Query psy4398
Match_columns 306
No_of_seqs 183 out of 1733
Neff 8.1
Searched_HMMs 46136
Date Sat Aug 17 00:29:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0042 tRNA-dihydrouridine sy 100.0 1.8E-46 3.9E-51 346.6 19.8 226 22-263 2-237 (323)
2 PRK10415 tRNA-dihydrouridine s 100.0 3.6E-45 7.8E-50 338.7 20.0 261 23-300 2-272 (321)
3 PRK10550 tRNA-dihydrouridine s 100.0 7.9E-44 1.7E-48 327.8 22.2 224 32-265 2-235 (312)
4 TIGR00737 nifR3_yhdG putative 100.0 5.5E-43 1.2E-47 324.7 23.2 236 24-276 1-243 (319)
5 TIGR00742 yjbN tRNA dihydrouri 100.0 7E-43 1.5E-47 322.1 22.3 216 31-264 1-233 (318)
6 PF01207 Dus: Dihydrouridine s 100.0 1.4E-43 3E-48 326.7 16.7 214 34-263 1-222 (309)
7 KOG2335|consensus 100.0 7.5E-43 1.6E-47 316.2 20.1 214 34-263 22-243 (358)
8 PRK11815 tRNA-dihydrouridine s 100.0 8.6E-42 1.9E-46 317.7 22.5 220 29-266 9-245 (333)
9 cd02801 DUS_like_FMN Dihydrour 100.0 1.5E-40 3.2E-45 294.8 21.4 219 32-266 1-225 (231)
10 TIGR01037 pyrD_sub1_fam dihydr 100.0 6.2E-40 1.3E-44 302.0 19.0 250 20-276 1-288 (300)
11 cd04740 DHOD_1B_like Dihydroor 100.0 6.9E-39 1.5E-43 294.5 18.9 260 21-300 1-295 (296)
12 PRK07259 dihydroorotate dehydr 100.0 1.7E-38 3.6E-43 292.6 19.8 252 20-277 2-289 (301)
13 PRK13523 NADPH dehydrogenase N 100.0 1.9E-36 4.1E-41 281.8 17.5 250 20-273 5-324 (337)
14 cd04734 OYE_like_3_FMN Old yel 100.0 3.1E-36 6.8E-41 281.6 16.6 259 20-285 3-343 (343)
15 COG1902 NemA NADH:flavin oxido 100.0 5.6E-36 1.2E-40 279.4 17.9 260 20-286 8-347 (363)
16 cd04739 DHOD_like Dihydroorota 100.0 1.2E-35 2.6E-40 275.7 17.5 257 20-284 2-301 (325)
17 PRK05286 dihydroorotate dehydr 100.0 2E-35 4.4E-40 276.2 18.9 256 14-276 42-344 (344)
18 PRK08318 dihydropyrimidine deh 100.0 3.8E-35 8.2E-40 281.8 20.4 260 20-284 4-317 (420)
19 cd04733 OYE_like_2_FMN Old yel 100.0 4.8E-35 1E-39 273.6 16.8 244 20-266 3-334 (338)
20 COG0167 PyrD Dihydroorotate de 100.0 6E-35 1.3E-39 265.2 16.7 260 20-301 2-307 (310)
21 cd02911 arch_FMN Archeal FMN-b 100.0 2.7E-34 5.9E-39 254.5 19.2 215 32-263 1-227 (233)
22 cd02940 DHPD_FMN Dihydropyrimi 100.0 4.7E-34 1E-38 262.5 21.3 241 20-264 2-292 (299)
23 cd02931 ER_like_FMN Enoate red 100.0 9.8E-35 2.1E-39 275.0 16.7 265 20-290 3-370 (382)
24 cd04735 OYE_like_4_FMN Old yel 100.0 1.7E-34 3.7E-39 271.1 17.3 263 20-289 3-345 (353)
25 cd02803 OYE_like_FMN_family Ol 100.0 1.2E-34 2.7E-39 269.8 14.7 244 20-266 2-323 (327)
26 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 2.6E-34 5.5E-39 270.1 16.0 265 20-291 3-342 (353)
27 PLN02495 oxidoreductase, actin 100.0 6.7E-34 1.4E-38 266.8 17.2 256 20-278 11-327 (385)
28 PRK07565 dihydroorotate dehydr 100.0 7.9E-34 1.7E-38 264.9 17.4 251 20-278 3-296 (334)
29 cd04747 OYE_like_5_FMN Old yel 100.0 5.4E-34 1.2E-38 266.8 16.2 247 20-270 3-344 (361)
30 PRK02506 dihydroorotate dehydr 100.0 2E-33 4.4E-38 259.1 17.3 261 20-300 2-306 (310)
31 cd02929 TMADH_HD_FMN Trimethyl 100.0 2.4E-33 5.2E-38 264.5 17.6 266 20-292 10-355 (370)
32 cd02932 OYE_YqiM_FMN Old yello 100.0 2E-33 4.4E-38 262.4 17.0 244 20-266 3-332 (336)
33 cd02933 OYE_like_FMN Old yello 100.0 3.2E-33 6.9E-38 260.6 17.8 240 20-266 4-326 (338)
34 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 6.1E-33 1.3E-37 254.2 18.9 240 22-266 1-285 (289)
35 cd04741 DHOD_1A_like Dihydroor 100.0 1.8E-32 4E-37 251.2 20.1 244 22-272 1-294 (294)
36 PRK08255 salicylyl-CoA 5-hydro 100.0 8.2E-33 1.8E-37 283.1 16.8 264 20-286 401-750 (765)
37 PF00724 Oxidored_FMN: NADH:fl 100.0 7.5E-34 1.6E-38 265.7 8.2 247 20-269 4-336 (341)
38 cd04738 DHOD_2_like Dihydrooro 100.0 3.7E-32 8E-37 252.8 19.0 240 20-266 39-322 (327)
39 PRK10605 N-ethylmaleimide redu 100.0 4.3E-32 9.4E-37 255.0 17.8 242 20-267 5-334 (362)
40 TIGR00736 nifR3_rel_arch TIM-b 100.0 3.5E-31 7.7E-36 232.7 17.4 212 38-261 1-227 (231)
41 PLN02826 dihydroorotate dehydr 100.0 3.7E-31 8E-36 250.6 17.0 250 20-276 74-396 (409)
42 TIGR01036 pyrD_sub2 dihydrooro 100.0 5.7E-30 1.2E-34 238.2 18.7 243 17-266 43-330 (335)
43 PLN02411 12-oxophytodienoate r 100.0 3.5E-30 7.7E-35 244.2 16.3 243 20-267 14-355 (391)
44 KOG2334|consensus 100.0 2.5E-29 5.5E-34 230.5 18.4 243 23-265 3-254 (477)
45 PF01180 DHO_dh: Dihydroorotat 100.0 1.2E-30 2.6E-35 239.7 9.6 248 19-272 1-295 (295)
46 KOG2333|consensus 100.0 5E-29 1.1E-33 231.4 15.8 231 20-266 254-498 (614)
47 KOG1436|consensus 99.9 1.4E-24 2.9E-29 192.9 15.4 273 7-300 69-396 (398)
48 cd02809 alpha_hydroxyacid_oxid 99.9 1.4E-21 3E-26 179.8 17.3 213 20-277 54-291 (299)
49 TIGR02151 IPP_isom_2 isopenten 99.9 2.5E-20 5.5E-25 173.7 17.5 250 14-302 36-329 (333)
50 PRK05437 isopentenyl pyrophosp 99.8 7.1E-19 1.5E-23 164.9 16.6 231 20-277 50-325 (352)
51 cd02811 IDI-2_FMN Isopentenyl- 99.8 1.3E-18 2.8E-23 161.8 15.3 232 20-278 42-319 (326)
52 TIGR01304 IMP_DH_rel_2 IMP deh 99.8 6.6E-18 1.4E-22 158.1 13.8 177 20-256 34-218 (369)
53 KOG1799|consensus 99.7 7E-17 1.5E-21 145.5 8.5 263 20-300 103-421 (471)
54 TIGR03151 enACPred_II putative 99.6 4.2E-14 9.1E-19 130.5 20.5 200 27-276 8-213 (307)
55 cd04730 NPD_like 2-Nitropropan 99.6 2.5E-13 5.5E-18 120.7 18.7 198 30-276 2-208 (236)
56 PRK14024 phosphoribosyl isomer 99.6 6.8E-14 1.5E-18 125.0 14.2 142 106-264 78-232 (241)
57 cd00381 IMPDH IMPDH: The catal 99.5 6.2E-13 1.4E-17 123.6 19.5 194 20-259 23-231 (325)
58 KOG0134|consensus 99.5 3.6E-14 7.9E-19 131.7 9.9 153 114-266 174-360 (400)
59 PRK08649 inosine 5-monophospha 99.5 1.7E-13 3.6E-18 128.9 13.2 175 20-256 37-217 (368)
60 cd04722 TIM_phosphate_binding 99.5 2.2E-12 4.7E-17 110.1 16.6 189 33-255 1-200 (200)
61 PRK05458 guanosine 5'-monophos 99.5 4.6E-12 1E-16 117.0 19.8 200 12-259 18-235 (326)
62 PRK01033 imidazole glycerol ph 99.5 1E-12 2.2E-17 118.5 15.2 157 106-278 77-257 (258)
63 COG0106 HisA Phosphoribosylfor 99.5 9.5E-13 2.1E-17 115.1 13.4 149 102-266 74-233 (241)
64 TIGR00735 hisF imidazoleglycer 99.4 2.1E-12 4.5E-17 116.3 14.3 147 117-279 87-253 (254)
65 cd04731 HisF The cyclase subun 99.4 2.3E-12 5.1E-17 115.2 13.5 144 116-275 83-243 (243)
66 cd04737 LOX_like_FMN L-Lactate 99.4 2.2E-12 4.7E-17 120.6 12.3 228 20-278 62-341 (351)
67 PRK04180 pyridoxal biosynthesi 99.4 2.4E-12 5.1E-17 115.2 11.5 132 117-259 27-239 (293)
68 TIGR01306 GMP_reduct_2 guanosi 99.4 7.9E-11 1.7E-15 108.4 18.8 202 12-257 15-230 (321)
69 PRK00748 1-(5-phosphoribosyl)- 99.3 7.1E-12 1.5E-16 111.2 11.5 140 106-261 77-227 (233)
70 PRK02083 imidazole glycerol ph 99.3 1.6E-11 3.6E-16 110.4 14.0 146 117-278 87-250 (253)
71 cd04732 HisA HisA. Phosphorib 99.3 1.1E-11 2.3E-16 110.1 12.7 141 106-262 76-227 (234)
72 PRK13585 1-(5-phosphoribosyl)- 99.3 9.9E-12 2.1E-16 110.9 12.4 143 106-264 79-232 (241)
73 cd02922 FCB2_FMN Flavocytochro 99.3 5.6E-11 1.2E-15 111.1 17.2 229 20-278 54-336 (344)
74 PF03060 NMO: Nitronate monoox 99.3 8.2E-11 1.8E-15 109.9 17.7 201 27-276 8-242 (330)
75 COG0107 HisF Imidazoleglycerol 99.3 5.1E-11 1.1E-15 102.7 14.5 155 110-279 80-253 (256)
76 PLN02446 (5-phosphoribosyl)-5- 99.3 5.6E-11 1.2E-15 106.1 15.1 155 102-274 82-259 (262)
77 TIGR03572 WbuZ glycosyl amidat 99.3 3.2E-11 6.8E-16 107.1 12.4 139 101-258 74-231 (232)
78 TIGR00007 phosphoribosylformim 99.3 4.8E-11 1E-15 105.8 12.6 140 106-261 75-225 (230)
79 TIGR02708 L_lactate_ox L-lacta 99.3 1.8E-10 3.9E-15 108.0 17.0 228 20-278 70-348 (367)
80 cd04743 NPD_PKS 2-Nitropropane 99.2 3.4E-10 7.4E-15 104.1 16.9 182 30-261 2-209 (320)
81 PRK06843 inosine 5-monophospha 99.2 1.9E-09 4.2E-14 102.1 19.6 216 20-259 31-290 (404)
82 PLN02535 glycolate oxidase 99.2 8.4E-10 1.8E-14 103.5 16.8 227 20-278 62-343 (364)
83 TIGR01919 hisA-trpF 1-(5-phosp 99.2 3.5E-10 7.6E-15 101.1 13.3 143 103-261 74-232 (243)
84 PRK14114 1-(5-phosphoribosyl)- 99.2 6.2E-10 1.3E-14 99.3 13.2 140 105-261 75-230 (241)
85 PF00977 His_biosynth: Histidi 99.1 2.7E-10 5.8E-15 101.0 9.9 142 103-260 73-226 (229)
86 TIGR02129 hisA_euk phosphoribo 99.1 1.1E-09 2.4E-14 97.5 12.8 139 103-259 76-237 (253)
87 PRK13587 1-(5-phosphoribosyl)- 99.1 1.1E-09 2.4E-14 97.3 12.1 138 106-259 79-226 (234)
88 COG2070 Dioxygenases related t 99.1 3.9E-09 8.4E-14 98.5 15.9 203 22-260 6-219 (336)
89 PRK13586 1-(5-phosphoribosyl)- 99.0 2.6E-09 5.6E-14 94.8 12.1 139 106-261 76-225 (232)
90 PF01070 FMN_dh: FMN-dependent 99.0 3.1E-09 6.7E-14 100.0 13.2 208 20-259 48-314 (356)
91 cd04736 MDH_FMN Mandelate dehy 99.0 6E-09 1.3E-13 97.6 14.9 208 20-259 54-323 (361)
92 PLN02979 glycolate oxidase 99.0 1.4E-08 2.9E-13 94.8 16.4 208 20-259 59-312 (366)
93 PLN02617 imidazole glycerol ph 99.0 6.1E-09 1.3E-13 102.5 14.7 157 117-279 338-536 (538)
94 PRK11197 lldD L-lactate dehydr 99.0 1.5E-08 3.3E-13 95.6 15.9 208 20-259 60-334 (381)
95 PRK13125 trpA tryptophan synth 99.0 1.1E-08 2.4E-13 91.6 13.3 144 110-259 14-219 (244)
96 cd02808 GltS_FMN Glutamate syn 99.0 1.8E-08 4E-13 96.1 15.2 104 152-258 196-318 (392)
97 PLN02493 probable peroxisomal 99.0 2.9E-08 6.3E-13 93.1 16.0 208 20-259 60-313 (367)
98 cd03332 LMO_FMN L-Lactate 2-mo 98.9 4.1E-08 9E-13 92.8 16.6 209 20-259 75-342 (383)
99 cd04728 ThiG Thiazole synthase 98.9 2.2E-07 4.7E-12 81.8 19.4 203 23-261 2-213 (248)
100 cd04742 NPD_FabD 2-Nitropropan 98.9 1.3E-07 2.7E-12 90.2 18.9 221 27-278 10-273 (418)
101 cd04723 HisA_HisF Phosphoribos 98.9 1.4E-08 2.9E-13 90.4 11.1 140 104-261 79-225 (233)
102 PRK00208 thiG thiazole synthas 98.8 8.9E-07 1.9E-11 78.1 20.3 203 22-261 2-213 (250)
103 PTZ00314 inosine-5'-monophosph 98.8 3.2E-07 7E-12 90.0 19.1 128 110-258 237-377 (495)
104 PF00478 IMPDH: IMP dehydrogen 98.8 1.5E-07 3.3E-12 87.8 15.8 198 25-257 32-243 (352)
105 cd03319 L-Ala-DL-Glu_epimerase 98.8 3.6E-07 7.9E-12 84.8 18.3 155 100-279 122-282 (316)
106 cd04731 HisF The cyclase subun 98.8 1.5E-08 3.3E-13 90.5 8.3 88 183-271 27-117 (243)
107 TIGR02814 pfaD_fam PfaD family 98.8 6.3E-07 1.4E-11 86.0 19.6 224 27-282 15-282 (444)
108 TIGR01305 GMP_reduct_1 guanosi 98.8 9.7E-07 2.1E-11 81.2 19.3 195 20-256 30-243 (343)
109 TIGR00734 hisAF_rel hisA/hisF 98.8 1.8E-07 3.8E-12 82.6 13.4 131 106-260 80-219 (221)
