BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4398
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens
GN=DUS2L PE=1 SV=1
Length = 493
Score = 261 bits (667), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPKQ+S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 219
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D GV + F R YP + PK L C+ ++ P YETVQ ++LF S+VTV
Sbjct: 348 DTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAE 407
Query: 300 KQYTS 304
++Y S
Sbjct: 408 QKYQS 412
>sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus
GN=Dus2l PE=1 SV=1
Length = 493
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+++++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT+ L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+IR + + L IPVIANGGS +
Sbjct: 183 HGRNRDERPQHPVSCEVIRAIAETLSIPVIANGGSHD 219
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
D G+ + F R YP + PK L C+ ++ P YETVQ +++F S+VTV
Sbjct: 348 DTSGIIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAE 407
Query: 300 KQYTSKF 306
++Y S
Sbjct: 408 QKYQSTL 414
>sp|O74731|DUS2_SCHPO tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dus2 PE=3 SV=1
Length = 479
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 137/219 (62%), Gaps = 10/219 (4%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK---TERKVNDLLNTID 83
+NYSNK+ LAPMVR+ LP RLLAL YGA+LV+ E+VD L+ ER VND +N ID
Sbjct: 4 LNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCID 63
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
FV P V+FR P E N++I Q+G+A PE A+EAAK V +DVA ID+N GCPK FS+
Sbjct: 64 FVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVH 123
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGIIA 199
GMGA LL D +IL L++ + P +SCKIR+ + DT+ L +R+ G+ A
Sbjct: 124 AGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRA 183
Query: 200 IGVHGRTKAER---PRHRNRIEMIRTLTQHLKIPVIANG 235
I VH RT R P R+ + I + ++ + ++ NG
Sbjct: 184 ITVHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNG 222
>sp|P53720|DUS2_YEAST tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMM1 PE=1
SV=1
Length = 384
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 140/226 (61%), Gaps = 13/226 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RL+AL +GADLV+S E++D KL++ RK N L T+D+V
Sbjct: 2 VTYAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVV 61
Query: 87 PLD-----GSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P ++VFRT P+ E +K+I QIG+A P A +AA KV +DV+ IDIN GCPK F
Sbjct: 62 PSKVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHF 121
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACG 196
S+ GMG+ALL TPD C IL L+ N+ S P+S KIR+ + DT+ L KRL A G
Sbjct: 122 SIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATG 181
Query: 197 IIAIGVHGRTKAERPRHR---NRIEMIRTLTQHLKIPVIANGGSKE 239
I + VH R R R + + I I + Q + +I NG ++
Sbjct: 182 ITNLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAIRD 227
>sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo
sapiens GN=DUS4L PE=2 SV=2
Length = 317
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVHYDSIKIIK---ENMSIPVIANGDIRSLKEAENVWRIT 232
>sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1
Length = 330
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + I+ + Q + IPVIANG +K +++Y G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTG 217
>sp|Q87KU1|DUSB_VIBPA tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusB PE=3 SV=2
Length = 322
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL KT + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWKTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P I IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPTIIEEILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + + + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADAL 221
>sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus
musculus GN=Dus4l PE=2 SV=1
Length = 324
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ ++ V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + A TI LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I+MI+ +++ IP++ANG + + + V+ +
Sbjct: 194 HQPVHYDAIKMIK---ENVSIPIVANGDIRSLKEAENVWQMT 232
>sp|P0ABT5|DUSB_ECOLI tRNA-dihydrouridine synthase B OS=Escherichia coli (strain K12)
GN=dusB PE=3 SV=1
Length = 321
