRRICKDMGCGFTYTE-MVSAKGLYYGSENTESLTDID- 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLT 143
++ + LQI +DP E AK++ + IDINMGCP +
Sbjct: 62 ---------------DEENVALQIFGSDPYIMGEIAKRLNTSNAKTIDINMGCPTPKIVK 106
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ PD+A +++ ++ N PV+ KIR ++ + + + K E+CG+ A+
Sbjct: 107 NGDGSALMMHPDVAESVIKAVVKNSIKPVTIKIRKGWDDDHINAVEIAKMAESCGVKAVA 166
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+ + R ++I+ + +LKIPVI NG
Sbjct: 167 IHGRTREQFYSGRADWDIIKKVKDNLKIPVIGNG 200
>gi|149237573|ref|XP_001524663.1| tRNA-dihydrouridine synthase 4 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451260|gb|EDK45516.1| tRNA-dihydrouridine synthase 4 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 342
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 25/222 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ PMVR + LPFR L Y D++Y+ ++ + V+ N++ DF
Sbjct: 32 VAGPMVRYSKLPFRELCRFYNVDIIYTPMILAREFVR-----NEMARYSDF--------- 77
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
T + +I+Q+G + E ++ + + V I IN GCP + + G+GAAL+S
Sbjct: 78 --TTNDKDTCVIVQVGVNNVEDFMKFIEMIHPYVDGIGINCGCPIRDQIREGIGAALMSE 135
Query: 154 PDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
PD+ ++ T SI + KIR+ ++ ++TI K++EA G I +HGRTK R
Sbjct: 136 PDLVAEMIATAKKQYGDSICIDTKIRIHNDLSETIEFVKKVEAAGTDIITIHGRTKTTRS 195
Query: 212 RHRNRIEMIRTLTQHL-KIPVIANG------GSKEIVDYGGV 246
++ I+ + H+ K+PVIANG + I DY GV
Sbjct: 196 SIPVNLDAIKLVRSHITKVPVIANGDCFTLEDCERIADYTGV 237
>gi|126135962|ref|XP_001384505.1| hypothetical protein PICST_58121 [Scheffersomyces stipitis CBS
6054]
gi|126091703|gb|ABN66476.1| tRNA dihydrouridine synthase [Scheffersomyces stipitis CBS 6054]
Length = 415
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 95/177 (53%), Gaps = 14/177 (7%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K I+ PMV + L +R+L+ YGADL Y+ + KL TE+K D + LDG
Sbjct: 20 KRIVGPMVDQSELAWRILSRRYGADLCYTP-MFHAKLFATEQKYRD-----NMWSELDGD 73
Query: 92 VVFRTCPREKNK-IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
EK++ +I+Q DP+ L+AAK VE A+D+N+GCP+ + G GA L
Sbjct: 74 F-------EKDRPLIVQFCANDPDYLLQAAKFVEDKCDAVDLNLGCPQGIAKKGKYGAFL 126
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
+ D+ ++ L NL +PV+ KIR++ + ++ K + G I VHGRT+
Sbjct: 127 MDDWDLVHTLIKNLHDNLKVPVTAKIRIYDDWEKSLQYAKMILDAGAQFITVHGRTR 183
>gi|336123047|ref|YP_004565095.1| tRNA-dihydrouridine synthase [Vibrio anguillarum 775]
gi|335340770|gb|AEH32053.1| tRNA-dihydrouridine synthase [Vibrio anguillarum 775]
Length = 331
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 115/235 (48%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + L T + + +++
Sbjct: 13 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPALWNTSKSMQRMVH--- 69
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ +AA+ VE+ IDINMGCP +
Sbjct: 70 -----EGESGIRS---------VQIAGADPQLMADAAQFSVENGAQIIDINMGCPAKKVN 115
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P+ IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 116 KKLAGSALLQFPETIEQILKAVVNAVDVPVTLKTRTGWDTDNKNCVYIAKLAEDCGIQAL 175
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + + IPVIANG +K ++DY G +L
Sbjct: 176 ALHGRTKACMYKGEAEYDSIKAVKNAISIPVIANGDIDSPEKAKYVLDYTGADAL 230
>gi|225375159|ref|ZP_03752380.1| hypothetical protein ROSEINA2194_00783 [Roseburia inulinivorans DSM
16841]
gi|225213033|gb|EEG95387.1| hypothetical protein ROSEINA2194_00783 [Roseburia inulinivorans DSM
16841]
Length = 327
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 129/273 (47%), Gaps = 33/273 (12%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +ILAPM + LPFRLL + GA L+ E+V K + + K + L TID
Sbjct: 10 GNVTLENNLILAPMAGVTDLPFRLLCKEQGAGLL-CMEMVSAKAILYKNKNTEELLTID- 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH---DVAAIDINMGCPKQFS 141
PREK + LQ+ +DP+ E AK++E D+ +DINMGCP
Sbjct: 68 -------------PREK-PVSLQLFGSDPDIMSEIAKQIEERPFDI--LDINMGCPVPKV 111
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIA 199
+ G G+AL+ P +A I+ + PV+ KIR ++ + + + E G A
Sbjct: 112 VNNGDGSALMKNPLLAGKIIEKTAKAIKKPVTVKIRKGFDDDHINAVEMAHIAEESGAAA 171
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLR 255
I VHGRT+ + + ++IR + + + IPVI NG +I+ V + NC
Sbjct: 172 IAVHGRTREQFYSGKADWDIIRQVKEAVSIPVIGNG---DILTADDVIRMQDETNCDGFM 228
Query: 256 NHYPVEKLP---KTILYAHCKYKRFEVPKYETV 285
E P K IL+ ++ E P + V
Sbjct: 229 IARGAEGNPWIFKQILHYFATGEKLEKPSFAEV 261
>gi|365540762|ref|ZP_09365937.1| tRNA-dihydrouridine synthase [Vibrio ordalii ATCC 33509]
Length = 322
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 115/235 (48%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + L T + + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPALWNTSKSMQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGADPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P+ IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQFPETIEQILKAVVNAVDVPVTLKTRTGWDTDNKNCVYIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + + IPVIANG +K ++DY G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKNAISIPVIANGDIDSPEKAKYVLDYTGADAL 221
>gi|269860977|ref|XP_002650205.1| tRNA-dihydrouridine synthase 1 [Enterocytozoon bieneusi H348]
gi|220066379|gb|EED43863.1| tRNA-dihydrouridine synthase 1 [Enterocytozoon bieneusi H348]
Length = 309
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 22/204 (10%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLV---KTERKVNDLLNTIDFVDPLDGSVVF 94
MV + FR+L Y D+ Y+E +V+ K+ K + + N T D PL
Sbjct: 1 MVSFSEEAFRILVRRYAVDVCYTE-MVNCKVFNQNKADPRKNRWYTTNDNDRPL------ 53
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154
++QI DP L +++ AIDIN+GCP+ + G G+ L+
Sbjct: 54 ----------VIQICGNDPSEMLATCLQIQQYCDAIDINLGCPQNIAKKGNYGSYLMDDF 103
Query: 155 DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR 214
+ NI++TL L++P+ CKIRVF + TI K +E G + VHGRT+ ++ ++
Sbjct: 104 EKVKNIISTLAEQLTVPIFCKIRVFESIEKTITYAKMIEKSGCSLLAVHGRTREQKGQNT 163
Query: 215 NRI--EMIRTLTQHLKIPVIANGG 236
+ + IR + L IPV++NGG
Sbjct: 164 GYVSFDHIRAVKNALSIPVVSNGG 187
>gi|385810051|ref|YP_005846447.1| tRNA-dihydrouridine synthase B [Ignavibacterium album JCM 16511]
gi|383802099|gb|AFH49179.1| tRNA-dihydrouridine synthase B [Ignavibacterium album JCM 16511]
Length = 335
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 107/217 (49%), Gaps = 19/217 (8%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N NI I+LAPM + L FRL+ + GAD+VY+E + LV+ K + L
Sbjct: 3 NVGNIKIEKAILLAPMEDVTDLSFRLVCKELGADVVYTEFVNSEGLVRGSEKTHKKLKI- 61
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFS 141
E+ + +QI +PE +EAAK E + IDIN GC +
Sbjct: 62 ---------------HHEERPVGIQIYGGNPESMIEAAKIAEDENPDIIDINAGCWVKNV 106
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIA 199
+ G G+ALL P+ ++ +I N+++PV+ K R+ +E + + KRLE G+ A
Sbjct: 107 VGCGAGSALLKDPEFMQKLIKGVIDNVNLPVTVKTRIGWDENSIQILEIAKRLEDIGVAA 166
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
+ VH RT+ R I + + +KIPV+ NGG
Sbjct: 167 LTVHCRTRKMGHRGEPDWSWIPKIKEVVKIPVVLNGG 203
>gi|240143461|ref|ZP_04742062.1| tRNA-dihydrouridine synthase [Roseburia intestinalis L1-82]
gi|257204494|gb|EEV02779.1| tRNA-dihydrouridine synthase [Roseburia intestinalis L1-82]
Length = 330
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 107/214 (50%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +ILAPM + LPFRLL + GA L+ E + ++ R +LL TID
Sbjct: 10 GNVTLENNLILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAILYKNRNTEELL-TID- 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLT 143
+ +N + LQ+ +DP+ E AK++E +DINMGCP +
Sbjct: 68 --------------KRENPVSLQLFGSDPDIMSEIAKQIEDRPFDILDINMGCPVPKVVN 113
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIG 201
G G+AL+ P +A I+ + PV+ KIR +E + + + + G A+
Sbjct: 114 NGDGSALMKNPKLAGEIIEKTARAIKKPVTVKIRKGFDEEHVNAVEMAHIAQESGAAAVA 173
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+++ + ++IR + + + IPVI NG
Sbjct: 174 VHGRTRSQFYSGKADWDIIRQVKEAVSIPVIGNG 207
>gi|425069273|ref|ZP_18472388.1| tRNA-dihydrouridine synthase B [Proteus mirabilis WGLW6]
gi|425073846|ref|ZP_18476952.1| tRNA-dihydrouridine synthase B [Proteus mirabilis WGLW4]
gi|404595117|gb|EKA95672.1| tRNA-dihydrouridine synthase B [Proteus mirabilis WGLW4]
gi|404597684|gb|EKA98179.1| tRNA-dihydrouridine synthase B [Proteus mirabilis WGLW6]
Length = 323
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I APM + PFR L D GA + SE L + ++ KT++ ++++ D L
Sbjct: 10 NCLIAAPMAGVTDRPFRSLCYDMGAGMTVSEMLSSNPQVWKTDKSRLRMVHS----DELG 65
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
R+ +QI +DP AAK VE IDINMGCP + G+
Sbjct: 66 ----IRS---------VQIAGSDPVDMATAAKINVESGAQIIDINMGCPAKKVNKKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL+ +++ + +PV+ KIR +E + + + K E CGI A+ +HGRT
Sbjct: 113 ALLRYPDLVAEILSAVVNAVDVPVTLKIRTGWSPDERNCVEIAKLAEDCGIAALTIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+ + + IRT+ Q + IP+IANG ++ ++DY G +L
Sbjct: 173 RECLFKGEAEYDSIRTVKQSVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|302687524|ref|XP_003033442.1| hypothetical protein SCHCODRAFT_256941 [Schizophyllum commune H4-8]
gi|300107136|gb|EFI98539.1| hypothetical protein SCHCODRAFT_256941 [Schizophyllum commune H4-8]
Length = 467
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + L FR+L YGA + Y+ + H +K D D + +
Sbjct: 35 SPKYVVAPMVDQSELAFRILCRRYGAQVAYTPMINAHVFPFYGKKQQD--KNFDVSEGEE 92
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
G+ +++Q +P+ L +A+ VE A+D+N+GCP+ + G G+
Sbjct: 93 GAQGL------DRPLVVQFCGNNPDELLASARIVEAHCDAVDLNLGCPQDIAKKGHYGSW 146
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ ++ TL NLSIPV+ K R+F + T+A K LE G + VHGRT+ +
Sbjct: 147 LQDEWELVYKLVNTLHENLSIPVTAKFRIFSDPERTLAYAKMLERAGAQILTVHGRTRDQ 206
Query: 210 RPRHRNRIEM--IRTLTQHLKIPVIANG 235
R + + I + Q + +PV+ANG
Sbjct: 207 RGVNSGLADWKQIAMVKQAVSVPVLANG 234
>gi|241952224|ref|XP_002418834.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
gi|223642173|emb|CAX44140.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
Length = 463
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 11/176 (6%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K I+APMV + L +R+L+ YGA L Y+ + KL T+ K + + T + LDG+
Sbjct: 57 KTIVAPMVDQSELAWRILSRRYGAQLCYTP-MFHAKLFATQEKYRNSMWTTN----LDGN 111
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
+T R +++Q DP+ L+AAK +E + AID+N+GCP+ + G GA L+
Sbjct: 112 ---QTLDR---PLVVQFCANDPDYLLQAAKLIEDECDAIDLNLGCPQGIARKGKYGAFLM 165
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
D+ ++ L NLSIPV+ KIR++ + ++ K + G I VHGRT+
Sbjct: 166 DDWDLVYKLIKNLHDNLSIPVTAKIRIYDDYEKSLKYAKMVLDAGAQFITVHGRTR 221
>gi|357055111|ref|ZP_09116187.1| hypothetical protein HMPREF9467_03159 [Clostridium clostridioforme
2_1_49FAA]
gi|355383484|gb|EHG30567.1| hypothetical protein HMPREF9467_03159 [Clostridium clostridioforme
2_1_49FAA]
Length = 321
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N N +ILAPM + LPFR+L + GA V +E + ++ R +LL
Sbjct: 6 GNTVLENNVILAPMAGVTDLPFRVLCREQGAGCVVTEMVSAKAVLYNNRNTRELLQ---- 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHD-VAAIDINMGCPKQFSLT 143
+DP ++ +Q+ ++P+ E A ++E ID+NMGCP +
Sbjct: 62 IDP------------DERPAAVQLFGSEPDIMAEIAARLEEGPYDYIDVNMGCPVPKIVN 109
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIG 201
G G+AL+ P A +L ++ + PV+ K R N+ + + K E+CG+ A+
Sbjct: 110 NGEGSALMKNPGRAREVLAAMVKAVKKPVTVKFRKGFNDLSVNAVEFAKMAESCGVAAVA 169
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + ++IR + + ++IPVI NG
Sbjct: 170 VHGRTREQYYSGKADWDIIRQVKEAVRIPVIGNG 203
>gi|291534721|emb|CBL07833.1| tRNA-U20-dihydrouridine synthase [Roseburia intestinalis M50/1]
Length = 330
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 107/214 (50%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +ILAPM + LPFRLL + GA L+ E + ++ R +LL TID
Sbjct: 10 GNVTLENNLILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAILYKNRNTEELL-TID- 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLT 143
+ +N + LQ+ +DP+ E AK++E +DINMGCP +
Sbjct: 68 --------------KRENPVSLQLFGSDPDIMSEIAKQIEDRPFDILDINMGCPVPKVVN 113
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIG 201
G G+AL+ P +A I+ + PV+ KIR +E + + + + G A+
Sbjct: 114 NGDGSALMKNPKLAGEIIEKTARAIKKPVTVKIRKGFDEEHVNAVEMAHIAQESGAAAVA 173
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+++ + ++IR + + + IPVI NG
Sbjct: 174 VHGRTRSQFYSGKADWDIIRQVKEAVSIPVIGNG 207
>gi|266624024|ref|ZP_06116959.1| tRNA-dihydrouridine synthase B [Clostridium hathewayi DSM 13479]
gi|288864155|gb|EFC96453.1| tRNA-dihydrouridine synthase B [Clostridium hathewayi DSM 13479]
Length = 328
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 23/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +ILAPM + LPFR+L + G +V +E + ++ R LL +
Sbjct: 6 GNVTLENNLILAPMAGVTDLPFRVLCKEQGCGMVVTEMVSAKAILYKNRNTKALLEVEER 65
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE---HDVAAIDINMGCPKQFS 141
P+ +Q+ +DPE + AK +E D+ ID+NMGCP
Sbjct: 66 ERPVS----------------VQLFGSDPEIMADIAKLIEPGPFDI--IDVNMGCPVPKI 107
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIA 199
+ G G+A++ P +A +L ++ + PV+ K R ++D + K E+CG+ A
Sbjct: 108 VNNGEGSAMMKNPRLAEAVLGAMVKAVKKPVTVKFRKGFTDSDVNAVEFAKMAESCGVAA 167
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ VHGRT+ + ++IR + + +KIPVI NG
Sbjct: 168 VAVHGRTREQYYSGTADWDIIRRVKEAVKIPVIGNG 203
>gi|88858409|ref|ZP_01133051.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas tunicata D2]
gi|88820026|gb|EAR29839.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas tunicata D2]
Length = 323
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV-KTERKVNDLLNTIDFVDPLD 89
N +I+APM + PFR L GA L SE L + V KTE+ +N + ++
Sbjct: 10 NNVIVAPMAGITDRPFRQLCRRLGAGLAVSEMLSSNPDVWKTEKSMNRMDHS-------- 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G R +QI ADPE +AA+ V + +DINMGCP + G+
Sbjct: 62 GESGIRA---------VQIAGADPELMAQAAQFNVANGAQIVDINMGCPAKKVNKKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ I+ ++S + +PV+ KIR + + + + K E GI ++ VHGRT
Sbjct: 113 ALLQYPDLVEEIIKAVVSAVDVPVTLKIRTGWDTDNRNGVEIAKIAERNGIASLAVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
KA + + IR + + + IP++ANG +K+++DY G ++
Sbjct: 173 KACMYKGEAEYQTIRDIKRSVSIPIVANGDITSPEKAKQVLDYTGADAI 221
>gi|297543866|ref|YP_003676168.1| NifR3 family TIM-barrel domain-containing protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296841641|gb|ADH60157.1| TIM-barrel protein, nifR3 family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 321
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 20/214 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI N + L+PM + PFRL+ + G L Y+E +V K + + +L ID
Sbjct: 4 GNIILKNNVFLSPMAGVTDKPFRLICQEMGCGLAYTE-MVSAKGLYYGSENTKMLTDID- 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
E+ K+ LQ+ +DP+ E A+K+ A I DINMGCP +
Sbjct: 62 ---------------EEEKVALQVFGSDPDIMGEIARKLNDSKALILDINMGCPTPKIVK 106
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIR--VFHNEADTIALCKRLEACGIIAIG 201
G GAAL+ P++A ++ +++ + PV+ KIR N + + + + E GI A+
Sbjct: 107 NGDGAALMLKPELAEKVMESVVKASNKPVTVKIRKGWDDNHVNAVEIAQIAEKAGIKAVA 166
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + +I+ + + +KIPVI NG
Sbjct: 167 VHGRTREQFYSGKADWSIIKKVKESVKIPVIGNG 200
>gi|327273572|ref|XP_003221554.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Anolis
carolinensis]
Length = 325
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 26/234 (11%)
Query: 23 NQANINYSNKI--ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLN 80
N ++ +S I I APMVR + L FR L Y DL Y+ +V V++E+ +
Sbjct: 24 NPTDLFHSGHIVKICAPMVRYSKLSFRTLVRKYNCDLCYTPMIVAADFVRSEKARHSEFT 83
Query: 81 TIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
T PL I+Q + + +AA V ID+N GCP+++
Sbjct: 84 TNQGDRPL----------------IVQFAAKEAQVLADAACIVSPFADGIDLNCGCPQRW 127
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGI 197
++ G GA L++ P++ +++ + + + P VS KIR+ + TI LC++ EA G+
Sbjct: 128 AMAEGYGACLINKPELVQDMVKLVKNQVENPLFSVSIKIRIHDDLKRTIDLCQKAEAAGV 187
Query: 198 IAIGVHGRTKAER--PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
I VHGR ER P H + I++I+ + + IPV+ANG K + D V +
Sbjct: 188 SWITVHGRNVEERHQPVHCDAIKIIK---ESVSIPVVANGDMKSLKDVEDVHQI 238
>gi|302308179|ref|NP_985016.2| AER158Cp [Ashbya gossypii ATCC 10895]
gi|299789331|gb|AAS52840.2| AER158Cp [Ashbya gossypii ATCC 10895]
gi|374108239|gb|AEY97146.1| FAER158Cp [Ashbya gossypii FDAG1]
Length = 434
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 12/177 (6%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ L +E+ D+ + +D + +D +V
Sbjct: 30 IVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSEKYRRDMWSDLDGDESIDRPLV 89
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+ C DPE L+AA+ VE+ A+D+N+GCP+ + G G+ L+
Sbjct: 90 VQFC------------ANDPEYLLKAAQLVENKCDAVDLNLGCPQGIAKKGHYGSFLMEE 137
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
D+ N++ TL + L++PV+ KIR+F + T+A K + G + VHGR + ++
Sbjct: 138 WDLVANLINTLHTKLAVPVTAKIRIFPDREKTLAYAKMVLDAGAQFLTVHGRLREQK 194
>gi|229366234|gb|ACQ58097.1| tRNA-dihydrouridine synthase 4-like PP35 [Anoplopoma fimbria]
Length = 318
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 20/219 (9%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y D+ +S +V +++ + + T + PL
Sbjct: 25 ICAPMVRYSKLAFRSLVRKYDCDICFSPMIVASDFMRSVKARDSEFTTNESDRPL----- 79
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
I+Q D + +AA V +D+N GCP++++++ G GA L++
Sbjct: 80 -----------IVQFAAPDAQTLADAACVVAPFSDGVDLNCGCPQRWAMSAGFGACLINK 128
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N + S KIR+ + T+ LC++ E+ G+ I VHGRT ER
Sbjct: 129 PELVKDMVRHVRNQVDNPNYTASIKIRIHKDLRQTVDLCQKAESAGVSWITVHGRTAEER 188
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
+ N + I+T+ + IPVIANG K + D + L
Sbjct: 189 HQPVN-YDAIKTIKDSVSIPVIANGDIKHLRDVESTYQL 226
>gi|422021696|ref|ZP_16368206.1| tRNA-dihydrouridine synthase B [Providencia sneebia DSM 19967]
gi|414098293|gb|EKT59942.1| tRNA-dihydrouridine synthase B [Providencia sneebia DSM 19967]
Length = 321
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 114/229 (49%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I APM + PFR L D GA + SE L + ++ KT++ L I +P
Sbjct: 10 NCLIAAPMAGITDRPFRSLCYDMGAGMTVSEMLSSNPQVWKTDKS---RLRMIHRDEPGV 66
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
SV QI DP+ AA+ VE IDINMGCP + G+
Sbjct: 67 RSV--------------QIAGNDPDEMAAAAQINVESGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ +IL+T++ + +PV+ KIR + E + I + K E CGI A+ +HGRT
Sbjct: 113 ALLRYPDLVKSILSTVVKAVDVPVTLKIRTGWSPEERNCIDIAKLAEDCGIQALTIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 173 RACLFNGEAEYDNIRVVKQTVAIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|406917730|gb|EKD56447.1| tRNA-U20-dihydrouridine synthase [uncultured bacterium]
Length = 353
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 30/239 (12%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSE----ELVDHKLVKTERKVNDLLNTIDFV--- 85
I LAPM + PFRL+ +GAD+V+SE E + H +K+ K+ +L +T +
Sbjct: 13 IALAPMAGITDQPFRLICKKFGADVVFSEMVSSEAIYHNNLKS--KILNLKSTTKNLKLE 70
Query: 86 -DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-------------------KVEH 125
+ L ++ + ++QI A+PE +AK K+E
Sbjct: 71 NNSLRKTLNLIKFSSAEQPFVVQIFGANPEHMAYSAKYISTGEWAKDYLKIKNLKLKIEA 130
Query: 126 DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEAD 184
A ID+N GCP + + G G+AL+ +A I+ ++ +PVS K R+ + + +
Sbjct: 131 IPAGIDLNFGCPAKDIIAQGAGSALMKNHKLASQIIKSVKMATKLPVSVKTRLGWSDSTE 190
Query: 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+ + +EA G A+ +HGRT + R EMI + + LKIPVI NGG + + DY
Sbjct: 191 ILEFSRIIEASGADALTIHGRTYKQGFASRADWEMIYRVKKQLKIPVILNGGVESVEDY 249
>gi|262273282|ref|ZP_06051097.1| tRNA dihydrouridine synthase B [Grimontia hollisae CIP 101886]
gi|262222655|gb|EEY73965.1| tRNA dihydrouridine synthase B [Grimontia hollisae CIP 101886]
Length = 335
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 25/229 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
N +I+APM + PFR L L YGA + SE + + + K + + +D
Sbjct: 23 ENNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPAMWHTAKSKNRMVHLD------ 76
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGA 148
EK +QI A+P EAA+ V++ +DINMGCP + G+
Sbjct: 77 ----------EKGIRSVQIAGAEPALMAEAARFCVDNGAQIVDINMGCPVKKVNKKLAGS 126
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL+ PDI IL ++S + +PV+ K R + + I + K E CGI A+ +HGRT
Sbjct: 127 ALLTRPDIIEQILKAVVSAVDVPVTLKTRTGWDPDNKNCIQIAKMAEDCGIQALALHGRT 186
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + + I+ + + + IPVIANG +K ++DY G +L
Sbjct: 187 RACMYKGEAEYDSIKAVKEAVSIPVIANGDIDSPQKAKFVLDYTGADAL 235
>gi|118595290|ref|ZP_01552637.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Methylophilales
bacterium HTCC2181]
gi|118441068|gb|EAV47695.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Methylophilales
bacterium HTCC2181]
Length = 341
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+N++ N + LAPM + PFR+L +GA + SE + + L+ K N
Sbjct: 4 SNLSIKNNLFLAPMAGVTDRPFRMLCKSFGAGVAVSEMVTSNSLLYGSEKTKRRANHEGE 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
VDP I +QI ADP+ +AAK + IDINMGCP +
Sbjct: 64 VDP----------------ISVQIAGADPKMMADAAKYNRDRGAQIIDINMGCPAKKICN 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G+ALL + +IL ++ ++ IPV+ KIR + + I + + E GI A+
Sbjct: 108 VMAGSALLKHEQLVDDILQAVVGSVDIPVTLKIRTGWDRENRNAIKIAQIAEEAGIKALA 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+A R + I + Q++ IPVIANG
Sbjct: 168 IHGRTRACLYRGDAEYDTIAEVKQNINIPVIANG 201
>gi|421551034|ref|ZP_15997034.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 69166]
gi|433471699|ref|ZP_20429083.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 68094]
gi|433477860|ref|ZP_20435180.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 70012]
gi|433526110|ref|ZP_20482740.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 69096]
gi|433539195|ref|ZP_20495670.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 70030]
gi|402328568|gb|EJU63935.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 69166]
gi|432207939|gb|ELK63924.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 68094]
gi|432215525|gb|ELK71414.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 70012]
gi|432260874|gb|ELL16131.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 69096]
gi|432272918|gb|ELL28020.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 70030]
Length = 336
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ DFVD
Sbjct: 10 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFVD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQVIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H++ + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVKAAGVPVTLKTRLGWHDDHKNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|418515232|ref|ZP_13081413.1| tRNA-dihydrouridine synthase B [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410707951|gb|EKQ66400.1| tRNA-dihydrouridine synthase B [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 332
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSE-ELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
K+ILAPM + PFRLL GA L SE + D + T + L+ +D
Sbjct: 11 KVILAPMSGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTHKS----LHRMDHAG---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + I +QI +P++ EAA+ V+H IDINMGCP + G+A
Sbjct: 63 ---------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
L+ D+ ILT ++ +++PV+ KIR H TIA + + CGI A+ VHGR
Sbjct: 114 LMRDEDLVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
T+ + I + L+IPV+ANG
Sbjct: 172 TRDQHYTGSAEYATIAQIKAALQIPVVANG 201
>gi|347300161|ref|NP_001003490.2| tRNA-dihydrouridine synthase 4-like [Danio rerio]
Length = 307
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 24/221 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y D+ ++ ++ +++ + + T
Sbjct: 19 VCAPMVRYSKLAFRTLVRKYDCDVCFTPMIIAADFMRSAKARDSEFTT------------ 66
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+ +I+Q D + +AA V +D+N GCP++++++ G GA L++
Sbjct: 67 ----NKNDRPLIVQFAAKDAQTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINK 122
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + I N + VS KIR+ + T+ LC+++EA G+ I VHGRT ER
Sbjct: 123 PELVKDMVRHVRNQIDNPNYAVSIKIRIHKDVRQTVDLCQKVEAAGVSYITVHGRTAIER 182
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
P H + I+T+ L IPVIANG K + D V L
Sbjct: 183 HQPVH---YDTIKTIKDSLSIPVIANGDIKSMQDVEAVCEL 220
>gi|440285921|ref|YP_007338686.1| tRNA-U20-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440045443|gb|AGB76501.1| tRNA-U20-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 321
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 108/230 (46%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DPE AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPEEMAWAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD +ILT ++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDQVQSILTAVVKAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|424881450|ref|ZP_18305082.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WU95]
gi|392517813|gb|EIW42545.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WU95]
Length = 338
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 20/212 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++ N+++LAPM + +PFR LA +GA LV +E + +LV + L+ F
Sbjct: 22 VSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLSAAGF-- 79
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGG 145
++Q+ + EAAK +H IDINMGCP + + G
Sbjct: 80 ---------------RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGY 124
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVH 203
G+AL+ P+ A ++ + + IPV+ K+R+ +E A + +R EA GI + +H
Sbjct: 125 SGSALMRDPEHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEAAGIQLVTIH 184
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+ + R + IR + + + IP+IANG
Sbjct: 185 GRTRMQFYEGRADWDAIRAVREVISIPLIANG 216
>gi|294626097|ref|ZP_06704705.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292599633|gb|EFF43762.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 332
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+ILAPM + PFRLL GA L SE + RK L +D
Sbjct: 11 KVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LYRMDHAG----- 62
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
E + I +QI +P++ EAA+ V+H IDINMGCP + G+AL
Sbjct: 63 --------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSAL 114
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGRT 206
+ D+ ILT ++ +++PV+ KIR H TIA + + CGI A+ VHGRT
Sbjct: 115 MRDEDLVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + I + L+IPV+ANG
Sbjct: 173 RDQHYTGSAEYATIAQIKAALQIPVVANG 201
>gi|440291875|gb|ELP85117.1| tRNA-dihydrouridine synthase, putative [Entamoeba invadens IP1]
Length = 340
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 110/205 (53%), Gaps = 6/205 (2%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
K +LAPMV + +R + L++GAD V++EEL+ +L + R D + + D D
Sbjct: 13 QKRVLAPMVGICFSSYRTMCLEHGADAVFTEELISKRLCQCIRVEED--GYVKYKDKDDV 70
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
+ + E++K ILQ+GT D +++ + V+ +V +DIN+GC FS GGMG AL
Sbjct: 71 MLTLKV--SERDKTILQLGTYDVATTVKSVELVK-EVCGVDINLGCGMSFSTKGGMGQAL 127
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
+S +I+ L+ L P+SCKIR+ + +T++ + L + G+ I +HGR +
Sbjct: 128 VSDRSKLESIIKALVP-LGQPISCKIRLQNTSEETVSFIQWLYSLGVCMITLHGRKHGQL 186
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANG 235
+ + ++ + P+ NG
Sbjct: 187 YDFDCDWDELIKVSNTITSPLFING 211
>gi|421465736|ref|ZP_15914423.1| TIM-barrel protein, nifR3 family [Acinetobacter radioresistens
WC-A-157]
gi|400204003|gb|EJO34988.1| TIM-barrel protein, nifR3 family [Acinetobacter radioresistens
WC-A-157]
Length = 347
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 108/209 (51%), Gaps = 19/209 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
KI +APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 16 EQKIWVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKS---LYRANF----D 68
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DPE+ EAA+ ++ + IDINMGCP + G+
Sbjct: 69 GELA---------PISAQIAGSDPEQLAEAARYQIANGAQIIDINMGCPAKKVCNKLAGS 119
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL ++ IL T+++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 120 ALLQDEELVARILDTVVAAVDVPVTLKTRLGYLNGQENILRVAKRAEEAGIAALALHGRT 179
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + + R ++IR + + + IPVIANG
Sbjct: 180 REDMYLNHARYDLIREVKKIIHIPVIANG 208
>gi|281208917|gb|EFA83092.1| chaperonin containing TCP1 beta subunit [Polysphondylium pallidum
PN500]
Length = 853
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 100/202 (49%), Gaps = 16/202 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + LPFRLL +G D+ YS ++ ++ + +T F D L
Sbjct: 70 IAAPMVRFSRLPFRLLCKKWGCDITYSPMILAEAFNRSAYARDSDFSTNIFDDSL----- 124
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
I+Q E AA+KV +DIN GCP+++ + G GA LL
Sbjct: 125 -----------IVQFAANSAEELAAAAEKVAKHCQGVDINCGCPQKWVMKEGYGANLLQH 173
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
P +++ + + + IP S KIRV N T+ L ++ EA G+ + VHGRT ++R H
Sbjct: 174 PQKITDMVKQVNNRVGIPCSIKIRVDKNLQKTVELVRQAEASGVSWLAVHGRTSSQRSSH 233
Query: 214 RNRIEMIRTLTQHLKIPVIANG 235
E I+ + + + IPV ANG
Sbjct: 234 PVDYEAIKLVKESVSIPVFANG 255
>gi|407070350|ref|ZP_11101188.1| tRNA-dihydrouridine synthase B [Vibrio cyclitrophicus ZF14]
Length = 322
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + K+ KT + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKVWKTSKSQQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ EAA+ V++ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGADPQLMAEAAQFNVDNGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P++ IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQHPELIEEILKAVVNAVDVPVTLKTRTGWDTDNRNCVQIAKIAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + + I+ Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTRACMYKGEAEYKHIKAAKQAVSIPVIANGDIDSPEKAKFVLEYTGADAL 221
>gi|417853785|ref|ZP_12499131.1| tRNA-dihydrouridine synthase B [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|425065956|ref|ZP_18469076.1| tRNA dihydrouridine synthase B [Pasteurella multocida subsp.