110 PF04131 NanE: Putative N-acet 98.8 8.6E-08 1.9E-12 81.1 10.8 119 116-258 54-177 (192)
111 PRK01130 N-acetylmannosamine-6 98.8 1.9E-07 4E-12 82.3 13.4 126 123-270 85-217 (221)
112 PRK05096 guanosine 5'-monophos 98.7 1.3E-06 2.7E-11 80.5 18.4 189 26-257 42-245 (346)
113 cd04729 NanE N-acetylmannosami 98.7 2.2E-07 4.8E-12 81.8 12.5 121 118-259 84-211 (219)
114 PRK02083 imidazole glycerol ph 98.7 4.5E-08 9.7E-13 88.1 7.7 83 183-266 30-115 (253)
115 TIGR00735 hisF imidazoleglycer 98.7 7.3E-08 1.6E-12 86.8 7.9 88 183-271 30-120 (254)
116 PRK00507 deoxyribose-phosphate 98.6 8.2E-07 1.8E-11 78.2 13.8 122 117-255 78-207 (221)
117 cd04727 pdxS PdxS is a subunit 98.6 1E-06 2.3E-11 79.0 14.4 198 40-276 14-249 (283)
118 cd03316 MR_like Mandelate race 98.6 2.7E-06 6E-11 80.2 16.7 158 101-278 126-293 (357)
119 TIGR00343 pyridoxal 5'-phospha 98.5 2.9E-06 6.2E-11 76.2 14.5 131 120-261 23-237 (287)
120 cd04724 Tryptophan_synthase_al 98.5 1.9E-06 4.1E-11 77.1 13.1 143 111-259 11-220 (242)
121 PF05690 ThiG: Thiazole biosyn 98.5 3E-05 6.5E-10 67.8 19.5 204 23-261 1-213 (247)
122 cd00945 Aldolase_Class_I Class 98.5 1.3E-05 2.8E-10 68.6 17.1 137 101-251 48-195 (201)
123 PRK04128 1-(5-phosphoribosyl)- 98.5 8E-07 1.7E-11 78.7 9.7 130 106-261 76-218 (228)
124 KOG0538|consensus 98.4 3E-05 6.5E-10 70.0 18.2 208 20-261 58-314 (363)
125 cd04732 HisA HisA. Phosphorib 98.4 6.8E-07 1.5E-11 79.2 7.9 83 183-266 29-114 (234)
126 TIGR01769 GGGP geranylgeranylg 98.4 1.5E-05 3.2E-10 69.3 15.5 120 114-250 11-198 (205)
127 TIGR03572 WbuZ glycosyl amidat 98.4 1.1E-06 2.5E-11 77.9 8.2 88 183-271 30-120 (232)
128 TIGR00262 trpA tryptophan synt 98.4 2.4E-05 5.3E-10 70.5 16.6 145 111-259 21-232 (256)
129 cd03315 MLE_like Muconate lact 98.3 5.1E-05 1.1E-09 68.6 18.0 153 101-279 74-234 (265)
130 TIGR01302 IMP_dehydrog inosine 98.3 1.5E-05 3.4E-10 77.5 15.3 127 111-258 221-360 (450)
131 PLN02274 inosine-5'-monophosph 98.3 1.8E-05 3.9E-10 77.9 15.6 128 110-259 244-385 (505)
132 CHL00162 thiG thiamin biosynth 98.3 0.0002 4.3E-09 63.4 19.7 206 21-261 7-227 (267)
133 PF04481 DUF561: Protein of un 98.3 1.7E-05 3.7E-10 68.2 12.7 143 101-257 61-217 (242)
134 TIGR01949 AroFGH_arch predicte 98.3 0.00011 2.5E-09 66.2 19.0 122 119-262 96-235 (258)
135 PRK13111 trpA tryptophan synth 98.3 2.1E-05 4.6E-10 70.9 13.9 143 111-259 23-233 (258)
136 COG0107 HisF Imidazoleglycerol 98.3 2.4E-06 5.2E-11 74.2 7.0 84 182-266 29-115 (256)
137 PRK00748 1-(5-phosphoribosyl)- 98.2 3.3E-06 7.2E-11 74.8 7.9 81 184-265 31-114 (233)
138 cd00331 IGPS Indole-3-glycerol 98.2 3.3E-05 7.2E-10 67.8 14.1 132 101-261 72-208 (217)
139 TIGR01163 rpe ribulose-phospha 98.2 2.2E-05 4.8E-10 68.2 12.8 137 106-261 3-200 (210)
140 TIGR00126 deoC deoxyribose-pho 98.2 5.5E-05 1.2E-09 66.1 15.1 127 115-255 72-203 (211)
141 PRK01033 imidazole glycerol ph 98.2 4.3E-06 9.2E-11 75.5 8.2 83 183-266 30-115 (258)
142 PRK14024 phosphoribosyl isomer 98.2 4.4E-06 9.4E-11 74.7 8.0 86 184-271 33-121 (241)
143 cd00958 DhnA Class I fructose- 98.2 0.00032 6.9E-09 62.3 19.2 86 168-262 121-222 (235)
144 TIGR03128 RuMP_HxlA 3-hexulose 98.1 0.00027 5.9E-09 61.3 17.4 145 103-271 54-202 (206)
145 cd00405 PRAI Phosphoribosylant 98.1 0.00016 3.5E-09 62.8 15.7 134 112-273 61-201 (203)
146 COG1304 idi Isopentenyl diphos 98.1 1.1E-05 2.5E-10 75.7 8.8 101 152-259 201-307 (360)
147 PF01645 Glu_synthase: Conserv 98.1 2.2E-05 4.7E-10 73.9 10.5 103 152-257 185-306 (368)
148 CHL00200 trpA tryptophan synth 98.1 4.3E-05 9.3E-10 69.1 12.0 151 104-258 17-235 (263)
149 cd00959 DeoC 2-deoxyribose-5-p 98.1 0.00013 2.9E-09 63.4 14.7 124 117-254 73-201 (203)
150 COG3010 NanE Putative N-acetyl 98.1 9.7E-05 2.1E-09 63.2 12.8 119 117-258 89-213 (229)
151 TIGR02129 hisA_euk phosphoribo 98.1 1.7E-05 3.6E-10 70.9 8.4 84 185-276 40-126 (253)
152 PRK06806 fructose-bisphosphate 98.1 0.00015 3.3E-09 66.2 14.7 159 99-275 72-248 (281)
153 TIGR01768 GGGP-family geranylg 98.0 9.1E-05 2E-09 65.1 12.5 52 211-262 161-216 (223)
154 TIGR00259 thylakoid_BtpA membr 98.0 0.00019 4E-09 64.5 14.5 199 51-274 38-251 (257)
155 PRK07695 transcriptional regul 98.0 0.00013 2.7E-09 63.4 12.9 144 103-259 28-182 (201)
156 PRK13587 1-(5-phosphoribosyl)- 98.0 1.6E-05 3.5E-10 70.7 7.3 82 184-266 32-117 (234)
157 PRK08649 inosine 5-monophospha 98.0 7.7E-05 1.7E-09 70.6 12.0 131 112-259 139-290 (368)
158 PRK04128 1-(5-phosphoribosyl)- 98.0 1.9E-05 4.1E-10 70.0 7.4 79 184-266 31-113 (228)
159 PRK07807 inosine 5-monophospha 98.0 0.00012 2.5E-09 71.7 13.4 116 122-259 235-364 (479)
160 PRK00278 trpC indole-3-glycero 98.0 0.00046 1E-08 62.4 16.1 144 101-262 49-248 (260)
161 PF03437 BtpA: BtpA family; I 98.0 0.00024 5.3E-09 63.6 14.0 186 51-260 39-233 (254)
162 PRK07226 fructose-bisphosphate 98.0 0.00036 7.7E-09 63.4 15.4 121 120-262 100-239 (267)
163 PLN02591 tryptophan synthase 98.0 0.00024 5.2E-09 63.7 14.0 145 111-259 13-223 (250)
164 TIGR01303 IMP_DH_rel_1 IMP deh 97.9 0.00011 2.3E-09 72.0 12.2 120 116-257 227-360 (475)
165 cd00429 RPE Ribulose-5-phospha 97.9 0.00012 2.7E-09 63.5 11.4 143 104-262 2-202 (211)
166 KOG0623|consensus 97.9 3.8E-05 8.2E-10 70.2 8.1 95 184-279 442-539 (541)
167 PRK08883 ribulose-phosphate 3- 97.9 0.00022 4.7E-09 62.9 12.8 138 105-262 3-203 (220)
168 PRK05567 inosine 5'-monophosph 97.9 0.00026 5.7E-09 69.6 14.5 126 112-258 226-364 (486)
169 COG0274 DeoC Deoxyribose-phosp 97.9 0.00057 1.2E-08 59.6 14.2 126 116-255 80-211 (228)
170 PRK11840 bifunctional sulfur c 97.9 0.0047 1E-07 57.0 20.9 205 20-261 73-287 (326)
171 PRK04169 geranylgeranylglycery 97.9 0.0004 8.8E-09 61.5 13.5 126 122-262 28-221 (232)
172 COG2022 ThiG Uncharacterized e 97.9 0.0033 7.1E-08 54.9 18.4 205 21-261 7-220 (262)
173 PLN02334 ribulose-phosphate 3- 97.9 0.00037 8E-09 61.8 13.2 136 102-262 66-210 (229)
174 COG0159 TrpA Tryptophan syntha 97.8 0.00099 2.1E-08 59.8 15.5 148 110-259 27-238 (265)
175 PRK13585 1-(5-phosphoribosyl)- 97.8 5.8E-05 1.3E-09 67.2 7.6 79 184-263 33-114 (241)
176 PF00977 His_biosynth: Histidi 97.8 1.9E-05 4.1E-10 70.1 4.4 83 183-266 29-114 (229)
177 cd04723 HisA_HisF Phosphoribos 97.8 8.5E-05 1.8E-09 66.1 8.5 86 183-271 35-123 (233)
178 TIGR01304 IMP_DH_rel_2 IMP deh 97.8 0.00016 3.6E-09 68.3 10.7 130 113-258 141-288 (369)
179 PRK06801 hypothetical protein; 97.8 0.00082 1.8E-08 61.5 14.9 144 100-258 73-237 (286)
180 PRK05581 ribulose-phosphate 3- 97.8 0.00039 8.5E-09 60.9 12.5 143 104-262 6-206 (220)
181 PRK07107 inosine 5-monophospha 97.8 0.00027 5.8E-09 69.6 12.4 123 116-257 244-384 (502)
182 PRK13307 bifunctional formalde 97.8 0.0015 3.2E-08 62.3 16.8 154 102-283 227-386 (391)
183 PRK05283 deoxyribose-phosphate 97.8 0.0006 1.3E-08 61.1 13.4 136 115-265 85-232 (257)
184 PTZ00170 D-ribulose-5-phosphat 97.8 0.00066 1.4E-08 60.2 13.6 140 103-262 8-209 (228)
185 PRK14114 1-(5-phosphoribosyl)- 97.8 9.9E-05 2.1E-09 65.9 7.9 80 183-264 30-112 (241)
186 PRK13586 1-(5-phosphoribosyl)- 97.8 0.00012 2.5E-09 65.1 8.2 81 184-266 31-114 (232)
187 cd00452 KDPG_aldolase KDPG and 97.7 0.00092 2E-08 57.5 13.5 141 102-258 4-175 (190)
188 PRK07998 gatY putative fructos 97.7 0.00059 1.3E-08 62.2 12.8 144 99-257 72-232 (283)
189 TIGR01859 fruc_bis_ald_ fructo 97.7 0.00086 1.9E-08 61.3 13.9 142 102-258 75-234 (282)
190 cd03329 MR_like_4 Mandelate ra 97.7 0.0021 4.5E-08 61.0 17.1 145 112-280 143-296 (368)
191 TIGR00007 phosphoribosylformim 97.7 0.00012 2.6E-09 64.8 8.1 77 184-261 29-108 (230)
192 PLN02446 (5-phosphoribosyl)-5- 97.7 8.1E-05 1.8E-09 66.8 6.6 88 183-276 43-133 (262)
193 PRK07315 fructose-bisphosphate 97.7 0.0011 2.3E-08 61.0 14.0 143 101-259 77-237 (293)
194 PRK08185 hypothetical protein; 97.7 0.0017 3.7E-08 59.3 14.5 137 100-251 67-222 (283)
195 cd04726 KGPDC_HPS 3-Keto-L-gul 97.7 0.0027 5.9E-08 54.8 15.3 136 101-261 53-193 (202)
196 TIGR01919 hisA-trpF 1-(5-phosp 97.7 0.00017 3.7E-09 64.5 7.9 81 184-266 32-115 (243)
197 COG0106 HisA Phosphoribosylfor 97.6 0.00018 3.9E-09 63.5 7.6 89 183-276 31-122 (241)
198 PRK07709 fructose-bisphosphate 97.6 0.0015 3.1E-08 59.8 13.8 136 102-251 78-227 (285)
199 PRK09140 2-dehydro-3-deoxy-6-p 97.6 0.0031 6.8E-08 55.0 15.2 143 102-260 10-185 (206)
200 PF01791 DeoC: DeoC/LacD famil 97.6 0.00025 5.5E-09 63.1 8.4 130 116-258 79-234 (236)
201 cd00377 ICL_PEPM Members of th 97.6 0.0032 6.8E-08 56.4 15.1 185 31-235 8-203 (243)
202 PRK08610 fructose-bisphosphate 97.6 0.0022 4.7E-08 58.6 13.8 136 102-251 78-227 (286)
203 PRK07028 bifunctional hexulose 97.6 0.0023 5E-08 62.0 14.8 117 124-263 79-199 (430)
204 PRK09195 gatY tagatose-bisphos 97.5 0.0029 6.2E-08 57.8 14.3 138 100-251 73-226 (284)
205 PRK12738 kbaY tagatose-bisphos 97.5 0.0034 7.5E-08 57.3 14.5 139 99-251 72-226 (286)
206 PRK12737 gatY tagatose-bisphos 97.5 0.0033 7.1E-08 57.5 14.3 138 100-251 73-226 (284)
207 COG0434 SgcQ Predicted TIM-bar 97.5 0.0021 4.6E-08 56.3 12.3 187 51-260 44-238 (263)
208 TIGR01858 tag_bisphos_ald clas 97.5 0.0033 7.2E-08 57.3 14.1 138 100-251 71-224 (282)
209 PLN02617 imidazole glycerol ph 97.5 0.00021 4.6E-09 70.8 6.6 79 183-261 267-361 (538)
210 cd00947 TBP_aldolase_IIB Tagat 97.5 0.0031 6.7E-08 57.4 13.3 137 100-251 68-220 (276)
211 PRK12857 fructose-1,6-bisphosp 97.4 0.0045 9.7E-08 56.6 14.3 138 100-251 73-226 (284)
212 PF00290 Trp_syntA: Tryptophan 97.4 0.00083 1.8E-08 60.5 9.2 145 111-259 21-231 (259)
213 KOG2550|consensus 97.4 0.0045 9.8E-08 58.3 14.0 95 156-257 278-386 (503)
214 TIGR00167 cbbA ketose-bisphosp 97.4 0.0043 9.3E-08 56.8 13.8 137 101-251 77-230 (288)
215 COG0069 GltB Glutamate synthas 97.4 0.0011 2.5E-08 64.1 10.4 94 153-249 286-395 (485)
216 cd06556 ICL_KPHMT Members of t 97.4 0.006 1.3E-07 54.5 14.2 161 40-236 18-199 (240)
217 cd03321 mandelate_racemase Man 97.4 0.0066 1.4E-07 57.4 15.2 153 102-279 131-291 (355)
218 COG1646 Predicted phosphate-bi 97.4 0.004 8.7E-08 54.5 12.2 130 116-261 30-227 (240)
219 PRK05835 fructose-bisphosphate 97.4 0.0058 1.2E-07 56.3 13.9 126 102-241 75-217 (307)
220 cd02812 PcrB_like PcrB_like pr 97.3 0.00087 1.9E-08 58.8 7.9 77 180-262 132-212 (219)