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>sp|P0ABT6|DUSB_ECOL6 tRNA-dihydrouridine synthase B OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusB PE=3 SV=1
Length = 321
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>sp|P0ABT7|DUSB_ECO57 tRNA-dihydrouridine synthase B OS=Escherichia coli O157:H7 GN=dusB
PE=3 SV=1
Length = 321
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++ N+++LAPM + +PFR LA +GA LV +E +V + VND + +
Sbjct: 1 MSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTE------MVASRELVNDTAESWSRLK 54
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGG 145
+ FR ++Q+ + EAAK +H IDINMGCP + + G
Sbjct: 55 ----AAGFRPH-------MVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGY 103
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGVH 203
G+AL+ PD A ++ + + IPV+ K+R+ +E A + +R EA GI + +H
Sbjct: 104 SGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIH 163
Query: 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
GRT+ + R + IR + + + +P+IANG
Sbjct: 164 GRTRMQFYEGRADWDAIRAVREVISVPLIANG 195
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 25/222 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N+I LAPM + PFR + YGA L +SE +++T V +
Sbjct: 10 NRIFLAPMAGITDQPFRRICTHYGAGLTFSE----------------MMSTNPQVWHTEK 53
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S + +E +QI DP+ +AA+ VE+ IDINMGCP + G+A
Sbjct: 54 SKLRLAHHQEAGINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ IL ++ ++++PV+ KIR ++ + + + K E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDY 243
+ + I+ + + L IP+IANG +K ++DY
Sbjct: 174 SCMFEGEAEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDY 215
>sp|Q8PCH1|DUSB_XANCP tRNA-dihydrouridine synthase B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusB PE=3 SV=1
Length = 332
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG--- 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
E + I +QI +P++ EAA+ V+H IDINMGCP + G+
Sbjct: 63 ----------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHG 204
AL+ D+ IL+ ++ + +PV+ KIR H TIA + + CGI A+ VHG
Sbjct: 113 ALMRDEDLVARILSAVVRAVDVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+ + I + L+IPVIANG
Sbjct: 171 RTRDQHYTGTAEYATIAQIKAALQIPVIANG 201
>sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1
SV=1
Length = 423
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 17/206 (8%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I+APMV + L +R+L+ YGA L Y+ ++ KL T +K + D LDGS V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTP-MLHAKLFATSKKYRE-----DNWSSLDGSSV 85
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
R +++Q DPE L AAK VE A+D+N+GCP+ + G G+ L+
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
D+ N++ TL NL +PV+ KIR+F + ++ K + G + VHGR + ++ +
Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQK 198
Query: 214 RN--RIEMIRTLTQHLKIPVI--ANG 235
E I+ L +L + ANG
Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANG 224
>sp|Q8PP72|DUSB_XANAC tRNA-dihydrouridine synthase B OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusB PE=3 SV=1
Length = 332
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 23/211 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ K+ILAPM + PFRLL GA L SE + RK L+ +D
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKS---LHRMDHAG--- 62
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
E + I +QI +P++ EAA+ V+H IDINMGCP + G+
Sbjct: 63 ----------EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHG 204
AL+ ++ ILT ++ +++PV+ KIR H TIA + + CGI A+ VHG
Sbjct: 113 ALMRDEELVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIA--RIAQDCGIAALAVHG 170
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
RT+ + I + L+IPV+ANG
Sbjct: 171 RTRDQHYTGSAEYATIAQIKAALQIPVVANG 201
>sp|Q83PZ5|DUSB_SHIFL tRNA-dihydrouridine synthase B OS=Shigella flexneri GN=dusB PE=3
SV=1
Length = 321
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + P+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSAPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>sp|O52533|DUSB_PROVU tRNA-dihydrouridine synthase B OS=Proteus vulgaris GN=dusB PE=3
SV=2
Length = 323
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N +I APM + PFR L D GA + SE +L++ V D
Sbjct: 10 NCLIAAPMAGVTDRPFRSLCYDMGAGMTVSE----------------MLSSNPQVWQTDK 53
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTGGMGA 148
S + E +QI +DP + AA K+ D A IDINMGCP + G+