gallicida P1059]
gi|338218969|gb|EGP04688.1| tRNA-dihydrouridine synthase B [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|404382496|gb|EJZ78956.1| tRNA dihydrouridine synthase B [Pasteurella multocida subsp.
gallicida P1059]
Length = 334
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 25/222 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I LAPM + PFR + YGA L +SE +++T V +
Sbjct: 12 NRIFLAPMAGITDQPFRRICTHYGAGLTFSE----------------MMSTNPQVWHTEK 55
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +E +QI DP+ +AA+ VE+ IDINMGCP + G+A
Sbjct: 56 SKLRLAHHQEAGINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSA 115
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL ++ ++++PV+ KIR ++ + + + K E CGI A+ +HGRT+
Sbjct: 116 LLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTR 175
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDY 243
+ + I+ + + L IP+IANG +K ++DY
Sbjct: 176 SCMFEGEAEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDY 217
>gi|425063785|ref|ZP_18466910.1| tRNA dihydrouridine synthase B [Pasteurella multocida subsp.
gallicida X73]
gi|404382339|gb|EJZ78800.1| tRNA dihydrouridine synthase B [Pasteurella multocida subsp.
gallicida X73]
Length = 334
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 25/222 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I LAPM + PFR + YGA L +SE +++T V +
Sbjct: 12 NRIFLAPMAGITDQPFRRICTHYGAGLTFSE----------------MMSTNPQVWHTEK 55
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +E +QI DP+ +AA+ VE+ IDINMGCP + G+A
Sbjct: 56 SKLRLAHHQEAGINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSA 115
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL ++ ++++PV+ KIR ++ + + + K E CGI A+ +HGRT+
Sbjct: 116 LLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKITEQCGIQALTIHGRTR 175
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDY 243
+ + I+ + + L IP+IANG +K ++DY
Sbjct: 176 SCMFEGEAEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDY 217
>gi|289663593|ref|ZP_06485174.1| hypothetical protein XcampvN_11094 [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 332
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 23/209 (11%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+ILAPM + PFRLL GA L SE + + RK L+ +D
Sbjct: 11 KVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDRRFWGTRKS---LHRMDHAG----- 62
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
E + I +QI +P++ EAA+ V+H IDINMGCP + G+AL
Sbjct: 63 --------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSAL 114
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGRT 206
+ D+ ILT ++ +++PV+ KIR H IA + + CGI A+ VHGRT
Sbjct: 115 MRDEDLVARILTAVVRAVNVPVTLKIRTGWDCDHRNGPVIA--RIAQDCGIAALAVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + I + L+IPV+ANG
Sbjct: 173 RDQHYTGSAEYATIAQIKAALQIPVVANG 201
>gi|197287426|ref|YP_002153298.1| tRNA-dihydrouridine synthase B [Proteus mirabilis HI4320]
gi|227358312|ref|ZP_03842653.1| tRNA-dihydrouridine synthase B [Proteus mirabilis ATCC 29906]
gi|194684913|emb|CAR47079.1| tRNA-dihydrouridine synthase B [Proteus mirabilis HI4320]
gi|227161648|gb|EEI46685.1| tRNA-dihydrouridine synthase B [Proteus mirabilis ATCC 29906]
Length = 323
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I APM + PFR L D GA + SE L + ++ KT++ ++++ D L
Sbjct: 10 NCLIAAPMAGVTDRPFRSLCYDMGAGMTVSEMLSSNPQVWKTDKSRLRMVHS----DELG 65
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
R+ +QI +DP AAK VE IDINMGCP + G+
Sbjct: 66 ----IRS---------VQIAGSDPVDMATAAKINVEGGAQIIDINMGCPAKKVNKKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL+ +++ + +PV+ KIR +E + + + K E CGI A+ +HGRT
Sbjct: 113 ALLRYPDLVAEILSAVVNAVDVPVTLKIRTGWSPDERNCVEIAKLAEDCGIAALTIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+ + + IRT+ Q + IP+IANG ++ ++DY G +L
Sbjct: 173 RECLFKGEAEYDSIRTVKQSVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|40063277|gb|AAR38095.1| NifR3/Smm1 family protein [uncultured marine bacterium 578]
Length = 322
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 25/226 (11%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S+K++LAPM + PFR++ + GA L SE +V K LLNT LD
Sbjct: 9 SSKVLLAPMAGTSDKPFRMICREQGAALTTSEMVVMQK---------HLLNTNKSKHRLD 59
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGA 148
FR+ E++ I +QI ++ + E+AK+ +E IDINMGCP + G+
Sbjct: 60 ----FRS---EQSPISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVHGRT 206
AL+ + +I+ +++ ++IPV+ K+R NE + A + K E GI + +HGRT
Sbjct: 113 ALMKNEKLVEDIIKAVVNAVNIPVTLKMRTGWNEENKNAPTIAKIAEDNGIKMLAIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A++ + ++ + + IPV+ANG +K+++DY G
Sbjct: 173 RAQKYNGDAEYDTVKKIKGIVSIPVVANGDITSAQKAKKVLDYTGA 218
>gi|418296228|ref|ZP_12908072.1| tRNA-dihydrouridine synthase protein [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539660|gb|EHH08898.1| tRNA-dihydrouridine synthase protein [Agrobacterium tumefaciens
CCNWGS0286]
Length = 338
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 126/277 (45%), Gaps = 31/277 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N+ +LAPM + LPFR LA YGA LV +E + +LV + L
Sbjct: 18 GSVTIRNRAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGM 77
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
V + +Q+ + EAAK ++ IDINMGCP +
Sbjct: 78 VPHM-----------------VQLAGREAHFMAEAAKIAADNGAGIIDINMGCPAKKVTG 120
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI---ALCKRLEACGIIAI 200
G G+AL+ PD A +++ ++ + +PV+ K+R+ +E +TI + +R EA G+ I
Sbjct: 121 GYSGSALMRDPDHALSLIEATVNAVDVPVTLKMRLGWDE-NTINAPDIARRAEAAGVQLI 179
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGGVFSLNCAFL 254
+HGRT+ + R IR + + +P+IANG ++EI+ G ++
Sbjct: 180 TIHGRTRMQFYEGRADWNAIRAVRDVISVPLIANGDVETAEDAREILRRSGADAVMVGRG 239
Query: 255 RNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLF 291
P LP +L H R ++P YE +
Sbjct: 240 AQGQPW--LP-AVLAGHAAPHRDDIPAIAIEHYEMML 273
>gi|255320752|ref|ZP_05361927.1| tRNA-dihydrouridine synthase B [Acinetobacter radioresistens SK82]
gi|262379471|ref|ZP_06072627.1| tRNA-dihydrouridine synthase B [Acinetobacter radioresistens SH164]
gi|255302129|gb|EET81371.1| tRNA-dihydrouridine synthase B [Acinetobacter radioresistens SK82]
gi|262298928|gb|EEY86841.1| tRNA-dihydrouridine synthase B [Acinetobacter radioresistens SH164]
Length = 347
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 108/209 (51%), Gaps = 19/209 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
KI +APM + PFR L +GA SE + K ++ +K L +F D
Sbjct: 16 EQKIWVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKS---LYRANF----D 68
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + I QI +DPE+ EAA+ ++ + IDINMGCP + G+
Sbjct: 69 GELA---------PISAQIAGSDPEQLAEAARYQIANGAQIIDINMGCPAKKVCNKLAGS 119
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL ++ IL T+++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT
Sbjct: 120 ALLQDEELVARILDTVVAAVDVPVTLKTRLGYLNGQENILRVAKRAEEAGIAALALHGRT 179
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + + R ++IR + + + IPVIANG
Sbjct: 180 REDMYLNHARYDLIREVKKIIHIPVIANG 208
>gi|409437310|ref|ZP_11264429.1| tRNA-dihydrouridine synthase B [Rhizobium mesoamericanum STM3625]
gi|408751034|emb|CCM75585.1| tRNA-dihydrouridine synthase B [Rhizobium mesoamericanum STM3625]
Length = 333
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 20/219 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ N+++LAPM + +PFR LA +GA LV +E + +LV + + L + F
Sbjct: 15 VEVRNRVVLAPMSGVTDMPFRQLAWRHGAGLVVTEMVASRELVNSTAESWARLESAGF-- 72
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGG 145
++Q+ + EAAK +H IDINMGCP + + G
Sbjct: 73 ---------------EPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGY 117
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVH 203
G+AL+ PD A +++ + +S+PV+ K+R+ +E A + +R + GI I +H
Sbjct: 118 SGSALMRDPDHALSLIEATVKAVSVPVTLKMRLGWDENSINAPQIARRAQEAGIQLITIH 177
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
GRT+ + R + IR + + +P++ANG + + D
Sbjct: 178 GRTRMQFYEGRADWDKIRAVRDVITVPLVANGDVETVED 216
>gi|390598920|gb|EIN08317.1| FMN-linked oxidoreductase [Punctularia strigosozonata HHB-11173
SS5]
Length = 290
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 26/229 (11%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
++A + Y I APMV + LPFR+L YGA LVY++ L +L++
Sbjct: 4 DRATLEY----IAAPMVNQSDLPFRILVRRYGATLVYTQMLSPQRLLEDR---------- 49
Query: 83 DFVDPLDGSVVFRTCPREKNK-IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFS 141
D++D R E ++ +++Q+ +P+ + A+K+ H ID+N GCP++ +
Sbjct: 50 DYLD-----FHLRELGDENDRPVVVQLCGNNPDTLIRGARKLVHRCDGIDLNFGCPQEHA 104
Query: 142 LTGGMGAALLSTPD--IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIA 199
G G LL D + N+++++ ++LS+PVS KIR+ + + T L +RL G
Sbjct: 105 QEGHYGGYLLGQRDWPLVQNLISSMSASLSVPVSAKIRLTPDPSLTPVLAERLATSGASW 164
Query: 200 IGVHGRT-KAERPRH-RNRIEMIRTLTQHL--KIPVIANGGSKEIVDYG 244
I +H RT A R RH + ++ + + + ++PVI+NG + D G
Sbjct: 165 ITLHARTVSARRRRHGAADLSWVKAVREAVDPRVPVISNGNVRTFEDMG 213
>gi|345327855|ref|XP_003431210.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase 4-like
[Ornithorhynchus anatinus]
Length = 411
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 24/212 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y DL Y+ ++ V++ + + T PL
Sbjct: 124 ICAPMVRYSKLAFRTLVRRYDCDLCYTPMIIAADFVRSVKARDSEFTTNQGDRPL----- 178
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
I+Q D + +AA V ID+N GCP+++++ G GA L++
Sbjct: 179 -----------IVQFAAKDAQLLADAATLVRPYANGIDVNCGCPQRWAMAEGYGACLINN 227
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + +++ VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 228 PELVRDMVRQVRNQVEDVTFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEER 287
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
P H + I++I+ + L +PV+ NG K +
Sbjct: 288 HQPVHYDAIKIIK---ESLSVPVVVNGDVKSL 316
>gi|386833740|ref|YP_006239054.1| tRNA-dihydrouridine synthase B [Pasteurella multocida subsp.
multocida str. 3480]
gi|385200440|gb|AFI45295.1| tRNA-dihydrouridine synthase B [Pasteurella multocida subsp.
multocida str. 3480]
Length = 332
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 25/222 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I LAPM + PFR + YGA L +SE +++T V +
Sbjct: 10 NRIFLAPMAGITDQPFRRICTHYGAGLTFSE----------------MMSTNPQVWHTEK 53
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +E +QI DP+ +AA+ VE+ IDINMGCP + G+A
Sbjct: 54 SKLRLAHHQEAGINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL ++ ++++PV+ KIR ++ + + + K E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDY 243
+ + I+ + + L IP+IANG +K ++DY
Sbjct: 174 SCMFEGEAEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDY 215
>gi|299742242|ref|XP_001832336.2| t-diRNAhydrouridine synthase [Coprinopsis cinerea okayama7#130]
gi|298405094|gb|EAU89497.2| t-diRNAhydrouridine synthase [Coprinopsis cinerea okayama7#130]
Length = 349
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 24/243 (9%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97
MV + LPFRLL YGA Y++ L+ KL+ + + L + L +T
Sbjct: 1 MVNQSDLPFRLLVEQYGATSTYTQMLLPEKLLNDQEYLEFHLRDLQTFAKL------KTR 54
Query: 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPD-- 155
P +++Q+G DP+ ++A +K++ ID+N+GCP++ + GA LL D
Sbjct: 55 P-----VVVQLGGNDPDLVVQAGRKMQQWCDGIDLNLGCPQEAARDAHYGAYLLGQRDWP 109
Query: 156 IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN 215
+ I++++ ++ ++P S KIR+ T +RLEA G I +H RT + R R +
Sbjct: 110 LVEQIVSSMATSFTVPCSAKIRLCQPVGKTSEFSQRLEAQGASWITLHARTVSARRRRQG 169
Query: 216 RIEM--IRTLTQHLKIPVIANGGSKEI------VDYGGVFSLNC--AFLRNHYPVEKLPK 265
++ ++ L L++PVI+NG + +DY G L A L N + E P
Sbjct: 170 AADLSIVQELKSSLRVPVISNGNVRAFPDLQVNLDYTGADGLMVGEALLDNPW-YESRPT 228
Query: 266 TIL 268
T L
Sbjct: 229 TCL 231
>gi|15602952|ref|NP_246024.1| hypothetical protein PM1087 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721426|gb|AAK03171.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 334
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 25/222 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I LAPM + PFR + YGA L +SE +++T V +
Sbjct: 12 NRIFLAPMAGITDQPFRRICTHYGAGLTFSE----------------MMSTNPQVWHTEK 55
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +E +QI DP+ +AA+ VE+ IDINMGCP + G+A
Sbjct: 56 SKLRLAHHQEAGINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSA 115
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL ++ ++++PV+ KIR ++ + + + K E CGI A+ +HGRT+
Sbjct: 116 LLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTR 175
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDY 243
+ + I+ + + L IP+IANG +K ++DY
Sbjct: 176 SCMFEGEAEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDY 217
>gi|404483823|ref|ZP_11019040.1| hypothetical protein HMPREF1135_02100 [Clostridiales bacterium
OBRC5-5]
gi|404343182|gb|EJZ69549.1| hypothetical protein HMPREF1135_02100 [Clostridiales bacterium
OBRC5-5]
Length = 319
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 25/230 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NIN + L PM ++ LPFR L + GA L+ +E +V K + + K + L ID
Sbjct: 8 GNINIEGGLCLGPMAGVSDLPFRHLCKEMGASLLVTE-MVSAKAIYFKNKNTEPLMKID- 65
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT 143
+ ++ I LQ+ +DP+ + A +E D D NMGCP +
Sbjct: 66 --------------KGEHPIALQLFGSDPDIIAQMAASIEERDFDIFDFNMGCPVPKIVN 111
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ P + ILT L+ ++ PV+ KIR N+ + + + K EA G+ A+
Sbjct: 112 NGEGSALMKNPKLVEEILTKLVKSVKKPVTLKIRKGFNDDNINAVEIAKIAEASGVSAVA 171
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
VH RT+ + + +I+ + +L IPVI NG +KE+ +Y G
Sbjct: 172 VHARTREQYYSGKADWSIIKAVKSNLGIPVIGNGDVVDGKSAKEMYEYTG 221
>gi|38605042|sp|Q9CLW3.2|DUSB_PASMU RecName: Full=tRNA-dihydrouridine synthase B
Length = 332
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 25/222 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I LAPM + PFR + YGA L +SE +++T V +
Sbjct: 10 NRIFLAPMAGITDQPFRRICTHYGAGLTFSE----------------MMSTNPQVWHTEK 53
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +E +QI DP+ +AA+ VE+ IDINMGCP + G+A
Sbjct: 54 SKLRLAHHQEAGINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL ++ ++++PV+ KIR ++ + + + K E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDY 243
+ + I+ + + L IP+IANG +K ++DY
Sbjct: 174 SCMFEGEAEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDY 215
>gi|114331206|ref|YP_747428.1| putative TIM-barrel protein, nifR3 family protein [Nitrosomonas
eutropha C91]
gi|114308220|gb|ABI59463.1| tRNA-U20-dihydrouridine synthase [Nitrosomonas eutropha C91]
Length = 337
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 25/225 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
NK+I+APM + PFR L GA + SE + + L+ K V P+
Sbjct: 10 NKLIVAPMAGVTDRPFRQLCKRMGAAMAVSEMISSNSLLYGSEKTLRRARHEGEVKPVS- 68
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+QI ADP +AA+ +H IDINMGCP + G+A
Sbjct: 69 ---------------VQIAGADPAMMAQAARHNADHGAEIIDINMGCPAKKICNVMAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL D+ IL ++ + IPV+ KIR + + +A+ + E+ GI A+ +HGRT+
Sbjct: 114 LLKDEDLVSKILGAVVQAVDIPVTLKIRTGWDTQHKNAVAVARIAESAGIQALAIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
A R + + I T+ + IPVIANG ++E+++Y GV
Sbjct: 174 ACAYRGQAEYDTIATVKAAINIPVIANGDINTPEKAREVLEYTGV 218
>gi|313894573|ref|ZP_07828136.1| TIM-barrel protein, nifR3 family [Veillonella sp. oral taxon 158
str. F0412]
gi|313440763|gb|EFR59192.1| TIM-barrel protein, nifR3 family [Veillonella sp. oral taxon 158
str. F0412]
Length = 328
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 110/215 (51%), Gaps = 21/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ + ILAPM ++ + +RLLA ++GA LV +E + + + ++LL +
Sbjct: 9 GSVKIDGQAILAPMAGVSDIAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRLEEV 68
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
P+ +QI ++PE A+ +V D A +DINMGCP + +
Sbjct: 69 ERPVS----------------MQIFGSNPE-AIALGAQVVADAGADIVDINMGCPVKKVV 111
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAI 200
T G G+AL+ PD+A + + +++PV+ K+R+ + + + KR+E+ G+ AI
Sbjct: 112 TSGDGSALMKNPDLAARVAEAAVKAVNVPVTVKMRIGWDSDSINVVDFAKRVESTGVAAI 171
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRTK + I+ + + + +PVI NG
Sbjct: 172 AVHGRTKEQMYSGHADWSYIKAVKEAVSVPVIGNG 206
>gi|190891640|ref|YP_001978182.1| tRNA-dihydrouridine synthase [Rhizobium etli CIAT 652]
gi|190696919|gb|ACE91004.1| tRNA-dihydrouridine synthase protein [Rhizobium etli CIAT 652]
Length = 339
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 20/214 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+++ N+++LAPM + +PFR LA +GA LV +E + +LV + L F
Sbjct: 21 GSVSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLKAAGF 80
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
++Q+ + EAA+ +H IDINMGCP + +
Sbjct: 81 -----------------RPHMVQLAGREAHWMAEAARIAADHGADIIDINMGCPAKKVIG 123
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A ++ + + IPV+ K+R+ +E A + +R EA GI +
Sbjct: 124 GYSGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEAAGIQLVT 183
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+ + R + IR + + IP+IANG
Sbjct: 184 IHGRTRMQFYDGRADWDAIRAVRDVISIPLIANG 217
>gi|209549216|ref|YP_002281133.1| hypothetical protein Rleg2_1617 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534972|gb|ACI54907.1| TIM-barrel protein, nifR3 family [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 315
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 20/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+++LAPM + +PFR LA +GA LV +E + +LV + L F
Sbjct: 3 NRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLRAAGF------ 56
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
++Q+ + EAAK +H IDINMGCP + + G G+A
Sbjct: 57 -----------RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSA 105
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVHGRTK 207
L+ PD A ++ + + IPV+ K+R+ +E A + +R EA GI + +HGRT+
Sbjct: 106 LMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPEIARRAEAAGIQLVTIHGRTR 165
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ R + IR + + IP+IANG
Sbjct: 166 MQFYEGRADWDAIRPVRDVISIPLIANG 193
>gi|384417894|ref|YP_005627254.1| tRNA-dihydrouridine synthase B [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353460808|gb|AEQ95087.1| tRNA-dihydrouridine synthase B [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 328
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG--- 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
E + I +QI +P++ EAA+ V+H IDINMGCP + G+
Sbjct: 63 ----------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHG 204
AL+ ++ ILT ++ + +PV+ KIR H TIA + + CGI A+ VHG
Sbjct: 113 ALMRDEELVARILTAVVQAVDVPVTLKIRTGWDCDHRNGPTIA--RLAQDCGIAALAVHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+ + I + L+IPV+ANG
Sbjct: 171 RTRDQHYTGSAEYATIAQIKAALRIPVVANG 201
>gi|218710863|ref|YP_002418484.1| tRNA-dihydrouridine synthase B [Vibrio splendidus LGP32]
gi|218323882|emb|CAV20243.1| tRNA-dihydrouridine synthase B [Vibrio splendidus LGP32]
Length = 325
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + K+ KT + +++
Sbjct: 7 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKVWKTSKSQQRMVH--- 63
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ EAA+ V + IDINMGCP +
Sbjct: 64 -----EGESGIRS---------VQIAGADPQLMAEAAQFNVANGAQIIDINMGCPAKKVN 109
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P++ +IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 110 KKLAGSALLQHPELIEDILKAVVNAVDVPVTLKTRTGWDTDNRNCVQIAKIAEDCGIQAL 169
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + + I+ Q + IPVIANG +K +++Y G +L
Sbjct: 170 ALHGRTRACMYKGEAEYKHIKAAKQAVSIPVIANGDIDSPEKAKFVLEYTGADAL 224
>gi|154484004|ref|ZP_02026452.1| hypothetical protein EUBVEN_01712 [Eubacterium ventriosum ATCC
27560]
gi|149735046|gb|EDM50932.1| TIM-barrel protein, nifR3 family [Eubacterium ventriosum ATCC
27560]
Length = 317
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N + L PM + LPFRLL + G ++Y+E + ++ + N LLN ID
Sbjct: 4 GNVEIENSLALGPMAGVTDLPFRLLCKEQGCGMLYTEMVSAKAILYKNKNTNILLN-ID- 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALE-AAKKVEHDVAAIDINMGCPKQFSLT 143
+ ++ I +Q+ +DP+ E AK E IDINMGCP +
Sbjct: 62 --------------KAEHPIAVQLFGSDPDIMAEIGAKVAEGPCDFIDINMGCPVPKIVN 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G+ LL+ P + ILT ++ + PV+ K+R + + A + + E+CG+ AI
Sbjct: 108 NHEGSYLLTQPKLVEQILTKMVKAIKKPVTIKVRKGFKDGEIQAPEIARIAESCGVSAIA 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + ++I+ + + +KIPVI NG
Sbjct: 168 VHGRTREQYYSGKADWDVIKEVKEAVKIPVIGNG 201
>gi|58583410|ref|YP_202426.1| hypothetical protein XOO3787 [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84625224|ref|YP_452596.1| hypothetical protein XOO_3567 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188575339|ref|YP_001912268.1| tRNA-dihydrouridine synthase B [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58428004|gb|AAW77041.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84369164|dbj|BAE70322.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188519791|gb|ACD57736.1| tRNA-dihydrouridine synthase B [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 332
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG--- 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
E + I +QI +P++ EAA+ V+H IDINMGCP + G+
Sbjct: 63 ----------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHG 204
AL+ ++ ILT ++ + +PV+ KIR H TIA + + CGI A+ VHG
Sbjct: 113 ALMRDEELVARILTAVVQAVDVPVTLKIRTGWDCDHRNGPTIA--RLAQDCGIAALAVHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+ + I + L+IPV+ANG
Sbjct: 171 RTRDQHYTGSAEYATIAQIKAALRIPVVANG 201
>gi|224093091|ref|XP_002192992.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Taeniopygia guttata]
Length = 316
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y DL Y+ +V V++ + + T PL
Sbjct: 28 ICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSAKARDSEFTTNKGDHPL----- 82
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
I+Q + + +AA + ID+N GCP++++++ G GA L++
Sbjct: 83 -----------IVQFAAKEAQVLCDAACIICPFADGIDVNCGCPQRWAISEGYGACLINK 131
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + I N VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 132 PELVKDMVRHVRNQIDNPKFSVSIKIRIHEDLKRTVDLCQKAEAAGVSWITVHGRTIEER 191
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I++I+ Q + IP++ANG K + + V L
Sbjct: 192 HQPVHYDAIKIIK---QSMSIPIVANGDIKSLKEAENVHHLT 230
>gi|188992985|ref|YP_001904995.1| TIM-barrel protein; NifR3 family [Xanthomonas campestris pv.
campestris str. B100]
gi|167734745|emb|CAP52955.1| Putative TIM-barrel protein; NifR3 family [Xanthomonas campestris
pv. campestris]
Length = 468
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 145 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG--- 198
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
E + I +QI +P++ EAA+ V+H IDINMGCP + G+
Sbjct: 199 ----------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGS 248
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHG 204
AL+ D+ IL+ ++ + +PV+ KIR H TIA + + CGI A+ VHG
Sbjct: 249 ALMRDEDLVARILSAVVRAVDVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHG 306
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+ + I + L+IPVIANG
Sbjct: 307 RTRDQHYTGTAEYATIAQIKAALQIPVIANG 337
>gi|73668536|ref|YP_304551.1| hypothetical protein Mbar_A1003 [Methanosarcina barkeri str.
Fusaro]
gi|72395698|gb|AAZ69971.1| tRNA-U20-dihydrouridine synthase [Methanosarcina barkeri str.