221 PRK06552 keto-hydroxyglutarate 97.3 0.0037 8.1E-08 54.8 11.9 143 102-259 13-188 (213)
222 cd00408 DHDPS-like Dihydrodipi 97.3 0.0068 1.5E-07 55.2 13.8 127 110-248 14-149 (281)
223 TIGR01182 eda Entner-Doudoroff 97.2 0.0055 1.2E-07 53.3 11.8 145 102-260 8-182 (204)
224 PRK13397 3-deoxy-7-phosphohept 97.2 0.049 1.1E-06 48.8 17.8 176 22-234 6-190 (250)
225 PRK09196 fructose-1,6-bisphosp 97.2 0.0069 1.5E-07 56.7 12.7 130 102-239 76-237 (347)
226 cd00564 TMP_TenI Thiamine mono 97.2 0.0026 5.6E-08 54.1 9.4 75 187-262 106-186 (196)
227 PRK07084 fructose-bisphosphate 97.2 0.01 2.2E-07 55.0 13.6 137 101-251 85-262 (321)
228 COG0214 SNZ1 Pyridoxine biosyn 97.2 0.0098 2.1E-07 52.1 12.6 130 119-259 32-242 (296)
229 TIGR01521 FruBisAldo_II_B fruc 97.2 0.0084 1.8E-07 56.0 13.2 142 102-251 74-269 (347)
230 COG0352 ThiE Thiamine monophos 97.2 0.0081 1.8E-07 52.5 12.2 90 168-263 101-195 (211)
231 PRK00043 thiE thiamine-phospha 97.2 0.0031 6.8E-08 54.7 9.7 73 189-262 117-196 (212)
232 COG0036 Rpe Pentose-5-phosphat 97.2 0.014 2.9E-07 51.1 13.3 141 102-262 4-205 (220)
233 PRK06512 thiamine-phosphate py 97.2 0.0067 1.4E-07 53.5 11.7 72 189-261 124-199 (221)
234 PF01116 F_bP_aldolase: Fructo 97.1 0.0075 1.6E-07 55.3 12.2 138 100-251 72-229 (287)
235 PRK08005 epimerase; Validated 97.1 0.022 4.8E-07 49.8 14.4 143 104-262 3-199 (210)
236 PRK07455 keto-hydroxyglutarate 97.1 0.019 4.1E-07 49.3 13.8 142 102-259 12-185 (187)
237 PRK13399 fructose-1,6-bisphosp 97.1 0.011 2.4E-07 55.3 13.1 143 102-251 76-271 (347)
238 COG1830 FbaB DhnA-type fructos 97.1 0.048 1E-06 48.9 16.2 138 101-261 77-244 (265)
239 PRK11750 gltB glutamate syntha 97.1 0.007 1.5E-07 65.6 12.8 94 153-250 979-1089(1485)
240 COG0191 Fba Fructose/tagatose 97.1 0.029 6.2E-07 50.9 14.9 101 150-251 111-228 (286)
241 cd03326 MR_like_1 Mandelate ra 97.1 0.023 4.9E-07 54.4 15.2 144 112-278 160-313 (385)
242 TIGR00734 hisAF_rel hisA/hisF 97.0 0.0018 3.9E-08 57.1 6.9 77 183-263 36-117 (221)
243 PRK08745 ribulose-phosphate 3- 97.0 0.036 7.9E-07 48.9 14.7 139 104-262 6-207 (223)
244 cd04727 pdxS PdxS is a subunit 97.0 0.012 2.6E-07 53.1 11.6 119 120-258 21-141 (283)
245 cd03325 D-galactonate_dehydrat 97.0 0.049 1.1E-06 51.4 16.5 162 102-280 113-282 (352)
246 PRK06015 keto-hydroxyglutarate 97.0 0.017 3.8E-07 50.0 12.1 143 102-258 4-176 (201)
247 PRK12858 tagatose 1,6-diphosph 96.9 0.02 4.3E-07 53.7 13.2 146 121-278 113-305 (340)
248 PRK14017 galactonate dehydrata 96.9 0.057 1.2E-06 51.5 16.5 162 102-280 114-283 (382)
249 COG4948 L-alanine-DL-glutamate 96.9 0.034 7.3E-07 52.8 14.7 116 112-250 143-261 (372)
250 TIGR02317 prpB methylisocitrat 96.9 0.055 1.2E-06 49.5 15.3 185 27-233 8-202 (285)
251 PRK02615 thiamine-phosphate py 96.9 0.012 2.6E-07 55.3 11.1 72 188-260 252-328 (347)
252 TIGR02320 PEP_mutase phosphoen 96.9 0.14 3.1E-06 46.8 17.9 126 99-235 76-218 (285)
253 cd00950 DHDPS Dihydrodipicolin 96.9 0.026 5.6E-07 51.5 13.1 126 111-248 18-152 (284)
254 cd03328 MR_like_3 Mandelate ra 96.8 0.044 9.4E-07 51.8 15.0 142 112-281 138-291 (352)
255 PRK00311 panB 3-methyl-2-oxobu 96.8 0.027 6E-07 50.9 12.8 158 40-236 21-204 (264)
256 cd00952 CHBPH_aldolase Trans-o 96.8 0.024 5.2E-07 52.6 12.8 111 111-233 26-140 (309)
257 COG0329 DapA Dihydrodipicolina 96.8 0.025 5.4E-07 52.2 12.8 123 111-248 22-156 (299)
258 cd03322 rpsA The starvation se 96.8 0.079 1.7E-06 50.2 16.4 145 103-280 117-269 (361)
259 cd06557 KPHMT-like Ketopantoat 96.8 0.12 2.5E-06 46.6 16.5 159 40-236 18-201 (254)
260 cd00951 KDGDH 5-dehydro-4-deox 96.8 0.026 5.7E-07 51.8 12.5 125 111-248 18-148 (289)
261 PRK03620 5-dehydro-4-deoxygluc 96.8 0.027 5.8E-07 52.1 12.5 124 111-247 25-154 (303)
262 TIGR03249 KdgD 5-dehydro-4-deo 96.7 0.029 6.4E-07 51.6 12.6 125 111-248 23-153 (296)
263 PRK05718 keto-hydroxyglutarate 96.7 0.018 3.9E-07 50.5 10.5 142 102-258 15-186 (212)
264 PRK11320 prpB 2-methylisocitra 96.7 0.099 2.1E-06 48.0 15.7 189 25-233 10-207 (292)
265 PRK06852 aldolase; Validated 96.7 0.26 5.6E-06 45.5 18.2 101 157-262 156-273 (304)
266 PRK13813 orotidine 5'-phosphat 96.7 0.077 1.7E-06 46.3 14.4 142 103-262 5-200 (215)
267 PRK08227 autoinducer 2 aldolas 96.7 0.027 5.9E-07 50.9 11.6 138 101-261 74-233 (264)
268 cd03327 MR_like_2 Mandelate ra 96.7 0.14 3.1E-06 48.0 17.0 160 102-281 109-278 (341)
269 PRK15072 bifunctional D-altron 96.7 0.12 2.6E-06 49.8 16.8 165 108-280 123-312 (404)
270 PRK07114 keto-hydroxyglutarate 96.7 0.1 2.3E-06 45.9 15.0 139 102-260 15-194 (222)
271 PF01081 Aldolase: KDPG and KH 96.7 0.013 2.9E-07 50.5 9.1 140 102-259 8-181 (196)
272 cd00954 NAL N-Acetylneuraminic 96.6 0.074 1.6E-06 48.7 14.1 126 111-248 18-154 (288)
273 TIGR00674 dapA dihydrodipicoli 96.6 0.053 1.1E-06 49.6 13.1 126 111-248 16-150 (285)
274 cd03324 rTSbeta_L-fuconate_deh 96.6 0.078 1.7E-06 51.2 14.7 144 110-279 194-348 (415)
275 PRK03170 dihydrodipicolinate s 96.6 0.069 1.5E-06 49.0 13.7 126 111-248 19-153 (292)
276 TIGR00222 panB 3-methyl-2-oxob 96.5 0.063 1.4E-06 48.4 12.6 95 112-236 90-203 (263)
277 PRK07565 dihydroorotate dehydr 96.5 0.045 9.8E-07 51.3 12.2 94 154-248 86-187 (334)
278 TIGR02319 CPEP_Pphonmut carbox 96.4 0.2 4.3E-06 46.1 15.7 139 99-250 75-226 (294)
279 COG0135 TrpF Phosphoribosylant 96.4 0.25 5.3E-06 43.1 15.5 123 110-261 61-190 (208)
280 cd03318 MLE Muconate Lactonizi 96.4 0.33 7.1E-06 46.0 17.7 153 102-279 132-293 (365)
281 PF02581 TMP-TENI: Thiamine mo 96.4 0.0086 1.9E-07 50.9 6.2 61 189-251 108-171 (180)
282 PRK09197 fructose-bisphosphate 96.4 0.067 1.4E-06 50.1 12.5 141 99-251 90-273 (350)
283 PLN02424 ketopantoate hydroxym 96.4 0.083 1.8E-06 49.0 12.7 165 32-236 36-225 (332)
284 PF00701 DHDPS: Dihydrodipicol 96.4 0.062 1.4E-06 49.1 12.1 125 112-248 20-153 (289)
285 TIGR00693 thiE thiamine-phosph 96.3 0.019 4.1E-07 49.3 8.2 70 190-260 110-186 (196)
286 PRK04147 N-acetylneuraminate l 96.3 0.075 1.6E-06 48.8 12.5 126 111-248 21-156 (293)
287 TIGR00683 nanA N-acetylneurami 96.3 0.14 3E-06 47.0 14.0 123 111-248 18-154 (290)
288 PLN02274 inosine-5'-monophosph 96.3 0.14 3.1E-06 50.7 14.9 64 183-251 247-311 (505)
289 TIGR02313 HpaI-NOT-DapA 2,4-di 96.3 0.13 2.9E-06 47.3 13.8 127 111-247 18-152 (294)
290 cd00945 Aldolase_Class_I Class 96.3 0.046 9.9E-07 46.4 10.1 110 112-246 11-134 (201)
291 cd00953 KDG_aldolase KDG (2-ke 96.3 0.17 3.8E-06 46.1 14.5 125 110-248 16-147 (279)
292 COG0134 TrpC Indole-3-glycerol 96.3 0.15 3.3E-06 45.7 13.5 130 119-263 71-245 (254)
293 PRK11572 copper homeostasis pr 96.2 0.071 1.5E-06 47.6 11.1 146 124-286 19-199 (248)
294 KOG1606|consensus 96.2 0.054 1.2E-06 46.8 9.9 131 120-261 34-245 (296)
295 PRK01222 N-(5'-phosphoribosyl) 96.2 0.53 1.1E-05 41.1 16.4 120 110-258 63-187 (210)
296 cd03320 OSBS o-Succinylbenzoat 96.2 0.3 6.4E-06 44.1 15.4 151 101-278 72-229 (263)
297 PF00834 Ribul_P_3_epim: Ribul 96.1 0.013 2.7E-07 51.0 5.9 136 104-259 2-199 (201)
298 PF02548 Pantoate_transf: Keto 96.1 0.12 2.6E-06 46.4 12.3 160 40-236 22-205 (261)
299 PRK04302 triosephosphate isome 96.1 0.11 2.3E-06 45.8 12.0 124 120-264 78-212 (223)
300 PRK08999 hypothetical protein; 96.1 0.028 6E-07 52.0 8.6 62 189-251 239-302 (312)
301 TIGR01302 IMP_dehydrog inosine 96.1 0.39 8.4E-06 47.0 16.8 63 184-251 224-287 (450)
302 cd00453 FTBP_aldolase_II Fruct 96.1 0.11 2.5E-06 48.3 12.3 141 99-251 83-266 (340)
303 PRK09250 fructose-bisphosphate 96.1 0.8 1.7E-05 42.9 17.8 131 122-264 155-328 (348)
304 PF04131 NanE: Putative N-acet 96.0 0.095 2.1E-06 44.8 10.6 113 117-258 2-121 (192)
305 PRK03512 thiamine-phosphate py 96.0 0.057 1.2E-06 47.3 9.5 72 189-261 115-193 (211)
306 PRK09722 allulose-6-phosphate 96.0 0.27 5.9E-06 43.5 13.7 141 103-259 4-203 (229)
307 TIGR01182 eda Entner-Doudoroff 96.0 0.13 2.9E-06 44.7 11.5 95 171-278 9-103 (204)
308 PF03932 CutC: CutC family; I 95.9 0.053 1.2E-06 47.0 8.7 96 124-236 18-122 (201)
309 PRK08091 ribulose-phosphate 3- 95.9 0.34 7.4E-06 42.9 14.0 139 102-262 13-215 (228)
310 PF00218 IGPS: Indole-3-glycer 95.9 0.12 2.7E-06 46.4 11.4 114 125-264 130-248 (254)
311 PF13714 PEP_mutase: Phosphoen 95.9 0.2 4.4E-06 44.6 12.6 195 30-251 7-213 (238)
312 PRK06015 keto-hydroxyglutarate 95.8 0.15 3.2E-06 44.2 11.3 73 171-251 5-77 (201)
313 cd02809 alpha_hydroxyacid_oxid 95.8 0.21 4.5E-06 46.1 13.0 80 169-251 115-194 (299)
314 COG5016 Pyruvate/oxaloacetate 95.8 0.58 1.2E-05 44.5 15.5 128 113-257 96-232 (472)
315 PLN02858 fructose-bisphosphate 95.8 0.17 3.6E-06 56.0 14.0 102 149-251 1204-1325(1378)
316 PRK13957 indole-3-glycerol-pho 95.7 0.46 1E-05 42.5 14.2 131 103-262 104-238 (247)
317 TIGR01361 DAHP_synth_Bsub phos 95.7 0.8 1.7E-05 41.4 16.0 116 93-233 81-199 (260)
318 PRK05718 keto-hydroxyglutarate 95.7 0.32 6.9E-06 42.6 13.0 82 159-251 7-88 (212)
319 TIGR02534 mucon_cyclo muconate 95.7 0.56 1.2E-05 44.5 15.7 125 102-249 131-259 (368)
320 PRK12290 thiE thiamine-phospha 95.7 0.075 1.6E-06 51.2 9.5 72 189-261 313-399 (437)
321 PRK14057 epimerase; Provisiona 95.6 0.42 9.1E-06 42.9 13.6 154 101-276 19-245 (254)
322 cd03323 D-glucarate_dehydratas 95.6 0.28 6.2E-06 47.0 13.3 113 112-250 168-283 (395)
323 PRK05848 nicotinate-nucleotide 95.6 0.11 2.5E-06 47.2 10.0 85 157-259 168-262 (273)
324 COG0413 PanB Ketopantoate hydr 95.6 0.25 5.3E-06 44.2 11.7 97 110-236 89-204 (268)
325 cd08205 RuBisCO_IV_RLP Ribulos 95.6 0.25 5.3E-06 47.0 12.6 97 100-204 128-231 (367)
326 PLN02417 dihydrodipicolinate s 95.5 0.34 7.4E-06 44.2 13.1 124 111-248 19-151 (280)
327 PF01081 Aldolase: KDPG and KH 95.5 0.14 3.1E-06 44.2 9.9 73 171-251 9-81 (196)
328 PRK07114 keto-hydroxyglutarate 95.5 0.36 7.7E-06 42.6 12.4 82 159-251 7-92 (222)
329 TIGR03569 NeuB_NnaB N-acetylne 95.5 0.54 1.2E-05 44.0 14.2 99 147-251 116-217 (329)
330 cd03317 NAAAR N-acylamino acid 95.5 0.63 1.4E-05 43.8 15.0 118 102-249 126-249 (354)
331 PRK06552 keto-hydroxyglutarate 95.5 0.39 8.5E-06 42.1 12.6 81 160-251 6-89 (213)
332 TIGR01927 menC_gamma/gm+ o-suc 95.4 0.99 2.1E-05 41.7 15.9 148 104-279 103-260 (307)
333 COG0269 SgbH 3-hexulose-6-phos 95.4 1 2.2E-05 39.3 14.6 135 102-259 57-197 (217)