Sbjct: 54 SRLRMVHSDELGIRSVQIAGSDPVD-MAAAAKINADSGAQIIDINMGCPAKKVNKKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL+ +++ + +PV+ KIR +E + + + K E CGI A+ +HGRT
Sbjct: 113 ALLRHPDLVAEILSAVVNAVDVPVTLKIRTGWSPDERNCVEIAKLAERCGIQALTIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+ + + IRT+ Q++ IP+IANG ++ ++DY G +L
Sbjct: 173 RECLFKGEAEYDSIRTVKQNVSIPIIANGDITDPLKARAVLDYTGADAL 221
>sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus1 PE=3 SV=1
Length = 399
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 19/197 (9%)
Query: 19 MANANQANINYSNKI-----ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER 73
MA+ ++ NKI ILAPMV + LP+R+LA GADL YS ++E
Sbjct: 1 MASKKLHGRDFYNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESED 60
Query: 74 KVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDIN 133
N + +T RT P E+ +I+Q DPE L+AAK A+D+N
Sbjct: 61 YRNKVFST-------------RTIPEER-PLIIQFCGNDPEIMLKAAKIAAPYCDAVDVN 106
Query: 134 MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLE 193
+GCP+ + G G+ L ++ +I+T L + LSIPV+ KIR+F + T+ K +
Sbjct: 107 LGCPQGIAKKGKYGSFLQENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMIL 166
Query: 194 ACGIIAIGVHGRTKAER 210
G + VHGR + ++
Sbjct: 167 KAGASILAVHGRLREQK 183
>sp|Q8CWL2|DUSB_VIBVU tRNA-dihydrouridine synthase B OS=Vibrio vulnificus (strain CMCP6)
GN=dusB PE=3 SV=2
Length = 322
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDH-KLVKTERKVNDLLNTID 83
N NK+I+APM + PFR L L YGA + SE + + +L KT + +++
Sbjct: 4 GNYQLKNKLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPQLWKTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT--IALCKRLEACGIIAI 200
G+ALL PDI IL ++ + +PV+ K R + + I + K E CGI A+
Sbjct: 107 KKLAGSALLKYPDIIEQILKAVVDAVDVPVTLKTRTGWDTENKNCIHIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + Q + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKQAVSIPVIANGDIDSPEKAKYVLEYTGADAL 221
>sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2
OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2
Length = 284
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 20/202 (9%)
Query: 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97
MVR + L FR L Y D+ ++ + +++E+ + L+ + PL
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPL--------- 51
Query: 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157
I+Q T DP EAA+ V +D+N GCPK + G G+ALLS P++
Sbjct: 52 -------IVQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELL 104
Query: 158 CNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR 214
+++ + + P VS KIR+ H+ T+ LC++ EA G+ + VHGRT ++R
Sbjct: 105 ADMVRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEPI 164
Query: 215 NRIEMIRTLTQHLKIPVIANGG 236
+ I+ +R + + +P+IANGG
Sbjct: 165 D-IQALRIVKDSVSVPIIANGG 185
>sp|P0A2R6|DUSB_SALTY tRNA-dihydrouridine synthase B OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusB PE=3 SV=1
Length = 321
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ +IL +++ + +PV+ KIR + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGADAL 221
>sp|P0A2R7|DUSB_SALTI tRNA-dihydrouridine synthase B OS=Salmonella typhi GN=dusB PE=3
SV=1
Length = 321
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL PD+ +IL +++ + +PV+ KIR + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDLVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 174 ACLFNGEAEYDSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGADAL 221
>sp|O52539|DUSB_ERWCA tRNA-dihydrouridine synthase B OS=Erwinia carotovora GN=dusB PE=3
SV=2
Length = 321
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+N++I APM ++ PFR L GA + SE L + V R L +
Sbjct: 4 GQFQLTNRLIAAPMAGISDRPFRALCHAMGAGMTVSEMLSSNPEVW--RSDKSRLRMVHS 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
+P +V QI DP+ + AA+++ D A IDINMGCP +
Sbjct: 62 DEPGIRAV--------------QIAGCDPDE-MAAARRINADSGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAI 200
G+ALL PD+ IL+T++ + +PV+ KIR + + + K E CGI A+
Sbjct: 107 RKMAGSALLQYPDLVKQILSTVVKAVDVPVTLKIRTGWAPEHRNCVEIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 167 TIHGRTRACLFNGFAEYDSIRAVKQAVSIPIIANGDITDPHKARAVLDYTGADAL 221
>sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus4 PE=3 SV=1
Length = 326
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 19/209 (9%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
I APMVR + LPFR L DY D+VY+ ++ + + + + D +T D D S