Fusaro]
Length = 323
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 18/205 (8%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
++LAPM + L FRLL GADL Y+E + L+ RK S+
Sbjct: 17 LLLAPMADVTNLAFRLLCRQNGADLTYTEMISADALLNENRK----------------SL 60
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDV--AAIDINMGCPKQFSLTGGMGAAL 150
+ E +Q+ + PE+ EAA +E + ID+NMGCP + G G+AL
Sbjct: 61 LKGLSSPEDRPFGVQLVGSSPEKLREAALFIEDEYRPELIDVNMGCPAKRITGTGCGSAL 120
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
L++ + I++ L L PV+ KIR+ + T+ + + +E G A+ +HGR +
Sbjct: 121 LNSKKLIYEIISDLTDVLKTPVTAKIRILKRDEKTLEIARLIEEAGASALTIHGRRAEQM 180
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANG 235
+ + +IR + Q L IPVIANG
Sbjct: 181 YSGSSDLTVIRAVKQELSIPVIANG 205
>gi|386017379|ref|YP_005935677.1| tRNA-dihydrouridine synthase B DusB [Pantoea ananatis AJ13355]
gi|327395459|dbj|BAK12881.1| tRNA-dihydrouridine synthase B DusB [Pantoea ananatis AJ13355]
Length = 337
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++I APM + PFR L + GA + SE L + V K
Sbjct: 20 GNLQLRNRLIAAPMAGITDRPFRTLCHEMGAGMAVSEMLSSNPEVWASDKSR-------- 71
Query: 85 VDPLDGSVVFRTCPREKNKI-ILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
R +++ I +QI DP +AA+ V+ IDINMGCP +
Sbjct: 72 ---------LRMVHSDESGIRAVQIAGCDPSEMAQAARINVDAGAQVIDINMGCPAKKVN 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P + +IL+ +++ + +PV+ KIR + + +A+ + E CGI A+
Sbjct: 123 RKMAGSALLQYPSVVESILSAVVNAVDVPVTLKIRTGWDPENRNCVAIAQLAERCGIQAL 182
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + IRT+ Q + IP+IANG ++ ++DY G +L
Sbjct: 183 TIHGRTRACLFNGDAEYDSIRTVKQSVSIPIIANGDITDPHKARAVLDYTGADAL 237
>gi|440226575|ref|YP_007333666.1| putative tRNA-dihydrouridine synthase [Rhizobium tropici CIAT 899]
gi|440038086|gb|AGB71120.1| putative tRNA-dihydrouridine synthase [Rhizobium tropici CIAT 899]
Length = 341
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 110/214 (51%), Gaps = 20/214 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+++ N++ILAPM + LPFR LAL YGA LV +E + +LV+
Sbjct: 20 GSVSIRNRVILAPMSGVTDLPFRQLALRYGAGLVVTEMVASRELVQ-------------- 65
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
D + R+ + + ++Q+ + EAAK ++ IDINMGCP + +
Sbjct: 66 -DTAESWARLRSAGLKPH--MVQLAGREALWMAEAAKIATDNGADIIDINMGCPAKKVIG 122
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A ++ + ++IPV+ K+R+ +E A + +R E GI +
Sbjct: 123 GYSGSALMRDPDHALTLIEATVRAVNIPVTLKMRLGWDENSINAPYIARRAEEAGIQLVT 182
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+ + R + IR + + IP++ANG
Sbjct: 183 IHGRTRMQFYEGRADWDAIRAVRDAVSIPLVANG 216
>gi|429961459|gb|ELA41004.1| hypothetical protein VICG_01963 [Vittaforma corneae ATCC 50505]
Length = 341
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 21/216 (9%)
Query: 27 INYSNKI-----ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNT 81
I Y N I LAPMV +R+LA YGAD+ Y+E +V+ K+ +
Sbjct: 7 IEYLNSIKKPWKFLAPMVGNCEQAYRILARKYGADVCYTE-MVNCKVFNRSK-------- 57
Query: 82 IDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFS 141
+P+D ++ + +++QI DPE L+ V+ AIDIN GCP+ +
Sbjct: 58 ---CNPVDN--IWYSTSNIDRPLVVQICGDDPEAMLQTCLSVQDCCDAIDINFGCPQDVA 112
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIG 201
G G+ L D+ I++T + IP+ CKIRVF + T+ K E G +
Sbjct: 113 KRGHYGSYLQDEWDLISRIVSTCTLGIKIPLFCKIRVFDSIEKTVEYAKIFEKAGASLLV 172
Query: 202 VHGRTKAERPRHRN--RIEMIRTLTQHLKIPVIANG 235
VHGRT+ ++ + E IR + L IPV+ANG
Sbjct: 173 VHGRTREQKGVNTGLASWEHIRAVKAALNIPVVANG 208
>gi|421263838|ref|ZP_15714857.1| tRNA-dihydrouridine synthase B [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|401689009|gb|EJS84517.1| tRNA-dihydrouridine synthase B [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 334
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 25/222 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I LAPM + PFR + YGA L +SE +++T V +
Sbjct: 12 NRIFLAPMAGITDQPFRRICTHYGAGLTFSE----------------MMSTNPQVWHTEK 55
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +E +QI DP +AA+ VE+ IDINMGCP + G+A
Sbjct: 56 SKLRLAHHKEAGINAVQIAGCDPNEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSA 115
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL ++ ++++PV+ KIR ++ + + + K E CGI A+ +HGRT+
Sbjct: 116 LLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTR 175
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDY 243
+ + I+ + + L IP+IANG +K ++DY
Sbjct: 176 SCMFEGEAEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDY 217
>gi|402311701|ref|ZP_10830637.1| TIM-barrel protein, nifR3 family [Lachnospiraceae bacterium ICM7]
gi|400371225|gb|EJP24189.1| TIM-barrel protein, nifR3 family [Lachnospiraceae bacterium ICM7]
Length = 319
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 25/230 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NIN + L PM ++ LPFR L + GA L+ +E +V K + + K + L ID
Sbjct: 8 GNINIEGGLCLGPMAGVSDLPFRHLCKEMGASLLVTE-MVSAKAIYFKNKNTEPLMKID- 65
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT 143
+ ++ I LQ+ +DP+ + A +E D D NMGCP +
Sbjct: 66 --------------KGEHPIALQLFGSDPDIIAQMAASIEERDFDIFDFNMGCPVPKIVN 111
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ P + ILT L+ ++ PV+ KIR N+ + + + K EA G+ A+
Sbjct: 112 NGEGSALMKNPKLVEEILTKLVKSVKKPVTLKIRKGFNDDNINAVEIAKIAEASGVSAVA 171
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
+H RT+ + + +I+ + +L IPVI NG +KE+ +Y G
Sbjct: 172 IHARTREQYYSGKADWSIIKAVKSNLGIPVIGNGDVVDGKSAKEMYEYTG 221
>gi|295097749|emb|CBK86839.1| tRNA-U20-dihydrouridine synthase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 321
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL PD +ILT ++S + +PV+ KIR + + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKSILTAVVSAVDVPVTLKIRTGWSPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|21230237|ref|NP_636154.1| hypothetical protein XCC0763 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769771|ref|YP_244533.1| hypothetical protein XC_3469 [Xanthomonas campestris pv. campestris
str. 8004]
gi|38604923|sp|Q8PCH1.1|DUSB_XANCP RecName: Full=tRNA-dihydrouridine synthase B
gi|21111780|gb|AAM40078.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575103|gb|AAY50513.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 332
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG--- 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
E + I +QI +P++ EAA+ V+H IDINMGCP + G+
Sbjct: 63 ----------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHG 204
AL+ D+ IL+ ++ + +PV+ KIR H TIA + + CGI A+ VHG
Sbjct: 113 ALMRDEDLVARILSAVVRAVDVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+ + I + L+IPVIANG
Sbjct: 171 RTRDQHYTGTAEYATIAQIKAALQIPVIANG 201
>gi|242241086|ref|YP_002989267.1| tRNA-dihydrouridine synthase B [Dickeya dadantii Ech703]
gi|242133143|gb|ACS87445.1| TIM-barrel protein, nifR3 family [Dickeya dadantii Ech703]
Length = 321
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 110/228 (48%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM ++ PFR+L L GA + SE L + V K + D
Sbjct: 10 NRLIAAPMAGVSDRPFRVLCLTMGAGMAVSEMLSSNPEVWRSDKSRLRMVHSD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI DP E A A+ ++ IDINMGCP + G+A
Sbjct: 63 ---------EPGIRAVQIAGGDPAEMAAAASINMDSGAQIIDINMGCPAKKVNRKMAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ ILT ++ ++S+PV+ KIR + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKRILTAVVKSVSVPVTLKIRTGWAPEHRNCVEIARLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IRT+ Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRTVKQAVSIPIIANGDITDPHKARAVLDYTGADAL 221
>gi|326435349|gb|EGD80919.1| DUS4L protein [Salpingoeca sp. ATCC 50818]
Length = 558
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 27/221 (12%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR + +G D+ ++ +V V++ R DF
Sbjct: 27 ICAPMVRYSQLAFRHVVRRHGVDVAFTPMIVSDSFVQSWRA-----READFA-------- 73
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+ ++ Q A+ AA + AID+N GCP+++++ G+G+ L+S
Sbjct: 74 ---TSTQDEPVVAQFAAANARDFAHAAALMAPYADAIDLNCGCPQKWAMQDGLGSHLVSK 130
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER--P 211
P++ +++ + IPVS KIR+ + A+T+ LC+R E G I VHGR+ ER P
Sbjct: 131 PELVADMVKQARALSGIPVSIKIRLRNTTAETVELCRRAEQMGAAWISVHGRSPKERRCP 190
Query: 212 RHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGGV 246
H + I ++ + +PV+ANG ++ IVD G
Sbjct: 191 VHYDEIAAVKAA---MNVPVVANGDAFSLDDARMIVDKTGA 228
>gi|86147886|ref|ZP_01066191.1| NifR3/Smm1 family protein [Vibrio sp. MED222]
gi|85834313|gb|EAQ52466.1| NifR3/Smm1 family protein [Vibrio sp. MED222]
Length = 322
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + K+ KT + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKVWKTSKSQQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ EAA+ V + IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGADPQLMAEAAQFNVANGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P++ +IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQHPELIEDILKAVVNAVDVPVTLKTRTGWDTDNRNCVQIAKIAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + + I+ Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTRACMYKGEAEYKHIKAAKQAVSIPVIANGDIDSPEKAKFVLEYTGADAL 221
>gi|344231352|gb|EGV63234.1| dihydrouridine synthase [Candida tenuis ATCC 10573]
Length = 336
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 20/221 (9%)
Query: 17 LDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN 76
+++ N AN Y+ I PMVR + LPFR L ++ D+VYS ++ + V+ N
Sbjct: 16 INIIQVNIANNKYTT--IAGPMVRYSKLPFRALLRNFKCDIVYSPMILAREFVR-----N 68
Query: 77 DLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGC 136
D+ DF T E +I+Q+G + L V V I +N GC
Sbjct: 69 DIARLSDF-----------TTNSEDKSLIVQVGVNNELDLLRFVDMVHPYVDGIGLNCGC 117
Query: 137 PKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEA 194
P + + G+GAAL+S PD+ ++ + ++ + KIR+ + +T+ K+++A
Sbjct: 118 PIKEQVAEGIGAALMSEPDLVARMIKVVKDKYKDTVCIDAKIRIHKDLEETVEFVKKVQA 177
Query: 195 CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
G+ I +HGRTK+ R ++ I+ + Q +PV+ANG
Sbjct: 178 SGVDFITIHGRTKSTRSSIPVNLDAIKYVRQFTTVPVMANG 218
>gi|323347278|gb|EGA81552.1| Dus1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 301
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 17/206 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ ++ KL T +K + D LDGS V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTP-MLHAKLFATSKKYRE-----DNWSSLDGSSV 85
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R +++Q DPE L AAK VE A+D+N+GCP+ + G G+ L+
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
D+ N++ TL NL +PV+ KIR+F + ++ K + G + VHGR + ++ +
Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQK 198
Query: 214 RN--RIEMIRTLTQHLKIPVI--ANG 235
E I+ L +L + ANG
Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANG 224
>gi|68482886|ref|XP_714669.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|68483082|ref|XP_714575.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|46436155|gb|EAK95523.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|46436256|gb|EAK95622.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|238883810|gb|EEQ47448.1| tRNA-dihydrouridine synthase 1 [Candida albicans WO-1]
Length = 467
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 98/176 (55%), Gaps = 11/176 (6%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K I+APMV + L +R+L+ YGA L Y+ + KL T+ K + + T + LDG+
Sbjct: 59 KTIVAPMVDQSELAWRILSRRYGAQLCYTP-MFHAKLFATQEKYRNSMWTTN----LDGN 113
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
+ R +++Q DP+ L+AAK +E++ AID+N+GCP+ + G GA L+
Sbjct: 114 ---KDLDRP---LVVQFCANDPDYLLQAAKLIENECDAIDLNLGCPQGIARKGKYGAFLM 167
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
D+ ++ L NLSIPV+ KIR++ + ++ K + G I VHGRT+
Sbjct: 168 DDWDLVYKLIKNLHDNLSIPVTAKIRIYDDYEKSLKYAKMVLDAGAQFITVHGRTR 223
>gi|6323560|ref|NP_013631.1| Dus1p [Saccharomyces cerevisiae S288c]
gi|1730621|sp|P53759.1|DUS1_YEAST RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 1
gi|587531|emb|CAA86498.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285813922|tpg|DAA09817.1| TPA: Dus1p [Saccharomyces cerevisiae S288c]
Length = 423
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 17/206 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ ++ KL T +K + D LDGS V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTP-MLHAKLFATSKKYRE-----DNWSSLDGSSV 85
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R +++Q DPE L AAK VE A+D+N+GCP+ + G G+ L+
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
D+ N++ TL NL +PV+ KIR+F + ++ K + G + VHGR + ++ +
Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQK 198
Query: 214 RN--RIEMIRTLTQHLKIPVI--ANG 235
E I+ L +L + ANG
Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANG 224
>gi|291619129|ref|YP_003521871.1| DusB [Pantoea ananatis LMG 20103]
gi|291154159|gb|ADD78743.1| DusB [Pantoea ananatis LMG 20103]
Length = 349
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 25/234 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++I APM + PFR L + GA + SE L + V
Sbjct: 32 GNLQLRNRLIAAPMAGITDRPFRTLCHEMGAGMAVSEMLSSNPEVWAS------------ 79
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
D S + E +QI DP +AA+ V+ IDINMGCP +
Sbjct: 80 ----DKSRLRMVHSDEPGIRAVQIAGCDPSEMAQAARINVDAGAQVIDINMGCPAKKVNR 135
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAIG 201
G+ALL P + +IL+ +++ + +PV+ KIR + + +A+ + E CGI A+
Sbjct: 136 KMAGSALLQYPSVVESILSAVVNAVDVPVTLKIRTGWDPENRNCVAIAQLAERCGIQALT 195
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + IRT+ Q + IP+IANG ++ ++DY G +L
Sbjct: 196 IHGRTRACLFNGDAEYDSIRTVKQSVSIPIIANGDITDPHKARAVLDYTGADAL 249
>gi|399037112|ref|ZP_10734022.1| putative TIM-barrel protein, nifR3 family, partial [Rhizobium sp.
CF122]
gi|398065399|gb|EJL57037.1| putative TIM-barrel protein, nifR3 family, partial [Rhizobium sp.
CF122]
Length = 234
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 20/215 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+++LAPM + +PFR LA +GA LV +E + +LV + + L + F +P
Sbjct: 5 NRVVLAPMSGVTDMPFRQLAWRHGAGLVVTEMVASRELVNSTAESWARLESAGF-EPH-- 61
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
++Q+ + EAAK +H IDINMGCP + + G G+A
Sbjct: 62 --------------MVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSA 107
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVHGRTK 207
L+ PD A ++ + ++IPV+ K+R+ +E A + +R E G+ I +HGRT+
Sbjct: 108 LMRDPDHALGLIEATVKAVTIPVTLKMRLGWDENSINAPEIARRAEDAGVQLITIHGRTR 167
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ R + IR + + +P++ANG + + D
Sbjct: 168 MQFYEGRADWDAIRAVRDAITVPLVANGDVETVED 202
>gi|418521076|ref|ZP_13087122.1| tRNA-dihydrouridine synthase B [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410703052|gb|EKQ61549.1| tRNA-dihydrouridine synthase B [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 332
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 23/211 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG--- 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
E + I +QI +P++ EAA+ V+H IDINMGCP + G+
Sbjct: 63 ----------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHG 204
AL+ ++ ILT ++ +++PV+ KIR H TIA + + CGI A+ VHG
Sbjct: 113 ALMRDEELVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+ + I + L+IPV+ANG
Sbjct: 171 RTRDQHYTGSAEYATIAQIKAALQIPVVANG 201
>gi|381171061|ref|ZP_09880211.1| TIM-barrel , NifR3 family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688456|emb|CCG36698.1| TIM-barrel , NifR3 family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 332
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 23/211 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG--- 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
E + I +QI +P++ EAA+ V+H IDINMGCP + G+
Sbjct: 63 ----------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHG 204
AL+ ++ ILT ++ +++PV+ KIR H TIA + + CGI A+ VHG
Sbjct: 113 ALMRDEELVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+ + I + L+IPV+ANG
Sbjct: 171 RTRDQHYTGSAEYATIAQIKAALQIPVVANG 201
>gi|383855157|ref|XP_003703084.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Megachile rotundata]
Length = 478
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 103/215 (47%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + I+APMV + L +RLL+ +GA L Y+ L + + + L +
Sbjct: 28 SPRYIVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDPKYRREALASTA------ 81
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +I+Q DP LEAA E A+DIN+GCP+ + G GA
Sbjct: 82 ----------EDRPLIVQFCGNDPNTILEAALLAEPYCDAVDINIGCPQAIAKRGRYGAF 131
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ I++TL L IPV+CK+RVF T+ + LE+ G + VHGRT+ +
Sbjct: 132 LQDDWDLLRRIVSTLSKGLHIPVTCKLRVFAEIDKTVEYARMLESAGARLLTVHGRTREQ 191
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ E I+ + Q + IPV ANG + + D
Sbjct: 192 KGPQTGMASWEHIKAVRQAVTIPVFANGNIQCLQD 226
>gi|325292774|ref|YP_004278638.1| nitrogen regulation protein [Agrobacterium sp. H13-3]
gi|325060627|gb|ADY64318.1| nitrogen regulation protein [Agrobacterium sp. H13-3]
Length = 333
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 127/277 (45%), Gaps = 31/277 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N+ +LAPM + LPFR LA YGA LV +E + +LV + L
Sbjct: 13 GSVAIRNRAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGM 72
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
V + +Q+ + EAAK ++ IDINMGCP +
Sbjct: 73 VPHM-----------------VQLAGREAHFMAEAAKIAADNGAGIIDINMGCPAKKVTG 115
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI---ALCKRLEACGIIAI 200
G G+AL+ PD A +++ + + +PV+ K+R+ +E +TI + +R +A G+ I
Sbjct: 116 GYSGSALMRDPDHALSLIEATVGAVDVPVTLKMRLGWDE-NTINAPEIARRAQAAGVQLI 174
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGGVFSLNCAFL 254
+HGRT+ + R + IR + + + +P+IANG ++EI+ G ++
Sbjct: 175 TIHGRTRMQFYEGRANWDAIRAVREVISVPLIANGDVETAEDAREILSRSGADAVMVGRG 234
Query: 255 RNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLF 291
P LP +L H +R ++ Y+ +
Sbjct: 235 AQGQPW--LP-AVLAGHAAPQRADIADIAVEHYDMML 268
>gi|388258789|ref|ZP_10135964.1| tRNA-dihydrouridine synthase [Cellvibrio sp. BR]
gi|387937548|gb|EIK44104.1| tRNA-dihydrouridine synthase [Cellvibrio sp. BR]
Length = 329
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
++IILAPM + PFR L GA LV SE L + RK ++ V+P
Sbjct: 11 SQIILAPMAGVTDRPFRQLCRSLGAGLVISEMLTADASLWGSRKSTLRMDHTGEVEP--- 67
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
I +QI DP+ EAA+ + IDINMGCP + G+A
Sbjct: 68 -------------IAVQIAGGDPQMMAEAARLNAANGAQIIDINMGCPAKKVCKKAAGSA 114
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL + +IL ++S + IPV+ K R + E + I + + E GI A+ +HGRT+
Sbjct: 115 LLKDEQLVGDILQAVVSAVDIPVTLKFRTGWSTEERNAIRIARIAEDAGIQALALHGRTR 174
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A+ + I ++ +KIPV ANG +K ++DY G ++
Sbjct: 175 ADAFAGAAEYDTIASVVNAVKIPVFANGDIDSPHKAKTVLDYTGAAAV 222
>gi|349580208|dbj|GAA25368.1| K7_Dus1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 423
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 17/206 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ ++ KL T +K + D LDGS V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTP-MLHAKLFATSKKYRE-----DNWSSLDGSSV 85
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R +++Q DPE L AAK VE A+D+N+GCP+ + G G+ L+
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
D+ N++ TL NL +PV+ KIR+F + ++ K + G + VHGR + ++ +
Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQK 198
Query: 214 RN--RIEMIRTLTQHLKIPVI--ANG 235
E I+ L +L + ANG
Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANG 224
>gi|21241586|ref|NP_641168.1| hypothetical protein XAC0816 [Xanthomonas axonopodis pv. citri str.
306]
gi|38604925|sp|Q8PP72.1|DUSB_XANAC RecName: Full=tRNA-dihydrouridine synthase B
gi|21106942|gb|AAM35704.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 332
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 23/211 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG--- 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
E + I +QI +P++ EAA+ V+H IDINMGCP + G+
Sbjct: 63 ----------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHG 204
AL+ ++ ILT ++ +++PV+ KIR H TIA + + CGI A+ VHG
Sbjct: 113 ALMRDEELVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+ + I + L+IPV+ANG
Sbjct: 171 RTRDQHYTGSAEYATIAQIKAALQIPVVANG 201
>gi|365972357|ref|YP_004953918.1| tRNA-dihydrouridine synthase B [Enterobacter cloacae EcWSU1]
gi|365751270|gb|AEW75497.1| tRNA-dihydrouridine synthase B [Enterobacter cloacae EcWSU1]
Length = 321
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL PD +ILT ++S + +PV+ KIR + + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKSILTAVVSAVDVPVTLKIRTGWSPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|151946084|gb|EDN64315.1| tRNA dihydrouridine synthase [Saccharomyces cerevisiae YJM789]
gi|259148496|emb|CAY81741.1| Dus1p [Saccharomyces cerevisiae EC1118]
gi|365763678|gb|EHN05204.1| Dus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 423
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 17/206 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ ++ KL T +K + D LDGS V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTP-MLHAKLFATSKKYRE-----DNWSSLDGSSV 85
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R +++Q DPE L AAK VE A+D+N+GCP+ + G G+ L+
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
D+ N++ TL NL +PV+ KIR+F + ++ K + G + VHGR + ++ +
Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQK 198
Query: 214 RN--RIEMIRTLTQHLKIPVI--ANG 235
E I+ L +L + ANG
Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANG 224
>gi|256269754|gb|EEU05021.1| Dus1p [Saccharomyces cerevisiae JAY291]
Length = 423
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 13/177 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ ++ KL T +K + D LDGS V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTP-MLHAKLFATSKKYRE-----DNWSSLDGSSV 85
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R +++Q DPE L AAK VE A+D+N+GCP+ + G G+ L+
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
D+ N++ TL NL +PV+ KIR+F + ++ K + G + VHGR + ++
Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQK 195
>gi|354544705|emb|CCE41431.1| hypothetical protein CPAR2_304200 [Candida parapsilosis]
Length = 344
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 25/222 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I PMVR + LPFR L Y D+VY+ ++ + V+ ND+ DF
Sbjct: 30 IAGPMVRYSKLPFRELCRFYNVDIVYTPMILAREFVR-----NDIARYSDF--------- 75
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
T + +I+Q+G ++ E ++ + + V I IN GCP + + G+GAAL+S
Sbjct: 76 --TTNDKDQPVIVQVGVSNVEDFMKFIEMIHPYVDGIGINCGCPIRDQIREGIGAALMSK 133
Query: 154 PDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
P + +++ T + SI + KIR+ ++ +TI K +E G I +HGRTK R
Sbjct: 134 PRLVSDLIATAKAKYGDSICIDTKIRIHNDINETIEYVKLIEEAGTDIITIHGRTKTTRS 193
Query: 212 RHRNRIEMIRTLTQHLK-IPVIANG------GSKEIVDYGGV 246
++ I+T+ +H+K +PVIANG I +Y GV
Sbjct: 194 SVPVNLDAIKTIRRHIKTVPVIANGDCFTLDDCNSIAEYTGV 235
>gi|419958771|ref|ZP_14474831.1| tRNA-dihydrouridine synthase B [Enterobacter cloacae subsp. cloacae
GS1]
gi|388606288|gb|EIM35498.1| tRNA-dihydrouridine synthase B [Enterobacter cloacae subsp. cloacae
GS1]
Length = 321
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL PD +ILT ++S + +PV+ KIR + + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKSILTAVVSAVDVPVTLKIRTGWSPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|388580092|gb|EIM20409.1| Dus-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 464
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 22/213 (10%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYS-----EELVDHKLVKTERKVNDLLNTIDFVD 86
K I+APMV + L +R+L+ YGA L Y+ ++ K +++ D +N + D
Sbjct: 23 KKIVAPMVDQSELAWRILSRRYGATLAYTPMINAKQYSQLKTDSSKKIWFDKINNEEGAD 82
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
LD +I+Q DP+ LE+AK ++ A+D+N+GCP+ + G
Sbjct: 83 NLD------------RPLIVQFAANDPKLLLESAKDLQGKCDAVDLNLGCPQHIARRGRY 130
Query: 147 GAALLSTPDIACNILTTLISNLS-IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
G+ L D+ +++ TL NL IPV+ K RVF + T+ K LE+ G + VHGR
Sbjct: 131 GSWLQDEWDLIHSLINTLHENLQDIPVTAKFRVFDDVNRTVEYAKLLESAGAQILTVHGR 190
Query: 206 TKAERPRHRNRI---EMIRTLTQHLKIPVIANG 235
T+ E H + E I+ + + +PV ANG
Sbjct: 191 TR-EMKGHNTGLADWEKIKAVKDAVNVPVFANG 222
>gi|317494239|ref|ZP_07952655.1| dihydrouridine synthase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|365838578|ref|ZP_09379916.1| tRNA-dihydrouridine synthase B [Hafnia alvei ATCC 51873]
gi|316918012|gb|EFV39355.1| dihydrouridine synthase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|364559371|gb|EHM37354.1| tRNA-dihydrouridine synthase B [Hafnia alvei ATCC 51873]
Length = 334
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 113/235 (48%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+I N++I APM + PFR L + GA + SE L + V K + +D
Sbjct: 4 GHIELKNRLIAAPMAGITDRPFRTLCYEMGAGMAVSEMLSSNPEVWQTDKSRLRMVHLD- 62
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
E +QI DP+ + AA K+ D A IDINMGCP +
Sbjct: 63 ---------------EPGIRAVQIAGCDPDD-MAAAAKINADSGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PD+ IL+ +++ + +PV+ KIR + + + + + E CGI A+
Sbjct: 107 RKLAGSALLQYPDLVGKILSAVVNAVDVPVTLKIRTGWSPEHRNCVEIAQLAERCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + IRT+ Q + IP+IANG ++ ++DY G +L
Sbjct: 167 TIHGRTRACLFNGEAEYDSIRTVKQSVSIPIIANGDITDPHKARAVLDYTGADAL 221
>gi|385328675|ref|YP_005882978.1| nifR3 protein [Neisseria meningitidis alpha710]
gi|416169999|ref|ZP_11608265.1| dihydrouridine synthase [Neisseria meningitidis OX99.30304]
gi|308389527|gb|ADO31847.1| nifR3 protein [Neisseria meningitidis alpha710]
gi|325130494|gb|EGC53251.1| dihydrouridine synthase [Neisseria meningitidis OX99.30304]
Length = 374
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ DFVD
Sbjct: 48 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFVD---- 100
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 101 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 151
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H + + + ++ E CGI A+ VHGRT+
Sbjct: 152 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHEDHQNLPVIAKIAEDCGITALAVHGRTR 211
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 212 TQMYKGEARYELIAETKCRLNIPVWVNG 239
>gi|391325013|ref|XP_003737035.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Metaseiulus occidentalis]
Length = 303
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 19/209 (9%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + FR L Y D+ Y+ ++ K+ + N V
Sbjct: 17 ICAPMVRYSKQSFRELVRLYDVDIAYTPMVLAESFTKSAKARN---------------VE 61
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
F T ++ +I+Q + DPE AA+ V +D+N GCP+++++ G +LS
Sbjct: 62 FSTSSTDR-PLIVQFASHDPEEFALAAEMVSPLSDGVDLNCGCPQRWAIQEHYGCWMLSQ 120
Query: 154 PDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
P++ +++ T+ L + VS KIR+ + D++ +R+EA G I +HGRT A+R
Sbjct: 121 PELVADMIRTMRRRLPNAYTVSVKIRIKDDLKDSVEFVRRMEAAGASFITIHGRTPAQRA 180
Query: 212 RHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
N E ++ L Q ++IPV+ NGG + +
Sbjct: 181 EVPN-FEAVKILRQAVRIPVVHNGGVRSL 208
>gi|348568111|ref|XP_003469842.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Cavia porcellus]
Length = 317
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 24/221 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYHCDLCYTPMIVAADFVRS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + T+ C++ EA G+ I VHGRT ER
Sbjct: 134 PELVRDMVKQVRNQVENPRFSVSIKIRIHDDLTRTVDFCRKAEATGVNWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVHYDAIKIIK---ENMSIPVIANGDIRSLKEAENVWQI 231
>gi|429092683|ref|ZP_19155309.1| tRNA dihydrouridine synthase B [Cronobacter dublinensis 1210]
gi|426742542|emb|CCJ81422.1| tRNA dihydrouridine synthase B [Cronobacter dublinensis 1210]
Length = 321
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPEVWASDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE EAA+ VE+ + INMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMAEAARINVENGARLLIINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRTK 207
LL P++ +ILT +++ + +PV+ KIR + A+ + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPELVKSILTAVVNAVDVPVTLKIRTGWDPANRNCVEIAQLAEECGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + + IRT+ Q + IPVIANG ++ ++DY G +L
Sbjct: 174 ACLFQGNAEYDSIRTVKQKVSIPVIANGDITSPHKARAVLDYTGADAL 221
>gi|344204808|ref|YP_004789950.1| putative tRNA dihydrouridine synthetase [Mycoplasma putrefaciens
KS1]
gi|343956731|gb|AEM68446.1| putative tRNA dihydrouridine synthetase [Mycoplasma putrefaciens
KS1]
Length = 324
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 24/223 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI K++ PM ++ PFR+++ +GA LVY+E + + +K +L
Sbjct: 4 GNIEIKGKVVQGPMAGVSNEPFRVISKQHGASLVYAEMVSVAGMAHENKKTFSMLQ---- 59
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPK-QFS 141
++++ I +QI D + + A K ++ D ID+N+GCP + +
Sbjct: 60 ------------VNKDEHPISMQIFGNDVDEFINATKWIDKHVDCDIIDLNLGCPAPKVA 107
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIA 199
L G+ALL TP++ I+ +++N + PV+ KIR+ ++ + + + + +E G A
Sbjct: 108 LRSASGSALLKTPELIYEIVRAVVANTNKPVTAKIRLGWDKDSVNAVEVARLIEKAGASA 167
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
I VHGRT+++ R E I+ + +KIPVI NG +IVD
Sbjct: 168 IAVHGRTRSDFYTGRADWEKIKEVKDAVKIPVIGNG---DIVD 207
>gi|331003606|ref|ZP_08327102.1| hypothetical protein HMPREF0491_01964 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412326|gb|EGG91718.1| hypothetical protein HMPREF0491_01964 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 320
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 19/218 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NIN + L PM ++ LPFR L + GA L+ +E +V K + + K + L ID
Sbjct: 9 GNINIEGGLCLGPMAGVSDLPFRRLCKEMGASLLVTE-MVSAKAIYFKNKNTEPLMKID- 66
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPER-ALEAAKKVEHDVAAIDINMGCPKQFSLT 143
++++ + LQ+ +DP+ AL AA+ D D NMGCP +
Sbjct: 67 --------------KDEHPVALQLFGSDPDIIALMAAQIENRDFDIFDFNMGCPVPKIVN 112
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ P + IL+ L+ ++ PV+ KIR NE + + + K EA G+ AI
Sbjct: 113 NGEGSALMKNPKLVEEILSKLVKSVKKPVTLKIRKGFNEDNINAVEIAKIAEASGVSAIA 172
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
VH RT+ + + +I+ + + IPVI NG K+
Sbjct: 173 VHARTREQYYSGKADWSIIKAVKSAVNIPVIGNGDVKD 210
>gi|283788098|ref|YP_003367963.1| tRNA-dihydrouridine synthase B [Citrobacter rodentium ICC168]
gi|282951552|emb|CBG91251.1| tRNA-dihydrouridine synthase B [Citrobacter rodentium ICC168]
Length = 321
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGVRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ +ILT +++ + +PV+ KIR + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 174 ACLFNGDAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|15965210|ref|NP_385563.1| NIFR3-like protein [Sinorhizobium meliloti 1021]
gi|384529170|ref|YP_005713258.1| nifR3 family TIM-barrel protein [Sinorhizobium meliloti BL225C]
gi|15074390|emb|CAC46036.1| tRNA-dihydrouridine synthase B [Sinorhizobium meliloti 1021]
gi|333811346|gb|AEG04015.1| TIM-barrel protein, nifR3 family [Sinorhizobium meliloti BL225C]
Length = 342
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 20/221 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++ LAPM + LPFR+LA +GA V +E + +LV + L
Sbjct: 20 GNVEIRNRVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLKN-SG 78
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
+DP I+Q+ + EAA+ VE + A I DINMGCP +
Sbjct: 79 IDPH----------------IVQLAGREAHWMAEAARIVEANGADIIDINMGCPAKKVTG 122
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A +++ + ++PV+ K+R+ +E A + +R E G+ AI
Sbjct: 123 GYSGSALMRDPDHALSLIEATVKAATVPVTLKMRLGWDENSINAPLIARRAEEAGVKAIT 182
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+HGRT+ + + + I + + + IP+IANG + D
Sbjct: 183 IHGRTRMQFYNGKADWDAIGAVREVVSIPLIANGDVDSVAD 223
>gi|260947234|ref|XP_002617914.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847786|gb|EEQ37250.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 415
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 14/177 (7%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K I+APMV + L +R+L+ YGA+L Y+ + +L TE K + + + DG
Sbjct: 19 KTIVAPMVDQSELAWRILSRRYGAELCYTP-MFHARLFATEEKYRNKMWS-----EWDGD 72
Query: 92 VVFRTCPREKNK-IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
REK++ +++Q DPE L+AAK VE A+D+N+GCP+ + G GA L
Sbjct: 73 -------REKDRPLVVQFCANDPEYLLQAAKFVEDKCDAVDLNLGCPQGIARKGNYGAFL 125
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
+ D+ ++ L NL PV+ KIRV+ + ++ K + + G I +HGRT+
Sbjct: 126 MDDWDLVYKLIRKLHDNLKCPVTAKIRVYDDWEKSLEYAKMVLSAGAQFITIHGRTR 182
>gi|392297501|gb|EIW08601.1| Dus1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 423
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 17/206 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ ++ KL T +K + D LDGS V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTP-MLHAKLFATSKKYRE-----DNWSSLDGSSV 85
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R +++Q DPE L AAK VE A+D+N+GCP+ + G G+ L+
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
D+ N++ TL NL +PV+ KIR+F + ++ K + G + VHGR + ++ +
Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRIREQKGQK 198
Query: 214 RN--RIEMIRTLTQHLKIPVI--ANG 235
E I+ L +L + ANG
Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANG 224
>gi|421559506|ref|ZP_16005379.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 92045]
gi|402335305|gb|EJU70571.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 92045]
Length = 336
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ DFVD
Sbjct: 10 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFVD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H + + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHEDHQNLPVIAKIAEDCGITALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|401624451|gb|EJS42508.1| dus1p [Saccharomyces arboricola H-6]
Length = 423
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 97/177 (54%), Gaps = 13/177 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ ++ KL T +K + D LDGS +
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTP-MLHAKLFATSKKYRE-----DNWSSLDGSDL 85
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R +++Q DPE L AAK VE A+D+N+GCP+ + G G+ L+
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
++ N++ TL +NL +PV+ KIR+F + +++ K + G + VHGR + ++
Sbjct: 139 WELVHNLINTLHNNLKVPVTAKIRIFDDREKSLSYAKMVLDAGAQFLTVHGRIREQK 195
>gi|384536549|ref|YP_005720634.1| tRNA-dihydrouridine synthase B [Sinorhizobium meliloti SM11]
gi|336033441|gb|AEH79373.1| tRNA-dihydrouridine synthase B [Sinorhizobium meliloti SM11]
Length = 342
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 20/221 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++ LAPM + LPFR+LA +GA V +E + +LV + L
Sbjct: 20 GNVEIRNRVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLKN-SG 78
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
+DP I+Q+ + EAA+ VE + A I DINMGCP +
Sbjct: 79 IDPH----------------IVQLAGREAHWMAEAARIVEANGADIIDINMGCPAKKVTG 122
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G+AL+ PD A +++ + ++PV+ K+R+ +E A + +R E G+ AI
Sbjct: 123 GYSGSALMRDPDHALSLIEATVKAATVPVTLKMRLGWDENSINAPLIARRAEEAGVKAIT 182
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+HGRT+ + + + I + + + IP+IANG + D
Sbjct: 183 IHGRTRMQFYNGKADWDAIGAVREVVSIPLIANGDVDSVAD 223
>gi|386744124|ref|YP_006217303.1| tRNA-dihydrouridine synthase B [Providencia stuartii MRSN 2154]
gi|384480817|gb|AFH94612.1| tRNA-dihydrouridine synthase B [Providencia stuartii MRSN 2154]
Length = 321
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 113/229 (49%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I APM + PFR L D GA + SE L + ++ KT++ L I +P
Sbjct: 10 NCLIAAPMAGITDRPFRSLCYDMGAGMTVSEMLSSNPQVWKTDKS---RLRMIHRDEPGV 66
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
SV QI DP+ AA+ VE IDINMGCP + G+
Sbjct: 67 RSV--------------QIAGNDPDEMAAAAQINVESGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ +IL+ ++ + +PV+ KIR + E + I + K E CGI A+ +HGRT
Sbjct: 113 ALLRYPDLVKSILSAVVKAVDVPVTLKIRTGWSPEERNCIEIAKLAEDCGIQALTIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 173 RACLFNGEAEYDNIRAVKQTVAIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|452977524|gb|EME77290.1| hypothetical protein MYCFIDRAFT_83236 [Pseudocercospora fijiensis
CIRAD86]
Length = 293
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 17/219 (7%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97
MVR + LPFRLL YGAD+VY+ ++ H+ ++++ + T PL+
Sbjct: 1 MVRYSKLPFRLLVSQYGADVVYTPMMLAHEFIRSQTARDSDFTT----HPLE-------- 48
Query: 98 PREKNKIIL-QIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDI 156
R++ KI++ Q +++PE AA + V +D+N GCP+ +++ G+G +L+ P+
Sbjct: 49 -RQEGKILIAQFASSEPEELARAADLISPWVDGVDLNCGCPQSWAIKEGIGCSLMEQPEK 107
Query: 157 ACNILTTLISNL---SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
++ L VS KIR+ N T+ ++ G+ I VHGRT+++R
Sbjct: 108 VGEMVRVTKGRLIGRGKSVSVKIRIDKNLQKTVKWLGVVQDAGVDYITVHGRTRSQRSST 167
Query: 214 RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
I L +++P++ANG + D G + + A
Sbjct: 168 PPDYAAIGVLRTFIRVPMVANGDAYSKEDVGRIARITGA 206
>gi|386077691|ref|YP_005991216.1| tRNA-dihydrouridine synthase B DusB [Pantoea ananatis PA13]
gi|354986872|gb|AER30996.1| tRNA-dihydrouridine synthase B DusB [Pantoea ananatis PA13]
Length = 321
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 25/234 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++I APM + PFR L + GA + SE L + V
Sbjct: 4 GNLQLRNRLIAAPMAGITDRPFRTLCHEMGAGMAVSEMLSSNPEVWAS------------ 51
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
D S + E +QI DP +AA+ V+ IDINMGCP +
Sbjct: 52 ----DKSRLRMVHSDEPGIRAVQIAGCDPSEMAQAARINVDAGAQVIDINMGCPAKKVNR 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G+ALL P + +IL+ +++ + +PV+ KIR + + +A+ + E CGI A+
Sbjct: 108 KMAGSALLQYPSVVESILSAVVNAVDVPVTLKIRTGWDPENRNCVAIAQLAERCGIQALT 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + IRT+ Q + IP+IANG ++ ++DY G +L
Sbjct: 168 IHGRTRACLFNGDAEYDSIRTVKQSVSIPIIANGDITDPHKARAVLDYTGADAL 221
>gi|325662824|ref|ZP_08151393.1| hypothetical protein HMPREF0490_02133 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470876|gb|EGC74105.1| hypothetical protein HMPREF0490_02133 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 325
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ N ILAPM + LPFRLL + GA L+ E+V K ++ + K NT D
Sbjct: 10 GTVELENPYILAPMAGVTDLPFRLLCKEQGAGLL-CMEMVSAKAIQYKNK-----NTQDL 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT 143
+ E+ + LQ+ ++P+ E AK++E A +DINMGCP +
Sbjct: 64 L----------RIHEEERPVSLQLFGSEPDTISEIAKQIEELPFAILDINMGCPVPKIVK 113
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ P + I++ + + PV+ KIR +++ + + + K +E G A+
Sbjct: 114 NGEGSALMKQPKLVYEIVSKTVKAIQKPVTVKIRKGFDDSCINAVEIAKVIEEAGGAAVA 173
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + E+IR + + + IPVI NG
Sbjct: 174 VHGRTREQYYSGKADWEIIRKVKEAVSIPVIGNG 207
>gi|296104976|ref|YP_003615122.1| tRNA-dihydrouridine synthase B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|392980943|ref|YP_006479531.1| tRNA-dihydrouridine synthase B [Enterobacter cloacae subsp.