334 TIGR01520 FruBisAldo_II_A fruc 95.3 0.46 9.9E-06 44.7 13.3 141 99-251 97-281 (357)
335 PF01487 DHquinase_I: Type I 3 95.3 0.26 5.7E-06 43.3 11.3 87 106-204 2-96 (224)
336 cd08210 RLP_RrRLP Ribulose bis 95.3 0.4 8.6E-06 45.5 12.9 94 100-203 124-225 (364)
337 TIGR03247 glucar-dehydr glucar 95.3 0.57 1.2E-05 45.7 14.3 143 112-281 180-334 (441)
338 cd00331 IGPS Indole-3-glycerol 95.2 0.066 1.4E-06 46.8 7.1 73 182-258 30-105 (217)
339 cd02810 DHOD_DHPD_FMN Dihydroo 95.2 1.3 2.8E-05 40.4 15.8 93 155-248 83-183 (289)
340 PF09370 TIM-br_sig_trns: TIM- 95.2 0.19 4.1E-06 45.2 9.8 138 101-249 81-236 (268)
341 PRK00366 ispG 4-hydroxy-3-meth 95.1 1.9 4.2E-05 40.4 16.5 169 20-232 13-205 (360)
342 TIGR02321 Pphn_pyruv_hyd phosp 95.1 2.6 5.7E-05 38.7 17.5 197 30-246 13-226 (290)
343 PRK12595 bifunctional 3-deoxy- 95.1 0.48 1E-05 44.9 12.8 117 92-233 173-292 (360)
344 PLN02898 HMP-P kinase/thiamin- 95.0 0.24 5.2E-06 49.0 11.0 70 189-259 403-480 (502)
345 cd00946 FBP_aldolase_IIA Class 95.0 0.53 1.1E-05 44.2 12.5 141 99-251 85-269 (345)
346 TIGR03586 PseI pseudaminic aci 94.9 1 2.3E-05 42.0 14.4 82 148-235 118-200 (327)
347 PRK08072 nicotinate-nucleotide 94.9 0.21 4.5E-06 45.6 9.5 86 157-258 174-264 (277)
348 COG0800 Eda 2-keto-3-deoxy-6-p 94.9 0.27 5.8E-06 42.8 9.7 73 171-251 14-86 (211)
349 PRK09517 multifunctional thiam 94.9 0.34 7.3E-06 50.5 12.2 65 195-260 127-200 (755)
350 cd00381 IMPDH IMPDH: The catal 94.8 0.2 4.3E-06 46.9 9.4 87 155-251 70-157 (325)
351 PRK02901 O-succinylbenzoate sy 94.7 1.6 3.6E-05 40.8 15.3 123 103-249 80-205 (327)
352 PRK13802 bifunctional indole-3 94.7 0.71 1.5E-05 47.4 13.8 120 125-271 132-256 (695)
353 PRK07428 nicotinate-nucleotide 94.7 0.28 6E-06 45.0 9.7 88 157-259 182-276 (288)
354 TIGR00284 dihydropteroate synt 94.7 0.6 1.3E-05 46.1 12.6 128 104-261 154-287 (499)
355 PRK02714 O-succinylbenzoate sy 94.6 1.3 2.8E-05 41.2 14.4 139 114-278 120-267 (320)
356 PRK15440 L-rhamnonate dehydrat 94.6 0.36 7.8E-06 46.3 10.8 136 125-282 171-318 (394)
357 PF01884 PcrB: PcrB family; I 94.6 0.037 8.1E-07 48.9 3.7 79 181-262 137-219 (230)
358 TIGR01928 menC_lowGC/arch o-su 94.6 1.3 2.8E-05 41.3 14.2 148 102-279 122-277 (324)
359 TIGR02151 IPP_isom_2 isopenten 94.6 0.44 9.6E-06 44.6 11.1 102 149-251 93-204 (333)
360 TIGR00612 ispG_gcpE 1-hydroxy- 94.6 3.2 6.9E-05 38.7 16.2 167 21-232 6-196 (346)
361 TIGR00078 nadC nicotinate-nucl 94.5 0.33 7.1E-06 44.0 9.8 81 157-255 164-251 (265)
362 PRK02412 aroD 3-dehydroquinate 94.5 1.7 3.8E-05 39.0 14.5 90 103-203 17-116 (253)
363 COG4981 Enoyl reductase domain 94.5 1.8 3.9E-05 42.7 15.0 198 20-259 24-258 (717)
364 COG1411 Uncharacterized protei 94.5 0.16 3.5E-06 43.6 7.1 93 168-261 120-217 (229)
365 PRK13396 3-deoxy-7-phosphohept 94.4 0.79 1.7E-05 43.2 12.3 115 95-234 159-277 (352)
366 PRK12457 2-dehydro-3-deoxyphos 94.3 0.62 1.3E-05 42.2 10.9 111 98-233 84-196 (281)
367 cd01572 QPRTase Quinolinate ph 94.3 0.33 7.1E-06 44.1 9.3 83 158-258 169-258 (268)
368 PRK13958 N-(5'-phosphoribosyl) 94.3 3.1 6.7E-05 36.2 15.1 108 110-248 61-171 (207)
369 PTZ00314 inosine-5'-monophosph 94.3 0.23 4.9E-06 49.1 8.8 63 184-251 241-304 (495)
370 KOG2334|consensus 94.2 0.033 7.1E-07 52.8 2.7 110 130-242 290-399 (477)
371 COG3142 CutC Uncharacterized p 94.2 0.46 1E-05 41.7 9.6 138 125-276 20-193 (241)
372 PRK05437 isopentenyl pyrophosp 94.2 0.46 9.9E-06 44.9 10.4 102 149-251 100-211 (352)
373 cd06556 ICL_KPHMT Members of t 94.2 1 2.2E-05 40.2 12.0 106 120-237 25-134 (240)
374 PLN02979 glycolate oxidase 94.1 0.7 1.5E-05 43.7 11.3 82 169-251 120-245 (366)
375 cd04740 DHOD_1B_like Dihydroor 94.1 1.6 3.4E-05 40.0 13.5 72 161-233 81-159 (296)
376 PRK05742 nicotinate-nucleotide 94.1 0.52 1.1E-05 43.0 10.1 62 186-258 199-265 (277)
377 PF00478 IMPDH: IMP dehydrogen 94.1 0.18 4E-06 47.4 7.3 75 171-251 96-171 (352)
378 cd00739 DHPS DHPS subgroup of 94.0 0.83 1.8E-05 41.2 11.2 103 112-234 22-126 (257)
379 PRK13398 3-deoxy-7-phosphohept 94.0 1.2 2.6E-05 40.4 12.2 116 93-233 83-201 (266)
380 cd01568 QPRTase_NadC Quinolina 93.9 0.48 1E-05 43.1 9.5 84 159-260 169-261 (269)
381 PLN02535 glycolate oxidase 93.8 0.68 1.5E-05 43.9 10.7 82 169-251 123-245 (364)
382 TIGR03849 arch_ComA phosphosul 93.8 1.4 3.1E-05 39.1 12.1 102 114-228 71-184 (237)
383 PRK07535 methyltetrahydrofolat 93.8 0.8 1.7E-05 41.4 10.8 96 111-233 22-121 (261)
384 COG2513 PrpB PEP phosphonomuta 93.8 1.8 3.8E-05 39.5 12.8 200 24-245 10-225 (289)
385 cd00423 Pterin_binding Pterin 93.8 0.95 2.1E-05 40.8 11.2 104 111-234 21-126 (258)
386 PF01680 SOR_SNZ: SOR/SNZ fami 93.8 0.25 5.4E-06 41.7 6.7 74 119-203 26-100 (208)
387 PLN02363 phosphoribosylanthran 93.7 4.5 9.8E-05 36.5 15.4 84 103-204 46-130 (256)
388 cd04739 DHOD_like Dihydroorota 93.7 0.7 1.5E-05 43.1 10.5 91 155-246 85-183 (325)
389 PRK12399 tagatose 1,6-diphosph 93.6 0.77 1.7E-05 42.5 10.3 152 120-278 111-304 (324)
390 PLN02493 probable peroxisomal 93.6 0.96 2.1E-05 42.9 11.3 37 214-251 210-246 (367)
391 COG0800 Eda 2-keto-3-deoxy-6-p 93.5 1.7 3.7E-05 37.9 11.8 112 102-251 13-127 (211)
392 cd04729 NanE N-acetylmannosami 93.5 2.1 4.6E-05 37.3 12.8 125 101-251 10-144 (219)
393 PRK04452 acetyl-CoA decarbonyl 93.5 1.3 2.7E-05 41.3 11.7 106 125-249 88-195 (319)
394 cd08207 RLP_NonPhot Ribulose b 93.5 1.6 3.4E-05 42.0 12.7 96 100-203 141-243 (406)
395 PRK13306 ulaD 3-keto-L-gulonat 93.5 4.3 9.2E-05 35.6 14.5 138 101-262 56-199 (216)
396 TIGR01232 lacD tagatose 1,6-di 93.4 0.94 2E-05 41.9 10.5 148 120-278 112-305 (325)
397 PRK08673 3-deoxy-7-phosphohept 93.4 1.3 2.8E-05 41.6 11.6 116 93-233 149-267 (335)
398 PF00809 Pterin_bind: Pterin b 93.4 0.66 1.4E-05 40.5 9.3 73 119-202 25-98 (210)
399 TIGR01362 KDO8P_synth 3-deoxy- 93.3 1.1 2.4E-05 40.1 10.5 110 98-233 70-180 (258)
400 cd00502 DHQase_I Type I 3-dehy 93.3 3.7 8E-05 36.0 14.0 88 104-204 2-97 (225)
401 COG3684 LacD Tagatose-1,6-bisp 93.3 0.48 1E-05 42.4 8.1 149 120-278 117-288 (306)
402 PRK04161 tagatose 1,6-diphosph 93.3 0.57 1.2E-05 43.4 8.9 153 119-278 112-306 (329)
403 COG5016 Pyruvate/oxaloacetate 93.2 0.81 1.8E-05 43.5 9.9 77 111-202 153-230 (472)
404 TIGR02708 L_lactate_ox L-lacta 93.2 2 4.3E-05 40.8 12.7 46 215-261 215-267 (367)
405 cd02922 FCB2_FMN Flavocytochro 93.1 1.4 3E-05 41.5 11.5 82 169-251 117-235 (344)
406 TIGR03569 NeuB_NnaB N-acetylne 93.0 1.2 2.7E-05 41.6 10.9 54 190-251 103-156 (329)
407 TIGR01306 GMP_reduct_2 guanosi 93.0 0.94 2E-05 42.2 10.0 91 153-251 67-159 (321)
408 cd08209 RLP_DK-MTP-1-P-enolase 92.9 2 4.3E-05 41.2 12.2 96 100-203 122-224 (391)
409 PF00697 PRAI: N-(5'phosphorib 92.9 0.28 6.1E-06 42.3 6.1 120 123-261 16-183 (197)
410 cd01573 modD_like ModD; Quinol 92.8 0.73 1.6E-05 41.9 9.0 79 158-251 171-252 (272)
411 PRK09140 2-dehydro-3-deoxy-6-p 92.8 0.95 2.1E-05 39.4 9.3 73 171-251 11-84 (206)
412 COG2876 AroA 3-deoxy-D-arabino 92.8 0.68 1.5E-05 41.6 8.4 113 97-234 105-220 (286)
413 TIGR01305 GMP_reduct_1 guanosi 92.8 0.94 2E-05 42.3 9.6 91 154-251 80-172 (343)
414 cd00308 enolase_like Enolase-s 92.5 2.7 6E-05 36.8 12.0 113 158-280 81-200 (229)
415 cd04737 LOX_like_FMN L-Lactate 92.4 2.4 5.2E-05 40.1 12.0 91 170-261 125-260 (351)
416 PRK01261 aroD 3-dehydroquinate 92.4 2.1 4.6E-05 37.9 11.1 84 103-203 22-106 (229)
417 PRK07259 dihydroorotate dehydr 92.4 4.6 0.0001 37.0 13.9 70 166-236 88-165 (301)
418 PRK05096 guanosine 5'-monophos 92.3 1 2.2E-05 42.0 9.3 91 154-251 81-173 (346)
419 PRK01130 N-acetylmannosamine-6 92.3 4.7 0.0001 35.2 13.2 123 103-251 8-140 (221)
420 PRK13957 indole-3-glycerol-pho 92.2 0.74 1.6E-05 41.2 7.9 96 184-286 62-162 (247)
421 cd02811 IDI-2_FMN Isopentenyl- 92.2 1.4 3.1E-05 41.1 10.2 100 151-251 94-203 (326)
422 TIGR03586 PseI pseudaminic aci 92.1 2.9 6.3E-05 39.1 12.1 53 190-250 104-156 (327)
423 PRK13398 3-deoxy-7-phosphohept 92.1 6.4 0.00014 35.7 14.0 117 111-249 38-156 (266)
424 PLN03033 2-dehydro-3-deoxyphos 92.0 1.4 3.1E-05 40.0 9.6 110 98-233 84-194 (290)
425 cd08208 RLP_Photo Ribulose bis 92.0 2.9 6.4E-05 40.4 12.3 96 100-203 158-260 (424)
426 PRK01222 N-(5'-phosphoribosyl) 91.9 6.3 0.00014 34.3 13.4 111 105-243 4-115 (210)
427 PRK05198 2-dehydro-3-deoxyphos 91.9 2.1 4.6E-05 38.5 10.4 110 98-233 78-188 (264)
428 cd03332 LMO_FMN L-Lactate 2-mo 91.9 2.3 4.9E-05 40.7 11.3 36 215-251 240-275 (383)
429 cd04722 TIM_phosphate_binding 91.9 1.4 3.1E-05 36.6 9.2 109 114-236 12-122 (200)
430 PF03932 CutC: CutC family; I 91.9 2.9 6.2E-05 36.3 11.0 118 111-248 66-189 (201)
431 PRK08673 3-deoxy-7-phosphohept 91.9 5.2 0.00011 37.5 13.5 113 112-250 105-223 (335)
432 PLN02495 oxidoreductase, actin 91.6 1.9 4.2E-05 41.2 10.5 91 155-245 98-201 (385)
433 PF01188 MR_MLE: Mandelate rac 91.6 1.6 3.6E-05 30.5 7.7 63 161-233 2-66 (67)
434 PRK07534 methionine synthase I 91.6 2.4 5.2E-05 39.8 11.1 112 52-201 142-276 (336)
435 COG1954 GlpP Glycerol-3-phosph 91.6 0.89 1.9E-05 38.2 7.1 62 181-251 106-167 (181)
436 cd07944 DRE_TIM_HOA_like 4-hyd 91.5 5.8 0.00013 35.9 13.2 90 99-203 120-215 (266)
437 cd08148 RuBisCO_large Ribulose 91.4 4 8.7E-05 38.7 12.4 119 100-234 125-252 (366)
438 cd04726 KGPDC_HPS 3-Keto-L-gul 91.4 4.9 0.00011 34.3 12.1 120 104-251 3-127 (202)
439 PRK00230 orotidine 5'-phosphat 91.3 9.8 0.00021 33.6 14.5 133 110-274 66-229 (230)
440 cd06557 KPHMT-like Ketopantoat 91.3 3.2 7E-05 37.3 11.2 119 119-249 24-163 (254)
441 cd07937 DRE_TIM_PC_TC_5S Pyruv 91.3 5.5 0.00012 36.2 12.9 91 99-204 129-225 (275)
442 KOG3111|consensus 91.2 2.9 6.3E-05 35.9 10.0 143 103-259 6-202 (224)
443 PRK13396 3-deoxy-7-phosphohept 91.2 7.9 0.00017 36.6 14.0 114 112-251 113-232 (352)
444 PRK08385 nicotinate-nucleotide 91.0 2 4.3E-05 39.2 9.6 87 157-258 169-263 (278)
445 PF00682 HMGL-like: HMGL-like 91.0 3.6 7.7E-05 36.2 11.1 91 99-204 119-214 (237)
446 PRK11613 folP dihydropteroate 90.9 1.4 3.1E-05 40.3 8.6 62 112-177 36-98 (282)
447 cd00377 ICL_PEPM Members of th 90.8 4.7 0.0001 36.0 11.7 84 120-206 22-107 (243)
448 cd03174 DRE_TIM_metallolyase D 90.7 5.3 0.00011 35.5 12.1 153 117-278 77-248 (265)