Sbjct: 23 IAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKGRYFDF-STND----ADAS-- 75
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
+ILQ G DP +AA+ V V I IN GCP+ +++ G+G+ALL
Sbjct: 76 ----------LILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDE 125
Query: 154 PDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
P+ ++ + S L S KIR+ + T L + +E G I VHGRT+ +R
Sbjct: 126 PEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDRS 185
Query: 212 RHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
++ IR + ++IPV+ANG K +
Sbjct: 186 SFPVNLDAIREVRPCVQIPVVANGDVKSL 214
>sp|Q92JQ6|DUS_RICCN Probable tRNA-dihydrouridine synthase OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=dus PE=3 SV=2
Length = 331
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 102/214 (47%), Gaps = 18/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI S+ IILAPM + L FR L +GA LV SE + ++ R+
Sbjct: 5 GNIELSSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMVASRAMIVESRQ---------- 54
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
L S + R + +Q+ +P EAAK E A I D+N GCP + +
Sbjct: 55 --SLKKSAIMRD---DATSACVQLAGCEPNVIAEAAKMNEGMGAKIIDLNFGCPAKKVVG 109
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIG 201
G G+AL+ +A I + + +PV+ K+R+ N + L K E+ G+ I
Sbjct: 110 GYSGSALMKDEQLAAKIFEATVEAVKLPVTVKMRMGWDDNTKNAPTLAKIAESSGVQMIT 169
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + IR++ + +KIPVIANG
Sbjct: 170 VHGRTRCQFYSGNADWDFIRSVKESVKIPVIANG 203
>sp|O52536|DUSB_KLEPN tRNA-dihydrouridine synthase B OS=Klebsiella pneumoniae GN=dusB
PE=3 SV=1
Length = 321
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + +D
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI + P+ AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSVPKEMAAAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTK 207
LL PD +ILT ++ + +PV+ KIR + + + + E CGI A+ +HGRT+
Sbjct: 114 LLQYPDQVKSILTAVVKAVDVPVTLKIRTGWEPEHRNCVEIAQLAEECGIQALTIHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 174 ACLFNGDAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 116/249 (46%), Gaps = 28/249 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
I+ +ILAPM + LPFR L G LV SE + +++ R+ T+
Sbjct: 6 GTISLEGPVILAPMSGVTDLPFRRLVKQSGCGLVVSEMVASQAMIRENRQ------TLRM 59
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAI-DINMGCPKQFSLT 143
V+ C E+ + +Q+ +P+ EAAK E AAI DIN GCP + +
Sbjct: 60 VE----------CEPEQFPMAVQLAGCEPDVMAEAAKLNEDRGAAIIDINFGCPVKKVVN 109
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIG 201
G G++L+ +A IL ++IPV+ K+R +++ A L + E CGI +
Sbjct: 110 GHAGSSLMRDEALAARILEATAKAVTIPVTLKMRKGWDDSSLNAPRLARIAEECGIKLVT 169
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG--SKEIVDYG-------GVFSLNCA 252
VHGRT+ + IR++ + + IPV+ NG S + VD GV A
Sbjct: 170 VHGRTREQFYNGTADWSFIRSVKEAVSIPVVVNGDITSFDAVDRALAESGADGVMIGRGA 229
Query: 253 FLRNHYPVE 261
+ R +P +
Sbjct: 230 YGRPWFPAQ 238
>sp|Q9ZED2|DUS_RICPR Probable tRNA-dihydrouridine synthase OS=Rickettsia prowazekii
(strain Madrid E) GN=dus PE=3 SV=2
Length = 327
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 100/215 (46%), Gaps = 20/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI S+ +ILAPM + L FR L +GA LV SE + ++ R+ I
Sbjct: 5 GNIELSSNVILAPMSDVTDLEFRKLVKRFGAGLVVSEMIASRAMIMKSRQSMQKC-AIMH 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
DP V C +P+ EAAK + D+ A ID+N GCP + +
Sbjct: 64 DDPTSACVQLAGC--------------EPDVIAEAAK-MNEDMGAKIIDLNFGCPAKKVV 108
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAI 200
G G+AL+ +A I + + IPV+ K+R+ N + L K G+ +
Sbjct: 109 GGYAGSALMRDEQLAAKIFEATVKAVKIPVTVKMRIGWDDNTRNAPTLAKIAANSGVQMV 168
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + IRT+ + +KIPVIANG
Sbjct: 169 TVHGRTRCQFYSGNANWDFIRTVKEAVKIPVIANG 203
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 27/229 (11%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELV-DHKLVKTERKVNDLLNTIDFVDPLD 89
N++ILAPM + PFR L GA +V SE + D +L + + L++ D
Sbjct: 13 NRLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLIH--------D 64
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGA 148
G E +QI DP EAA++ VE IDINMGCP + G+
Sbjct: 65 G---------EDEPRSVQIAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGS 115
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGVHGRT 206
ALL + IL ++ + +PV+ KIR + + + + K E GI A+ VHGRT