dissolvens SDM]
gi|295059435|gb|ADF64173.1| tRNA-dihydrouridine synthase B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|392326876|gb|AFM61829.1| tRNA-dihydrouridine synthase B [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 321
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL PD +ILT ++S + +PV+ KIR + + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKSILTAVVSAVDVPVTLKIRTGWSPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|123430787|ref|XP_001307959.1| TIM-barrel protein, nifR3 family protein [Trichomonas vaginalis G3]
gi|121889614|gb|EAX95029.1| TIM-barrel protein, nifR3 family protein [Trichomonas vaginalis G3]
Length = 301
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 17/199 (8%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97
M + FR +A + GAD+ +E + LV +K DLL+
Sbjct: 1 MAGYTDIAFREVATEKGADITVTEMVSAMALVYENKKTIDLLDI---------------S 45
Query: 98 PREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDI 156
P+EK K+ +QI +DP+ EAA+ + ++D + +DINMGCP + G+ LLS P +
Sbjct: 46 PKEK-KVAVQIFGSDPDVMGEAARILNDYDFSYVDINMGCPAPKIVKNNSGSHLLSNPSL 104
Query: 157 ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNR 216
+I+ +++ N + PV+ K+R ++ K +EA G + VHGRT+ E +
Sbjct: 105 VYDIVKSVVKNSNKPVTAKVRKGIGGVSSMKAIKNIEAAGASFVTVHGRTREEYYTGKAD 164
Query: 217 IEMIRTLTQHLKIPVIANG 235
+ I+ + +++KIPVI NG
Sbjct: 165 WDFIKEVKENVKIPVIGNG 183
>gi|433469625|ref|ZP_20427043.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 98080]
gi|432202794|gb|ELK58851.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 98080]
Length = 336
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ +K L+ DF D
Sbjct: 10 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTKKT---LHRSDFAD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQVIDINMGCPAKKVCNAQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H++ + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHDDHQNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|334133006|ref|ZP_08506761.1| tRNA-dihydrouridine synthase B [Methyloversatilis universalis FAM5]
gi|333441916|gb|EGK69888.1| tRNA-dihydrouridine synthase B [Methyloversatilis universalis FAM5]
Length = 343
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 34/235 (14%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV----KTERKVNDLLNT 81
N N + +APM + PFR L GA L SE + + L+ KT+R+ N
Sbjct: 5 GFNLRNNLFVAPMAGVTDRPFRQLCKKLGAGLAVSEMVTSNSLLYGSAKTQRRANH---- 60
Query: 82 IDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQF 140
DG V I +QI ADP+ +AA+ V+ IDINMGCP +
Sbjct: 61 -------DGEVA---------PISVQIAGADPKMMADAARHNVDRGAQIIDINMGCPAKK 104
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIA--LCKRLEACGI 197
G+AL+ + IL ++ + PV+ K+R N A+ A L + E CGI
Sbjct: 105 ICNVMAGSALMQDEPLVARILEAVVQAVPDTPVTLKMRTGWNRANKNAPMLARMAEQCGI 164
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
A+ +HGRT+A++ + IRT+ + IPVIANG ++E++D G
Sbjct: 165 RALAIHGRTRADQYTGHAEYDTIRTVKAAVSIPVIANGDITTPQKAREVLDISGA 219
>gi|163746230|ref|ZP_02153588.1| tRNA-dihydrouridine synthase [Oceanibulbus indolifex HEL-45]
gi|161380115|gb|EDQ04526.1| tRNA-dihydrouridine synthase [Oceanibulbus indolifex HEL-45]
Length = 330
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 36/226 (15%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+N+ + LAPM + LP+R L +GA LV SE + +L+
Sbjct: 6 LNFDPPVFLAPMAGITDLPYRSLVARFGAGLVVSEMVASQELLSR--------------- 50
Query: 87 PLDGSVVFRTCPREKNKIILQ-IGTA------DPERALEAAKKVEHDVAAI-DINMGCPK 138
R REK ++ L IGT+ + E EAA+ VE A I DINMGCP
Sbjct: 51 --------RPGTREKAELGLDVIGTSVQLAGREAEPMAEAARMVEAMGARIIDINMGCPA 102
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACG 196
+ G G+AL+ TPD A ++ ++ +++PV+ K R+ N + + KR E G
Sbjct: 103 KKVTQGASGSALMKTPDHALRLIEAVVGAVNVPVTLKTRLGWDDNMLNAAPIAKRAEDAG 162
Query: 197 IIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG---GSKE 239
+ I +HGRT+ + + R IR + + + +PVIANG GS E
Sbjct: 163 VQMITIHGRTRCQFYKGRADWAAIRAVKETVNVPVIANGDIIGSDE 208
>gi|220930307|ref|YP_002507216.1| hypothetical protein Ccel_2942 [Clostridium cellulolyticum H10]
gi|220000635|gb|ACL77236.1| TIM-barrel protein, nifR3 family [Clostridium cellulolyticum H10]
Length = 320
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 24/222 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N I LAPM + +PFR+L + LVY+E + + + K N L
Sbjct: 4 GNVELKNNIFLAPMAGVTDMPFRILCKEQECGLVYTEMVSAKGMHYDDDKSNKL------ 57
Query: 85 VDPLDGSVVFRTCPREKNKI-ILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSL 142
T EK + +QI +DP+ E A+K+ + D A IDINMGCP
Sbjct: 58 -----------TLMHEKERPGAVQIFGSDPKIMAEVAEKLNKSDAAIIDINMGCPAPKIT 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAI 200
G G+AL+ P++ I+ +++S PV+ KIR +++ + I + + E G AI
Sbjct: 107 KNGEGSALMKNPELVAEIIKSVVSASQKPVTVKIRKGWDDSTINAIEIARIAEKNGARAI 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG---GSKE 239
VHGRT+ + + ++IR + + + IPVI NG G KE
Sbjct: 167 AVHGRTREQYYSGKADWDIIRQVKEAVSIPVIGNGDVTGPKE 208
>gi|222054815|ref|YP_002537177.1| nifR3 family TIM-barrel protein [Geobacter daltonii FRC-32]
gi|221564104|gb|ACM20076.1| TIM-barrel protein, nifR3 family [Geobacter daltonii FRC-32]
Length = 326
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 105/213 (49%), Gaps = 18/213 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N +ILAPM + LP R+LA + GA L ++E + + LV+ +K DLL
Sbjct: 8 GSLQLENNLILAPMAGLTNLPMRILARECGAALTFTEMISVNGLVREGKKTFDLLRR--- 64
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
DP+D + +QI DP+ E A+ VE IDINMGCP + +
Sbjct: 65 -DPMD------------RPMGIQIFGDDPQLLAEGARLVEQYGELIDINMGCPVRKVVGS 111
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAIGV 202
G G+ALL P I+ + S+P++ KIR AD + + + EA G+ + +
Sbjct: 112 GAGSALLREPAKVGMIIKAVRKATSLPLTIKIRTGWGAADHTFLEIGRIAEAEGVDGVTL 171
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
H R++A+ IR L + L IPVI +G
Sbjct: 172 HPRSRAQMFEGHADWSRIRELKEALSIPVIGSG 204
>gi|198428499|ref|XP_002130384.1| PREDICTED: similar to dihydrouridine synthase 1-like [Ciona
intestinalis]
Length = 626
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 24/219 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADL----VYSEELVDHKLVKTERKVNDLLNTIDFV 85
S K ++APMV + LP+RLL+ +GA L +YS H + V DL +T
Sbjct: 14 SPKFVVAPMVDQSELPWRLLSRRHGAQLCFSPMYSANTFVHDHTYRNKVVQDLSST---- 69
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGG 145
E + +I+Q + E LEA+K VE +D+N+GCP+ + G
Sbjct: 70 --------------EDHPLIVQFCSNSAENFLEASKLVEGLCEGVDLNLGCPQHIAKRGH 115
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
GA L D+ I++T ++ I V+ KIRVF+ T+ + LE G I VHGR
Sbjct: 116 FGAYLQEDWDLIIEIISTTKQHIGIGVTAKIRVFNEIDKTVKYAQMLETAGCDIITVHGR 175
Query: 206 TKAERPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
T+ ++ + + I+ + ++ IPV ANG + D
Sbjct: 176 TREQKGPNTGLASWDHIKAVKDNVDIPVFANGNIQYYCD 214
>gi|433494942|ref|ZP_20452009.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis NM762]
gi|432229590|gb|ELK85275.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis NM762]
Length = 336
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ DF D
Sbjct: 10 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFAD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQVIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H++ + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHDDHQNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|401765456|ref|YP_006580463.1| tRNA-dihydrouridine synthase B [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400176990|gb|AFP71839.1| tRNA-dihydrouridine synthase B [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 321
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL PD +ILT ++S + +PV+ KIR + + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKSILTAVVSAVDVPVTLKIRTGWSPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|19074582|ref|NP_586088.1| similarity to HYPOTHETICAL PROTEIN YM10_yeast [Encephalitozoon
cuniculi GB-M1]
gi|19069224|emb|CAD25692.1| similarity to HYPOTHETICAL PROTEIN YM10_yeast [Encephalitozoon
cuniculi GB-M1]
Length = 341
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 16/203 (7%)
Query: 35 LAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94
+APMV + +R L+ +GA++ Y+E + ++ R N + N +
Sbjct: 15 VAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSR--NPVKNR------------W 60
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154
T +++QI PE LEAA ++ AID+N GCP++ + GG GA L
Sbjct: 61 YTTSEGDRPLVVQICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENW 120
Query: 155 DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR 214
+ I+ L S L++PV CKIRVF + T+ K +E G + VHGRT+ +R
Sbjct: 121 KLTGEIVKVLSSGLNVPVFCKIRVFGSIEKTVEYAKMIEEAGCSLLAVHGRTRDQRGAAM 180
Query: 215 N--RIEMIRTLTQHLKIPVIANG 235
+ IR + ++L+IPV++NG
Sbjct: 181 GFASWKHIRAIKENLRIPVLSNG 203
>gi|91774082|ref|YP_566774.1| dihydrouridine synthase, DuS [Methanococcoides burtonii DSM 6242]
gi|91713097|gb|ABE53024.1| tRNA-dihydrouridine synthase [Methanococcoides burtonii DSM 6242]
Length = 318
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 28/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ ++LAP+ + L FRL+ YGA L ++E + +V
Sbjct: 4 GRVDLPGNLLLAPLAEVTNLAFRLMCKKYGASLCFTEMISSDAVVYG------------- 50
Query: 85 VDPLDGSVVFR--TCPREKNKIILQIGTADPERALEAAKKVEHDV--AAIDINMGCPKQF 140
+ S R TC E+ LQ+ PE EAA +E IDIN+GCP
Sbjct: 51 ----NASSAMRGITCDEER-PFGLQLFGNSPEVITEAALVLEDMFYPDMIDINLGCPAPV 105
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200
G G+ALL +P++ +I +TL + PV+ KIRV + A T+ + RLE G+ AI
Sbjct: 106 ITNAGCGSALLESPELVSDIFSTLCEGVDTPVTAKIRVLESRAATLDMAHRLEDAGVCAI 165
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGGVFSL 249
VHGRT + + + + L IPVI NG ++++++Y G L
Sbjct: 166 TVHGRTCEQGYSGTADHSYAKLIKEELSIPVIVNGDIRDGVSAEKVLEYTGCDGL 220
>gi|422015675|ref|ZP_16362270.1| tRNA-dihydrouridine synthase B [Providencia burhodogranariea DSM
19968]
gi|414097944|gb|EKT59595.1| tRNA-dihydrouridine synthase B [Providencia burhodogranariea DSM
19968]
Length = 321
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 114/229 (49%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I APM + PFR L D GA + SE L + ++ KT++ +
Sbjct: 10 NCLIAAPMAGITDRPFRSLCYDMGAGMTVSEMLSSNPQVWKTDKSRLRM----------- 58
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
V R P ++ +QI DP+ AA+ VE IDINMGCP + G+
Sbjct: 59 ---VHRDEPGVRS---VQIAGNDPDEMAAAAQINVESGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ +IL+T++ + +PV+ KIR + E + I + K E CGI A+ +HGRT
Sbjct: 113 ALLRYPDLVQSILSTVVKAVDVPVTLKIRTGWSPEERNCIEIAKLAEDCGIQALTIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 173 RACLFNGEAEYVNIRAVKQTVTIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|416187307|ref|ZP_11614177.1| dihydrouridine synthase [Neisseria meningitidis M0579]
gi|325136535|gb|EGC59139.1| dihydrouridine synthase [Neisseria meningitidis M0579]
Length = 336
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ DFVD
Sbjct: 10 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFVD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H + + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHEDHQNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|295110733|emb|CBL24686.1| tRNA-U20-dihydrouridine synthase [Ruminococcus obeum A2-162]
Length = 321
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 23/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N ILAPM + LPFR+L + GA L+ +E +V K + K NTI
Sbjct: 8 GSVEMENPFILAPMAGVTDLPFRMLCKEQGAGLLCTE-MVSAKAISFHNK-----NTISL 61
Query: 85 --VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFS 141
+DP ++ + +QI ++P+ E AK +E I DINMGCP
Sbjct: 62 MQIDP------------SEHPVSMQIFGSEPDLMAEVAKSIEEQPFDILDINMGCPVPKV 109
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIA 199
+ G G+ALL P++ I+T + + PV+ KIR+ + D + + K +E G A
Sbjct: 110 VNNGEGSALLKNPELIREIVTQVSHAVKKPVTAKIRIGFEDYPVDPVEIAKIIEDSGAAA 169
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ VHGRT+ + + IR + + + IPVI NG
Sbjct: 170 VAVHGRTRQQYYAGEADWDTIRRIKEAVSIPVIGNG 205
>gi|188025691|ref|ZP_02959486.2| hypothetical protein PROSTU_01344 [Providencia stuartii ATCC 25827]
gi|188022767|gb|EDU60807.1| tRNA-dihydrouridine synthase B [Providencia stuartii ATCC 25827]
Length = 337
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 113/229 (49%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I APM + PFR L D GA + SE L + ++ KT++ L I +P
Sbjct: 26 NCLIAAPMAGITDRPFRSLCYDMGAGMTVSEMLSSNPQVWKTDKS---RLRMIHRDEPGV 82
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
SV QI DP+ AA+ VE IDINMGCP + G+
Sbjct: 83 RSV--------------QIAGNDPDEMAAAAQINVESGAQIIDINMGCPAKKVNRKLAGS 128
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ +IL+ ++ + +PV+ KIR + E + I + K E CGI A+ +HGRT
Sbjct: 129 ALLRYPDLVKSILSAVVKAVDVPVTLKIRTGWSPEERNCIEIAKLAEDCGIQALTIHGRT 188
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 189 RACLFNGEAEYDNIRAVKQTVAIPVIANGDITDPLKARAVLDYTGADAL 237
>gi|251791404|ref|YP_003006125.1| tRNA-dihydrouridine synthase B [Dickeya zeae Ech1591]
gi|247540025|gb|ACT08646.1| TIM-barrel protein, nifR3 family [Dickeya zeae Ech1591]
Length = 321
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM ++ PFR L GA + SE L + V R L + +P
Sbjct: 10 NRLIAAPMAGVSDRPFRALCYAMGAGMTVSEMLSSNPEVW--RSDKSRLRMVHSDEPGIR 67
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+V QI DP+ EAA+ E+ IDINMGCP + G+A
Sbjct: 68 AV--------------QIAGGDPDEMAEAARINAENGAQVIDINMGCPAKKVNRKMAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL P++ ILT ++ + +PV+ KIR + + + + E CGI A+ VHGRT+
Sbjct: 114 LLQYPELVKQILTAVVKAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IRT+ Q + IPVIANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRTVKQSVSIPVIANGDITDPRKARAVLDYTGADAL 221
>gi|110807120|ref|YP_690640.1| tRNA-dihydrouridine synthase B [Shigella flexneri 5 str. 8401]
gi|384544850|ref|YP_005728914.1| tRNA-dihydrouridine synthase B [Shigella flexneri 2002017]
gi|415857170|ref|ZP_11531944.1| TIM-barrel , nifR3 family protein [Shigella flexneri 2a str. 2457T]
gi|417703870|ref|ZP_12352974.1| TIM-barrel protein, nifR3 family protein [Shigella flexneri K-218]
gi|417724852|ref|ZP_12373648.1| TIM-barrel protein, nifR3 family protein [Shigella flexneri K-304]
gi|417730225|ref|ZP_12378915.1| TIM-barrel protein, nifR3 family protein [Shigella flexneri K-671]
gi|417734805|ref|ZP_12383452.1| TIM-barrel protein, nifR3 family protein [Shigella flexneri
2747-71]
gi|417740133|ref|ZP_12388705.1| TIM-barrel protein, nifR3 family protein [Shigella flexneri
4343-70]
gi|417745177|ref|ZP_12393698.1| tRNA dihydrouridine synthase [Shigella flexneri 2930-71]
gi|424839505|ref|ZP_18264142.1| tRNA-dihydrouridine synthase B [Shigella flexneri 5a str. M90T]
gi|38604763|sp|Q83PZ5.1|DUSB_SHIFL RecName: Full=tRNA-dihydrouridine synthase B
gi|110616668|gb|ABF05335.1| putative dehydrogenase [Shigella flexneri 5 str. 8401]
gi|281602637|gb|ADA75621.1| tRNA-dihydrouridine synthase B [Shigella flexneri 2002017]
gi|313648498|gb|EFS12940.1| TIM-barrel , nifR3 family protein [Shigella flexneri 2a str. 2457T]
gi|332752422|gb|EGJ82812.1| TIM-barrel protein, nifR3 family protein [Shigella flexneri
4343-70]
gi|332752463|gb|EGJ82852.1| TIM-barrel protein, nifR3 family protein [Shigella flexneri K-671]
gi|332754236|gb|EGJ84602.1| TIM-barrel protein, nifR3 family protein [Shigella flexneri
2747-71]
gi|332765259|gb|EGJ95486.1| tRNA dihydrouridine synthase [Shigella flexneri 2930-71]
gi|333000253|gb|EGK19836.1| TIM-barrel protein, nifR3 family protein [Shigella flexneri K-218]
gi|333014546|gb|EGK33893.1| TIM-barrel protein, nifR3 family protein [Shigella flexneri K-304]
gi|383468557|gb|EID63578.1| tRNA-dihydrouridine synthase B [Shigella flexneri 5a str. M90T]
Length = 321
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + P+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSAPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|350566413|ref|ZP_08935086.1| tRNA-dihydrouridine synthase [Peptoniphilus indolicus ATCC 29427]
gi|348662803|gb|EGY79443.1| tRNA-dihydrouridine synthase [Peptoniphilus indolicus ATCC 29427]
Length = 313
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 35 LAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94
LAP+ + FR + GA V +E + +V +RK NDLL
Sbjct: 9 LAPLAGYTDIAFREICSRMGASEVVTEMVSCKGIVYGDRKTNDLL--------------- 53
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+T P EKN +++Q+ +P +AA+ V + D IDINMGCP + G+ALL
Sbjct: 54 KTSPNEKN-VVVQLFGDEPYFMAKAAEIVSKFDFIGIDINMGCPAPKIVKNNSGSALLDQ 112
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
P++ + +++ +PVS KIR E +++ K +EA G I VHGRT+ E
Sbjct: 113 PNLVYEVTRAVVNATDLPVSVKIRKGIRETNSMEAAKEIEAAGAKRITVHGRTREEYYTG 172
Query: 214 RNRIEMIRTLTQHLKIPVIANG 235
+ E I + + +KIPVI NG
Sbjct: 173 VSDWEYISEIAKLVKIPVIGNG 194
>gi|346473567|gb|AEO36628.1| hypothetical protein [Amblyomma maculatum]
Length = 358
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 20/205 (9%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + FR L Y D+ Y+ +V VK+ RK D +F
Sbjct: 53 ICAPMVRYSKQAFRHLVRRYNVDIAYTPMIVSDSFVKS-RKARD----AEF--------- 98
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
T + +I+Q + AA+ V +D+N GCP+++++ G GA LL+
Sbjct: 99 --TTGQGDRPLIVQFAANNAIDLANAAELVYRYADGVDLNCGCPQRWAMAEGYGAHLLAH 156
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ +S+ S S KIR+ + T+ C++LEA G+ + VHGRTK +R
Sbjct: 157 PELVRDMVLQTRNRLSDCSFTTSVKIRICSDLRKTVDFCQQLEATGVSFVTVHGRTKDQR 216
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANG 235
+ IE IRT+ L+IPV+ANG
Sbjct: 217 SEPVS-IEAIRTVKDSLQIPVVANG 240
>gi|428186121|gb|EKX54972.1| hypothetical protein GUITHDRAFT_156831 [Guillardia theta CCMP2712]
Length = 261
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 34/235 (14%)
Query: 26 NINYSNKIILAPMV-RMNTLPF--------RLLALDYGADLVYSEELVDHKLVKTERKVN 76
N+ + + APMV + PF R+L +GA L YSE L ++V+ E +
Sbjct: 2 NLGFPILLCAAPMVVHTGSCPFLADSLVGSRILTRRWGASLAYSEMLFSERIVEEEDYLA 61
Query: 77 DLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-------HDVAA 129
+ L + E +I+QI DP AA +E H V A
Sbjct: 62 EKLQSC----------------MEDRPLIVQICGNDPSIMARAACLIEDFCNNKSHGVDA 105
Query: 130 IDINMGCPKQFSLTGGMGAALLSTPD--IACNILTTLISNLSIPVSCKIRVFHNEADTIA 187
IDIN+GCP++ + G G+ LL D + I+ ++ +++IP+SCKIR+ E+ T+
Sbjct: 106 IDINLGCPQKRAAEGHYGSYLLEKKDWKLVQEIVESMSKSVNIPISCKIRLLQTESQTVE 165
Query: 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
K LEA G + VHGR + + ++ I + + L IPVIANG + D
Sbjct: 166 FAKLLEAAGCSLLAVHGRQRRHGRKGPADLDQIAAVKRALTIPVIANGNVRSPED 220
>gi|331086547|ref|ZP_08335625.1| hypothetical protein HMPREF0987_01928 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410380|gb|EGG89812.1| hypothetical protein HMPREF0987_01928 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 325
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ N ILAPM + LPFRLL + GA L+ E+V K ++ + K NT D
Sbjct: 10 GTVELENPYILAPMAGVTDLPFRLLCKEQGAGLL-CMEMVSAKAIQYKNK-----NTQDL 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT 143
+ E+ + LQ+ ++P+ E AK++E A +DINMGCP +
Sbjct: 64 L----------RIHEEERPVSLQLFGSEPDTISEIAKQIEELPFAILDINMGCPVPKIVK 113
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ P + I++ + + PV+ KIR +++ + + + K +E G A+
Sbjct: 114 NGEGSALMKQPKLVYEIVSKTVKAIQKPVTVKIRKGFDDSCINAVEIAKVIEEAGGAAVA 173
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + E+IR + + + IPVI NG
Sbjct: 174 VHGRTREQYYSGKADWEIIRKVKEAVSIPVIGNG 207
>gi|163803826|ref|ZP_02197676.1| DNA-binding protein Fis [Vibrio sp. AND4]
gi|159172369|gb|EDP57246.1| DNA-binding protein Fis [Vibrio sp. AND4]
Length = 322
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL T + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPKLWGTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI ADP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGADPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAI 200
G+ALL PDI ILT ++ + +PV+ K R N + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPDIIKEILTAVVDAVDVPVTLKTRTGWNTENKNCVHVAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKQAISIPVIANGDIDSPEKAKYVLEYTGADAL 221
>gi|421565742|ref|ZP_16011512.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3081]
gi|402343319|gb|EJU78468.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3081]
Length = 336
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ DF D
Sbjct: 10 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFAD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQVIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H++ + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHDDHQNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|365759171|gb|EHN00977.1| Dus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 423
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 13/177 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ ++ KL T +K + D PLDGS
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTP-MLHAKLFATSKKYRE-----DNWSPLDGSDG 85
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R +++Q DPE L AAK VE A+D+N+GCP+ + G G+ L+
Sbjct: 86 DRP-------LVVQFCANDPEHLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
D+ N+++TL NL + V+ KIR+F + ++ K + G + VHGR + ++
Sbjct: 139 WDLIHNLISTLHKNLKVAVTAKIRIFDDREKSLDYAKMVLDAGAQFLTVHGRVREQK 195
>gi|334125875|ref|ZP_08499860.1| tRNA-dihydrouridine synthase B [Enterobacter hormaechei ATCC 49162]
gi|333386403|gb|EGK57618.1| tRNA-dihydrouridine synthase B [Enterobacter hormaechei ATCC 49162]
Length = 321
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL PD +ILT ++S + +PV+ KIR + + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKSILTAVVSAVDVPVTLKIRTGWSPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|253681232|ref|ZP_04862030.1| tRNA-dihydrouridine synthase B [Clostridium botulinum D str. 1873]
gi|253562470|gb|EES91921.1| tRNA-dihydrouridine synthase B [Clostridium botulinum D str. 1873]
Length = 320
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 29/233 (12%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+N+ N + LAPM + + +R L + G LVY+E + + LL
Sbjct: 4 GNLNFKNNVFLAPMAGVTDIAYRGLCKEMGCGLVYTEMISAKGMYYNNENTKKLL----- 58
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHD--VAAIDINMGCPKQFSL 142
+E+ + QI +DP A + + D V IDINMGCP +
Sbjct: 59 -----------MLSKEEKPVAAQIFGSDPLVMARACEILNEDNGVCIIDINMGCPAPKIV 107
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNE-ADTIALCKRLEACGIIAI 200
G G+AL+ TP++A I+ + PV+ K R F N+ + + KR+E G+ A+
Sbjct: 108 KNGEGSALMKTPELAAKIVMEMKKISKKPVTVKFRKGFDNDNINAVEFAKRMEQAGVDAV 167
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAF 253
+HGRT+A+ + ++IR + + + IPVI N G VFS AF
Sbjct: 168 AIHGRTRAQMYEGKADWDIIRRVKEAVDIPVIGN---------GDVFSAEKAF 211
>gi|241888813|ref|ZP_04776119.1| tRNA-dihydrouridine synthase B [Gemella haemolysans ATCC 10379]
gi|241864489|gb|EER68865.1| tRNA-dihydrouridine synthase B [Gemella haemolysans ATCC 10379]
Length = 335
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 111/213 (52%), Gaps = 20/213 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ N+++LAPM + FRL A ++GA LV +E + D ++ +K ++L ++D
Sbjct: 7 VEIPNRVVLAPMAGVCNAAFRLTAKEFGAGLVCAEMVSDKAILFNNKKTMNML----YID 62
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTG 144
P RE+ + LQI + E +EAAK V+ + A ID+NMGCP
Sbjct: 63 P-----------RER-PLSLQIFGGEIETLVEAAKYVDKNTEADIIDLNMGCPVPKITKV 110
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAIGV 202
G+ LL PD ++ L+ ++S PV+ K+R+ ++ + + E G AI +
Sbjct: 111 DAGSKLLLDPDKVYEVIARLVDSVSKPVTVKMRMGWDDEHIYIMDNARNAERAGASAIAI 170
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
HGRTK + + ++IR + + LKIPVI NG
Sbjct: 171 HGRTKVQMYSGKANWDVIRDVKKELKIPVIGNG 203
>gi|114771140|ref|ZP_01448580.1| tRNA-dihydrouridine synthase, putative [Rhodobacterales bacterium
HTCC2255]
gi|114548422|gb|EAU51308.1| tRNA-dihydrouridine synthase, putative [alpha proteobacterium
HTCC2255]
Length = 324
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 22/216 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S ++L+P+ + LP+R L +GA LV SE + H++++ K D + ++
Sbjct: 8 SPPVLLSPLAGITDLPYRNLVSSFGAGLVVSEMVASHEIMQ---KGKDARARAELGFNVE 64
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLTGGMGA 148
G+ V QI D E AK +E + A I DINMGCP + + G G+
Sbjct: 65 GTSV-------------QIAGRDAFWMSECAKLIEGNGAKIIDINMGCPAKSVVNGASGS 111
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGVHGRT 206
AL+ TPD+A ++ +++ + IPV+ K R+ HN+ + L E GI I +HGRT