449 PRK06559 nicotinate-nucleotide 90.6 2.5 5.4E-05 38.8 9.8 84 157-258 183-273 (290)
450 PRK09427 bifunctional indole-3 90.5 17 0.00036 35.7 16.1 116 110-261 315-436 (454)
451 TIGR00977 LeuA_rel 2-isopropyl 90.5 3.7 8.1E-05 41.0 11.8 176 111-303 151-373 (526)
452 cd00958 DhnA Class I fructose- 90.5 1.7 3.7E-05 38.3 8.6 84 98-203 119-214 (235)
453 KOG4013|consensus 90.5 1.7 3.7E-05 37.2 8.0 115 117-248 19-143 (255)
454 PRK09549 mtnW 2,3-diketo-5-met 90.4 5.8 0.00013 38.2 12.5 96 100-203 132-234 (407)
455 PF02679 ComA: (2R)-phospho-3- 90.4 2.6 5.7E-05 37.6 9.5 101 114-228 84-196 (244)
456 cd07943 DRE_TIM_HOA 4-hydroxy- 90.4 7.5 0.00016 35.0 12.8 90 99-203 123-217 (263)
457 PRK08444 hypothetical protein; 90.3 2 4.4E-05 40.6 9.3 122 111-248 80-222 (353)
458 cd04733 OYE_like_2_FMN Old yel 90.3 3.3 7.1E-05 38.8 10.8 98 102-203 217-322 (338)
459 PLN02424 ketopantoate hydroxym 90.2 3.8 8.2E-05 38.2 10.7 104 119-233 47-156 (332)
460 PRK06106 nicotinate-nucleotide 90.2 3.2 6.9E-05 38.0 10.2 84 157-258 180-270 (281)
461 TIGR03326 rubisco_III ribulose 90.2 7 0.00015 37.8 12.9 96 100-203 142-244 (412)
462 PRK12581 oxaloacetate decarbox 90.2 3.4 7.5E-05 40.5 11.0 108 107-231 95-209 (468)
463 TIGR03332 salvage_mtnW 2,3-dik 90.1 5.7 0.00012 38.3 12.2 96 100-203 137-239 (407)
464 COG2513 PrpB PEP phosphonomuta 90.1 4.6 0.0001 36.8 10.9 77 119-205 30-115 (289)
465 PRK06843 inosine 5-monophospha 90.1 3.8 8.3E-05 39.4 11.0 63 184-251 153-216 (404)
466 cd08213 RuBisCO_large_III Ribu 90.0 5.7 0.00012 38.4 12.2 96 100-203 129-231 (412)
467 PRK09427 bifunctional indole-3 90.0 2.9 6.4E-05 40.9 10.4 99 154-263 145-247 (454)
468 TIGR01334 modD putative molybd 90.0 2.9 6.2E-05 38.2 9.6 92 156-261 174-270 (277)
469 cd06543 GH18_PF-ChiA-like PF-C 89.9 4.3 9.2E-05 37.4 10.9 99 96-203 62-177 (294)
470 PRK11320 prpB 2-methylisocitra 89.9 4 8.6E-05 37.6 10.6 83 119-205 29-115 (292)
471 PRK11197 lldD L-lactate dehydr 89.9 3.6 7.8E-05 39.3 10.6 37 214-251 231-267 (381)
472 TIGR01496 DHPS dihydropteroate 89.8 1.9 4.2E-05 38.8 8.5 63 111-177 20-83 (257)
473 TIGR03128 RuMP_HxlA 3-hexulose 89.8 7.1 0.00015 33.5 11.8 120 104-251 2-127 (206)
474 COG0329 DapA Dihydrodipicolina 89.7 2.5 5.5E-05 38.9 9.3 82 180-261 22-113 (299)
475 PRK14042 pyruvate carboxylase 89.7 4.6 0.0001 40.9 11.8 78 111-203 151-229 (596)
476 TIGR01303 IMP_DH_rel_1 IMP deh 89.7 0.94 2E-05 44.6 6.7 64 183-251 224-288 (475)
477 cd08206 RuBisCO_large_I_II_III 89.6 6.9 0.00015 37.8 12.4 96 100-203 130-233 (414)
478 COG0135 TrpF Phosphoribosylant 89.6 4 8.7E-05 35.6 9.9 89 124-238 20-108 (208)
479 TIGR02319 CPEP_Pphonmut carbox 89.5 5.7 0.00012 36.6 11.3 83 119-205 28-114 (294)
480 cd00452 KDPG_aldolase KDPG and 89.5 3.1 6.7E-05 35.5 9.1 73 171-251 5-77 (190)
481 TIGR01093 aroD 3-dehydroquinat 89.4 7.3 0.00016 34.3 11.7 89 104-203 2-99 (228)
482 PRK00366 ispG 4-hydroxy-3-meth 89.4 9.3 0.0002 35.9 12.6 110 100-236 24-140 (360)
483 PF00215 OMPdecase: Orotidine 89.3 1.8 3.9E-05 38.0 7.8 90 103-205 2-94 (226)
484 KOG4175|consensus 89.3 8.8 0.00019 33.3 11.3 41 218-258 196-239 (268)
485 PF04309 G3P_antiterm: Glycero 89.3 0.42 9.2E-06 40.5 3.5 63 180-251 101-163 (175)
486 PRK08645 bifunctional homocyst 89.3 7 0.00015 39.8 12.9 70 116-201 186-268 (612)
487 PLN02460 indole-3-glycerol-pho 89.2 4 8.6E-05 38.3 10.1 64 196-262 251-325 (338)
488 PRK04208 rbcL ribulose bisopho 89.2 7.1 0.00015 38.3 12.3 96 99-203 157-261 (468)
489 PRK14041 oxaloacetate decarbox 89.2 6 0.00013 38.9 11.9 77 112-203 151-228 (467)
490 CHL00040 rbcL ribulose-1,5-bis 89.1 7.5 0.00016 38.2 12.4 96 100-203 165-268 (475)
491 PRK12331 oxaloacetate decarbox 89.1 6 0.00013 38.7 11.8 78 111-203 151-229 (448)
492 PF03102 NeuB: NeuB family; I 89.0 1.4 3.1E-05 39.3 6.9 117 119-248 1-133 (241)
493 COG2876 AroA 3-deoxy-D-arabino 88.9 3.7 7.9E-05 37.0 9.2 120 112-254 57-179 (286)
494 cd00956 Transaldolase_FSA Tran 88.9 6.2 0.00013 34.5 10.7 122 101-251 51-179 (211)
495 PRK15129 L-Ala-D/L-Glu epimera 88.9 19 0.00042 33.3 15.1 82 102-201 119-202 (321)
496 PLN02716 nicotinate-nucleotide 88.9 4.4 9.5E-05 37.5 10.1 91 157-258 186-294 (308)
497 cd07948 DRE_TIM_HCS Saccharomy 88.8 2.5 5.3E-05 38.3 8.3 133 111-251 72-210 (262)
498 PRK05105 O-succinylbenzoate sy 88.7 16 0.00034 34.0 13.9 108 108-241 111-222 (322)
499 PRK05458 guanosine 5'-monophos 88.6 3.8 8.3E-05 38.3 9.7 90 153-251 70-162 (326)
500 PF03599 CdhD: CO dehydrogenas 88.6 1.5 3.3E-05 41.7 7.1 114 104-235 73-215 (386)
No 1
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-46 Score=346.57 Aligned_cols=226 Identities=35% Similarity=0.550 Sum_probs=205.4
Q ss_pred ccccccccCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCC
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPRE 100 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (306)
.+++.+.++|++++|||.++||.+||.+++++|+ ++++|||+++....+..+.....+.. . +.
T Consensus 2 ~~~~~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~---------------~-~~ 65 (323)
T COG0042 2 LKIGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDE---------------L-EE 65 (323)
T ss_pred CccccccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCc---------------C-CC
Confidence 4678899999999999999999999999999898 99999999999887655433222111 0 24
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEecc
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~ 178 (306)
+.|+++||+|++|+.++++|+.+++ |+|+||||+|||++++.+.++|+.|+++|+++.+++++++++++ +||+||+|+
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 5789999999999999999999876 99999999999999999999999999999999999999999995 999999999
Q ss_pred CCChHH--HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHh----hh
Q psy4398 179 FHNEAD--TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSL----NC 251 (306)
Q Consensus 179 g~~~~~--~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~----~v 251 (306)
||+..+ ..++++.++++|++.|+||+|++.+.|.+|++|++++++++.++ +|||+||+|.|.+++.++++. +|
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgV 225 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGV 225 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEE
Confidence 998776 88999999999999999999999999999999999999999998 999999999999999999996 67
Q ss_pred hhccccCCCCCc
Q psy4398 252 AFLRNHYPVEKL 263 (306)
Q Consensus 252 ~vGrall~~p~~ 263 (306)
|+||+.|.||++
T Consensus 226 MigRga~~nP~l 237 (323)
T COG0042 226 MIGRGALGNPWL 237 (323)
T ss_pred EEcHHHccCCcH
Confidence 999999999954
No 2
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=3.6e-45 Score=338.71 Aligned_cols=261 Identities=27% Similarity=0.364 Sum_probs=214.2
Q ss_pred cccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCC
Q psy4398 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKN 102 (306)
Q Consensus 23 ~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 102 (306)
++++++++||+++|||.++||.+||.+++++|+|+++|||+++++...........+ ...+...
T Consensus 2 ~i~~~~~~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~----------------~~~~~~~ 65 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM----------------VHIDEPG 65 (321)
T ss_pred ccCCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHh----------------ccCccCC
Confidence 578999999999999999999999999999999999999999876532211111110 0112346
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
|+++||+|+++++++++|+++++ |+|+||||+|||++++.+.++|+.++++|+++.++++++++++++||++|+|.||+
T Consensus 66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~ 145 (321)
T PRK10415 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA 145 (321)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc
Confidence 89999999999999999998764 99999999999999988999999999999999999999999999999999999886
Q ss_pred hH--HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhcc
Q psy4398 182 EA--DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLR 255 (306)
Q Consensus 182 ~~--~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGr 255 (306)
.+ +..++++.++++|+|+|++|+|+..+.+.++.+|++++++++.+++|||+||||.|+++++++++. +|++||
T Consensus 146 ~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR 225 (321)
T PRK10415 146 PEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGR 225 (321)
T ss_pred CCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEECh
Confidence 54 588999999999999999999999888988889999999999999999999999999999999974 569999
Q ss_pred ccCCCCCchHHHHHHHHHhcC-CCCCcceehh--hccceeeEEEEcCc
Q psy4398 256 NHYPVEKLPKTILYAHCKYKR-FEVPKYETVQ--YEKLFRSLVTVNGK 300 (306)
Q Consensus 256 all~~p~~~~~~l~~~~~~~g-~~~~~~~~~~--~~~~~~~~~~~~~~ 300 (306)
+++.||++-.. ++++++.-. ++.+.+.+.. +.++++.+.++-|+
T Consensus 226 ~~l~nP~if~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (321)
T PRK10415 226 AAQGRPWIFRE-IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP 272 (321)
T ss_pred HhhcCChHHHH-HHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh
Confidence 99999954432 345554322 2233344432 55555555554443
No 3
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=7.9e-44 Score=327.77 Aligned_cols=224 Identities=22% Similarity=0.322 Sum_probs=191.1
Q ss_pred ceEEccCCCCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecC
Q psy4398 32 KIILAPMVRMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGT 110 (306)
Q Consensus 32 ~i~lAPm~~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g 110 (306)
|+++|||.|+||.+||.+++++| +++++|||++++...........+... ..+. .....+.|+++||+|
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~--~~~~--------~~~~~e~p~~vQl~g 71 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPE--LHNA--------SRTPSGTLVRIQLLG 71 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHH--hccc--------CCCCCCCcEEEEecc
Confidence 79999999999999999998888 899999999987655332211100000 0000 011246799999999
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCCh-HHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNE-ADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~-~~~~ 186 (306)
++|++|+++|+++++ |+|+||||+|||++.+.+.+.|++++++++++.++++++++++ ++||+||+|.|++. ++..