Sbjct: 116 ALLRDEALVAEILDAVVRAVDVPVTLKIRTGWDRDNRNGVTVAKLAEQAGIQALAVHGRT 175
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A+ E I + Q + IPV ANG ++++++ GV +L
Sbjct: 176 RADLYTGEAEYETIAAIKQAVSIPVFANGDIDSPEKARKVIEQTGVDAL 224
>sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus1l PE=2 SV=1
Length = 438
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
++APMV + L +RLL+ +GA L Y+ L V+ + L + D
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENL----YCD------- 68
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP E +I+Q DPE ++AA + AID+N+GCP+ + G GA L
Sbjct: 69 --VCP-EDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEE 125
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
D+ ++ LS+PV+CKIRVF T+ + LE G + VHGRTK ++
Sbjct: 126 WDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPM 185
Query: 214 RN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
E I+ + + + IPV ANG + + D
Sbjct: 186 AGTASWEHIKAVRKAVGIPVFANGNIRCLQD 216
>sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo
sapiens GN=DUS1L PE=1 SV=1
Length = 473
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 102/213 (47%), Gaps = 20/213 (9%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE--RKVNDLLNTIDFVDPLDGS 91
++APMV + L +RLL+ +GA L Y+ L V+ RK N
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKEN--------------- 64
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
+ CP E +I+Q DPE ++AA + AID+N+GCP+ + G GA L
Sbjct: 65 LYCEVCP-EDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQ 123
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
D+ ++ LS+PV+CKIRVF T+ + LE G + VHGRTK ++
Sbjct: 124 DEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKG 183
Query: 212 --RHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242
E I+ + + + IPV ANG + + D
Sbjct: 184 PLSGAASWEHIKAVRKAVAIPVFANGNIQCLQD 216
>sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus
musculus GN=Dus1l PE=2 SV=1
Length = 475
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
++APMV + L +RLL+ +GA L Y+ L V+ + L + D
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENL----YCD------- 68
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP E +I+Q DPE ++AA + AID+N+GCP+ + G GA L
Sbjct: 69 --VCP-EDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEE 125
Query: 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH 213
D+ ++ LS+PV+CKIRVF T+ + LE G + VHGRTK ++
Sbjct: 126 WDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPM 185
Query: 214 RN--RIEMIRTLTQHLKIPVIANGGSKEIVD 242
E I+ + + + IPV ANG + + D
Sbjct: 186 AGTASWEHIKAVRKAVGIPVFANGNIQCLQD 216
>sp|Q9KV66|DUSB_VIBCH tRNA-dihydrouridine synthase B OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=dusB PE=3
SV=2
Length = 322
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + L KT + N +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ EAA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL PD+ +IL +++ +++PV+ K R + + +++ + E CGI A+
Sbjct: 107 KKLAGSALLRYPDVIEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT+A + + I+ + + IPVIANG ++ +++Y G +L
Sbjct: 167 ALHGRTRACMYKGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADAL 221
>sp|Q4UNJ4|DUS_RICFE Probable tRNA-dihydrouridine synthase OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=dus PE=3 SV=1
Length = 325
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 20/215 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+I S+ +ILAPM + L FR L +GA LV SE + +V R+ I
Sbjct: 5 GDIELSSNVILAPMSDITDLEFRKLVKRFGAGLVVSEMIASRAMVVKSRQSMQKC-AIVH 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
DP V C +P EAAK + D+ A ID+N GCP + +
Sbjct: 64 DDPTSACVQLAGC--------------EPNVIAEAAK-MNEDMGAKIIDLNFGCPAKKVV 108
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAI 200
G G+AL+ +A I + + IP++ K+R+ N + L K E+ G+ +
Sbjct: 109 GGYAGSALMRDEQLAAKIFEATVKAVKIPITVKMRMGWDDNTKNAPDLAKIAESSGVQMV 168
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
VHGRT+ + + IR++ + +KIPVIANG
Sbjct: 169 TVHGRTRCQFYSGNADWDFIRSVKEAVKIPVIANG 203
>sp|Q1RH84|DUS_RICBR Probable tRNA-dihydrouridine synthase OS=Rickettsia bellii (strain
RML369-C) GN=dus PE=3 SV=1
Length = 326
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 26/218 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI S+ IILAPM + L FR L +GA LV SE + ++ R+
Sbjct: 5 GNIELSSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMIASRAMIVESRQS--------- 55