Sbjct: 112 ALMRTPDLALKLIEAVVNAVDIPVTLKTRLGWDHNDLNAADLSSSAEKIGIQMITIHGRT 171
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + + IR + + + IPVIANG +I+D
Sbjct: 172 RCQFYKGDADWRKIREVKEAVNIPVIANG---DIID 204
>gi|38604693|sp|O52533.2|DUSB_PROVU RecName: Full=tRNA-dihydrouridine synthase B
gi|3885442|gb|AAC77884.1| yhdG homolog [Proteus vulgaris]
Length = 323
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N +I APM + PFR L D GA + SE +L++ V D
Sbjct: 10 NCLIAAPMAGVTDRPFRSLCYDMGAGMTVSE----------------MLSSNPQVWQTDK 53
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTGGMGA 148
S + E +QI +DP + AA K+ D A IDINMGCP + G+
Sbjct: 54 SRLRMVHSDELGIRSVQIAGSDPVD-MAAAAKINADSGAQIIDINMGCPAKKVNKKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL+ +++ + +PV+ KIR +E + + + K E CGI A+ +HGRT
Sbjct: 113 ALLRHPDLVAEILSAVVNAVDVPVTLKIRTGWSPDERNCVEIAKLAERCGIQALTIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+ + + IRT+ Q++ IP+IANG ++ ++DY G +L
Sbjct: 173 RECLFKGEAEYDSIRTVKQNVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|354725463|ref|ZP_09039678.1| tRNA-dihydrouridine synthase B [Enterobacter mori LMG 25706]
Length = 321
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL PD +ILT ++S + +PV+ KIR + + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKSILTAVVSAVDVPVTLKIRTGWSPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|429966082|gb|ELA48079.1| hypothetical protein VCUG_00502 [Vavraia culicis 'floridensis']
Length = 315
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 25/215 (11%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
++LAPM + L +R L+ YGA+L Y+E + K ++ + K L DF+D
Sbjct: 11 MVLAPMYKNCGLAYRTLSRKYGANLCYTEMVHTQKFLQAKNKKRWL---DDFID------ 61
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
+ +I+QI DP +AA+ A+D+N GCP+ + G GA L +
Sbjct: 62 ---------SPLIVQICGNDPCVMRKAAEHFT-SALAVDVNFGCPQLIAKRGNYGAYLQN 111
Query: 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR 212
+ I+ L S+L PV+CKIR+F ++ TI + +E G + VHGRT+ +R
Sbjct: 112 DWQLTSEIIKRL-SSLERPVTCKIRIFDDDRRTIEYARMIEMSGCKMLAVHGRTREQRGP 170
Query: 213 HRN--RIEMIRTLTQHLKIPVIANGG---SKEIVD 242
+ + I+ + +HL IPVI+NG K+I D
Sbjct: 171 NTGLANWDAIKLVKEHLGIPVISNGNILCRKDITD 205
>gi|402222464|gb|EJU02530.1| Dus-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 450
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 21/214 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL------VDHKLVKTERKVNDLLNTID 83
S K ++APMV + L +R+L+ YGA LVY+ + V H K +KV D+++
Sbjct: 30 SPKFVVAPMVDQSELAWRILSRKYGAQLVYTPMISAKTFAVPHAGDKFRKKVFDMIHG-- 87
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
+G E +I+Q DPE L AA+ VE A+DIN+GCP+ +
Sbjct: 88 ----EEGGA-------EDRPLIVQFCANDPEALLAAAQIVEPFCDAVDINLGCPQDIARK 136
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203
G G+ L D+ +++ L NL IPV+ K RV + T+A + +E G + H
Sbjct: 137 GRYGSFLQDDWDLVYSLINILHENLRIPVTAKFRVLPSVERTVAYAQMMERAGAQILTCH 196
Query: 204 GRTKAERPRHRNRIEM--IRTLTQHLKIPVIANG 235
GRT+ +R + + I + + + +PV ANG
Sbjct: 197 GRTRDQRGHNSGLADWAQIAAVKRAVSVPVFANG 230
>gi|385323933|ref|YP_005878372.1| tRNA-dihydrouridine synthase B [Neisseria meningitidis 8013]
gi|261392320|emb|CAX49847.1| tRNA-dihydrouridine synthase B [Neisseria meningitidis 8013]
Length = 336
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ DF D
Sbjct: 10 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFAD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H++ + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHDDHQNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|380019158|ref|XP_003693481.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Apis florea]
Length = 477
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 23/232 (9%)
Query: 18 DMANANQA-----NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE 72
+AN Q NI S + I+APMV + L +RLL+ +GA L Y+ L +
Sbjct: 11 QLANTTQETNIWKNILGSPQYIVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDP 70
Query: 73 RKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDI 132
+ + L + PL ++Q DP LEAA E A+DI
Sbjct: 71 KYRREALASTAEDRPL----------------VVQFCGNDPSTLLEAALLAEPYCDAVDI 114
Query: 133 NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL 192
N+GCP+ + G GA L D+ I++TL L +PV+CK+RVF T+ + L
Sbjct: 115 NIGCPQAIAKRGHYGAFLQDDWDLLQQIVSTLSKKLHVPVTCKLRVFAEINKTVKYAQML 174
Query: 193 EACGIIAIGVHGRTKAERPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
EA G + VHGRT+ ++ + I+ + Q + IPV ANG + + D
Sbjct: 175 EAAGAQLLTVHGRTREQKGPLTGVASWDHIKAVRQAVTIPVFANGNIQCLQD 226
>gi|224541983|ref|ZP_03682522.1| hypothetical protein CATMIT_01156 [Catenibacterium mitsuokai DSM
15897]
gi|224525040|gb|EEF94145.1| TIM-barrel protein, nifR3 family [Catenibacterium mitsuokai DSM
15897]
Length = 325
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 108/215 (50%), Gaps = 20/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI + II+APM + + +R L ++GA LV SE + D L +K D+L +
Sbjct: 5 GNIEIKHPIIMAPMAGITNVAYRRLVKEFGAGLVVSEMVSDKALCYGNQKTIDMLAVGED 64
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSL 142
P+ +QI + E ++AAK VE D IDINMGCP L
Sbjct: 65 EHPMS----------------MQIFGGEVETMVKAAKFVEEHSDCDIIDINMGCPVNKVL 108
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ L+ P++A +I+ ++ +++PV+ K+R+ ++ + + + + +E G A+
Sbjct: 109 KAHAGSYLMQYPELAYDIVKAVVEAVNVPVTVKMRIGYDMKHINCVEMAQLMEKAGASAV 168
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+++ I+ + + + IPVI NG
Sbjct: 169 AIHGRTRSQMYEGHADWSWIKKVKEAVSIPVIGNG 203
>gi|223982705|ref|ZP_03632935.1| hypothetical protein HOLDEFILI_00209 [Holdemania filiformis DSM
12042]
gi|223965301|gb|EEF69583.1| hypothetical protein HOLDEFILI_00209 [Holdemania filiformis DSM
12042]
Length = 333
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 116/220 (52%), Gaps = 19/220 (8%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
N+ +N +++APM ++ FR +A ++GA L+Y+E + D + + +K ++
Sbjct: 6 NLEIANPVVIAPMAGISNAAFRTIAHEFGAGLIYTEMISDKAICYSNKKTMEMT------ 59
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTG 144
+ P E + I +Q+ + ++AA+ ++ D IDINMGCP +
Sbjct: 60 ---------QLAPDE-HPIAMQLFGHEEASMIQAAQVLDKTDCDVIDINMGCPVPKVVNS 109
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGV 202
G G+A++ P+ ++ +++ + PV+ KIR+ + + + + + + LEA G+ A+ V
Sbjct: 110 GSGSAMMKDPEATYQLVRKIVAVVEKPVTAKIRLGWDSSSINVLEMARGLEAAGVSALAV 169
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
HGRT+++ + I+ + + + IPVI NG + + D
Sbjct: 170 HGRTRSQLYEGKADWSWIKKVKEAVSIPVIGNGDLRSVED 209
>gi|292900840|ref|YP_003540209.1| tRNA-dihydrouridine synthase B [Erwinia amylovora ATCC 49946]
gi|291200688|emb|CBJ47820.1| tRNA-dihydrouridine synthase B [Erwinia amylovora ATCC 49946]
gi|312170828|emb|CBX79088.1| putative dehydrogenase [Erwinia amylovora ATCC BAA-2158]
Length = 321
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 25/234 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N N++I APM + PFR L GA + SE + + V K L +
Sbjct: 4 GNYQLRNRLIAAPMAGITDRPFRTLCYAMGAGMTVSEMMSSNPEVWASDKSR--LRMVHS 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
+P RT +QI DP+ EAA+ IDINMGCP +
Sbjct: 62 DEP-----GVRT---------VQIAGCDPQEMAEAARINAASGAQVIDINMGCPAKKVNR 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIG 201
G+ALL P++ +ILT +++ + +PV+ KIR + + + + + E CGI A+
Sbjct: 108 KMAGSALLQHPELVKSILTAVVNAVDVPVTLKIRTGWDSDNRNCVEIAQLAERCGIQALT 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + IRT+ Q++ IPVIANG ++ ++DY G L
Sbjct: 168 IHGRTRACLFNGEAEYDSIRTVKQNVSIPVIANGDITDPHKARAVLDYTGADGL 221
>gi|400287496|ref|ZP_10789528.1| dihydrouridine synthase TIM-barrel protein nifR3 [Psychrobacter sp.
PAMC 21119]
Length = 345
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 106/216 (49%), Gaps = 19/216 (8%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N + N++I+APM + PFR L +GA SE ++ + +K N
Sbjct: 26 NIGGLTIENRLIVAPMAGVTDNPFRRLCKSFGAGHAVSEMIIADTALYARKKSLYRANFD 85
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFS 141
+ + P+ QI A+P++ +AA+ ++++ IDINMGCP +
Sbjct: 86 NEIAPISA----------------QIAGAEPDKLAQAARYQIDNGAQIIDINMGCPAKKV 129
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTI-ALCKRLEACGIIA 199
G+ALL D+ +L ++ + PV+ K R+ F N + I + KR E GI A
Sbjct: 130 CRKLAGSALLQDEDLVARLLDAAVNAVDAPVTLKTRLGFENGRENILRVAKRAEQAGIAA 189
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
I +HGRT+ + R E+IR + + + IPVIANG
Sbjct: 190 IAIHGRTREDMYTGEARYELIREVKESISIPVIANG 225
>gi|153815945|ref|ZP_01968613.1| hypothetical protein RUMTOR_02190 [Ruminococcus torques ATCC 27756]
gi|317500709|ref|ZP_07958927.1| tRNA-dihydrouridine synthase B [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089816|ref|ZP_08338709.1| hypothetical protein HMPREF1025_02292 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438499|ref|ZP_08618132.1| hypothetical protein HMPREF0990_00526 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145846764|gb|EDK23682.1| TIM-barrel protein, nifR3 family [Ruminococcus torques ATCC 27756]
gi|316897903|gb|EFV19956.1| tRNA-dihydrouridine synthase B [Lachnospiraceae bacterium
8_1_57FAA]
gi|330403513|gb|EGG83071.1| hypothetical protein HMPREF1025_02292 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336019133|gb|EGN48865.1| hypothetical protein HMPREF0990_00526 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 319
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N+ +L PM + LPFRLL + GA L+ E+V K + + K + L I
Sbjct: 7 GNVELENRYLLGPMAGVTDLPFRLLCKEQGAGLL-GMEMVSAKAILYQNKNTEKLMEIH- 64
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
E+ + LQ+ +DP+ E AK++E AI DINMGCP +
Sbjct: 65 --------------PEEQPVSLQLFGSDPKIMSEMAKRIEERPFAILDINMGCPVPKVVK 110
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+AL+ P + I+ ++ + PV+ KIR ++A + + + + E G A+
Sbjct: 111 NGEGSALMKNPSLVYEIVNAIVKAIEKPVTVKIRKGFDDAHVNAVEVARAAEEAGASAVA 170
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + ++IR + + + IPVI NG
Sbjct: 171 VHGRTREQYYSGEADWDIIRQVKEAVSIPVIGNG 204
>gi|378581342|ref|ZP_09829990.1| tRNA-dihydrouridine synthase B [Pantoea stewartii subsp. stewartii
DC283]
gi|377816077|gb|EHT99184.1| tRNA-dihydrouridine synthase B [Pantoea stewartii subsp. stewartii
DC283]
Length = 321
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 25/234 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++I APM + PFR L + GA + SE L + V
Sbjct: 4 GNLQLRNRLIAAPMAGITDRPFRTLCHEMGAGMAVSEMLSSNPEVWAS------------ 51
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
D S + E +QI DP +AA+ V+ IDINMGCP +
Sbjct: 52 ----DKSRLRMVHSDEPGIRAVQIAGCDPSEMAQAARINVDAGAQVIDINMGCPAKKVNR 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G+ALL P + +IL+ +++ + +PV+ KIR + + +A+ + E CGI A+
Sbjct: 108 KMAGSALLQYPTVVESILSAVVNAVDVPVTLKIRTGWDPENRNCVAIAQLAERCGIQALT 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + IRT+ Q + IP+IANG ++ ++DY G +L
Sbjct: 168 IHGRTRACLFNGDAEYDSIRTVKQSVSIPIIANGDITDPHKARAVLDYTGADAL 221
>gi|445417664|ref|ZP_21434724.1| TIM-barrel protein, nifR3 family [Acinetobacter sp. WC-743]
gi|444761288|gb|ELW85700.1| TIM-barrel protein, nifR3 family [Acinetobacter sp. WC-743]
Length = 347
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 25/223 (11%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
I +APM + PFR L +GA SE + + ++ +K L +F DG +
Sbjct: 19 IFVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTSDQTLRMTKKS---LYRANF----DGEL 71
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
I QI ++PE+ EAA+ +V + +DINMGCP + G+ALL
Sbjct: 72 A---------PISAQIAGSEPEQLAEAARYQVSNGAQNVDINMGCPAKKVCNKLAGSALL 122
Query: 152 STPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
D+ IL +++ + +PV+ K R+ + + + + + KR E GI A+ +HGRT+ +
Sbjct: 123 QDEDLVARILDAVVNAVDVPVTLKTRLGYLNGQENILRVAKRAEEAGIAALALHGRTRED 182
Query: 210 RPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ R +I+ + Q + IPVIANG +K ++DY G
Sbjct: 183 MYLNTARYSLIKEVKQLISIPVIANGDIDSPEKAKYVLDYTGA 225
>gi|392570548|gb|EIW63720.1| Dus-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 431
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 10/208 (4%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K I+APMV + L +R L+ YG +VY+ + + RK N D + +
Sbjct: 26 SPKFIVAPMVDQSELAWRKLSRRYGGQVVYTPMINAKMFAEGNRKPYREQN-FDTIHGEE 84
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
G E +I+Q + + L++AK +E A+DIN+GCP+ + G G+
Sbjct: 85 GGP-------EDRPLIVQFCANNAAQLLKSAKLLEAHCDAVDINLGCPQDIARRGRYGSF 137
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L ++ +++TL LSIPV+ K RVF T+ K LE+ G + HGRT+ +
Sbjct: 138 LQDEWELIHEMISTLHRELSIPVTAKFRVFPTVEKTVEYAKMLESAGAQILTCHGRTREQ 197
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANG 235
R + E IR + + + +PVIANG
Sbjct: 198 RGQRSGLADWEKIRAVKEAVSVPVIANG 225
>gi|189485309|ref|YP_001956250.1| putative tRNA-dihydrouridine synthase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287268|dbj|BAG13789.1| putative tRNA-dihydrouridine synthase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 320
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 104/223 (46%), Gaps = 23/223 (10%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
M + NI + N IILAPM + LP R LA GA LVY+ L LV+++ K L
Sbjct: 1 MKKLSLGNIEFDNNIILAPMAGITDLPLRRLAKSGGAGLVYTGMLSARALVRSDEKTEKL 60
Query: 79 LNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVA-AIDINMGCP 137
L T + ++ + QI + EAAK V + A ID+N+GCP
Sbjct: 61 LKTTE----------------DERPVAAQIFGSAAHIMAEAAKIVRNSGADIIDVNLGCP 104
Query: 138 KQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLE 193
+ G GA LL+ + IL +++ ++ +PV+ KIR HN A I K
Sbjct: 105 VKKVAKAGAGAKLLADEKLVSEILESVVKSVDVPVTVKIRTGLLPEHNAATEI--IKVAY 162
Query: 194 ACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236
CGI + VH R ++ +++ KIPVIANGG
Sbjct: 163 NCGIKMVAVHARPASQGHSGFPDLKLFAASCAGAKIPVIANGG 205
>gi|416161193|ref|ZP_11606299.1| dihydrouridine synthase [Neisseria meningitidis N1568]
gi|325128475|gb|EGC51355.1| dihydrouridine synthase [Neisseria meningitidis N1568]
Length = 374
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ DF D
Sbjct: 48 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFAD---- 100
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 101 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 151
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H++ + + ++ E CGI A+ VHGRT+
Sbjct: 152 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHDDHQNLPVIAKIAEDCGIAALAVHGRTR 211
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 212 TQMYKGEARYELIAETKCRLNIPVWVNG 239
>gi|149704573|ref|XP_001491222.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Equus caballus]
gi|335772672|gb|AEH58139.1| tRNA-dihydrouridine synthase 4-like-like protein [Equus caballus]
Length = 317
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 104/207 (50%), Gaps = 24/207 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSV-KARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVQDMVKQVRNQVENPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANG 235
P H E I+ + + IPVIANG
Sbjct: 194 HQPVH---YEAIKIIKDNASIPVIANG 217
>gi|209963474|ref|YP_002296389.1| tRNA-dihydrouridine synthase B [Rhodospirillum centenum SW]
gi|209956940|gb|ACI97576.1| tRNA-dihydrouridine synthase B, putative [Rhodospirillum centenum
SW]
Length = 338
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 19/219 (8%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ + +ILAPM ++ +PFR L GA LV SE + +++ R+
Sbjct: 13 VTIDDPVILAPMSGVSDMPFRRLVKRTGAGLVVSEMIASQAMIRASRE------------ 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVA-AIDINMGCPKQFSLTGG 145
S++ E+ I +Q+ DPE EAA+ E A IDIN GCP + + G
Sbjct: 61 ----SMLKTEWSPEEAPISMQLAGCDPEAMAEAARLNEDRGAHIIDINFGCPVKKVVNGY 116
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVH 203
G+AL+ +A I+ + +S+PV+ K+R + + A L + E CGI + VH
Sbjct: 117 AGSALMKDEPLAGRIMEQTVKAVSVPVTMKMRKGWDAGNLNAPRLARIAEECGIRMVTVH 176
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
GRT+ + + IRT+ + + IPVIANG + D
Sbjct: 177 GRTRCQMYNGTADWKFIRTVKEAVSIPVIANGDINTLAD 215
>gi|384426619|ref|YP_005635976.1| tRNA-dihydrouridine synthase B [Xanthomonas campestris pv. raphani
756C]
gi|341935719|gb|AEL05858.1| tRNA-dihydrouridine synthase B [Xanthomonas campestris pv. raphani
756C]
Length = 332
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 23/211 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG--- 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
E + I +QI +P++ EAA+ V+H IDINMGCP + G+
Sbjct: 63 ----------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHG 204
AL+ D+ IL+ ++ + +PV+ KIR H TI + + CGI A+ VHG
Sbjct: 113 ALMRDEDLVARILSAVVRAVDVPVTLKIRTGWDCDHRNGPTIG--RIAQDCGIAALAVHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+ + I + L+IPVIANG
Sbjct: 171 RTRDQHYTGTAEYATIAQIKAALQIPVIANG 201
>gi|251794118|ref|YP_003008849.1| hypothetical protein Pjdr2_0082 [Paenibacillus sp. JDR-2]
gi|247541744|gb|ACS98762.1| TIM-barrel protein, nifR3 family [Paenibacillus sp. JDR-2]
Length = 338
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+I NK++LAPM + FRL+A ++G LV +E + D ++ ++ ++L F
Sbjct: 5 GDIEMKNKVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAILHGNKRTMEML----F 60
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
VD REK + LQI D E +EAAK V+ A IDINMGCP
Sbjct: 61 VD-----------EREK-PLSLQIFGGDRESLVEAAKVVDQQTNADIIDINMGCPVPKVT 108
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAI 200
GA L P+ +++ + + +S PV+ K+R+ ++ A+ K +E+ G A+
Sbjct: 109 KCDAGARWLLDPNKIYEMVSAVTAAVSKPVTVKMRIGWDDEHIYAVDNAKAVESAGGKAV 168
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ ++ + ++IR + Q + IPVI NG
Sbjct: 169 SVHGRTREQQYTGKANWDIIRDVKQAVSIPVIGNG 203
>gi|237730178|ref|ZP_04560659.1| tRNA-dihydrouridine synthase B [Citrobacter sp. 30_2]
gi|226908784|gb|EEH94702.1| tRNA-dihydrouridine synthase B [Citrobacter sp. 30_2]
Length = 321
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ +ILT +++ + +PV+ KIR + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGDAEYDSIRAVKQKVSIPIIANGDITDPHKARAVLDYTGADAL 221
>gi|331268356|ref|YP_004394848.1| putative TIM-barrel protein, nifR3 family [Clostridium botulinum
BKT015925]
gi|329124906|gb|AEB74851.1| putative TIM-barrel protein, nifR3 family [Clostridium botulinum
BKT015925]
Length = 320
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 107/233 (45%), Gaps = 29/233 (12%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+N+ N + LAPM + + +R L + G LVY+E + + LL
Sbjct: 4 GNLNFENNVFLAPMAGVTDIAYRGLCKEMGCGLVYTEMISAKGMYYNNENTKKLL----- 58
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHD--VAAIDINMGCPKQFSL 142
+E+ + QI +DP A + + D V IDINMGCP +
Sbjct: 59 -----------MLSKEEKPVAAQIFGSDPLVMARACEILNEDNGVCIIDINMGCPAPKIV 107
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEA-DTIALCKRLEACGIIAI 200
G G+AL+ TP++A I+ + PV+ K R F N+ + I KR+E G AI
Sbjct: 108 KNGEGSALMKTPELAAEIVLEMKKISKKPVTVKFRKGFDNDNINAIEFAKRMEQAGADAI 167
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAF 253
+HGRT+A+ + ++IR + + + IPVI N G VFS AF
Sbjct: 168 AIHGRTRAQMYEGKADWDIIRRVKESVNIPVIGN---------GDVFSAEKAF 211
>gi|190408164|gb|EDV11429.1| tRNA dihydrouridine synthase [Saccharomyces cerevisiae RM11-1a]
Length = 423
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 94/177 (53%), Gaps = 13/177 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ ++ KL T +K + D LDGS V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTP-MLHAKLFATSKKYRE-----DNWSSLDGSSV 85
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R +++Q DPE L AAK VE A+D+N+GCP+ + G G+ L+
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
D+ N+ TL NL +PV+ KIR+F + ++ K + G + VHGR + ++
Sbjct: 139 WDLIHNLTNTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQK 195
>gi|168262591|ref|ZP_02684564.1| tRNA-dihydrouridine synthase B [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|205348570|gb|EDZ35201.1| tRNA-dihydrouridine synthase B [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 321
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ +IL +++ + +PV+ KIR + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IRT+ Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRTVKQKVSIPIIANGDITNPHKARAVLDYTGADAL 221
>gi|157148839|ref|YP_001456158.1| tRNA-dihydrouridine synthase B [Citrobacter koseri ATCC BAA-895]
gi|157086044|gb|ABV15722.1| hypothetical protein CKO_04672 [Citrobacter koseri ATCC BAA-895]
Length = 321
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGVRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ +ILT ++S + +PV+ KIR + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKSILTEVVSAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ +++Y G +L
Sbjct: 174 ACLFNGDAEYDSIRAVKQKVSIPIIANGDITDPHKARAVLNYTGADAL 221
>gi|15677280|ref|NP_274433.1| nifR3 protein [Neisseria meningitidis MC58]
gi|385852958|ref|YP_005899472.1| dihydrouridine synthase [Neisseria meningitidis H44/76]
gi|416196280|ref|ZP_11618050.1| dihydrouridine synthase [Neisseria meningitidis CU385]
gi|418288595|ref|ZP_12901062.1| dihydrouridine synthase [Neisseria meningitidis NM233]
gi|421540666|ref|ZP_15986810.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 93004]
gi|421544741|ref|ZP_15990814.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM140]
gi|421546825|ref|ZP_15992869.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM183]
gi|421553039|ref|ZP_15999009.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM576]
gi|421556916|ref|ZP_16002825.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 80179]
gi|427826353|ref|ZP_18993408.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis H44/76]
gi|433465366|ref|ZP_20422847.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis NM422]
gi|433473806|ref|ZP_20431166.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 97021]
gi|433481377|ref|ZP_20438644.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 2006087]
gi|433484354|ref|ZP_20441578.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 2002038]
gi|433486625|ref|ZP_20443818.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 97014]
gi|433488700|ref|ZP_20445860.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis M13255]
gi|433490748|ref|ZP_20447870.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis NM418]
gi|433505295|ref|ZP_20462233.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 9506]
gi|433507423|ref|ZP_20464329.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 9757]
gi|433509592|ref|ZP_20466461.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 12888]
gi|433511626|ref|ZP_20468450.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 4119]
gi|7226660|gb|AAF41782.1| nifR3 protein [Neisseria meningitidis MC58]
gi|316985807|gb|EFV64750.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis H44/76]
gi|325140374|gb|EGC62895.1| dihydrouridine synthase [Neisseria meningitidis CU385]
gi|325199962|gb|ADY95417.1| dihydrouridine synthase [Neisseria meningitidis H44/76]
gi|372201563|gb|EHP15473.1| dihydrouridine synthase [Neisseria meningitidis NM233]
gi|402318561|gb|EJU54080.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 93004]
gi|402322602|gb|EJU58057.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM183]
gi|402322654|gb|EJU58105.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM140]
gi|402329612|gb|EJU64969.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM576]
gi|402335601|gb|EJU70865.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 80179]
gi|432202565|gb|ELK58624.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis NM422]
gi|432209267|gb|ELK65236.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 97021]
gi|432218134|gb|ELK73997.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 2006087]
gi|432220285|gb|ELK76108.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 2002038]
gi|432221265|gb|ELK77077.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 97014]
gi|432222779|gb|ELK78564.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis M13255]
gi|432226932|gb|ELK82650.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis NM418]
gi|432240587|gb|ELK96121.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 9506]
gi|432240697|gb|ELK96230.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 9757]
gi|432246980|gb|ELL02426.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 12888]
gi|432247022|gb|ELL02467.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 4119]
Length = 336
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ DF D