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~ 151 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKF 151 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHH
Confidence 999999999998875 9999999999999999999999999999999999999999988 49999999998754 4588
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVE 261 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p 261 (306)
++++.++++|+|.|+||+|+..+.|.+++ +|+.++++++++++|||+||||.|+++++++++. ++++||+++.||
T Consensus 152 ~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP 231 (312)
T PRK10550 152 EIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIP 231 (312)
T ss_pred HHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCc
Confidence 99999999999999999999999998874 8999999999999999999999999999999964 679999999999
Q ss_pred CchH
Q psy4398 262 KLPK 265 (306)
Q Consensus 262 ~~~~ 265 (306)
++.+
T Consensus 232 ~lf~ 235 (312)
T PRK10550 232 NLSR 235 (312)
T ss_pred HHHH
Confidence 5544
No 4
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=5.5e-43 Score=324.70 Aligned_cols=236 Identities=29% Similarity=0.444 Sum_probs=200.7
Q ss_pred ccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCc
Q psy4398 24 QANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNK 103 (306)
Q Consensus 24 ~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p 103 (306)
++++.++||+++|||.++|+.+||.+++++|+++++|||++++.+....+.....+ .. +..+.|
T Consensus 1 ~~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~---------------~~-~~~~~p 64 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLL---------------DI-AEDETP 64 (319)
T ss_pred CCCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHh---------------hc-CCccce
Confidence 47889999999999999999999999999999999999999887654332221111 11 124679
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
+++||+|+++++|+++|+++++ |||+||||+|||+..+.+.++|+.++++++++.++++++++.+++||+||+|.|++.
T Consensus 65 ~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~ 144 (319)
T TIGR00737 65 ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD 144 (319)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC
Confidence 9999999999999999999975 999999999999766555666666899999999999999999999999999988753
Q ss_pred --HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccc
Q psy4398 183 --ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRN 256 (306)
Q Consensus 183 --~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGra 256 (306)
.+..++++.++++|+|+|++|+|+..+.+.++.+|++++++++.+++|||+||||.|+++++++++. ++++||+
T Consensus 145 ~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 145 AHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred CcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChh
Confidence 3478999999999999999999998888888889999999999999999999999999999999964 5699999
Q ss_pred cCCCCCchHHHHHHHHHhcC
Q psy4398 257 HYPVEKLPKTILYAHCKYKR 276 (306)
Q Consensus 257 ll~~p~~~~~~l~~~~~~~g 276 (306)
++.||++... +.+++....
T Consensus 225 ~l~~P~l~~~-~~~~~~~~~ 243 (319)
T TIGR00737 225 ALGNPWLFRQ-IEQYLTTGK 243 (319)
T ss_pred hhhCChHHHH-HHHHHhCCC
Confidence 9999965433 345555433
No 5
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=7e-43 Score=322.06 Aligned_cols=216 Identities=23% Similarity=0.366 Sum_probs=188.4
Q ss_pred CceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec
Q psy4398 31 NKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG 109 (306)
Q Consensus 31 n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~ 109 (306)
+|+++|||.++||.+||.+++++|+ +++||||++++.+...... .+ .... +.+.|+++||+
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~---------------l~~~-~~e~p~~vQl~ 62 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DI---------------LKFS-PEESPVALQLG 62 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HH---------------cccC-CCCCcEEEEEc
Confidence 5899999999999999999999997 9999999999876643222 11 1112 24679999999
Q ss_pred CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh----HH
Q psy4398 110 TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE----AD 184 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~----~~ 184 (306)
|+++++|+++|+.+++ |+|+||||+|||++++++++||++++++|+++.++++++++++++||+||+|+|++. ++
T Consensus 63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~ 142 (318)
T TIGR00742 63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEF 142 (318)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHH
Confidence 9999999999999975 999999999999999999999999999999999999999999999999999998753 46
Q ss_pred HHHHHHHHHHcCCcEEEEcccCC-CCCCC-------CCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH--hhhhh
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTK-AERPR-------HRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFS--LNCAF 253 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~-~~~~~-------~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~--~~v~v 253 (306)
+.++++.++++|++.|++|+|+. .+.++ +|.+|++++++++.+ ++|||+||||.|.+|+++.++ .++|+
T Consensus 143 ~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~g~dgVMi 222 (318)
T TIGR00742 143 LCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMV 222 (318)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHhCCCEEEE
Confidence 78999999999999999999986 34443 345899999999998 899999999999999999986 36799
Q ss_pred ccccCCCCCch
Q psy4398 254 LRNHYPVEKLP 264 (306)
Q Consensus 254 Grall~~p~~~ 264 (306)
||+++.||++-
T Consensus 223 gRgal~nP~if 233 (318)
T TIGR00742 223 GREAYENPYLL 233 (318)
T ss_pred CHHHHhCCHHH
Confidence 99999999443
No 6
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=1.4e-43 Score=326.72 Aligned_cols=214 Identities=36% Similarity=0.547 Sum_probs=168.5
Q ss_pred EEccCCCCCCHHHHHHHHHcCCC-EEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecCCC
Q psy4398 34 ILAPMVRMNTLPFRLLALDYGAD-LVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTAD 112 (306)
Q Consensus 34 ~lAPm~~~t~~~~r~~~~~~G~g-~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g~~ 112 (306)
++|||.++|+.+||.+++++|+. +++|||+++..+.+........+.. . +.+.|+++||+|++
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~---------------~-~~~~p~~~Ql~g~~ 64 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPF---------------L-PNERPLIVQLFGND 64 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-G---------------C-C-T-TEEEEEE-S-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccc---------------c-ccccceeEEEeecc
Confidence 68999999999999999999986 9999999988776554433222211 1 23469999999999
Q ss_pred HHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC--hHHHHHHH
Q psy4398 113 PERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALC 189 (306)
Q Consensus 113 ~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~--~~~~~~~a 189 (306)
++.++++|+++.+ |+|+||||||||.+.+.+.++|++|+++|+.+.++++++++.+++||+||+|.|++ .+++.+++
T Consensus 65 ~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~ 144 (309)
T PF01207_consen 65 PEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFA 144 (309)
T ss_dssp HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHH
T ss_pred HHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHH
Confidence 9999999999987 99999999999999999999999999999999999999999999999999999987 67799999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCCc
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEKL 263 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~~ 263 (306)
+.++++|+++|+||+|++.+.|.++++|+.++++++.+++|||+||||.|.+++++.++. ++|+||+++.||++
T Consensus 145 ~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~l 222 (309)
T PF01207_consen 145 RILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWL 222 (309)
T ss_dssp HHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCH
T ss_pred HHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHH
Confidence 999999999999999999999999999999999999999999999999999999999985 67999999999943
No 7
>KOG2335|consensus
Probab=100.00 E-value=7.5e-43 Score=316.18 Aligned_cols=214 Identities=33% Similarity=0.554 Sum_probs=194.9
Q ss_pred EEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecCCCH
Q psy4398 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADP 113 (306)
Q Consensus 34 ~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g~~~ 113 (306)
++|||.++|+.+||.+++++|+.++||||+.++...+.....+.. +.++ +++.|+|+|++++++
T Consensus 22 i~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~---------------~st~-~~D~PLIvQf~~ndp 85 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSE---------------LSTS-PEDRPLIVQFGGNDP 85 (358)
T ss_pred ccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhh---------------cccC-CCCCceEEEEcCCCH
Confidence 899999999999999999999999999999888776543322221 2223 367899999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHH
Q psy4398 114 ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLE 193 (306)
Q Consensus 114 ~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~ 193 (306)
+.+.+||++++..+|+|+||||||+..+.+++||+.|+.+++++.++++++++.++.||++|||++.+.++++++|+.++
T Consensus 86 ~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e 165 (358)
T KOG2335|consen 86 ENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLE 165 (358)
T ss_pred HHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEcccCCCCCC--CCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHh----hhhhccccCCCC-Cc
Q psy4398 194 ACGIIAIGVHGRTKAERP--RHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVE-KL 263 (306)
Q Consensus 194 ~~G~d~i~v~~~~~~~~~--~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p-~~ 263 (306)
++|++.++||||++.++. .+|++|+.++.|++.+. +|||+||+|.+.+|+...+++ |||.||++|.|| .+
T Consensus 166 ~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F 243 (358)
T KOG2335|consen 166 DAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALF 243 (358)
T ss_pred hCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhh
Confidence 999999999999987664 78999999999999996 999999999999999999985 779999999999 44
No 8
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=8.6e-42 Score=317.66 Aligned_cols=220 Identities=23% Similarity=0.340 Sum_probs=190.4
Q ss_pred cCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEE
Q psy4398 29 YSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQ 107 (306)
Q Consensus 29 l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivq 107 (306)
.++|+++|||.++||.+||.+++++|+ ++++|||++++.+.+... ..++ .. .+.+.|+++|
T Consensus 9 ~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~--~~~l---------------~~-~~~e~p~~vQ 70 (333)
T PRK11815 9 PSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDR--ERLL---------------AF-DPEEHPVALQ 70 (333)
T ss_pred CCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccCH--HHHh---------------cc-CCCCCcEEEE
Confidence 578999999999999999999999996 999999999887655331 1111 11 1246799999
Q ss_pred ecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC----h
Q psy4398 108 IGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN----E 182 (306)
Q Consensus 108 l~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~----~ 182 (306)
|+|+++++|+++|+++++ |+|+||||+|||++++++++||++++++++++.++++++++++++||+||+|.|++ .
T Consensus 71 l~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~ 150 (333)
T PRK11815 71 LGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSY 150 (333)
T ss_pred EeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCH
Confidence 999999999999999986 99999999999999999999999999999999999999999999999999998754 2
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC-CCCC-------CCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh--hh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK-AERP-------RHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL--NC 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~-~~~~-------~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~--~v 251 (306)
++..++++.++++|+|+|++|+|+. .+.+ .+|.+|++++++++.+ ++|||+||||+|+++++++++. +|
T Consensus 151 ~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~aDgV 230 (333)
T PRK11815 151 EFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGV 230 (333)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhcCCEE
Confidence 4578999999999999999999874 2223 2567899999999986 9999999999999999999973 77
Q ss_pred hhccccCCCCCchHH
Q psy4398 252 AFLRNHYPVEKLPKT 266 (306)
Q Consensus 252 ~vGrall~~p~~~~~ 266 (306)
++||+++.||++.+.
T Consensus 231 mIGRa~l~nP~~~~~ 245 (333)
T PRK11815 231 MIGRAAYHNPYLLAE 245 (333)
T ss_pred EEcHHHHhCCHHHHH
Confidence 999999999965554
No 9
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=1.5e-40 Score=294.79 Aligned_cols=219 Identities=39% Similarity=0.587 Sum_probs=194.7
Q ss_pred ceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecCC
Q psy4398 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTA 111 (306)
Q Consensus 32 ~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g~ 111 (306)
++++|||.++|+.+||.+++++|+++++|||+.++.+....+.....+ . ..+.+.|+++||+|+
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~p~~~qi~g~ 64 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLL---------------T-RNPEERPLIVQLGGS 64 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhh---------------c-cCccCCCEEEEEcCC
Confidence 589999999999999999999999999999999887765544321111 0 123568999999999
Q ss_pred CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChH-HHHHHH
Q psy4398 112 DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA-DTIALC 189 (306)
Q Consensus 112 ~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~-~~~~~a 189 (306)
++++|.++|+++++ |||+||||+|||++|.++++||++++++++++.++++++++.++.|++||+|.+++.+ +..+++
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~ 144 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELA 144 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHH
Confidence 99999999999986 9999999999999999999999999999999999999999999999999999988775 899999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCCchH
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEKLPK 265 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~~~~ 265 (306)
+.++++|+|+|++|+++..+.+.++.+|++++++++.+++||+++|||.|.+++.++++. ++++||+++.||++.+
T Consensus 145 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~ 224 (231)
T cd02801 145 KALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFR 224 (231)
T ss_pred HHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHH
Confidence 999999999999999987665666779999999999999999999999999999999986 3599999999996665
Q ss_pred H
Q psy4398 266 T 266 (306)
Q Consensus 266 ~ 266 (306)
.
T Consensus 225 ~ 225 (231)
T cd02801 225 E 225 (231)
T ss_pred h
Confidence 4
No 10
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=6.2e-40 Score=302.01 Aligned_cols=250 Identities=19% Similarity=0.224 Sum_probs=204.4
Q ss_pred ccccccccccCCceEEccC-CCCCCHHHHHHHHHcCCCEEEecceechhhhhh-----hhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPM-VRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-----ERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm-~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
|+++++|++|+|||++||+ .+.++..++.++ +.|+|+++|++++.++.... .+...+++|+.++.+++....+
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~~~~~~~~~~-~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~ 79 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGSGVESLRRID-RSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFL 79 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCCCHHHHHHHH-HcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHH
Confidence 4678999999999999996 578888888876 56999999999998765311 1122357788888876543321
Q ss_pred ---eecCCCCCCceEEEecCCCHHHHHHHHHHHhc---CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 94 ---FRTCPREKNKIILQIGTADPERALEAAKKVEH---DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 94 ---~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~---g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
....++.+.|+++||+|.++++|.++++.+++ ++|+||||+|||+.+ ++|..++++++++.++++++++.