Query: 85 VDPLDGSVVFRTCP---REKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQ 139
+ C + +Q+ +P EAAK + D+ A ID+N GCP +
Sbjct: 56 ---------LQKCSIMQDDATSACVQLAGCEPNVIAEAAK-MNEDMGAKIIDLNFGCPAK 105
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGI 197
+ G G+AL+ +A I + + IPV+ K+R+ ++ A L K E GI
Sbjct: 106 KVVNGYSGSALMRDEGLAAKIFEAAVKAVKIPVTVKMRMGWDDQTKNAPTLAKIAERSGI 165
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ VHGRT+ + E I+ + + +KIPVIANG
Sbjct: 166 QMVTVHGRTRCQFYSGNADWEFIKNVKEAVKIPVIANG 203
>sp|Q8ZAX7|DUSB_YERPE tRNA-dihydrouridine synthase B OS=Yersinia pestis GN=dusB PE=3 SV=1
Length = 321
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 25/234 (10%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ +N +I APM + PFR L GA + SE L + V K + +D
Sbjct: 4 GHFQLTNCLIAAPMAGITDRPFRALCHGMGAGMAVSEMLSSNPEVWRTDKSRLRMVHVDE 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLT 143
P +N +QI DP+ AA+ V IDINMGCP +
Sbjct: 64 -------------PGIRN---VQIAGNDPDEMAAAARINVASGAQIIDINMGCPAKKVNR 107
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIG 201
G+ALL PD+ IL+ +++ + +PV+ KIR + + I + + E CGI A+
Sbjct: 108 KLAGSALLQHPDLVKQILSAVVNAVDVPVTLKIRTGWSPEHRNCIEIAQLAENCGIQALT 167
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRT++ + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 168 IHGRTRSCLFNGEAEYDSIRAVKQTVSIPVIANGDITDPHKARAVLDYTGADAL 221
>sp|Q55724|DUS1_SYNY3 Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus1 PE=3 SV=1
Length = 355
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 19/214 (8%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
++ ++++ +P+ + L FR L Y + E+V + R + ++ ID
Sbjct: 36 GSLTLHSRVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEIHHLRTLPQVME-ID- 93
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLT 143
PRE N I +Q+ P+ EAA+K V ++DINMGCP
Sbjct: 94 -------------PRE-NPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITK 139
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIG 201
G G++LL P +A I+ T+++ + +PV+ K R+ + E + + +RL+ G +
Sbjct: 140 KGGGSSLLRQPAVAEAIVKTVVAAVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLT 199
Query: 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+HGRT+A+ R R + I + Q L IPVIANG
Sbjct: 200 LHGRTRAQGYNGRARWQWIAKVKQALTIPVIANG 233
>sp|Q8EJR8|DUSB_SHEON tRNA-dihydrouridine synthase B OS=Shewanella oneidensis (strain
MR-1) GN=dusB PE=3 SV=1
Length = 322
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 25/228 (10%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I+APM + FR L L YGA L SE +L++ V D
Sbjct: 10 NQLIVAPMAGVTDQAFRNLCLRYGAALAVSE----------------MLSSNPEVWDTDK 53
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
S T E+ +QI ADPE +AA+ VE IDINMGCP + G+A
Sbjct: 54 SRQRMTHSGEEGIRSVQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTK 207
L+ P + +IL +++ + +PV+ KIR + + + + E CGI ++ VHGRT+
Sbjct: 114 LMQNPPLVKDILQAVVAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTR 173
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+ + I+ + Q++ IPV+ANG ++ ++DY GV +L
Sbjct: 174 QCMYKGNAEYDTIKAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDAL 221
>sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1
SV=1
Length = 367
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER-KVNDLLNTIDFVDPLDGSV 92
I PMVR + LPFR L +Y D+VYS ++ + V+ E +++DL
Sbjct: 42 IAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDL-------------- 87
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLS 152
+ E +I+Q+G + L+ + V I IN GCP + + G+G AL+
Sbjct: 88 ---STNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIY 144
Query: 153 TPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
D+ C+++ + + + KIR+ +T+ LC++L G+ I +HGRT+ R
Sbjct: 145 NSDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTR 204
Query: 211 PRHRNRIEMIRTLTQHLK---IPVIANGGSKEIVD 242
++ I+ + +++ +PVIANG ++ D
Sbjct: 205 SSQPANLDAIKYIIENISDKNVPVIANGDCFKLSD 239
>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium
discoideum GN=dus3l PE=3 SV=1
Length = 671
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
IN+ N++ILAP+ + LPFR + GAD+ E + KL++ + LL
Sbjct: 320 INFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEGTKSELALL------- 372
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSLTG 144
+ P E +K +QI + + A++ A+ +E+++ A +DIN GCP