Sbjct: 10 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFAD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H++ + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHDDHQNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|421846365|ref|ZP_16279513.1| tRNA-dihydrouridine synthase B [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411772242|gb|EKS55868.1| tRNA-dihydrouridine synthase B [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|455644593|gb|EMF23686.1| tRNA-dihydrouridine synthase B [Citrobacter freundii GTC 09479]
Length = 321
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ +ILT +++ + +PV+ KIR + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGDAEYDSIRAVKQKVSIPIIANGDITDPHKARAVLDYTGADAL 221
>gi|378773759|ref|YP_005176002.1| tRNA-dihydrouridine synthase B [Pasteurella multocida 36950]
gi|356596307|gb|AET15033.1| tRNA-dihydrouridine synthase B [Pasteurella multocida 36950]
Length = 334
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 25/222 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I LAPM + PFR + YGA L +SE +++T V +
Sbjct: 12 NRIFLAPMAGITDQPFRRICTHYGAGLTFSE----------------MMSTNPQVWHTEK 55
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +E +QI DP+ +A + VE+ IDINMGCP + G+A
Sbjct: 56 SKLRLAHHQEAGINAVQIAGCDPDEMAKAVQINVEYGAEIIDINMGCPAKKVNRKMAGSA 115
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL ++ ++++PV+ KIR ++ + + + K E CGI A+ +HGRT+
Sbjct: 116 LLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTR 175
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDY 243
+ + I+ + + L IP+IANG +K ++DY
Sbjct: 176 SCMFEGEAEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDY 217
>gi|449329553|gb|AGE95824.1| hypothetical protein ECU07_1610 [Encephalitozoon cuniculi]
Length = 341
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 16/203 (7%)
Query: 35 LAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94
+APMV + +R L+ +GA++ Y+E + ++ R N + N +
Sbjct: 15 VAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSR--NPVKNR------------W 60
Query: 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154
T +++QI PE LEAA ++ AID+N GCP++ + GG GA L
Sbjct: 61 YTTSEGDRPLVVQICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENW 120
Query: 155 DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR 214
+ I+ L S L++PV CKIRVF + T+ K +E G + VHGRT+ +R
Sbjct: 121 KLTEEIVKVLSSGLNVPVFCKIRVFGSIEKTVEYAKMIEEAGCSLLAVHGRTRDQRGAAM 180
Query: 215 N--RIEMIRTLTQHLKIPVIANG 235
+ IR + ++L+IPV++NG
Sbjct: 181 GFASWKHIRAIKENLRIPVLSNG 203
>gi|387887674|ref|YP_006317972.1| tRNA-dihydrouridine synthase B [Escherichia blattae DSM 4481]
gi|414594306|ref|ZP_11443945.1| tRNA-dihydrouridine synthase B [Escherichia blattae NBRC 105725]
gi|386922507|gb|AFJ45461.1| tRNA-dihydrouridine synthase B [Escherichia blattae DSM 4481]
gi|403194896|dbj|GAB81597.1| tRNA-dihydrouridine synthase B [Escherichia blattae NBRC 105725]
Length = 321
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 109/230 (47%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPEVWASDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE EAA+ V IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMAEAARINVAAGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL P++ IL+T++S + +PV+ KIR H IAL E CGI A+ +HGR
Sbjct: 114 LLQYPELVEKILSTVVSAVDVPVTLKIRTGWDPEHRNCTEIALLA--ERCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFQGSAEYDSIRAVKQTVSIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|419845416|ref|ZP_14368689.1| putative tRNA-dihydrouridine synthase B [Haemophilus parainfluenzae
HK2019]
gi|386415892|gb|EIJ30412.1| putative tRNA-dihydrouridine synthase B [Haemophilus parainfluenzae
HK2019]
Length = 326
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 25/225 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I+LAPM + PFR L YGA L +SE +++T V +
Sbjct: 10 NRILLAPMAGITDQPFRRLCAHYGAGLTFSE----------------MMSTNPQVWHTEK 53
Query: 91 SVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + E +QI +DP E A AA V + IDINMGCP + G+A
Sbjct: 54 SKLRLAHSEELGLNAVQIAGSDPLEMAQAAAINVAYGAEIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL +++ + +PV+ KIR ++A + + + K E GI A+ +HGRTK
Sbjct: 114 LLQFPDLVEEILKEVVNAVDVPVTLKIRTGWDKANRNCVQIGKIAEQSGIQALTIHGRTK 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ IR + Q + IPVIANG +K++++Y G
Sbjct: 174 ECLFEGEAEYDNIRAVKQSISIPVIANGDIDSASKAKKVLEYTGA 218
>gi|345429473|ref|YP_004822591.1| tRNA-dihydrouridine synthase B [Haemophilus parainfluenzae T3T1]
gi|301155534|emb|CBW15002.1| tRNA-dihydrouridine synthase B [Haemophilus parainfluenzae T3T1]
Length = 326
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 25/225 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I+LAPM + PFR L YGA L +SE +++T V +
Sbjct: 10 NRILLAPMAGITDQPFRRLCAHYGAGLTFSE----------------MMSTNPQVWHTEK 53
Query: 91 SVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + E +QI +DP E A AA V + IDINMGCP + G+A
Sbjct: 54 SKLRLAHSEELGLNAVQIAGSDPLEMAQAAAINVAYGAEIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL +++ + +PV+ KIR ++A + + + K E GI A+ +HGRTK
Sbjct: 114 LLQFPDLVEKILKEVVNAVDVPVTLKIRTGWDKANRNCVQIGKIAEQSGIQALTIHGRTK 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ IR + Q + IPVIANG +K++++Y G
Sbjct: 174 ECLFEGEAEYDNIRAVKQSISIPVIANGDIDSASKAKKVLEYTGA 218
>gi|19112778|ref|NP_595986.1| tRNA dihydrouridine synthase Dus1 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74638589|sp|Q9HGN6.1|DUS1_SCHPO RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 1
gi|9967699|emb|CAC05725.1| tRNA dihydrouridine synthase Dus1 (predicted) [Schizosaccharomyces
pombe]
Length = 399
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 19/197 (9%)
Query: 19 MANANQANINYSNKI-----ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER 73
MA+ ++ NKI ILAPMV + LP+R+LA GADL YS ++E
Sbjct: 1 MASKKLHGRDFYNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESED 60
Query: 74 KVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
N + +T RT P E+ +I+Q DPE L+AAK A+D+N
Sbjct: 61 YRNKVFST-------------RTIPEER-PLIIQFCGNDPEIMLKAAKIAAPYCDAVDVN 106
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLE 193
+GCP+ + G G+ L ++ +I+T L + LSIPV+ KIR+F + T+ K +
Sbjct: 107 LGCPQGIAKKGKYGSFLQENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMIL 166
Query: 194 ACGIIAIGVHGRTKAER 210
G + VHGR + ++
Sbjct: 167 KAGASILAVHGRLREQK 183
>gi|421561397|ref|ZP_16007245.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis NM2657]
gi|402338860|gb|EJU74090.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis NM2657]
Length = 336
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ DF D
Sbjct: 10 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFAD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H++ + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHDDHQNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|335038440|ref|ZP_08531687.1| TIM-barrel protein, nifR3 family [Caldalkalibacillus thermarum
TA2.A1]
gi|334181667|gb|EGL84185.1| TIM-barrel protein, nifR3 family [Caldalkalibacillus thermarum
TA2.A1]
Length = 331
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 125/260 (48%), Gaps = 36/260 (13%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
I N+++LAPM + FRL+A ++GA LVY+E + D L+ + +L +
Sbjct: 8 IKLKNQVVLAPMAGVCNPAFRLIAKEFGAGLVYAEMVSDKALIHGNLRTKKMLYVDERER 67
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTG 144
PL LQI D + +EAAK V+ A IDINMGCP +
Sbjct: 68 PLS----------------LQIFGGDRKTLVEAAKIVDKQTNADIIDINMGCPAPKIIKC 111
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL--EACGIIAIGV 202
GA L P+ ++ ++ + PV+ K+R+ ++ A+ L E G A+ V
Sbjct: 112 NAGAKWLLDPNKIYEMVAAVVDAVEKPVTVKMRIGWDDEHIYAVENALAAERGGAQAVAV 171
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFS--LNCAFL 254
HGRT+A+ + R ++I+ + + +KIPVI NG +K+++D GV + + A L
Sbjct: 172 HGRTRAQMYEGKARWDVIKQVKEAVKIPVIGNGDVDSPQKAKQMLDEIGVDAVMIGRAAL 231
Query: 255 RNHYPVEKLPKTILYAHCKY 274
N + +LY KY
Sbjct: 232 GNPW--------MLYRTVKY 243
>gi|333907458|ref|YP_004481044.1| nifR3 family TIM-barrel protein [Marinomonas posidonica
IVIA-Po-181]
gi|333477464|gb|AEF54125.1| TIM-barrel protein, nifR3 family [Marinomonas posidonica
IVIA-Po-181]
Length = 322
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 106/211 (50%), Gaps = 21/211 (9%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELV-DHKLVKTERKVNDLLNTIDFVDPLDGS 91
+ILAPM + LPFR L D GA LV SE + D +L + + + L++
Sbjct: 14 VILAPMAGVTDLPFRRLCHDQGAGLVVSEMVTSDVRLWNSTKSRHRLVHD---------- 63
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGAAL 150
PR +QI DP+ EAA++ V IDINMGCP + G+AL
Sbjct: 64 --HEVSPRS-----VQIAGGDPQMMAEAARQNVALGAQIIDINMGCPAKKVCNKAAGSAL 116
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRTKA 208
L + IL T+++++S+PV+ KIR + + + + K E GI A+ +HGRT+
Sbjct: 117 LKDESLVREILETVVNSVSVPVTLKIRTGWSQEQKNAMTIAKMAEDIGIQALAIHGRTRE 176
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
+ + + I + Q ++IPV ANG K+
Sbjct: 177 CKFQGSVEYDTIAEVKQAIQIPVFANGDIKD 207
>gi|311277777|ref|YP_003940008.1| nifR3 family TIM-barrel protein [Enterobacter cloacae SCF1]
gi|308746972|gb|ADO46724.1| TIM-barrel protein, nifR3 family [Enterobacter cloacae SCF1]
Length = 321
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 107/228 (46%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE EAA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMAEAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL P + +ILT ++ + +PV+ KIR + + + K E CGI A+ +HGRT+
Sbjct: 114 LLQHPSLVESILTAVVKAVDVPVTLKIRTGWAPEHRNCVEIAKLAEGCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGDAEYDSIRAVKQTVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|374704649|ref|ZP_09711519.1| tRNA-dihydrouridine synthase B [Pseudomonas sp. S9]
Length = 332
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 101/208 (48%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++ILAPM + PFR L GA +V SE + + RK + L I DP
Sbjct: 13 NQLILAPMAGVTDQPFRKLCQRLGAGMVVSEMVTSDVRLWNTRKSS--LRLIHQDDPEPR 70
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGAA 149
SV QI DP+ +AA++ VE IDINMGCP + G+A
Sbjct: 71 SV--------------QIAGGDPQMLADAAQRNVELGAQIIDINMGCPAKKVCNKAAGSA 116
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGVHGRTK 207
LL D+ IL ++ + +PV+ KIR N + + + K E GI+A+ VHGRT+
Sbjct: 117 LLKDQDLVREILHAVVGAVDVPVTLKIRTGWDRNNKNGVEVAKIAEQAGIVALAVHGRTR 176
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
A+ + I + Q + IPV+ANG
Sbjct: 177 ADLYTGDAEYDTIAAIKQAVSIPVLANG 204
>gi|255994138|ref|ZP_05427273.1| tRNA-dihydrouridine synthase [Eubacterium saphenum ATCC 49989]
gi|255993806|gb|EEU03895.1| tRNA-dihydrouridine synthase [Eubacterium saphenum ATCC 49989]
Length = 336
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 22/225 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+I + ++AP+ R +AL++GA LVYSE + L+ ++ +LL+
Sbjct: 9 GDIELPSPFLMAPLAGFTDNAVRTIALEFGAGLVYSEMVSAKGLIYEQKNTEELLD---- 64
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
FR I +QI +DP+ + +E+ AI DINMGCP Q +
Sbjct: 65 ---------FRGA---DGFIAIQIFGSDPDAVAHGIQCIENKGNAIVDINMGCPMQKIVK 112
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIG 201
G GAAL+ PDI +++ + PV+ KIR+ +N + + K +E+ G A+
Sbjct: 113 SGSGAALMKRPDIIYDMVKDAVKITQKPVTAKIRIGWDNNNINAVDCAKAIESAGASAVA 172
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG---GSKEIVDY 243
VHGRT ++ ++I ++ Q + IPVI NG +KE +++
Sbjct: 173 VHGRTAKQKYEGSVNRDVIASVKQSVSIPVIGNGDIKSAKEALEF 217
>gi|164686644|ref|ZP_02210672.1| hypothetical protein CLOBAR_00237 [Clostridium bartlettii DSM
16795]
gi|164604373|gb|EDQ97838.1| TIM-barrel protein, nifR3 family [Clostridium bartlettii DSM 16795]
Length = 322
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 19/223 (8%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N N++ N++ L+PM + LPFRL+ G ++Y+E + L + +
Sbjct: 2 NIGNVSLDNRVFLSPMAGVTDLPFRLICKQKGCGMLYTEMINAKALCYNDENTKKMTKIE 61
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFS 141
D E++ I +QI ++PE AA+ + H +DINMGCP
Sbjct: 62 D----------------EEHPIAIQIFGSEPEYMGRAAEILNSHSNEILDINMGCPAPKV 105
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR--VFHNEADTIALCKRLEACGIIA 199
+ G G+AL+ P +A ++ ++ + + PV+ KIR N + + + K E GI A
Sbjct: 106 IKNGDGSALMKNPKLAEQVMRAVVEHSTKPVTLKIRKGWDDNSVNAVEIAKIAEQAGISA 165
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ +HGRT+ + + ++I+ + + IPVI NG EI D
Sbjct: 166 LAIHGRTREQYYSGKADWDIIKEIKDSISIPVIGNGDVFEIED 208
>gi|416213045|ref|ZP_11622091.1| dihydrouridine synthase [Neisseria meningitidis M01-240013]
gi|325144658|gb|EGC66956.1| dihydrouridine synthase [Neisseria meningitidis M01-240013]
Length = 336
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L ++GA E L ++ RK L+ DFVD
Sbjct: 10 NPIALAPMAGITDKPFRRLCREFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFVD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H++ + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHDDHQNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|401678345|ref|ZP_10810311.1| tRNA-dihydrouridine synthase B [Enterobacter sp. SST3]
gi|400214449|gb|EJO45369.1| tRNA-dihydrouridine synthase B [Enterobacter sp. SST3]
Length = 321
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL PD ILT ++S + +PV+ KIR + + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKAILTAVVSAVDVPVTLKIRTGWSPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|351712773|gb|EHB15692.1| tRNA-dihydrouridine synthase 4-like protein [Heterocephalus glaber]
Length = 317
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 109/212 (51%), Gaps = 24/212 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRRYCCDLCYTPMIVAADFVRSV-KARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARILSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + T+ C++ EA G+ I VHGRT ER
Sbjct: 134 PELVQDMVKQVRNQVENPRFSVSIKIRIHDDLTRTVDFCRKAEATGVNWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
P H + I++I+ +++ IPVIANG + +
Sbjct: 194 HQPVHYDTIKIIK---ENMSIPVIANGDIRSL 222
>gi|114320555|ref|YP_742238.1| nifR3 family TIM-barrel protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114226949|gb|ABI56748.1| tRNA-U20-dihydrouridine synthase [Alkalilimnicola ehrlichii MLHE-1]
Length = 356
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 25/235 (10%)
Query: 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLN 80
N N S +++LAPM + LPFR L +GA L SE L ++ RK
Sbjct: 27 NMNIGPWKLSGRVLLAPMAGITDLPFRQLCRQWGAALAVSEMLSADPTLRKTRKSQ---- 82
Query: 81 TIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQ 139
++ CPR + QI ADP EAA+ V+ IDINMGCP +
Sbjct: 83 -------WRATLADDECPR-----VAQIAGADPVALAEAARYNVQRGAQVIDINMGCPAK 130
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGI 197
G+ALL+ + ILT ++S + +PV+ K R + + +A+ + E G+
Sbjct: 131 KVCNRMAGSALLADEPLVRRILTAVVSAVEVPVTLKYRTGPSPERRNAVAIARMAEDAGV 190
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
A+ +HGRT+ + + + + + + + IPV+ANG +++++D G
Sbjct: 191 AALTLHGRTRVQAYQGQAEYRSVEAVCRAVDIPVVANGDIDSPDKARQVLDETGA 245
>gi|336430497|ref|ZP_08610443.1| hypothetical protein HMPREF0994_06449 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336017829|gb|EGN47584.1| hypothetical protein HMPREF0994_06449 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 324
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 19/220 (8%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
MA N+ N++ LAPM + LPFRLL + G LV SE + + + L
Sbjct: 1 MAKIQIGNVTLENQVFLAPMAGVTDLPFRLLCREMGTGLVCSEMVSAKAIYYKNKNTESL 60
Query: 79 LNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCP 137
L + P+ LQ+ +DPE E AK++E +I DINMGCP
Sbjct: 61 LEIHEKERPVS----------------LQLFGSDPELMAEMAKRIEERPFSILDINMGCP 104
Query: 138 KQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEAC 195
+ G G+AL+ P + I++ + + PV+ KIR +E + + + +
Sbjct: 105 VPKVVNNGEGSALMKNPVLVGKIISAVAGAIKKPVTVKIRKGFDEEHVNAAEIARIAQES 164
Query: 196 GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
G A+ VHGRT+ + ++IR + + L IPVI NG
Sbjct: 165 GAAAVAVHGRTREQYYAGSADWDIIRRVKEALTIPVIGNG 204
>gi|290991278|ref|XP_002678262.1| predicted protein [Naegleria gruberi]
gi|284091874|gb|EFC45518.1| predicted protein [Naegleria gruberi]
Length = 292
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 15/209 (7%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K ++APMV + L FRLLA ++G+ L Y+ V+ E ++ +
Sbjct: 11 SPKHVVAPMVDQSELAFRLLAQNHGSTLAYTPMFHGRIFVQDETYQKTHFQFLE----SE 66
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
G V + C + N I ++ G A E + + +AA+D+N+GCP++ + G G+
Sbjct: 67 GPVFAQFCANDPN-IFVECGWL----AWELSNQ---KIAAVDLNLGCPQRIAKKGRYGSY 118
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L+ D+ C+++ L +PV+ KIR+F + T+ R+ G + VHGRT+ +
Sbjct: 119 LMEDIDLICSMIEKAHKELPVPVTAKIRIFEDAEHTLKYVDRILEAGAQVLCVHGRTRDQ 178
Query: 210 RPRHRNRIE--MIRTLTQHL-KIPVIANG 235
R ++N + MI+ + +H+ IPVIANG
Sbjct: 179 RGHNQNYADWKMIKLIREHVPHIPVIANG 207
>gi|329770278|ref|ZP_08261666.1| tRNA-dihydrouridine synthase 1 [Gemella sanguinis M325]
gi|328836836|gb|EGF86484.1| tRNA-dihydrouridine synthase 1 [Gemella sanguinis M325]
Length = 335
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 20/213 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
I N+++LAPM + FRL A ++GA LV +E + D ++ +K ++L ++D
Sbjct: 7 IEIPNRVVLAPMAGVCNAAFRLTAKEFGAGLVCAEMVSDKAILFNNKKTMNML----YID 62
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTG 144
P RE+ + LQI + + +EAAK V+ + A ID+NMGCP
Sbjct: 63 P-----------RER-PLSLQIFGGEIDTLVEAAKYVDKNTEADIIDLNMGCPVPKITKV 110
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAIGV 202
G+ LL PD +++ ++ ++S PV+ K+R+ ++ + + E G A+ +
Sbjct: 111 DAGSKLLLDPDKVYEVISRIVDSVSKPVTVKMRMGWDDEHIFVMDNARNAERAGASAVAI 170
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
HGRTK + + ++IR + + LKIPVI NG
Sbjct: 171 HGRTKVQMYSGKANWDVIRDVKKELKIPVIGNG 203
>gi|385851001|ref|YP_005897516.1| dihydrouridine synthase [Neisseria meningitidis M04-240196]
gi|416182709|ref|ZP_11612145.1| dihydrouridine synthase [Neisseria meningitidis M13399]
gi|325134359|gb|EGC57004.1| dihydrouridine synthase [Neisseria meningitidis M13399]
gi|325205824|gb|ADZ01277.1| dihydrouridine synthase [Neisseria meningitidis M04-240196]
Length = 374
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L ++GA E L ++ RK L+ DFVD
Sbjct: 48 NPIALAPMAGITDKPFRRLCREFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFVD---- 100
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 101 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 151
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H++ + + ++ E CGI A+ VHGRT+
Sbjct: 152 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHDDHQNLPVIAKIAEDCGIAALAVHGRTR 211
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 212 TQMYKGEARYELIAETKCRLNIPVWVNG 239
>gi|146313333|ref|YP_001178407.1| tRNA-dihydrouridine synthase B [Enterobacter sp. 638]
gi|145320209|gb|ABP62356.1| tRNA-U20-dihydrouridine synthase [Enterobacter sp. 638]
Length = 321
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DPE +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPEEMAQAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL PD +IL +++ + +PV+ KIR + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKSILLGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGNAEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|395232814|ref|ZP_10411063.1| tRNA-dihydrouridine synthase B [Enterobacter sp. Ag1]
gi|394732895|gb|EJF32541.1| tRNA-dihydrouridine synthase B [Enterobacter sp. Ag1]
Length = 321
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 110/228 (48%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPEVWASDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE EAA+ V + IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMAEAARINVANGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRTK 207
LL P + +I+TT++ + +PV+ KIR A + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPSLVKDIVTTVVKAVDVPVTLKIRTGWEPAHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFQGDAEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|329767828|ref|ZP_08259344.1| tRNA-dihydrouridine synthase 1 [Gemella haemolysans M341]
gi|328838929|gb|EGF88523.1| tRNA-dihydrouridine synthase 1 [Gemella haemolysans M341]
Length = 335
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 111/213 (52%), Gaps = 20/213 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
I N+++LAPM + FRL A ++GA LV +E + D ++ +K ++L ++D
Sbjct: 7 IEIPNRVVLAPMAGVCNAAFRLTAKEFGAGLVCAEMVSDKAILFNNKKTMNML----YID 62
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTG 144
P RE+ + LQI + + +EAAK V+ + A ID+NMGCP
Sbjct: 63 P-----------RER-PLSLQIFGGEIDTLVEAAKYVDKNTEADIIDLNMGCPVPKITKV 110
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAIGV 202
G+ LL PD ++ L+ ++S PV+ K+R+ ++ + + E G AI +
Sbjct: 111 DAGSKLLLDPDKVYEVIARLVDSVSKPVTVKMRMGWDDEHIYIMDNARNAERAGASAIAI 170
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
HGRTK + + ++IR + + LKIPVI NG
Sbjct: 171 HGRTKVQMYSGKANWDVIRDVKKELKIPVIGNG 203
>gi|153813030|ref|ZP_01965698.1| hypothetical protein RUMOBE_03438 [Ruminococcus obeum ATCC 29174]
gi|149830832|gb|EDM85922.1| TIM-barrel protein, nifR3 family [Ruminococcus obeum ATCC 29174]
Length = 327
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 23/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N ILAPM + LPFR+L + GA L+ +E +V K + K NTI
Sbjct: 12 GSVEIENPFILAPMAGVTDLPFRILCKEQGAGLLCTE-MVSAKAISFHNK-----NTISL 65
Query: 85 --VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFS 141
+DP++ + + +QI ++P+ E AK +E I DINMGCP
Sbjct: 66 MQIDPVE------------HPVSMQIFGSEPDLMAEVAKSIEEQPFDILDINMGCPVPKV 113
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHN-EADTIALCKRLEACGIIA 199
+ G G+ALL P++ I+T + + PV+ KIR+ F D + + K +E G A
Sbjct: 114 VNNGEGSALLKNPELIREIVTKVSRAVKKPVTAKIRIGFEGYPVDPVEIAKIIEDSGAAA 173
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ VHGRT+ + + IR + + + IPVI NG
Sbjct: 174 VAVHGRTRQQYYAGEADWDTIRRIKEAVSIPVIGNG 209
>gi|408380321|ref|ZP_11177905.1| tRNA-dihydrouridine synthase [Agrobacterium albertimagni AOL15]
gi|407745534|gb|EKF57066.1| tRNA-dihydrouridine synthase [Agrobacterium albertimagni AOL15]
Length = 333
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I+LAPM + LPFR LA +GA LV +E + +LV N + L G
Sbjct: 19 NRIVLAPMSGVTDLPFRQLAFRFGAGLVVTEMVASRELV---------FNAAESWSRLKG 69
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLTGGMGAA 149
+ + P ++Q+ + + EAA E + A I DINMGCP + + G G+A
Sbjct: 70 AGL---TPH-----MVQLAGREAKWLAEAAVIAEANGADIIDINMGCPAKKVIGGYAGSA 121
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVHGRTK 207
L+ PD A +++ + + IPV+ K+R+ +E A + R EA G+ I VHGRT+
Sbjct: 122 LMREPDHALSLIEATVKAVKIPVTVKMRLGWDETSINAPDIAARAEAAGVQLITVHGRTR 181
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + + I + + ++IP+IANG + + D
Sbjct: 182 MQFYEGKANWDAIAAVREAIRIPLIANGDVETVED 216
>gi|315127804|ref|YP_004069807.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas sp. SM9913]
gi|315016318|gb|ADT69656.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas sp. SM9913]
Length = 326
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I+APM + PFR L GA L SE L + K+ KTE+ +N + ++
Sbjct: 13 NNVIVAPMAGITDRPFRQLCRRLGAGLAVSEMLSSNPKVWKTEKSMNRMDHS-------- 64
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G R +QI ADPE +AA+ V + IDINMGCP + G+
Sbjct: 65 GESGIRA---------VQIAGADPELMAQAAQFNVANGAQIIDINMGCPAKKVNKKLAGS 115
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRT 206
ALL P++ I+ +++ + IPV+ KIR ++ + + + + E GI ++ VHGRT
Sbjct: 116 ALLQFPELVEEIIDAVVNAVDIPVTLKIRTGWDQDNRNGVEIARIAERYGIASLAVHGRT 175
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + IR + + + IPV+ANG +K+++DY G ++
Sbjct: 176 RACMYKGDAEYATIRDIKRSVSIPVVANGDITSPEKAKQVLDYTGADAI 224
>gi|85711853|ref|ZP_01042908.1| Predicted tRNA-dihydrouridine synthase [Idiomarina baltica OS145]
gi|85694250|gb|EAQ32193.1| Predicted tRNA-dihydrouridine synthase [Idiomarina baltica OS145]
Length = 320
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 21/209 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +ILAPM + PFR L GA + SE L + K+ +T++ + + ++
Sbjct: 10 NNLILAPMAGVTDQPFRQLCYKLGAGMTVSEMLSSNPKVWQTDKSMQRMDHS-------- 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G + R+ +QI ++PE +AAK V IDINMGCP + G+
Sbjct: 62 GELGIRS---------VQIAGSEPELMAQAAKINVSQGAQIIDINMGCPAKKVNKKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