T Consensus 80 ~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~ 155 (300)
T TIGR01037 80 EELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDK 155 (300)
T ss_pred HHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHh
Confidence 11223446799999999999999999999873 499999999999964 47888999999999999999999
Q ss_pred ccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC----------------CCCCCCCC----cHHHHHHHHhhC
Q psy4398 168 LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK----------------AERPRHRN----RIEMIRTLTQHL 227 (306)
Q Consensus 168 ~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~----------------~~~~~~p~----~~~~v~~i~~~~ 227 (306)
+++||+||++ ++.++..++++.++++|+|+|++|++.. .+.++++. .+++++++++.+
T Consensus 156 ~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 233 (300)
T TIGR01037 156 TDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV 233 (300)
T ss_pred cCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC
Confidence 9999999999 6677899999999999999999975321 12344443 358899999999
Q ss_pred CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCchH-H--HHHHHHHhcC
Q psy4398 228 KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPK-T--ILYAHCKYKR 276 (306)
Q Consensus 228 ~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~-~--~l~~~~~~~g 276 (306)
++|||++|||.|.+++.++++.| +++||+++.+|.+.+ + +|++||+++|
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999864 599999999995544 3 9999999999
No 11
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=6.9e-39 Score=294.52 Aligned_cols=260 Identities=17% Similarity=0.179 Sum_probs=211.4
Q ss_pred cccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhh-----hhhhcccccccccCCCCCceeee
Q psy4398 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE-----RKVNDLLNTIDFVDPLDGSVVFR 95 (306)
Q Consensus 21 ~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~ 95 (306)
++++.|++|+|||++|++...++..++.++..+|+|+++|++++.++..... +...+++|++++.|++....+.+
T Consensus 1 ~~~~~G~~~~nP~~~aag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~ 80 (296)
T cd04740 1 SVELAGLRLKNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEE 80 (296)
T ss_pred CeEECCEEcCCCCEECCCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHH
Confidence 3678999999999999988767778888876666999999999987654211 12246778888888764332222
Q ss_pred ---cCCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 96 ---TCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 96 ---~~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
..++.+.|+++||.+.++++|.++|+++++ |+|+||||++||+.+. .|..+.++++++.++++++++.+++|
T Consensus 81 ~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~----~g~~~~~~~~~~~eiv~~vr~~~~~P 156 (296)
T cd04740 81 LLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKG----GGMAFGTDPEAVAEIVKAVKKATDVP 156 (296)
T ss_pred HHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCC----CcccccCCHHHHHHHHHHHHhccCCC
Confidence 223356899999999999999999999976 8999999999999643 36778899999999999999999999
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC---------C-------CCCCCC----CcHHHHHHHHhhCCCcE
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK---------A-------ERPRHR----NRIEMIRTLTQHLKIPV 231 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------~-------~~~~~p----~~~~~v~~i~~~~~ipv 231 (306)
|+||++ ++.++..++++.++++|+|+|++++++. . +.++++ ..+++++++++.+++||
T Consensus 157 v~vKl~--~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipi 234 (296)
T cd04740 157 VIVKLT--PNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPI 234 (296)
T ss_pred EEEEeC--CCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCE
Confidence 999999 6667899999999999999999854321 0 223333 35789999999999999
Q ss_pred EEecCCCCHHHHHHHHHhh---hhhccccCCCCCchH-H--HHHHHHHhcCCCCCcceehhhccceeeEEEEcCc
Q psy4398 232 IANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPK-T--ILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGK 300 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~-~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (306)
|++|||.|.+++.++++.| +++||+++.||.+.+ + ++++||+++| |+|+.+++|+
T Consensus 235 i~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g--------------~~~~~~~~g~ 295 (296)
T cd04740 235 IGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEG--------------IKSIEELVGL 295 (296)
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcC--------------CCCHHHHhCc
Confidence 9999999999999999875 499999999995544 3 9999999999 7788777774
No 12
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=100.00 E-value=1.7e-38 Score=292.58 Aligned_cols=252 Identities=17% Similarity=0.190 Sum_probs=202.9
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhh-----hhhhcccccccccCCCCCceee
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE-----RKVNDLLNTIDFVDPLDGSVVF 94 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~ 94 (306)
|++++.|++|+|||++|+++-..+..+.......|+|++++++++.++..... +...+++|++++.|+|....+.
T Consensus 2 l~~~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~ 81 (301)
T PRK07259 2 LSVELPGLKLKNPVMPASGTFGFGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIE 81 (301)
T ss_pred CceEECCEECCCCcEECCcCCCCCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHH
Confidence 57889999999999999975444445555455899999999999977653111 1235678888888887543322
Q ss_pred ec---CCCCCCceEEEecCCCHHHHHHHHHHHhc-C-CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc
Q psy4398 95 RT---CPREKNKIILQIGTADPERALEAAKKVEH-D-VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS 169 (306)
Q Consensus 95 ~~---~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g-~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~ 169 (306)
+. .++.+.|+++||+|+++++|.++|+++++ | +|+||||++||+. ..+ |..+.++++++.++++++++.++
T Consensus 82 ~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~---~~g-g~~~~~~~~~~~eiv~~vr~~~~ 157 (301)
T PRK07259 82 EELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNV---KHG-GMAFGTDPELAYEVVKAVKEVVK 157 (301)
T ss_pred HHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCC---CCC-ccccccCHHHHHHHHHHHHHhcC
Confidence 22 22346899999999999999999999986 7 9999999999994 222 66788999999999999999999
Q ss_pred ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC----------------CCCCC----CCcHHHHHHHHhhCCC
Q psy4398 170 IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA----------------ERPRH----RNRIEMIRTLTQHLKI 229 (306)
Q Consensus 170 ~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~----------------~~~~~----p~~~~~v~~i~~~~~i 229 (306)
+||+||++ ++.++..++++.++++|+|+|++++++.. +.+++ |..+++++++++.+++
T Consensus 158 ~pv~vKl~--~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~i 235 (301)
T PRK07259 158 VPVIVKLT--PNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDI 235 (301)
T ss_pred CCEEEEcC--CCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCC
Confidence 99999999 66678999999999999999997543211 12222 3478999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCchH-H--HHHHHHHhcCC
Q psy4398 230 PVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPK-T--ILYAHCKYKRF 277 (306)
Q Consensus 230 pvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~-~--~l~~~~~~~g~ 277 (306)
|||++|||.|.+++.++++.| +++||+++.||.+.+ + ++++||+++||
T Consensus 236 pvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 236 PIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999875 599999999995554 3 99999999993
No 13
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=1.9e-36 Score=281.81 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=198.4
Q ss_pred ccccccccccCCceEEccCCCC---------CCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM---------NTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~---------t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (306)
.|++|+++++||||++|||... |+.....+. +++|+|+++||.+.+.+.....+...++ .+..++.
T Consensus 5 ~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~-~~d~~i~-- 81 (337)
T PRK13523 5 SPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGI-WDDEHIE-- 81 (337)
T ss_pred CCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceec-CCHHHHH--
Confidence 5789999999999999999632 222333332 3678999999988776533221111112 2222222
Q ss_pred CCceeeecCCCCCCceEEEecCCC-----------------------------------HHHHHHHHHHHhc-CCCEEEE
Q psy4398 89 DGSVVFRTCPREKNKIILQIGTAD-----------------------------------PERALEAAKKVEH-DVAAIDI 132 (306)
Q Consensus 89 ~~~~~~~~~~~~~~p~ivql~g~~-----------------------------------~~~~~~aa~~~~~-g~d~vel 132 (306)
.++.+.+.+|++|.++++||++.+ .++|+++|+++++ |||+|||
T Consensus 82 ~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVei 161 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEI 161 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 156678888889999999996521 2579999999975 9999999
Q ss_pred ccC---------CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------CCChHHHHHHHHHHHHcCC
Q psy4398 133 NMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------FHNEADTIALCKRLEACGI 197 (306)
Q Consensus 133 n~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------g~~~~~~~~~a~~l~~~G~ 197 (306)
|++ ||..|.|+|+||+++++|.+++.||+++||++++.||.+|++. |.+.++..++++.|++.|+
T Consensus 162 h~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gv 241 (337)
T PRK13523 162 HGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGV 241 (337)
T ss_pred ccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCC
Confidence 998 8999999999999999999999999999999999999999997 4578889999999999999
Q ss_pred cEEEEcccCCC----CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCCchHHHHH
Q psy4398 198 IAIGVHGRTKA----ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEKLPKTILY 269 (306)
Q Consensus 198 d~i~v~~~~~~----~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~~~~~~l~ 269 (306)
|+|+|++++.. ..+.+ .++++++++++.+++||+++|+|.|+++++++++. +|++||++++||+++++..+
T Consensus 242 D~i~vs~g~~~~~~~~~~~~-~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 320 (337)
T PRK13523 242 DLIDVSSGAVVPARIDVYPG-YQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAK 320 (337)
T ss_pred CEEEeCCCCCCCCCCCCCcc-ccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHH
Confidence 99999987632 11222 36889999999999999999999999999999986 56999999999999887544
Q ss_pred HHHH
Q psy4398 270 AHCK 273 (306)
Q Consensus 270 ~~~~ 273 (306)
.+-.
T Consensus 321 ~~~~ 324 (337)
T PRK13523 321 ELGF 324 (337)
T ss_pred HcCC
Confidence 4433
No 14
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=3.1e-36 Score=281.57 Aligned_cols=259 Identities=12% Similarity=0.124 Sum_probs=197.8
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|++++++++||||++|||.. +|+...+.+. .++|+|+++||.+.+.+.........++ .+..++.. +
T Consensus 3 ~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l-~~d~~i~~--~ 79 (343)
T cd04734 3 SPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNA-SDDEIIPG--F 79 (343)
T ss_pred CCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCcccc-CCHHHHHH--H
Confidence 578999999999999999962 3444444443 3578999999999876543222211122 22233322 5
Q ss_pred ceeeecCCCCCCceEEEecCCC--------------------------------------HHHHHHHHHHHhc-CCCEEE
Q psy4398 91 SVVFRTCPREKNKIILQIGTAD--------------------------------------PERALEAAKKVEH-DVAAID 131 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~~--------------------------------------~~~~~~aa~~~~~-g~d~ve 131 (306)
+.+.+.+|+++.++++||++.. .++|++||+++++ |||+||
T Consensus 80 ~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVe 159 (343)
T cd04734 80 RRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVE 159 (343)
T ss_pred HHHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 6678888889999999997421 2579999999875 999999
Q ss_pred EccC---------CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC--------CChHHHHHHHHHHHH
Q psy4398 132 INMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF--------HNEADTIALCKRLEA 194 (306)
Q Consensus 132 ln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g--------~~~~~~~~~a~~l~~ 194 (306)
||++ ||..|.|+|+||+++++|.+++.||++++|++++.++.||+|++ .+.+++.++++.|++
T Consensus 160 ih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~ 239 (343)
T cd04734 160 LQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAA 239 (343)
T ss_pred EccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHh
Confidence 9994 89999999999999999999999999999999987777777764 346789999999999
Q ss_pred cC-CcEEEEcccCCCCC----------C-CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccC
Q psy4398 195 CG-IIAIGVHGRTKAER----------P-RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHY 258 (306)
Q Consensus 195 ~G-~d~i~v~~~~~~~~----------~-~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall 258 (306)
+| +|+|+|+.+..... + ....+++.++++++.+++|||++|+|.|+++++++++. ++++||+++
T Consensus 240 ~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~l 319 (343)
T cd04734 240 EGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHI 319 (343)
T ss_pred cCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhH
Confidence 98 89999975432211 1 12236889999999999999999999999999999985 569999999
Q ss_pred CCCCchHHHHHHHHHhcCCC-CCcceeh
Q psy4398 259 PVEKLPKTILYAHCKYKRFE-VPKYETV 285 (306)
Q Consensus 259 ~~p~~~~~~l~~~~~~~g~~-~~~~~~~ 285 (306)
.||+|+++.. +.+.-+ .+|..|+
T Consensus 320 adP~l~~k~~----~g~~~~i~~C~~C~ 343 (343)
T cd04734 320 ADPHLVAKAR----EGREDDIRPCIGCN 343 (343)
T ss_pred hCccHHHHHH----cCCccCcCcCcCCC
Confidence 9998886532 222212 4577664
No 15
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=100.00 E-value=5.6e-36 Score=279.42 Aligned_cols=260 Identities=18% Similarity=0.188 Sum_probs=204.3
Q ss_pred ccccccccccCCceEEccCCCC--------CCHHHHHHHH--HcCCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------NTLPFRLLAL--DYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t~~~~r~~~~--~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.|+++++++|+|||+||||+.. |+.....+.+ ++|+|+++||++.+.+.........++++. ..+..
T Consensus 8 ~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d-~~i~~-- 84 (363)
T COG1902 8 EPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSD-AQIPG-- 84 (363)
T ss_pred CCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCCh-hHhHH--
Confidence 6779999999999999999942 3344444432 567999999988777655433333344333 22333
Q ss_pred CceeeecCCCCCCceEEEecCCC----------------------------------------HHHHHHHHHHHhc-CCC
Q psy4398 90 GSVVFRTCPREKNKIILQIGTAD----------------------------------------PERALEAAKKVEH-DVA 128 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~----------------------------------------~~~~~~aa~~~~~-g~d 128 (306)
++.+.+++|++|.++++||+|.. .++|++||+++++ |||
T Consensus 85 ~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFD 164 (363)
T COG1902 85 LKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFD 164 (363)
T ss_pred HHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 67788889999999999997542 1579999999975 999
Q ss_pred EEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc-------CCChHHHHHHHH
Q psy4398 129 AIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV-------FHNEADTIALCK 190 (306)
Q Consensus 129 ~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~-------g~~~~~~~~~a~ 190 (306)
+||||.+ +|.+|.|+|.||++++||.+++.||+++||++++ .||.+|++. |++.++..++++
T Consensus 165 gVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~ 244 (363)
T COG1902 165 GVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAK 244 (363)
T ss_pred EEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHH
Confidence 9999865 8999999999999999999999999999999995 589999997 345678999999
Q ss_pred HHHHcC-CcEEEEcccCCC--CCC--C-CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccCCC
Q psy4398 191 RLEACG-IIAIGVHGRTKA--ERP--R-HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYPV 260 (306)
Q Consensus 191 ~l~~~G-~d~i~v~~~~~~--~~~--~-~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~~ 260 (306)
.|++.| +|+|+++..... +.. . ..........+++.+++|+|++|+|+|++.++++++.+ |.+||++++|
T Consensus 245 ~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 245 ALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLAD 324 (363)
T ss_pred HHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcC
Confidence 999999 799999765432 111 1 11244667789999999999999999999999999974 5999999999
Q ss_pred CCchHHHHHHHHHhcC-CCCCcceehh
Q psy4398 261 EKLPKTILYAHCKYKR-FEVPKYETVQ 286 (306)
Q Consensus 261 p~~~~~~l~~~~~~~g-~~~~~~~~~~ 286 (306)
|+|+++. .+.++ ...+|+.|++
T Consensus 325 P~~~~k~----~~g~~~~~~~~~~~~~ 347 (363)
T COG1902 325 PDLVLKA----AEGRELEIRPCIYCNQ 347 (363)
T ss_pred ccHHHHH----HcCCCccccccccccc
Confidence 9988763 22222 2378999987
No 16
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=100.00 E-value=1.2e-35 Score=275.74 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=200.0
Q ss_pred ccccccccccCCceEEccCCCCCC-HHHHHHHHHcCCCEEEecceechhhhh----hh---------hhhhccccccccc
Q psy4398 20 ANANQANINYSNKIILAPMVRMNT-LPFRLLALDYGADLVYSEELVDHKLVK----TE---------RKVNDLLNTIDFV 85 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~-~~~r~~~~~~G~g~~~te~~~~~~~~~----~~---------~~~~~~l~~~~~~ 85 (306)
|++++.|++|+|||++|+.+-... ..++. ....|+|.++|++++.++... .. ....+++|++++.