Sbjct: 373 --------KRHPCE-DKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNM 423
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIA--LCKRLEACGIIAIGV 202
G GAAL+ P +L + S+LS P + KIR+ +E A L L G A+ +
Sbjct: 424 GAGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTL 483
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
HGR++A+R + ++ ++ IP+I NG +I +Y V ++
Sbjct: 484 HGRSRAQRYSRLANWDYVKQCSEVSSIPLIGNG---DIYNYQDVVNI 527
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 20/218 (9%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+I N+++LAPM + FRL ++GA LV +E + D ++ + +L +
Sbjct: 5 GDIQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGML----Y 60
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
+D REK + LQI E +EAAK V+ + A IDINMGCP
Sbjct: 61 ID-----------EREK-PLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKIT 108
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAI 200
GA L PD +++ ++ ++ PV+ K+R+ +E A+ + +E G A+
Sbjct: 109 KCDAGAKWLLDPDKIYEMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAV 168
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK 238
+HGRT+ + ++I+ + Q + IPVI NG K
Sbjct: 169 ALHGRTRVQMYEGTANWDIIKEVKQSVSIPVIGNGDVK 206
>sp|Q68XZ3|DUS_RICTY Probable tRNA-dihydrouridine synthase OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=dus PE=3 SV=1
Length = 327
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 24/217 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
NI S+ +ILAPM + L FR L +GA LV SE + ++ R+ I
Sbjct: 5 GNIELSSNVILAPMSNITDLEFRKLVKRFGAGLVVSEMIASRAMIMKSRQSMQKC-AIMH 63
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA--IDINMGCPKQFSL 142
DP V C +P+ +AA K+ D+ A ID+N GCP + +
Sbjct: 64 DDPTSACVQLAGC--------------EPDVIADAA-KMNEDMGAKIIDLNFGCPAKKVV 108
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE----ADTIALCKRLEACGII 198
G G+AL+ +A I + + IPV+ K+R+ ++ A T+A+ + G+
Sbjct: 109 GGYAGSALMRDERLATKIFEATVKAVKIPVTVKMRMGWDDNTKNAPTLAVIA--ASSGVQ 166
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
+ VHGRT+ + + IR + + +KIPVIANG
Sbjct: 167 MVTVHGRTRCQFYSGNANWDFIRVVKEAVKIPVIANG 203
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 110/233 (47%), Gaps = 27/233 (11%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
Q IN ++I LAPM + PFR L GA L +SE +++T
Sbjct: 4 GQYEIN--SRIFLAPMAGITDQPFRRLCSQLGAGLTFSE----------------MMSTN 45
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFS 141
V + S + E +QI ++P EAAK V + IDINMGCP +
Sbjct: 46 PDVWHTEKSRLRLAHHAEIGINAVQIAGSEPTEIAEAAKINVAYGAQIIDINMGCPAKKV 105
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA--DTIALCKRLEACGIIA 199
G+ALL P + IL +++ + +PV+ KIR ++ + + + K E GI A
Sbjct: 106 NKKMAGSALLREPQLVARILDAVVNAVDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISA 165
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV 246
+ +HGRT+ + E I+ + Q + +P+IANG +K+++DY G
Sbjct: 166 LTIHGRTRDCLFNGQAEYESIKAVKQAVFMPIIANGDITSPQKAKDVLDYTGA 218
>sp|Q88DK5|DUSB_PSEPK tRNA-dihydrouridine synthase B OS=Pseudomonas putida (strain
KT2440) GN=dusB PE=3 SV=1
Length = 337
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 96/208 (46%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N +ILAPM + PFR L GA +V SE + + RK + L I DP
Sbjct: 13 NNLILAPMAGVTDQPFRTLCQRLGAGMVVSEMVSSDMSLWNSRKSS--LRRIHEGDPE-- 68
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
PR +QI D + AAK VE IDINMGCP + G+A
Sbjct: 69 -------PRS-----VQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSA 116
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL--CKRLEACGIIAIGVHGRTK 207
LL + IL ++S + +PV+ KIR + A+ L K E GI A+ VHGRT+
Sbjct: 117 LLRDEALVSEILHAVVSAVDVPVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRTR 176
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
A+ + I + Q + IPV ANG
Sbjct: 177 ADLYTGEAEYDTIGAIKQAVSIPVFANG 204
>sp|Q87VS1|DUSB_PSESM tRNA-dihydrouridine synthase B OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dusB PE=3 SV=1
Length = 337
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 97/208 (46%), Gaps = 19/208 (9%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N +ILAPM + PFR L GA LV SE + + RK L I DP
Sbjct: 13 NGLILAPMAGVTDQPFRQLCRQLGAGLVVSEMVTSDMSLWNSRKSR--LRMIHAGDPE-- 68
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
PR +QI D + +AA+ VE IDINMGCP + G+A
Sbjct: 69 -------PRS-----VQIAGGDAQMMADAARANVELGAQIIDINMGCPAKKVCNKAAGSA 116