AL+ P + +ILT ++ + +PV+ K R N + I + + E CGI A+ VHGRT
Sbjct: 113 ALMQHPALVESILTAVVEAVDVPVTLKTRTGWNLDHKNGIEIAQIAERCGIQALAVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+A + IR + + + IPVIANG
Sbjct: 173 RACMYKGEAEYNTIRAIKETISIPVIANG 201
>gi|291547778|emb|CBL20886.1| tRNA-U20-dihydrouridine synthase [Ruminococcus sp. SR1/5]
Length = 324
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 24/217 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N +LAPM + L FR L + GA L+ E +V K + K + L ID
Sbjct: 8 GNVEIPNPFVLAPMAGVTDLAFRRLCKEQGAGLICME-MVSAKAISFHNKNTEALMEID- 65
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH---DVAAIDINMGCPKQFS 141
P E + + +Q+ ++P+ E AK +E D+ +DINMGCP
Sbjct: 66 -------------PGE-HPVSMQLFGSEPDLMAEVAKSIEERPFDI--LDINMGCPVPKV 109
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE---ADTIALCKRLEACGII 198
+ G G+ALL P + I+ ++ +S PV+ K+R+ +E D + + KR+E G
Sbjct: 110 VNNGEGSALLKDPQLIEEIVRSVSGAVSKPVTVKVRIGFDENTPVDVVEIAKRVEDAGAA 169
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
AI VHGRT+ + + + IR + + + IPVI NG
Sbjct: 170 AIAVHGRTRQQYYSGQADWDAIRRVKEAVTIPVIGNG 206
>gi|359439237|ref|ZP_09229214.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas sp. BSi20311]
gi|359445895|ref|ZP_09235609.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas sp. BSi20439]
gi|358026064|dbj|GAA65463.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas sp. BSi20311]
gi|358040298|dbj|GAA71858.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas sp. BSi20439]
Length = 326
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I+APM + PFR L GA L SE L + K+ KTE+ +N + ++
Sbjct: 13 NNVIVAPMAGITDRPFRQLCRRLGAGLAVSEMLSSNPKVWKTEKSMNRMDHS-------- 64
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G R +QI ADPE +AA+ V + IDINMGCP + G+
Sbjct: 65 GESGIRA---------VQIAGADPELMAQAAQFNVANGAQIIDINMGCPAKKVNKKLAGS 115
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRT 206
ALL P++ I+ +++ + IPV+ KIR ++ + + + + E GI ++ VHGRT
Sbjct: 116 ALLQFPELVEEIIDAVVNAVDIPVTLKIRTGWDQDNRNGVEIARIAERYGIASLAVHGRT 175
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + IR + + + IPV+ANG +K+++DY G ++
Sbjct: 176 RACMYKGDAEYATIRDIKRSVSIPVVANGDITSPEKAKQVLDYTGADAI 224
>gi|121535055|ref|ZP_01666872.1| putative TIM-barrel protein, nifR3 family [Thermosinus
carboxydivorans Nor1]
gi|121306305|gb|EAX47230.1| putative TIM-barrel protein, nifR3 family [Thermosinus
carboxydivorans Nor1]
Length = 317
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
I +N +ILAPM + LPFRLLA + G LVYSE + D L+ NT+
Sbjct: 4 GTIELANPVILAPMAGVTDLPFRLLAKEMGCGLVYSEMVSDKGLLYNN------ANTLSL 57
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVA-AIDINMGCPKQFSLT 143
+ R RE+ + +QI ++PE AA+ V A IDINMGCP +
Sbjct: 58 I---------RIDERER-PVAIQIFGSEPESMAAAARIVARAGADIIDINMGCPTPKIVK 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G GAAL+ P++A I+ +++ +PV+ K+R +E+ + + + + E G A+
Sbjct: 108 NGEGAALMRRPELAYRIIASVVEAAEVPVTVKMRKGWDESSINAVEIARLAERAGASAVS 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + +IR + + + IPV NG
Sbjct: 168 VHGRTREQFYAGQADWSIIRAVKEAVTIPVNGNG 201
>gi|91092412|ref|XP_967539.1| PREDICTED: similar to t-diRNAhydrouridine synthase [Tribolium
castaneum]
gi|270004747|gb|EFA01195.1| hypothetical protein TcasGA2_TC010522 [Tribolium castaneum]
Length = 461
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 18/211 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + LP+RLL+ YGA L Y+ L + + N+ L + + PL
Sbjct: 14 IVAPMVDASELPWRLLSRKYGAQLCYTPMLHSAIFARDAKYRNEALASCEIDKPL----- 68
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
I+Q DP+ LEAA + AIDIN+GCP+ + G GA L
Sbjct: 69 -----------IVQFCGNDPKVMLEAALLAQDHCCAIDINLGCPQAIAKRGHYGAFLQDE 117
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
+ I++ L L +P++CK+R F + T+ K L + G + VHGRT+ ++
Sbjct: 118 WPLLHEIVSLLSQRLKVPITCKVRRFESVEKTVDYAKMLVSAGCKMLTVHGRTREQKGPL 177
Query: 214 RNRIEM--IRTLTQHLKIPVIANGGSKEIVD 242
+ ++ + + + IPVI+NG + + D
Sbjct: 178 TGLADWSYVKAVREAVDIPVISNGNIQCMQD 208
>gi|451948385|ref|YP_007468980.1| tRNA-U20-dihydrouridine synthase [Desulfocapsa sulfexigens DSM
10523]
gi|451907733|gb|AGF79327.1| tRNA-U20-dihydrouridine synthase [Desulfocapsa sulfexigens DSM
10523]
Length = 311
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
+ ILAP+ + LPFRLL +YGA LV SE + H L+ ++K +L +
Sbjct: 11 SPFILAPLAGYSDLPFRLLCREYGAGLVVSEMISCHGLIYGQKKTFQMLAS--------- 61
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAA 149
SV R + Q+ +DP +AA + EH + IDINMGCP + G G+A
Sbjct: 62 SVAER-------PVSFQLFGSDPVIMGKAAALLCEHSPSFIDINMGCPVRKVTKKGAGSA 114
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIR--VFHNEADTIALCKRLEACGIIAIGVHGRTK 207
L+ +A I+ +I++ ++PV+ K R + + I K E+ G+ AI VHGRT
Sbjct: 115 LMKDIPLAEKIIQAVIAHSTVPVTVKTRAGIDNGHITAIDFAKMCESSGVAAITVHGRTW 174
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
A+ +IR + + IPVI NG
Sbjct: 175 AQAFSGSADWNIIRQVKDTVSIPVIGNG 202
>gi|261363918|ref|ZP_05976801.1| tRNA-dihydrouridine synthase B [Neisseria mucosa ATCC 25996]
gi|288567925|gb|EFC89485.1| tRNA-dihydrouridine synthase B [Neisseria mucosa ATCC 25996]
Length = 334
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L DF D
Sbjct: 10 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LRRSDFAD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQVIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTI-ALCKRLEACGIIAIGVHGRTK 207
L+ + IL ++ + +PV+ K R+ +H++ + A+ + E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVRAVDVPVTLKTRLGWHDDHKNLPAIARIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + ++I LKIPV NG
Sbjct: 174 TQMYKGEAAYDLIAETKGRLKIPVWVNG 201
>gi|37681322|ref|NP_935931.1| tRNA-dihydrouridine synthase [Vibrio vulnificus YJ016]
gi|326423811|ref|NP_760162.2| tRNA dihydrouridine synthase B [Vibrio vulnificus CMCP6]
gi|38604853|sp|Q8CWL2.2|DUSB_VIBVU RecName: Full=tRNA-dihydrouridine synthase B
gi|37200073|dbj|BAC95902.1| tRNA-dihydrouridine synthase [Vibrio vulnificus YJ016]
gi|319999178|gb|AAO09689.2| tRNA dihydrouridine synthase B [Vibrio vulnificus CMCP6]
Length = 322
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N NK+I+APM + PFR L L YGA + SE + + +L KT + +++
Sbjct: 4 GNYQLKNKLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPQLWKTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAI 200
G+ALL PDI IL ++ + +PV+ K R + + I + K E CGI A+
Sbjct: 107 KKLAGSALLKYPDIIEQILKAVVDAVDVPVTLKTRTGWDTENKNCIHIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKQAVSIPVIANGDIDSPEKAKYVLEYTGADAL 221
>gi|392939061|ref|ZP_10304705.1| putative TIM-barrel protein, nifR3 family [Thermoanaerobacter
siderophilus SR4]
gi|392290811|gb|EIV99254.1| putative TIM-barrel protein, nifR3 family [Thermoanaerobacter
siderophilus SR4]
Length = 321
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 108/214 (50%), Gaps = 20/214 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N + L+PM + PFRL+ + G L Y+E +V K + + +L ID
Sbjct: 4 GDVVLKNNVFLSPMAGVTDKPFRLICQEMGCGLAYTE-MVSAKGLYYGSENTKVLTDID- 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
E+ K+ LQI +DP+ E AK++ A I DINMGCP +
Sbjct: 62 ---------------EEEKVALQIFGSDPDIMGEIAKRLNDSKALILDINMGCPTPKIVK 106
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIR--VFHNEADTIALCKRLEACGIIAIG 201
G GAAL+ P++A ++ +++ + PV+ KIR N + + + + E G+ A+
Sbjct: 107 NGDGAALMLKPELAEKVMESVVKASNKPVTVKIRKGWDDNHVNAVEIAQIAEKVGVKAVA 166
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + +I+ + + +KIPVI NG
Sbjct: 167 VHGRTREQFYSGKADWSIIKKVKESVKIPVIGNG 200
>gi|149240295|ref|XP_001526023.1| tRNA-dihydrouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450146|gb|EDK44402.1| tRNA-dihydrouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 516
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 14/177 (7%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K I+APMV + L +R+L+ YGADL Y+ + +L T+ K + + DGS
Sbjct: 91 KTIVAPMVDHSELAWRILSRRYGADLCYTP-MFHSRLFATDPKYRQSM-----WNEKDGS 144
Query: 92 VVFRTCPREKNK-IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
R+ ++ +I+Q DP+ L+AAK VE+ A+D+N+GCP+ + G GA L
Sbjct: 145 -------RDNDRPLIVQFCANDPDYLLQAAKLVENQCDAVDLNLGCPQGIARRGKYGAFL 197
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK 207
+ ++ ++ TL NLS+PV+ KIRV+ + ++ K + G I +HGRT+
Sbjct: 198 MDDWELVHKLIRTLHDNLSVPVTAKIRVYDDWEKSLEYAKMVLDAGAQFITIHGRTR 254
>gi|421616588|ref|ZP_16057591.1| NifR3 family TIM-barrel protein [Pseudomonas stutzeri KOS6]
gi|409781340|gb|EKN60940.1| NifR3 family TIM-barrel protein [Pseudomonas stutzeri KOS6]
Length = 337
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+N++ILAPM + PFR L +GA LV SE L + RK + D +P
Sbjct: 12 TNRLILAPMAGVTDQPFRQLCRRFGAALVVSEMLTSDVRLWNSRKSRLRIPHADEPEPRS 71
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI DP+ EAA++ VE IDINMGCP + G+
Sbjct: 72 ----------------VQIAGGDPQMLAEAARRNVELGAQIIDINMGCPAKKVCNKAAGS 115
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAIGVHGRT 206
AL+ + IL +I + +PV+ KIR + + +A+ + E GI A+ VHGRT
Sbjct: 116 ALMRDEQLVTQILEAVIGAVDVPVTLKIRTGWDRQNKNGLAVARIAEQSGIAALAVHGRT 175
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+A+ + I + Q + IPV ANG
Sbjct: 176 RADLYTGDAEYDTIAAIKQAVSIPVFANG 204
>gi|388599126|ref|ZP_10157522.1| tRNA-dihydrouridine synthase B [Vibrio campbellii DS40M4]
Length = 322
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 129/276 (46%), Gaps = 46/276 (16%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL T + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWGTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAI 200
G+ALL PDI ILT ++ + +PV+ K R N + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPDIIKEILTAVVDAVDVPVTLKTRTGWNTENKNCVHIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSLNCA-- 252
+HGRTKA + + I+ + Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKQAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRP 226
Query: 253 -------------FLRNHYPVEKLP----KTILYAH 271
+L N +++LP K IL H
Sbjct: 227 AQGRPWIFQEIHHYLENGTTMDELPSEEVKAILLGH 262
>gi|333983186|ref|YP_004512396.1| nifR3 family TIM-barrel protein [Methylomonas methanica MC09]
gi|333807227|gb|AEF99896.1| TIM-barrel protein, nifR3 family [Methylomonas methanica MC09]
Length = 325
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 27/226 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N IILAPM + PFR L +GA L SE ++ + ++ + L D+
Sbjct: 10 NNIILAPMAGITDNPFRRLCSQFGAGLTVSEMVISNSGLQQHPRT---LKKTDYSG---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTGGMGA 148
EK +QI +P++ + AA ++ D A IDINMGCP + + G+
Sbjct: 63 ---------EKGLRSVQILGTEPQQ-MAAAARLNQDRGAQIIDINMGCPAKKVCSVAAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAIGVHGRT 206
ALL + IL ++ + +PV+ KIR + A+ AL K E CGI A+ +HGR+
Sbjct: 113 ALLKDEGLVERILAAVVKAVEVPVTLKIRTGWDLANRNALKIAKIAEGCGIQALTIHGRS 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+A + + + IR + + + IPVIANG +++++DY G
Sbjct: 173 RACKFNGQAEYDTIRQVKRQVNIPVIANGDINNAEKARQVLDYTGA 218
>gi|301100330|ref|XP_002899255.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
gi|262104172|gb|EEY62224.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
Length = 377
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 18/209 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S K I+APMV + L FR+L GAD Y+ +L++ F + +
Sbjct: 23 SPKRIVAPMVDQSELAFRMLCRKLGADCCYTP----------------MLHSRLFAESAE 66
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+ +++Q DP+ L AAK VE A+D+N+GCP+ + G G+
Sbjct: 67 YREKMFEHHIQDRPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGHYGSF 126
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L+ + + TL + L+IPV+ KIRVF ++ +T+ L+ G + VHGRTK
Sbjct: 127 LMHDKETVKATVKTLSAGLNIPVTVKIRVFPDDNETLEFADMLQEAGCDLLTVHGRTKEM 186
Query: 210 RPRHRNRI--EMIRTLTQHLKIPVIANGG 236
+ ++IR + + L IPVIANGG
Sbjct: 187 NKTAVREVNWDIIRRIKERLTIPVIANGG 215
>gi|389605454|emb|CCA44372.1| tRNA-dihydrouridine synthase B [Neisseria meningitidis alpha522]
Length = 374
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ DFVD
Sbjct: 48 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFVD---- 100
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI ++P++ +AA+ V IDINMGCP + G+A
Sbjct: 101 ---------EGGIVAVQIAGSNPQQMADAARYNVSLGAQVIDINMGCPAKKVCNVQAGSA 151
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++S +PV+ K R+ +H++ + + R+ E CGI A+ VHGRT+
Sbjct: 152 LMQDEPLVAAILEAVVSAAGVPVTLKTRLGWHDDHKNLPVVARIAEDCGIAALAVHGRTR 211
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + ++I L IPV NG
Sbjct: 212 TQMYKGEAAYDLIAETKCRLNIPVWVNG 239
>gi|444425736|ref|ZP_21221170.1| tRNA-dihydrouridine synthase B [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444240954|gb|ELU52485.1| tRNA-dihydrouridine synthase B [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 322
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL T + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWGTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAI 200
G+ALL PDI ILT ++ + +PV+ K R N + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPDIIKEILTAVVDAVDVPVTLKTRTGWNTENKNCVHIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKQAISIPVIANGDIDSPEKAKFVLEYTGADAL 221
>gi|384251898|gb|EIE25375.1| FMN-linked oxidoreductase [Coccomyxa subellipsoidea C-169]
Length = 394
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + +APMV + L FR+L +GA Y+ L ++ DP
Sbjct: 24 SPRYFVAPMVDQSELAFRMLCRRHGATAAYTPMLHSRLFLQ---------------DPNY 68
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
+ F TC ++ +++Q DPE L AA+ VE AID+N+GCP++ + G GA
Sbjct: 69 RAEHFSTCEGDR-PLMVQFCANDPETLLAAARIVEPHADAIDLNLGCPQRIARRGRYGAF 127
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L+ + I+ T LS+PV+ KIRVF + T+ + LE G I VHGR + +
Sbjct: 128 LMDDLPLVERIVRTCAEGLSVPVTVKIRVFPDRQKTVEYARMLERAGASLIAVHGRLREQ 187
Query: 210 RPRH--RNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + + I+ + + + +PV+ANG + + D
Sbjct: 188 KKSNGPDADWDAIKAVVEAVGVPVLANGNIRTLAD 222
>gi|392556744|ref|ZP_10303881.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas undina NCIMB
2128]
Length = 323
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I+APM + PFR L GA L SE L + K+ KTE+ +N + ++
Sbjct: 10 NNVIVAPMAGITDRPFRQLCRRLGAGLAVSEMLSSNPKVWKTEKSMNRMDHS-------- 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G R +QI ADPE +AA+ V + IDINMGCP + G+
Sbjct: 62 GESGIRA---------VQIAGADPELMAQAAQFNVANGAQIIDINMGCPAKKVNKKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRT 206
ALL P++ I+ +++ + IPV+ KIR ++ + + + + E GI ++ VHGRT
Sbjct: 113 ALLQFPELVEEIIDAVVNAVDIPVTLKIRTGWDQDNRNGVEIARIAERYGIASLAVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + IR + + + IPV+ANG +K+++DY G ++
Sbjct: 173 RACMYKGDAEYATIRDIKRSVSIPVVANGDITSPEKAKQVLDYTGADAI 221
>gi|433522139|ref|ZP_20478827.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 61103]
gi|432258991|gb|ELL14270.1| TIM-barrel , nifR3 family protein [Neisseria meningitidis 61103]
Length = 336
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L D+GA E L ++ RK L+ FVD
Sbjct: 10 NPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTSDPTLRNTRKT---LHRSGFVD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQVIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H++ + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVKAAGVPVTLKTRLGWHDDHKNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|260893702|ref|YP_003239799.1| nifR3 family TIM-barrel protein [Ammonifex degensii KC4]
gi|260865843|gb|ACX52949.1| TIM-barrel protein, nifR3 family [Ammonifex degensii KC4]
Length = 326
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 20/206 (9%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
I+LAPM + FRL+A + GA L ++E L L ++ LL DF+
Sbjct: 17 IVLAPMAGITDRAFRLVAREGGARLCWTEMLPAPALARSSEARKHLL---DFLG------ 67
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVA-AIDINMGCPKQFSLTGGMGAALL 151
+ ++ Q+ +DPE EAA VE A A+D+NMGCP + + G GAALL
Sbjct: 68 --------EEGVVAQLFGSDPEEMAEAALVVEEAGAVAVDLNMGCPVEKVVKIGAGAALL 119
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVHGRTKAE 209
P A I+ + + +PV+ K+R +E A + + LE G A+ VHGR + E
Sbjct: 120 RDPRQAAAIVEAVCRRVKVPVTVKLRKGWDEKSPPAWEMARLLEEAGAKALIVHGRYRHE 179
Query: 210 RPRHRNRIEMIRTLTQHLKIPVIANG 235
R E IR + + +KIPVI NG
Sbjct: 180 FFGGRADWEAIRRVKEAVKIPVIGNG 205
>gi|322780739|gb|EFZ09996.1| hypothetical protein SINV_07882 [Solenopsis invicta]
Length = 1167
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 104/215 (48%), Gaps = 18/215 (8%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
S + I+APMV + L +RLL+ +GA L Y+ L + + + L + PL
Sbjct: 724 SPRYIVAPMVDASELAWRLLSRRHGAQLCYTPMLHSSVFCRDPKYRREALASTSEDRPL- 782
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149
I+Q DP+ LEAA E AIDIN+GCP+ + G GA
Sbjct: 783 ---------------IVQFCGNDPDILLEAAHLAEPYCDAIDINIGCPQAIAKRGHYGAF 827
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L D+ I++TL + L IPV+CK+RVF T+ LE G + VHGRT+ +
Sbjct: 828 LQDDWDLLKKIVSTLKNGLRIPVTCKLRVFSEIERTVEYACMLEDAGASLLTVHGRTREQ 887
Query: 210 RPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ + I+ + +KIPVIANG + + D
Sbjct: 888 KGPLTGLASWKHIKAVRDAVKIPVIANGNIQCVQD 922
>gi|261342713|ref|ZP_05970571.1| tRNA-dihydrouridine synthase B [Enterobacter cancerogenus ATCC
35316]
gi|288315366|gb|EFC54304.1| tRNA-dihydrouridine synthase B [Enterobacter cancerogenus ATCC
35316]
Length = 321
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
LL PD ILT ++S + +PV+ KIR + + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKAILTAVVSAVDVPVTLKIRTGWSPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGYAEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|421567840|ref|ZP_16013573.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3001]
gi|402343275|gb|EJU78426.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3001]
Length = 336
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L ++GA E L ++ RK L+ DFVD
Sbjct: 10 NPIALAPMAGITDKPFRRLCREFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFVD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H + + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVCAAGVPVTLKTRLGWHEDHQNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|392538024|ref|ZP_10285161.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas marina mano4]
Length = 323
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I+APM + PFR L GA L SE L + K+ KTE+ +N + ++
Sbjct: 10 NNVIVAPMAGITDRPFRQLCRRLGAGLAVSEMLSSNPKVWKTEKSMNRMDHS-------- 61
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G R +QI ADPE +AA+ V + IDINMGCP + G+
Sbjct: 62 GESGIRA---------VQIAGADPELMAQAAQFNVANGAQIIDINMGCPAKKVNKKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL P++ I+ +++ + IPV+ KIR + + + + + E GI ++ VHGRT
Sbjct: 113 ALLQFPELVEEIIDAVVNAVDIPVTLKIRTGWDPDNRNGVEIARIAERYGIASLAVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + IR + + + IPV+ANG +K+++DY G ++
Sbjct: 173 RACMYKGEAEYATIRDIKRSVSIPVVANGDITSPEKAKQVLDYTGADAI 221
>gi|348508270|ref|XP_003441677.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Oreochromis
niloticus]
Length = 315
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 24/214 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + L FR L Y D+ ++ +V D L +I D
Sbjct: 22 ICAPMVRYSKLAFRSLVRKYNCDICFTPMIV----------AADFLRSIKARDS-----E 66
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
F T R++ +I+Q D + +AA V +D+N GCP++++++ G GA L++
Sbjct: 67 FTTNERDR-PLIVQFAAHDAQSLADAACAVAPFSDGVDLNCGCPQRWAMSAGYGACLINK 125
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N + S KIR+ + T+ LC++ E+ G+ I VHGRT ER
Sbjct: 126 PELVKDMVRHVRNQVDNPNYTASIKIRIHKDLKQTVDLCQKAESAGVSWITVHGRTTEER 185
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
P H + I+T+ + +PVIANG K + D
Sbjct: 186 HQPVH---YDAIKTIKDSVSVPVIANGDIKYLRD 216
>gi|271498831|ref|YP_003331856.1| nifR3 family TIM-barrel protein [Dickeya dadantii Ech586]
gi|270342386|gb|ACZ75151.1| TIM-barrel protein, nifR3 family [Dickeya dadantii Ech586]
Length = 321
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM ++ PFR L GA + SE L + V K + D
Sbjct: 10 NRLIAAPMAGVSDRPFRALCYAMGAGMTVSEMLSSNPEVWRSDKSRLRMVHSD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI DP+ +AA+ E IDINMGCP + G+A
Sbjct: 63 ---------EPGIRAVQIAGGDPDEMAQAARINAESGAQIIDINMGCPAKKVNRKMAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL P + ILT +++ + +PV+ KIR + + + K E CGI A+ VHGRT+
Sbjct: 114 LLQYPALVKQILTAVVNAVDVPVTLKIRTGWAPEHRNCVEIAKLAEDCGIQALTVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IRT+ Q + IPVIANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRTVKQSVSIPVIANGDITDPRKARAVLDYSGADAL 221
>gi|365847551|ref|ZP_09388036.1| tRNA-dihydrouridine synthase B [Yokenella regensburgei ATCC 43003]
gi|364572053|gb|EHM49617.1| tRNA-dihydrouridine synthase B [Yokenella regensburgei ATCC 43003]
Length = 321
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 29/236 (12%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 4 GHLQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID- 62
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
E +QI + PE EAA+ VE IDINMGCP +
Sbjct: 63 ---------------EPGIRTVQIAGSVPEEMAEAARINVESGAQIIDINMGCPAKKVNR 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIA 199
G+ALL P++ +ILT +++ + +PV+ KIR H + IA + E CGI A
Sbjct: 108 KLAGSALLQHPELVKSILTAVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQA 165
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+ +HGRT+A IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 166 LTIHGRTRACLFNGDAEYNSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|293571080|ref|ZP_06682121.1| tRNA-dihydrouridine synthase B [Enterococcus faecium E980]
gi|430842711|ref|ZP_19460623.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1007]
gi|431084345|ref|ZP_19496015.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1604]
gi|431600911|ref|ZP_19522396.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1861]
gi|431739290|ref|ZP_19528227.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1972]
gi|431742246|ref|ZP_19531141.1| tRNA-dihydrouridine synthase [Enterococcus faecium E2039]
gi|291608863|gb|EFF38144.1| tRNA-dihydrouridine synthase B [Enterococcus faecium E980]
gi|430492935|gb|ELA69276.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1007]
gi|430564889|gb|ELB04066.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1604]
gi|430590068|gb|ELB28153.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1861]
gi|430596120|gb|ELB33971.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1972]
gi|430600402|gb|ELB38051.1| tRNA-dihydrouridine synthase [Enterococcus faecium E2039]
Length = 334
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 26/231 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++++APM + FR+ ++GA LV E + D + +K ++L+ +
Sbjct: 8 GNVEIPNRVVVAPMAGITNSAFRVTVKEFGAGLVVCEMISDQGIHFRNKKTLEMLHIEET 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
PL LQI + + +EAA+ VE + AA IDINMGCP +
Sbjct: 68 EHPLS----------------LQIFGGNKDSLVEAAQFVEENTAADIIDINMGCPVNKVI 111
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL--EACGIIAI 200
GA L P+ ++ + S + IPV+ K+R+ +E A+ L ++ G AI
Sbjct: 112 KAEAGAKWLLDPEKVYEMVQAVSSAVDIPVTVKMRIGWDEEHVFAVENALAAQSAGASAI 171
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
+HGRT+ + + E+++ + +HL IP + NG +K ++DY G
Sbjct: 172 AMHGRTRVQMYEGKADWEILKEVKKHLTIPFMGNGDVKTPEDAKRMLDYVG 222
>gi|93005906|ref|YP_580343.1| dihydrouridine synthase TIM-barrel protein nifR3 [Psychrobacter
cryohalolentis K5]
gi|92393584|gb|ABE74859.1| tRNA-U20-dihydrouridine synthase [Psychrobacter cryohalolentis K5]
Length = 343
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ N++I+APM + PFR L +GA SE ++ + +K N +
Sbjct: 26 GGLTIENRLIVAPMAGVTDNPFRRLCKSFGAGHAVSEMIIADTALYARKKSLYRANFDNE 85
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
+ P+ QI A+P++ EAA+ ++++ IDINMGCP +
Sbjct: 86 IAPISA----------------QIAGAEPDKLAEAARYQIDNGAQIIDINMGCPAKKVCR 129
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G+ALL D+ +L ++ + PV+ K R+ + + + + KR E GI AI
Sbjct: 130 KLAGSALLQDEDLVARLLDAAVNAVDAPVTLKTRLGYENGRENILRVAKRAEQAGIAAIA 189
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+ + R E+IR + + + IPVIANG
Sbjct: 190 IHGRTREDMYTGEARYELIREVKESISIPVIANG 223
>gi|88608299|ref|YP_506262.1| putative tRNA-dihydrouridine synthase [Neorickettsia sennetsu str.
Miyayama]
gi|88600468|gb|ABD45936.1| putative tRNA-dihydrouridine synthase [Neorickettsia sennetsu str.