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGVHGRTK 207
LL + +IL +++ + +PV+ KIR + + + + K E GI A+ VHGRT+
Sbjct: 117 LLKDEQLVNDILQAVVAAVDVPVTLKIRTGWDRDNRNGLTVAKIAEQAGIQALAVHGRTR 176
Query: 208 AERPRHRNRIEMIRTLTQHLKIPVIANG 235
A+ + I + Q + IPV ANG
Sbjct: 177 ADLYTGEAEYDTIAMIKQAVSIPVFANG 204
>sp|O52532|DUSB_SERMA tRNA-dihydrouridine synthase B OS=Serratia marcescens GN=dusB PE=3
SV=2
Length = 334
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 104/229 (45%), Gaps = 25/229 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+N +I APM + PFR L GA + SE L + V R L + +P
Sbjct: 9 TNCLIAAPMAGITDRPFRTLCHAMGAGMAVSEMLSSNPEVW--RTDKSRLRMVHSDEPGI 66
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
SV QI DP+ AA+ V IDINMGCP + G+
Sbjct: 67 RSV--------------QIAGCDPDDMAAAARINVASGAQLIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++ + +PV+ KIR + + + + E CGI A+ +HGRT
Sbjct: 113 ALLQYPDLVKRILHAVVDAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + IR + Q + IP+IANG ++ ++DY G +L
Sbjct: 173 RACLFNGDAEYDSIRAVKQSVSIPIIANGDITDPHKARAVLDYTGADAL 221
>sp|P0CN29|DUS3_CRYNB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=DUS3 PE=3 SV=1
Length = 725
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 101/230 (43%), Gaps = 38/230 (16%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+N+ LAP+ + LPFR L +DYGA + SE + LV ++
Sbjct: 354 LNWEGGRYLAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLVYGAKE------------ 401
Query: 87 PLDGSVVFRTCPREKNKII-LQIGTADPERALEAAKKVEHDVAA------IDINMGCPKQ 139
+ ++V R E K+ +Q+ P R + AA+ + + + +D+NMGCP
Sbjct: 402 --EWALVRR---HESEKMFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPID 456
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIR--VFHNEADTIALCKR-LEAC 195
G G+AL+ +P +L + L IP++ K R V H + + L R +
Sbjct: 457 LVFNQGAGSALMDSPGRLGKLLVGMNRALGDIPLTVKFRTGVAHGKPNAHKLIPRFVTEW 516
Query: 196 GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK----------IPVIANG 235
G A+ +HGR++ +R E I+T L+ +P+ NG
Sbjct: 517 GAGALTIHGRSRQQRYSKPADWEYIKTCVTALRESVADANLPPVPIFGNG 566
>sp|P0CN28|DUS3_CRYNJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=DUS3 PE=3 SV=1
Length = 725
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 101/230 (43%), Gaps = 38/230 (16%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+N+ LAP+ + LPFR L +DYGA + SE + LV ++
Sbjct: 354 LNWEGGRYLAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLVYGAKE------------ 401
Query: 87 PLDGSVVFRTCPREKNKII-LQIGTADPERALEAAKKVEHDVAA------IDINMGCPKQ 139
+ ++V R E K+ +Q+ P R + AA+ + + + +D+NMGCP
Sbjct: 402 --EWALVRR---HESEKMFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPID 456
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIR--VFHNEADTIALCKR-LEAC 195
G G+AL+ +P +L + L IP++ K R V H + + L R +
Sbjct: 457 LVFNQGAGSALMDSPGRLGKLLVGMNRALGDIPLTVKFRTGVAHGKPNAHKLIPRFVTEW 516
Query: 196 GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK----------IPVIANG 235
G A+ +HGR++ +R E I+T L+ +P+ NG
Sbjct: 517 GAGALTIHGRSRQQRYSKPADWEYIKTCVTALRESVADANLPPVPIFGNG 566
>sp|Q8ZGV2|DUSC_YERPE tRNA-dihydrouridine synthase C OS=Yersinia pestis GN=dusC PE=3 SV=2
Length = 312
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 102/228 (44%), Gaps = 39/228 (17%)
Query: 32 KIILAPMVR-MNTLPFRLLALDYGADLVYSEELVDHKLVKTE--RKVNDLLNTIDFVDPL 88
++ILAPM +++L LL+ E+ D+ L TE R V+ LL F
Sbjct: 2 RVILAPMEGVLDSLVRELLS-----------EVNDYDLCITEFLRVVDQLLPAKSF---- 46
Query: 89 DGSVVFRTCPREKNKIILQIGT--------ADPERALE-AAKKVEHDVAAIDINMGCPKQ 139
+R CP N+ Q GT PE E AA+ V +D+N GCP +
Sbjct: 47 -----YRLCPELHNQSRTQSGTLVRIQLLGQYPEWLAENAARAVALGSYGVDLNCGCPSK 101
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEAD-TIALCKRLEACG 196
G GA LL P++ + + + +PV+ KIR+ + D + ++ G
Sbjct: 102 LVNGSGGGATLLKDPELIYQGAKAMRAAVPAHLPVTVKIRLGWDSGDRQFEIADAVQQAG 161
Query: 197 IIAIGVHGRTKAERPR-HRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
+ VHGRTK + + R + I + Q L IPVIANG EI DY
Sbjct: 162 ATELAVHGRTKEDGYQAERINWQAIGEIRQRLTIPVIANG---EIWDY 206
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,804,587
Number of Sequences: 539616
Number of extensions: 4391592
Number of successful extensions: 11891
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 11541
Number of HSP's gapped (non-prelim): 198
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)