Miyayama]
Length = 331
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 115/230 (50%), Gaps = 26/230 (11%)
Query: 17 LDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN 76
L++AN NI+ N +ILAPM + +P+R L +GA LV SE + ++ K
Sbjct: 3 LNLAN----NISIDN-VILAPMSGVTDMPYRDLVKSFGAGLVVSEMIASRAMI---LKTK 54
Query: 77 DLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINM 134
D + + PRE + +Q+ +P+ EAAK + D+ A IDIN
Sbjct: 55 DTMKKVSL------------SPRE-DITAIQLAGFEPDVMAEAAK-INEDMGAKIIDINF 100
Query: 135 GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRL 192
GCP + + G G+ L+ A IL + + IPV+ K+R +E A L K
Sbjct: 101 GCPVKKVVNGYAGSYLMKDECHAAKILEATVKAVKIPVTLKMRTGWDENHRNAPKLAKIA 160
Query: 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
E GI I +HGRT+A+ + ++ + IRT+ +KIPVIANG K D
Sbjct: 161 EDLGIKMITIHGRTRAQMYKGKSDWQFIRTVKNTVKIPVIANGDIKTYED 210
>gi|374618921|ref|ZP_09691455.1| tRNA-U20-dihydrouridine synthase [gamma proteobacterium HIMB55]
gi|374302148|gb|EHQ56332.1| tRNA-U20-dihydrouridine synthase [gamma proteobacterium HIMB55]
Length = 345
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 21/207 (10%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELV-DHKLVKTERKVNDLLNTIDFVDPLDGS 91
++LAPM + LP R LA+ +GAD+ E + D LV + + + +++
Sbjct: 12 VMLAPMAGVTDLPMRQLAVKHGADIAVGEMMSSDLSLVHSRKSQSRAIHS---------- 61
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAAL 150
R+ ++Q+ DPE +AA+ VE IDINMGCP + G+AL
Sbjct: 62 -------RDAGLRLVQLVGNDPEAIAKAAQFNVERGAEVIDINMGCPAKKVCKKAAGSAL 114
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIR--VFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
L+ + +IL + + +S+PV+ KIR V + + + + + + CGI + VHGRT+A
Sbjct: 115 LADTQLVTDILKSTVHAVSVPVTLKIRTGVDRSNRNGVEIAEIAQDCGITMLTVHGRTRA 174
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANG 235
++ E +R + + + IPVIANG
Sbjct: 175 DKFNGEAEYETLRNIVKAVDIPVIANG 201
>gi|304387247|ref|ZP_07369443.1| tRNA-dihydrouridine synthase B [Neisseria meningitidis ATCC 13091]
gi|304338714|gb|EFM04828.1| tRNA-dihydrouridine synthase B [Neisseria meningitidis ATCC 13091]
Length = 336
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L ++GA E L ++ RK L+ DFVD
Sbjct: 10 NPIALAPMAGITDKPFRRLCREFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFVD---- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 63 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H + + + ++ E CGI A+ VHGRT+
Sbjct: 114 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHEDHQNLPVIAKIAEDCGIAALAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 174 TQMYKGEARYELIAETKCRLNIPVWVNG 201
>gi|213403071|ref|XP_002172308.1| tRNA-dihydrouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|212000355|gb|EEB06015.1| tRNA-dihydrouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 347
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 106/205 (51%), Gaps = 19/205 (9%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
I APMVR + LPFR L DY AD+VY+ ++ + + E + D
Sbjct: 22 FIAAPMVRYSKLPFRQLVRDYNADIVYTPMILAKEFLHPEGRYFD--------------- 66
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
F T ++++ +++Q G DP +A++ V AI IN GCP+ +++ G+G+ALL
Sbjct: 67 -FSTNEKDRS-LVVQFGVEDPVILAQASEIVAPYTDAIGINCGCPQPWAIQEGIGSALLK 124
Query: 153 TPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P ++ ++ S L + V KIR+ ++ T L + E G I VHGR +A+R
Sbjct: 125 QPQKVHELVRSVKSALGETFCVEVKIRLDNDLEKTRQLMQTAERAGADFITVHGRRRADR 184
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANG 235
+E IR++ + IPV+ANG
Sbjct: 185 SSFPVDLEAIRSVRPCVSIPVVANG 209
>gi|425055297|ref|ZP_18458778.1| TIM-barrel protein, nifR3 family [Enterococcus faecium 505]
gi|403034239|gb|EJY45703.1| TIM-barrel protein, nifR3 family [Enterococcus faecium 505]
Length = 334
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 26/231 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++++APM + FR+ ++GA LV E + D + +K ++L+ +
Sbjct: 8 GNVEIPNRVVVAPMAGITNSAFRVTVKEFGAGLVVCEMISDQGIHFRNKKTLEMLHIEET 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
PL LQI + + +EAA+ VE + AA IDINMGCP +
Sbjct: 68 EHPLS----------------LQIFGGNKDSLVEAAQFVEENTAADIIDINMGCPVNKVI 111
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL--EACGIIAI 200
GA L P+ ++ + S + IPV+ K+R+ +E A+ L ++ G AI
Sbjct: 112 KAEAGAKWLLDPEKVYEMVQAVSSAVDIPVTVKMRIGWDEEHVFAVENALAAQSAGASAI 171
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
+HGRT+ + + E+++ + +HL IP + NG +K ++DY G
Sbjct: 172 AMHGRTRVQMYEGKADWEILKEVKKHLTIPFMGNGDVKTPEDAKRMLDYVG 222
>gi|161870286|ref|YP_001599456.1| tRNA-dihydrouridine synthase B [Neisseria meningitidis 053442]
gi|161595839|gb|ABX73499.1| tRNA-dihydrouridine synthase B [Neisseria meningitidis 053442]
Length = 374
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L ++GA E L ++ RK L+ DFVD
Sbjct: 48 NPIALAPMAGITDKPFRRLCREFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFVD---- 100
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 101 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 151
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H + + + ++ E CGI A+ VHGRT+
Sbjct: 152 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHEDHQNLPVIAKIAEDCGIAALAVHGRTR 211
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 212 TQMYKGEARYELIAETKCRLNIPVWVNG 239
>gi|254672934|emb|CBA07315.1| tRNA-dihydrouridine synthase B [Neisseria meningitidis alpha275]
Length = 374
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N I LAPM + PFR L ++GA E L ++ RK L+ DFVD
Sbjct: 48 NPIALAPMAGITDKPFRRLCREFGAGWAVCEMLTSDPTLRNTRKT---LHRSDFVD---- 100
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E + +QI +DP++ +AA+ V IDINMGCP + G+A
Sbjct: 101 ---------EGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPAKKVCNVQAGSA 151
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRL-EACGIIAIGVHGRTK 207
L+ + IL ++ +PV+ K R+ +H + + + ++ E CGI A+ VHGRT+
Sbjct: 152 LMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHEDHQNLPVIAKIAEDCGIAALAVHGRTR 211
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + R E+I L IPV NG
Sbjct: 212 TQMYKGEARYELIAETKCRLNIPVWVNG 239
>gi|359449141|ref|ZP_09238640.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas sp. BSi20480]
gi|358045052|dbj|GAA74889.1| tRNA-dihydrouridine synthase B [Pseudoalteromonas sp. BSi20480]
Length = 326
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I+APM + PFR L GA L SE L + K+ KTE+ +N + ++
Sbjct: 13 NNVIVAPMAGITDRPFRQLCRRLGAGLAVSEMLSSNPKVWKTEKSMNRMDHS-------- 64
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
G R +QI ADPE +AA+ V + IDINMGCP + G+
Sbjct: 65 GESGIRA---------VQIAGADPELMAQAAQFNVANGAQIIDINMGCPAKKVNKKLAGS 115
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRT 206
ALL P++ I+ +++ + IPV+ KIR + + + + + E GI ++ VHGRT
Sbjct: 116 ALLQFPELVEEIIDAVVNAVDIPVTLKIRTGWDPDNRNGVEIARIAERYGIASLAVHGRT 175
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + IR + + + IPV+ANG +K+++DY G ++
Sbjct: 176 RACMYKGEAEYATIRDIKRSVSIPVVANGDITSPEKAKQVLDYTGADAI 224
>gi|227552661|ref|ZP_03982710.1| tRNA-dihydrouridine synthase [Enterococcus faecium TX1330]
gi|257888629|ref|ZP_05668282.1| dihydrouridine synthase [Enterococcus faecium 1,141,733]
gi|257897416|ref|ZP_05677069.1| dihydrouridine synthase [Enterococcus faecium Com12]
gi|293378826|ref|ZP_06624981.1| TIM-barrel protein, nifR3 family [Enterococcus faecium PC4.1]
gi|424762101|ref|ZP_18189627.1| TIM-barrel protein, nifR3 family [Enterococcus faecalis TX1337RF]
gi|431043726|ref|ZP_19493016.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1590]
gi|431753382|ref|ZP_19542056.1| tRNA-dihydrouridine synthase [Enterococcus faecium E2620]
gi|431758734|ref|ZP_19547359.1| tRNA-dihydrouridine synthase [Enterococcus faecium E3083]
gi|431763498|ref|ZP_19552048.1| tRNA-dihydrouridine synthase [Enterococcus faecium E3548]
gi|227178190|gb|EEI59162.1| tRNA-dihydrouridine synthase [Enterococcus faecium TX1330]
gi|257824683|gb|EEV51615.1| dihydrouridine synthase [Enterococcus faecium 1,141,733]
gi|257833981|gb|EEV60402.1| dihydrouridine synthase [Enterococcus faecium Com12]
gi|292642367|gb|EFF60522.1| TIM-barrel protein, nifR3 family [Enterococcus faecium PC4.1]
gi|402425829|gb|EJV57974.1| TIM-barrel protein, nifR3 family [Enterococcus faecium TX1337RF]
gi|430561314|gb|ELB00584.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1590]
gi|430612289|gb|ELB49340.1| tRNA-dihydrouridine synthase [Enterococcus faecium E2620]
gi|430617102|gb|ELB53988.1| tRNA-dihydrouridine synthase [Enterococcus faecium E3083]
gi|430622271|gb|ELB59008.1| tRNA-dihydrouridine synthase [Enterococcus faecium E3548]
Length = 334
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 26/231 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++++APM + FR+ ++GA LV E + D + +K ++L+ +
Sbjct: 8 GNVEIPNRVVVAPMAGITNSAFRVTVKEFGAGLVVCEMISDQGIHFRNKKTLEMLHIEET 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
PL LQI + + +EAA+ VE + AA IDINMGCP +
Sbjct: 68 EHPLS----------------LQIFGGNKDSLVEAAQFVEENTAADIIDINMGCPVNKVI 111
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL--EACGIIAI 200
GA L P+ ++ + S + IPV+ K+R+ +E A+ L ++ G AI
Sbjct: 112 KAEAGAKWLLDPEKVYEMVQAVSSAVDIPVTVKMRIGWDEEHVFAVENALAAQSAGASAI 171
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
+HGRT+ + + E+++ + +HL IP + NG +K ++DY G
Sbjct: 172 AMHGRTRVQMYEGKADWEILKEVKKHLTIPFMGNGDVKTPEDAKRMLDYVG 222
>gi|345301088|ref|YP_004830446.1| nifR3 family TIM-barrel protein [Enterobacter asburiae LF7a]
gi|345095025|gb|AEN66661.1| TIM-barrel protein, nifR3 family [Enterobacter asburiae LF7a]
Length = 321
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + PE +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPEEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL PD +IL ++S + +PV+ KIR + + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKSILEAVVSAVDVPVTLKIRTGWSPDHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADAL 221
>gi|373107723|ref|ZP_09522015.1| nifR3 family putative TIM-barrel protein [Stomatobaculum longum]
gi|371650308|gb|EHO15768.1| nifR3 family putative TIM-barrel protein [Stomatobaculum longum]
Length = 332
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 20/209 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N ++LAPM ++ LPFRLL + GA+L +E + L + +LL + + PL
Sbjct: 10 NGLMLAPMAGVSDLPFRLLCREQGAELAVTEMVSAKALHYKNKATEELLKSCEGDRPL-- 67
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGA 148
+Q+ ++PE EAA+ + A ID NMGCP + G G+
Sbjct: 68 --------------AVQLFGSEPEICAEAAEALSERSAFALIDFNMGCPMPKIVNNGDGS 113
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVHGRT 206
L++ P++A I+ + PV K+R E + A L KRLEA G + VHGRT
Sbjct: 114 KLMTKPELAAEIIAAMAKKSKKPVCVKMRAGFTEEEKNAPELAKRLEAAGAAMLTVHGRT 173
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ + ++IR + + + IPVI NG
Sbjct: 174 REQYYAGTADWDIIRQVKEAVSIPVIGNG 202
>gi|302672113|ref|YP_003832073.1| tRNA dihydrouridine synthase A DusA2 [Butyrivibrio proteoclasticus
B316]
gi|302396586|gb|ADL35491.1| tRNA dihydrouridine synthase A DusA2 [Butyrivibrio proteoclasticus
B316]
Length = 325
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 26/223 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N IIL PM ++ LPFRLL + GA LV E+V K + + K ++L I
Sbjct: 10 GNVTLDNNIILGPMAGVSDLPFRLLCREMGAGLV-CMEMVSAKAITYKNKNTNMLMEIH- 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPE---RALEAAKKVEHDVAAIDINMGCPKQFS 141
+++ + LQ+ ++PE +A+E K +D+ +D+NMGCP
Sbjct: 68 --------------EDEHPVSLQLFGSEPEIMQQAVEMIKDRPYDI--LDVNMGCPVPKV 111
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEA--CGIIA 199
+ G G+AL+ P++ I+ L PV+ KIR EA A+ L A G A
Sbjct: 112 VGNGEGSALMKNPELIEKIVKALTEVSDRPVTVKIRRGFTEASVNAVECALAAQEGGAAA 171
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
+ VHGRT+ + R +IR + + LKIPVI NG ++VD
Sbjct: 172 VAVHGRTREQYYSGRADWTIIRQVKEALKIPVIGNG---DVVD 211
>gi|254468654|ref|ZP_05082060.1| tRNA-dihydrouridine synthase B [beta proteobacterium KB13]
gi|207087464|gb|EDZ64747.1| tRNA-dihydrouridine synthase B [beta proteobacterium KB13]
Length = 336
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV----KTERKVNDLLNTIDFVD 86
N I++APM + PFR L YGA + SE + + L+ KT R+ N
Sbjct: 10 NNIVVAPMAGVTDRPFRQLCKKYGAGMAVSEMVTSNSLLYGSSKTIRRANH--------- 60
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGG 145
DG V I +QI ADP+ EAA+ + IDINMGCP +
Sbjct: 61 --DGEV---------EPISVQIAGADPQMMAEAAQYNADKGAQIIDINMGCPAKKICNVM 109
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVH 203
G+ALL D+ IL ++ IPV+ KIR ++ + I + K E GI A+ +H
Sbjct: 110 AGSALLQHEDLVKRILEAVVKASPIPVTLKIRTGWDKQNKNAITIAKIAENSGIQALAIH 169
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+A E I + +KIPVIANG
Sbjct: 170 GRTRACHYTGDAEYETIAAVKDQIKIPVIANG 201
>gi|210623235|ref|ZP_03293674.1| hypothetical protein CLOHIR_01624 [Clostridium hiranonis DSM 13275]
gi|210153772|gb|EEA84778.1| hypothetical protein CLOHIR_01624 [Clostridium hiranonis DSM 13275]
Length = 322
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 19/209 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
N++ LAPM + L FRL+ +YG+ L+Y+E + L + K +L
Sbjct: 9 ENEVFLAPMAGVTDLAFRLICKEYGSGLLYTEMINAKALCYDDEKTKGMLK--------- 59
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGA 148
E++ + +QI ++PE A + + EH +DINMGCP + G G+
Sbjct: 60 -------IEEEEHPVAVQIFGSEPEFIAGATEILNEHSNEILDINMGCPAPKVVKNGDGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIGVHGRT 206
AL+ TP++A ++ PV+ K R +E + + K EA G AI +HGRT
Sbjct: 113 ALMKTPELAAKVIEAAAKKSKKPVTVKFRKGWDEDSINAVEFAKMAEASGAQAITIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+A+ ++I + +KIPVI NG
Sbjct: 173 RAQYYSGTADWDIIEEIKNAVKIPVIGNG 201
>gi|156972542|ref|YP_001443449.1| tRNA-dihydrouridine synthase B [Vibrio harveyi ATCC BAA-1116]
gi|156524136|gb|ABU69222.1| hypothetical protein VIBHAR_00174 [Vibrio harveyi ATCC BAA-1116]
Length = 331
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL T + +++
Sbjct: 13 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWGTSKSKQRMVH--- 69
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 70 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 115
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PDI ILT ++ + +PV+ K R N + + + K E CGI A+
Sbjct: 116 KKLAGSALLQYPDIIKEILTAVVDAVDVPVTLKTRTGWNTENKNCVHIAKLAEDCGIQAL 175
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + Q + IPVIANG +K +++Y G +L
Sbjct: 176 ALHGRTKACMYKGEAEYDSIKAVKQAISIPVIANGDIDSPEKAKFVLEYTGADAL 230
>gi|392419930|ref|YP_006456534.1| NifR3 family TIM-barrel protein [Pseudomonas stutzeri CCUG 29243]
gi|390982118|gb|AFM32111.1| NifR3 family TIM-barrel protein [Pseudomonas stutzeri CCUG 29243]
Length = 337
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 19/209 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+N++ILAPM + PFR L +GA LV SE L + RK + D +P
Sbjct: 12 TNRLILAPMAGVTDQPFRQLCRRFGAALVVSEMLTSDVRLWNSRKSRLRIPHADEPEPRS 71
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI DP+ EAA++ VE IDINMGCP + G+
Sbjct: 72 ----------------VQIAGGDPQMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGS 115
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAIGVHGRT 206
AL+ + +IL ++ +++PV+ KIR + + + + + E GI A+ VHGRT
Sbjct: 116 ALMRDEKLVADILEAVVGAVTVPVTLKIRTGWDRQNKNGLTVARIAEQSGIAALAVHGRT 175
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+A+ + I + Q + IPV ANG
Sbjct: 176 RADLYTGEAEYDTIAAIKQAVSIPVFANG 204
>gi|433451882|ref|ZP_20412859.1| TIM-barrel , nifR3 family protein [Mycoplasma sp. G5847]
gi|431933613|gb|ELK20180.1| TIM-barrel , nifR3 family protein [Mycoplasma sp. G5847]
Length = 324
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 27/231 (11%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFV 85
+I K++ PM ++ FR+++ +GA LVY+E + +V +K D+LN
Sbjct: 5 DIQIDGKVVQGPMAGVSNEAFRIISKQHGASLVYAEMVSVAGMVHDNKKTLDMLNVNKIE 64
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPK-QFSL 142
P+ +QI + E ++A K +E +V ID+N+GCP + ++
Sbjct: 65 HPMS----------------MQIFGNNVEEFIKATKWIEENVDCDIIDLNLGCPAPKVAI 108
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAI 200
G+ALL TP++ I+ ++ N S PV+ KIR+ N + + + K +E G AI
Sbjct: 109 RSQSGSALLKTPELIYEIVKNVVLNTSKPVTAKIRLGWDKNSVNAVEVAKLIEKAGASAI 168
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
VH RT+++ E I+ + Q + IPVI NG +K+++D G
Sbjct: 169 AVHARTRSDFYTGHADWEKIKEVKQAVNIPVIGNGDVVDAKSAKKMLDETG 219
>gi|153835711|ref|ZP_01988378.1| tRNA-dihydrouridine synthase B [Vibrio harveyi HY01]
gi|148867644|gb|EDL66932.1| tRNA-dihydrouridine synthase B [Vibrio harveyi HY01]
Length = 331
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL T + +++
Sbjct: 13 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWGTSKSKQRMVH--- 69
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 70 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 115
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PDI ILT ++ + +PV+ K R N + + + K E CGI A+
Sbjct: 116 KKLAGSALLQYPDIIKEILTAVVDAVDVPVTLKTRTGWNTENKNCVHIAKLAEDCGIQAL 175
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + Q + IPVIANG +K +++Y G +L
Sbjct: 176 ALHGRTKACMYKGEAEYDSIKAVKQAISIPVIANGDIDSPEKAKFVLEYTGADAL 230
>gi|402833567|ref|ZP_10882180.1| TIM-barrel protein, nifR3 family [Selenomonas sp. CM52]
gi|402280060|gb|EJU28830.1| TIM-barrel protein, nifR3 family [Selenomonas sp. CM52]
Length = 318
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 22/231 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKL-VKTERKVNDLLNTIDFV 85
+++ + LAPM + + +R+L + G LVY+E + + + + ER +
Sbjct: 6 LDFPVPVFLAPMAGVTDMAYRILVHEMGCPLVYTEMVSTNGINYRNERTLK--------- 56
Query: 86 DPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLT 143
+ +T PRE+ + +Q+ +PE AA VE A ID NMGCP +
Sbjct: 57 -------MLQTDPRER-PLAMQLFGNEPEAVARAAAYVESLGVADVIDFNMGCPAPKIVK 108
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIAIG 201
G G+ALL P A IL L +++PV+ KIR + A + + + R EA G+ AI
Sbjct: 109 NGEGSALLLDPVRAERILKALKRAVNLPVTVKIRKGWDAAHVNAVEIAARAEAAGVDAIA 168
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
VHGRT+ + +IR + + + IPVIANG + +VD +F A
Sbjct: 169 VHGRTREQFYSGEADWAIIRAVKERVAIPVIANGDVRSVVDLVRIFEATDA 219
>gi|261206686|ref|ZP_05921384.1| dihydrouridine synthase TIM-barrel protein nifR3 [Enterococcus
faecium TC 6]
gi|289565048|ref|ZP_06445502.1| tRNA-dihydrouridine synthase 1 [Enterococcus faecium D344SRF]
gi|294614891|ref|ZP_06694782.1| tRNA-dihydrouridine synthase B [Enterococcus faecium E1636]
gi|430821501|ref|ZP_19440108.1| tRNA-dihydrouridine synthase [Enterococcus faecium E0045]
gi|430827203|ref|ZP_19445367.1| tRNA-dihydrouridine synthase [Enterococcus faecium E0164]
gi|430830017|ref|ZP_19448086.1| tRNA-dihydrouridine synthase [Enterococcus faecium E0269]
gi|430851344|ref|ZP_19469094.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1185]
gi|430906602|ref|ZP_19485037.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1575]
gi|431216477|ref|ZP_19501228.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1620]
gi|431766068|ref|ZP_19554564.1| tRNA-dihydrouridine synthase [Enterococcus faecium E4215]
gi|260079179|gb|EEW66872.1| dihydrouridine synthase TIM-barrel protein nifR3 [Enterococcus
faecium TC 6]
gi|289163255|gb|EFD11101.1| tRNA-dihydrouridine synthase 1 [Enterococcus faecium D344SRF]
gi|291592177|gb|EFF23795.1| tRNA-dihydrouridine synthase B [Enterococcus faecium E1636]
gi|430438417|gb|ELA48851.1| tRNA-dihydrouridine synthase [Enterococcus faecium E0045]
gi|430444383|gb|ELA54238.1| tRNA-dihydrouridine synthase [Enterococcus faecium E0164]
gi|430479335|gb|ELA56591.1| tRNA-dihydrouridine synthase [Enterococcus faecium E0269]
gi|430534306|gb|ELA74767.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1185]
gi|430554560|gb|ELA94162.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1575]
gi|430569842|gb|ELB08822.1| tRNA-dihydrouridine synthase [Enterococcus faecium E1620]
gi|430627138|gb|ELB63655.1| tRNA-dihydrouridine synthase [Enterococcus faecium E4215]
Length = 331
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 26/231 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++++APM + FR+ ++GA LV E + D + +K ++L+ +
Sbjct: 8 GNVEIPNRVVVAPMAGITNSAFRVTVKEFGAGLVVCEMISDQGIHFRNKKTLEMLHIEET 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
PL LQI + + +EAA+ VE + AA IDINMGCP +
Sbjct: 68 EHPLS----------------LQIFGGNKDSLVEAAQFVEENTAADIIDINMGCPVNKVI 111
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL--EACGIIAI 200
GA L P+ ++ + S + IPV+ K+R+ +E A+ L ++ G AI
Sbjct: 112 KAEAGAKWLLDPEKVYEMVQAVSSAVDIPVTVKMRIGWDEEHVFAVENALAAQSAGASAI 171
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
+HGRT+ + + E+++ + +HL IP + NG +K ++DY G
Sbjct: 172 AMHGRTRVQMYEGKADWEVLKEVKKHLTIPFMGNGDVKTPEDAKRMLDYVG 222
>gi|387771850|ref|ZP_10128007.1| tRNA-dihydrouridine synthase B [Haemophilus parahaemolyticus HK385]
gi|386908235|gb|EIJ72933.1| tRNA-dihydrouridine synthase B [Haemophilus parahaemolyticus HK385]
Length = 321
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 25/227 (11%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
+ N+I LAPM + PFR L GA L +SE +++T V
Sbjct: 8 FKNRIFLAPMAGVTDQPFRRLCSQLGAGLTFSE----------------MMSTNPDVWHT 51
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMG 147
+ S + RE +QI ADP EAAK V + IDINMGCP + G
Sbjct: 52 EKSKLRLAHHREIGINAVQIAGADPIEMAEAAKVNVSYGAEIIDINMGCPAKKVNKKMAG 111
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGR 205
+ALL PD+ +IL T+++ + +PV+ KIR + + + + + E GI A+ +HGR
Sbjct: 112 SALLREPDLVADILNTVVNAVDVPVTLKIRTGWDLENRNCVEIAQIAEQAGIQALTLHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
T++ E I+ + + IP+IANG +K ++DY G
Sbjct: 172 TRSCLFNGEAEYESIKAVKNAVSIPIIANGDITSAEKAKFVLDYTGA 218
>gi|335044796|ref|ZP_08537819.1| TIM-barrel protein, nifR3 family [Oribacterium sp. oral taxon 108
str. F0425]
gi|333758582|gb|EGL36139.1| TIM-barrel protein, nifR3 family [Oribacterium sp. oral taxon 108
str. F0425]
Length = 352
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 18/213 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ I++APM + LP+R+L + G L +E + ++ + + LL +
Sbjct: 41 GKVQLPGNILMAPMAGVTDLPYRILCKEMGVSLTCTEMVSAKAILYGNKNTDSLLEKGE- 99
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
E K +Q+ +DPE E AK+VE D ID+NMGCP +
Sbjct: 100 ---------------EPGKRAVQLFGSDPEIMAEMAKRVEEDFDIIDVNMGCPVPKVVRN 144
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVS--CKIRVFHNEADTIALCKRLEACGIIAIGV 202
G G+AL+ +A +L +++ +SIP++ C++ + + + K E G+ AI V
Sbjct: 145 GEGSALMENLPLAEKVLRSMVKAVSIPITVKCRLGFTDDHINVLDFVKSAENAGVSAIVV 204
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
HGRT+ + R + E IR + + IP+ NG
Sbjct: 205 HGRTREQYYRGKADWEWIRRAKEAVHIPLFGNG 237
>gi|448081184|ref|XP_004194826.1| Piso0_005344 [Millerozyma farinosa CBS 7064]
gi|359376248|emb|CCE86830.1| Piso0_005344 [Millerozyma farinosa CBS 7064]
Length = 354
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 24/222 (10%)
Query: 33 IILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
I PMVR + LPFR L ++ D+VY+ ++ + V+ ND+ DF
Sbjct: 45 FIAGPMVRYSKLPFRELVRNFNTDIVYTPMILAREFVR-----NDIARLSDF-------- 91
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
T +I+Q+G + L + V I +N GCP + + G+GAAL+S
Sbjct: 92 ---TTNNADRPVIVQVGCNNATDLLRFVDMIHPYVDGIGLNCGCPIKEQVKEGIGAALMS 148
Query: 153 TPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
PD+ +++ + SI + KIR+ + +T+ K++EA G+ I VHGRTK R
Sbjct: 149 EPDLVADMVKAVKQKYGSSIVLETKIRIHSDINETLRFAKKVEASGVDFITVHGRTKNTR 208
Query: 211 PRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGGV 246
+ I+ + +++ +PV+ANG + I +Y GV
Sbjct: 209 SSQPANHDAIKLVKENVSVPVVANGDCFSLEDAHRIAEYTGV 250
>gi|317495837|ref|ZP_07954200.1| dihydrouridine synthase [Gemella morbillorum M424]
gi|316914014|gb|EFV35497.1| dihydrouridine synthase [Gemella morbillorum M424]
Length = 335
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 20/213 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ NK++LAPM + FRL A ++GA LV +E + D ++ +K ++L ++D
Sbjct: 7 VEIPNKVVLAPMAGVCNAAFRLTAKEFGAGLVCAEMVSDKAILFNNQKTMNML----YID 62
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTG 144
P RE+ + LQI + + +EAAK V+ + A ID+NMGCP
Sbjct: 63 P-----------RER-PLSLQIFGGEIDTLVEAAKYVDKNTEADIIDLNMGCPVPKITKV 110
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAIGV 202
G+ LL PD ++ L+ +S PV+ K+R+ ++ + + E G AI +
Sbjct: 111 DAGSKLLLDPDKVYEVIARLVDAVSKPVTVKMRMGWDDEHIYIMDNARNAERAGASAIAI 170
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
HGRTK + + ++IR + + LKIPVI NG
Sbjct: 171 HGRTKVQMYSGKANWDVIRDVKKELKIPVIGNG 203
>gi|365986096|ref|XP_003669880.1| hypothetical protein NDAI_0D03230 [Naumovozyma dairenensis CBS 421]
gi|343768649|emb|CCD24637.1| hypothetical protein NDAI_0D03230 [Naumovozyma dairenensis CBS 421]
Length = 429
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ L +E+ D+ + D LD +V
Sbjct: 19 IVAPMVDQSELAWRILSRRYGATLTYTPMLHAKLFATSEKYRKDMWSEYDGDADLDRPLV 78
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+ C DPE L+AAK +E+ A+D+N+GCP+ + G G+ L+
Sbjct: 79 VQFC------------ANDPEYLLKAAKLIENKCDAVDLNLGCPQGIARKGHYGSFLMEE 126
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
D+ ++ TL NL++PV+ KIRVF T+ K + G + VHGR + ++ +
Sbjct: 127 WDLIHKLIKTLHDNLNVPVTAKIRVFPEREKTLEYAKMVLDAGAQFLTVHGRLREQKGQK 186
Query: 214 RN--RIEMIRTLTQHLKIPVI--ANG 235
E+I+ L +L + ANG
Sbjct: 187 TGLADWEIIKYLRDNLPSDTVFFANG 212
>gi|296082372|emb|CBI21377.3| unnamed protein product [Vitis vinifera]
Length = 316
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+I+APMV + LPFR+L YGA Y+ L + E+ S
Sbjct: 69 KLIVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSRIFSENEKY---------------RS 113
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
F TC +E + +Q DP+ LEAA++VE +DIN+GCP++ + G GA L+
Sbjct: 114 QEFTTC-KEDRPLFVQFCANDPDTLLEAAQRVEPYCDYVDINLGCPQRIARRGNYGAFLM 172
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLE--ACGIIA 199
+ +++ L NL +PVSCKIRVF N DTI + LE C ++A
Sbjct: 173 DNLPLVKSLVEKLALNLHVPVSCKIRVFPNLQDTINYARMLEDAGCSLLA 222
>gi|118589891|ref|ZP_01547295.1| tRNA-dihydrouridine synthase, putative [Stappia aggregata IAM
12614]
gi|118437388|gb|EAV44025.1| tRNA-dihydrouridine synthase, putative [Stappia aggregata IAM
12614]
Length = 334
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 24/259 (9%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+N +LAPM + LPFR LA YGA +V SE + VK D
Sbjct: 12 ANPAMLAPMSGVTDLPFRRLAARYGAGMVVSEMVASESFVKG-----------------D 54
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVA-AIDINMGCPKQFSLTGGMGA 148
R ++K ++Q+ + EAAK V A IDINMGCP + +G G+
Sbjct: 55 AETQMRAEAQDKGLHVVQLAGREARWMGEAAKVVAGLGADVIDINMGCPAKKVTSGYSGS 114
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVHGRT 206
AL+ D A ++ ++ + IPV+ K+R+ ++ A L +R EA GI I VHGRT
Sbjct: 115 ALMRDLDHALTLIEATVAAVDIPVTLKMRLGWDDKSLNAPELARRAEAAGIKLITVHGRT 174
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA----FLRNHYPVEK 262
+ + + I + + + +P+IANG K + + L+ A R Y
Sbjct: 175 RCQFYKGNADWRAIAAVKEAISVPLIANGDCKGFENALRMLELSGADGVMIGRGAYGRPW 234
Query: 263 LPKTILYAHCKYKRFEVPK 281
LP I + ++ E P+
Sbjct: 235 LPGHIGHFLATGEKLEAPR 253
>gi|50303583|ref|XP_451733.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640865|emb|CAH02126.1| KLLA0B04499p [Kluyveromyces lactis]
Length = 425
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ +E+ D+ +D + +D +V
Sbjct: 21 IVAPMVDQSELAWRILSRKYGATLAYTPMFHAKLFATSEKYRKDMWCELDGDEKIDRPLV 80
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+ C DPE L+AAK V++ A+D+N+GCP+ + G GA L+
Sbjct: 81 VQFC------------ANDPEYLLQAAKLVQNKCDAVDLNIGCPQGIARKGKYGAFLMED 128
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
D+ +++TL +L +PV+ KIRVF T+ K + G + VHGR + ++ +
Sbjct: 129 WDLISRLISTLHEHLDVPVTAKIRVFPEREKTLEYAKMILKSGAQFLTVHGRLREQKGQQ 188
Query: 214 RN--RIEMIRTLTQHLKIPVI--ANG 235
E+I+ L +L + ANG
Sbjct: 189 TGLADWEIIKYLRDNLPQDTVFFANG 214
>gi|407701862|ref|YP_006826649.1| tRNA-dihydrouridine synthase B [Alteromonas macleodii str. 'Black
Sea 11']
gi|407251009|gb|AFT80194.1| tRNA-dihydrouridine synthase B [Alteromonas macleodii str. 'Black
Sea 11']
Length = 332
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 108/225 (48%), Gaps = 25/225 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N ++LAPM + PFR L GA LV SE L + V K +N +G
Sbjct: 10 NNLMLAPMAGVTDRPFRQLCKRLGAGLVVSEMLSSNPKVWNTAKSQARMNH-------EG 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
R+ +QI ADPE +AA+ VE+ IDINMGCP + G+A
Sbjct: 63 EEGIRS---------VQIAGADPELMAQAAQFNVENGAQIIDINMGCPAKKVNKKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRTK 207
LL PD I+ +++ + +PV+ KIR N + + + + E GI ++ VHGRT+
Sbjct: 114 LLQYPDTVEAIIKAVVNAVDVPVTLKIRTGWNPENRNGVEIARIAEQNGIQSLAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
A + IR + + IPVIANG ++E+++Y G
Sbjct: 174 ACMYKGEAEYSTIRQIKAAISIPVIANGDITSPEKAQEVLNYTGA 218
>gi|283795849|ref|ZP_06345002.1| tRNA-dihydrouridine synthase [Clostridium sp. M62/1]
gi|291076480|gb|EFE13844.1| TIM-barrel protein, nifR3 family [Clostridium sp. M62/1]
gi|295091061|emb|CBK77168.1| tRNA-U20-dihydrouridine synthase [Clostridium cf. saccharolyticum
K10]
Length = 319
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 106/216 (49%), Gaps = 23/216 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ + + LAPM + LPFR+L + G L+ +E + L+ R LL T
Sbjct: 6 GNVELDSPVALAPMAGVTDLPFRILCREQGCGLMCTEMVSAKALLYKNRNTKPLLETKP- 64
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE---HDVAAIDINMGCPKQFS 141
E+ + +Q+ +DPE E A +E +D+ ID+NMGCP
Sbjct: 65 ---------------EERPVAVQLFGSDPEIMSEMALMLEEGPYDI--IDVNMGCPVPKI 107
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FHNEA-DTIALCKRLEACGIIA 199
+ G G+AL+ P +A IL+ + L PV+ K R F++E+ + + K E G A
Sbjct: 108 VNNGEGSALMKNPKLAGEILSAMTRKLKKPVTVKFRKGFNDESVNAVEFAKMAEQSGAAA 167
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ VHGRT+ + + ++IR + + + IPVI NG
Sbjct: 168 VAVHGRTREQFYSGKADWDIIRQVKEAVSIPVIGNG 203
>gi|268590774|ref|ZP_06124995.1| tRNA-dihydrouridine synthase B [Providencia rettgeri DSM 1131]
gi|291313551|gb|EFE54004.1| tRNA-dihydrouridine synthase B [Providencia rettgeri DSM 1131]
Length = 327
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 112/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTIDFVDPLD 89
N +I APM + PFR L D GA + SE L + ++ KT++
Sbjct: 10 NCLIAAPMAGITDKPFRSLCYDMGAGMTVSEMLSSNPQVWKTDKSR-------------- 55
Query: 90 GSVVFRTCPREKNKI-ILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMG 147
R R++ + +QI DP+ AA+ VE IDINMGCP + G
Sbjct: 56 ----LRMVHRDELGVRSVQIAGNDPDEMAAAAQINVESGAQIIDINMGCPAKKVNRKLAG 111
Query: 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGR 205
+ALL PDI +IL ++ + +PV+ KIR + E + I + K E CGI A+ +HGR
Sbjct: 112 SALLRYPDIVKSILEGVVKAVDVPVTLKIRTGWSPEERNCIEIAKLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDNIRAVKQTVTIPVIANGDITDPLKARAVLDYTGADAL 221
>gi|432890721|ref|XP_004075495.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Oryzias latipes]
Length = 320
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 24/214 (11%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y D+ ++ ++ +++ + + T PL
Sbjct: 22 MCAPMVRYSKLAFRSLVRKYSCDVCFTPMIIAADFLRSVKARDSEFTTNKSDRPL----- 76
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
I+Q DP+ +AA V +D+N GCP++++++ G GA L++
Sbjct: 77 -----------IVQFAAQDPQTLADAACVVAPFSDGVDLNCGCPQRWAMSAGYGACLINK 125
Query: 154 PDIACNILTTL---ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + N VS KIR+ + T+ LC++ E+ G+ I VHGRT ER
Sbjct: 126 PELVEDMVRHVRNQVDNPDYTVSIKIRIHKDLRQTVDLCQKAESAGVSWITVHGRTTEER 185
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
P H + I+T+ + +PVIANG K + D
Sbjct: 186 HQPVH---YDAIKTIKDSVSVPVIANGDIKYLRD 216
>gi|431744843|ref|ZP_19533709.1| tRNA-dihydrouridine synthase [Enterococcus faecium E2071]
gi|430605003|gb|ELB42425.1| tRNA-dihydrouridine synthase [Enterococcus faecium E2071]
Length = 334
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 26/231 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
N+ N++++APM + FR+ ++GA LV E + D + +K ++L+ +
Sbjct: 8 GNVEIPNRVVVAPMAGITNSAFRVTVKEFGAGLVVCEMISDQGIHFRNKKTLEMLHIEET 67
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
PL LQI + + +EAA+ VE + AA IDINMGCP +
Sbjct: 68 EHPLS----------------LQIFGGNKDSLVEAAQFVEENTAADIIDINMGCPVNKVI 111
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL--EACGIIAI 200
GA L P+ ++ + S + IPV+ K+R+ +E A+ L ++ G AI
Sbjct: 112 KAEAGAKWLLDPEKVYEMVQAVSSAVDIPVTVKMRIGWDEEHVFAVENALAAQSAGASAI 171
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG------GSKEIVDYGG 245
+HGRT+ + + E+++ + +HL IP + NG +K ++DY G
Sbjct: 172 AMHGRTRVQMYEGKADWEVLKEVKKHLTIPFMGNGDVKTPEDAKRMLDYVG 222
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,507,140,702
Number of Sequences: 23463169
Number of extensions: 179334989
Number of successful extensions: 419033
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4068
Number of HSP's successfully gapped in prelim test: 4064
Number of HSP's that attempted gapping in prelim test: 403494
Number of HSP's gapped (non-prelim): 8525
length of query: 306
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 164
effective length of database: 9,027,425,369
effective search space: 1480497760516
effective search space used: 1480497760516
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 76 (33.9 bits)