T Consensus 2 L~v~~~Gl~l~nPv~~ASg~~~~~~e~~~~-~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~ 80 (325)
T cd04739 2 LSTTYLGLSLKNPLVASASPLSRNLDNIRR-LEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRY 80 (325)
T ss_pred ceEEECCEecCCCCEeCCcCCCCCHHHHHH-HHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccccccccc
Confidence 578899999999999998775344 44555 558999999999998775211 10 1145788999999
Q ss_pred CCCCCceeeec---CCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHH
Q psy4398 86 DPLDGSVVFRT---CPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161 (306)
Q Consensus 86 ~~~~~~~~~~~---~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv 161 (306)
|+|....+.+. .+..+.|+++||+|.++++|.++++.+++ |+|+||||++||+. ..+.+|..+ ++.+.+++
T Consensus 81 n~g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~--~~~~~g~~~---~~~~~eiv 155 (325)
T cd04739 81 NLGPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPT--DPDISGAEV---EQRYLDIL 155 (325)
T ss_pred CcCHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC--CCCcccchH---HHHHHHHH
Confidence 98764432221 12236799999999999999999999875 99999999999653 234455543 46789999
Q ss_pred HHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------CCCCC----CCcHHHHHHHH
Q psy4398 162 TTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------ERPRH----RNRIEMIRTLT 224 (306)
Q Consensus 162 ~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~~~~~----p~~~~~v~~i~ 224 (306)
+++++.+++||+||++ ++.++..++++.++++|+|+|+++++... +.+++ |..++++++++
T Consensus 156 ~~v~~~~~iPv~vKl~--p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~ 233 (325)
T cd04739 156 RAVKSAVTIPVAVKLS--PFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILS 233 (325)
T ss_pred HHHHhccCCCEEEEcC--CCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHH
Confidence 9999999999999999 66668999999999999999999887521 11223 23578999999
Q ss_pred hhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC-CC-CchHH--HHHHHHHhcCCC-CCccee
Q psy4398 225 QHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP-VE-KLPKT--ILYAHCKYKRFE-VPKYET 284 (306)
Q Consensus 225 ~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~-~p-~~~~~--~l~~~~~~~g~~-~~~~~~ 284 (306)
+.+++|||++|||.|.+|+.+.+..|+ |+||+++. +| ...++ +|++||+++||+ ..++.+
T Consensus 234 ~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~~i~e~~G 301 (325)
T cd04739 234 GRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYESVQQLRG 301 (325)
T ss_pred cccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCCCHHHHhc
Confidence 999999999999999999999998754 99999977 79 55555 999999999954 333333
No 17
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=2e-35 Score=276.19 Aligned_cols=256 Identities=16% Similarity=0.132 Sum_probs=204.5
Q ss_pred eeeccc-ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh--hh-----hhhccccccccc
Q psy4398 14 FYVLDM-ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT--ER-----KVNDLLNTIDFV 85 (306)
Q Consensus 14 ~~~~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~--~~-----~~~~~l~~~~~~ 85 (306)
|+..++ ++++++|++|+|||++|++...+...++.+ ...|+|.++|++++.++.... .+ ...+++|++++.
T Consensus 42 ~~~~~~~L~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~-~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~ 120 (344)
T PRK05286 42 LTYTDPRLPVTVMGLTFPNPVGLAAGFDKNGEAIDAL-GALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFN 120 (344)
T ss_pred cCCCCCCCceEECCEECCCCCEECCCCCCChHHHHHH-HHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCC
Confidence 344455 899999999999999999987666556664 489999999999997644311 11 124788999999
Q ss_pred CCCCCceeeecCCC-CCCceEEEecCC-------CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHH
Q psy4398 86 DPLDGSVVFRTCPR-EKNKIILQIGTA-------DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157 (306)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~p~ivql~g~-------~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~ 157 (306)
|+|....+.+..+. .+.|+++||+++ ..++|++.++.+.+++|+||||++||+.. |....++++.+
T Consensus 121 n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~------g~~~~~~~~~~ 194 (344)
T PRK05286 121 NDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP------GLRDLQYGEAL 194 (344)
T ss_pred CHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC------CcccccCHHHH
Confidence 88754433222111 467999999875 57899999998887899999999999953 23347899999
Q ss_pred HHHHHHHHhccc-----ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------CCCCCC----C
Q psy4398 158 CNILTTLISNLS-----IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------ERPRHR----N 215 (306)
Q Consensus 158 ~eiv~~v~~~~~-----~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~~~~~p----~ 215 (306)
.++++++++.++ +||+||++.+.+.++..++++.++++|+|+|++++++.+ +.++++ .
T Consensus 195 ~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~ 274 (344)
T PRK05286 195 DELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFER 274 (344)
T ss_pred HHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHH
Confidence 999999999987 999999997666678999999999999999999987531 234443 3
Q ss_pred cHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCch-HH--HHHHHHHhcC
Q psy4398 216 RIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLP-KT--ILYAHCKYKR 276 (306)
Q Consensus 216 ~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~-~~--~l~~~~~~~g 276 (306)
.|++++++++.+ ++|||++|||.|.+|+.+.+..| ||+||+++. ||.+. ++ +|++||+++|
T Consensus 275 ~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 275 STEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 788999999999 89999999999999999999874 599999976 69554 44 9999999986
No 18
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=100.00 E-value=3.8e-35 Score=281.82 Aligned_cols=260 Identities=18% Similarity=0.168 Sum_probs=200.7
Q ss_pred ccccccccccCCceEEccCCCCCC-HHHHHHHHHcCCCEEEecceechhhhhh--hh---hhhcccccccccCCCCCc--
Q psy4398 20 ANANQANINYSNKIILAPMVRMNT-LPFRLLALDYGADLVYSEELVDHKLVKT--ER---KVNDLLNTIDFVDPLDGS-- 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~-~~~r~~~~~~G~g~~~te~~~~~~~~~~--~~---~~~~~l~~~~~~~~~~~~-- 91 (306)
|++++.|++|+|||++|+++-... ...+.+. +.|+|.+++++++ .+.... .+ ...+..+.+++.|++...
T Consensus 4 L~~~~~Gl~l~nPv~~aag~~~~~~~~~~~~~-~~g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~ 81 (420)
T PRK08318 4 LSITFCGIKSPNPFWLASAPPTNKYYNVARAF-EAGWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDR 81 (420)
T ss_pred ceEEECCEecCCCcEeCCcCCCCCHHHHHHHH-HhCCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCccccccc
Confidence 678999999999999999974333 3345544 5799999999998 222211 11 112334556677764311
Q ss_pred ----e---eeecCCC-CCCceEEEecCC-CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHH
Q psy4398 92 ----V---VFRTCPR-EKNKIILQIGTA-DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161 (306)
Q Consensus 92 ----~---~~~~~~~-~~~p~ivql~g~-~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv 161 (306)
. +.+..+. .+.|+++||+|. ++++|.++++.+++ |+|+||||++||++ ....+.|+.++++++.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~-~~~~~~g~~~~~~~~~~~~i~ 160 (420)
T PRK08318 82 PLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHG-MSERGMGSAVGQVPELVEMYT 160 (420)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-ccccCCcccccCCHHHHHHHH
Confidence 0 1111111 247899999998 99999999999876 99999999999994 344568899999999999999
Q ss_pred HHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEE---------------------cccCCCCCCCCCC----c
Q psy4398 162 TTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV---------------------HGRTKAERPRHRN----R 216 (306)
Q Consensus 162 ~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v---------------------~~~~~~~~~~~p~----~ 216 (306)
+++++.+.+||+||++ ++.++..++++.++++|+|+|++ |+++..+.+++++ .
T Consensus 161 ~~v~~~~~~Pv~vKl~--p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~ 238 (420)
T PRK08318 161 RWVKRGSRLPVIVKLT--PNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIA 238 (420)
T ss_pred HHHHhccCCcEEEEcC--CCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHH
Confidence 9999999999999999 67777899999999999999994 2333445667765 5
Q ss_pred HHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CC-CchHH--HHHHHHHhcCCC-CCccee
Q psy4398 217 IEMIRTLTQHL---KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VE-KLPKT--ILYAHCKYKRFE-VPKYET 284 (306)
Q Consensus 217 ~~~v~~i~~~~---~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p-~~~~~--~l~~~~~~~g~~-~~~~~~ 284 (306)
|++++++++++ ++|||++|||.|.+|+.+.+..| ||+||+++. +| ...++ +|++||+++|++ ...+.+
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~~si~e~iG 317 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGFASLEDMVG 317 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcCcchHHHHhc
Confidence 99999999987 79999999999999999999875 599999877 78 44444 999999999965 444443
No 19
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=4.8e-35 Score=273.56 Aligned_cols=244 Identities=16% Similarity=0.181 Sum_probs=193.4
Q ss_pred ccccccc-cccCCceEEccCCC--------CCCHHHHHHH--HHcCCCEEEecceechhhhhhhh---hhhccccccccc
Q psy4398 20 ANANQAN-INYSNKIILAPMVR--------MNTLPFRLLA--LDYGADLVYSEELVDHKLVKTER---KVNDLLNTIDFV 85 (306)
Q Consensus 20 ~~~~~~~-l~l~n~i~lAPm~~--------~t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~---~~~~~l~~~~~~ 85 (306)
.|++|++ ++|||||++|||.. +|+.....+. +++|+|+++||.+.+.+.....+ ...++ .+.+++
T Consensus 3 ~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~-~~d~~i 81 (338)
T cd04733 3 QPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVL-ESGEDL 81 (338)
T ss_pred CCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCccc-CCHHHH
Confidence 5789994 99999999999973 2334444443 25789999999887765432222 11122 222233
Q ss_pred CCCCCceeeecCCCCCCceEEEecCCC-----------------------------------------HHHHHHHHHHHh
Q psy4398 86 DPLDGSVVFRTCPREKNKIILQIGTAD-----------------------------------------PERALEAAKKVE 124 (306)
Q Consensus 86 ~~~~~~~~~~~~~~~~~p~ivql~g~~-----------------------------------------~~~~~~aa~~~~ 124 (306)
.. ++.+.+.+|+.|.++++||++.. .++|++||++++
T Consensus 82 ~~--~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~ 159 (338)
T cd04733 82 EA--FREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQ 159 (338)
T ss_pred HH--HHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 22 56678888889999999986510 257999999997
Q ss_pred c-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEec------cCCChHHHH
Q psy4398 125 H-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIR------VFHNEADTI 186 (306)
Q Consensus 125 ~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir------~g~~~~~~~ 186 (306)
+ |||+||||++| |..|.|+|+||+++++|++++.|++++||++++ +||.+|++ .|++.++..
T Consensus 160 ~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~ 239 (338)
T cd04733 160 EAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDAL 239 (338)
T ss_pred HcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHH
Confidence 5 99999999996 999999999999999999999999999999994 79999998 368888999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCC-----------CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hh
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPR-----------HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NC 251 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~-----------~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v 251 (306)
++++.|++.|+|+|+||+++..+... ....++++++|++++++||+++|+|.++++++++++. +|
T Consensus 240 ~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V 319 (338)
T cd04733 240 EVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred HHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 99999999999999999886433221 1123678889999999999999999999999999986 46
Q ss_pred hhccccCCCCCchHH
Q psy4398 252 AFLRNHYPVEKLPKT 266 (306)
Q Consensus 252 ~vGrall~~p~~~~~ 266 (306)
++||++++||+++++
T Consensus 320 ~lgR~~iadP~~~~k 334 (338)
T cd04733 320 GLARPLALEPDLPNK 334 (338)
T ss_pred eeChHhhhCccHHHH
Confidence 999999999988765
No 20
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6e-35 Score=265.16 Aligned_cols=260 Identities=20% Similarity=0.211 Sum_probs=209.6
Q ss_pred ccccccccccCCceEEccCCCC-CCHHHHHHHHHcCCCEEEecceechhhhhh-----hh--hhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVRM-NTLPFRLLALDYGADLVYSEELVDHKLVKT-----ER--KVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~-t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~ 91 (306)
+++++.|++|+||+++|++++. +...++.+. ..|+|.+++++++.++.... .+ ...+++|.+++.|+|...
T Consensus 2 l~~~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~-~~g~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~ 80 (310)
T COG0167 2 LSTEILGLKFPNPLGLAAGFDGKNGEELDALA-ALGFGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADA 80 (310)
T ss_pred CceeecceecCCCCeEcccCCccCHHHHHHHH-hcCCceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHH
Confidence 5678999999999999999986 445566655 55699999999998764321 11 226789999999998755
Q ss_pred eeee---cCCC---CCCceEEEecCCCHHHHHHHHHHHhc-C-CCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 92 VVFR---TCPR---EKNKIILQIGTADPERALEAAKKVEH-D-VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 92 ~~~~---~~~~---~~~p~ivql~g~~~~~~~~aa~~~~~-g-~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
.+.+ ...+ .+.+++.+..+...++|.+.+..++. + +|+||||++|||. + + |..+.++++.+.+++++
T Consensus 81 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt---~-g-~~~l~~~~e~l~~l~~~ 155 (310)
T COG0167 81 FLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNT---P-G-GRALGQDPELLEKLLEA 155 (310)
T ss_pred HHHHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCC---C-C-hhhhccCHHHHHHHHHH
Confidence 4332 1111 34568888888899999999998875 6 8999999999994 2 2 77888899999999999
Q ss_pred HHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC-----------------CCCCCC----CCcHHHHHH
Q psy4398 164 LISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK-----------------AERPRH----RNRIEMIRT 222 (306)
Q Consensus 164 v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~-----------------~~~~~~----p~~~~~v~~ 222 (306)
+++...+||.||++ |+.++..++|+.++++|+|+|++...+. .+.+++ |..++++++
T Consensus 156 vk~~~~~Pv~vKl~--P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~ 233 (310)
T COG0167 156 VKAATKVPVFVKLA--PNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAE 233 (310)
T ss_pred HHhcccCceEEEeC--CCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHH
Confidence 99999999999999 7889999999999999999999765221 123333 457899999
Q ss_pred HHhhCC--CcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CC-CchHH--HHHHHHHhcCCCCCcceehhhccceee
Q psy4398 223 LTQHLK--IPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VE-KLPKT--ILYAHCKYKRFEVPKYETVQYEKLFRS 293 (306)
Q Consensus 223 i~~~~~--ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p-~~~~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~ 293 (306)
++++++ +|||++|||.|.+|+.+.+.+| +|+|++++. +| .+.++ +|.+||+++| |+|
T Consensus 234 l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g--------------~~s 299 (310)
T COG0167 234 LYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKG--------------FES 299 (310)
T ss_pred HHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcC--------------CCC
Confidence 999986 9999999999999999999875 499999865 59 55555 9999999999 888
Q ss_pred EEEEcCcc
Q psy4398 294 LVTVNGKQ 301 (306)
Q Consensus 294 ~~~~~~~~ 301 (306)
+++++|.-
T Consensus 300 i~d~iG~~ 307 (310)
T COG0167 300 IQDIIGSA 307 (310)
T ss_pred HHHHhchh
Confidence 88887753
No 21
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=2.7e-34 Score=254.47 Aligned_cols=215 Identities=23% Similarity=0.300 Sum_probs=167.8
Q ss_pred ceEEccCCCCCCHHHHH-HHHHcCCCEE------Eecceechhhhhhhhhhhcccccc--cccCCCCCceeeecCCCCCC
Q psy4398 32 KIILAPMVRMNTLPFRL-LALDYGADLV------YSEELVDHKLVKTERKVNDLLNTI--DFVDPLDGSVVFRTCPREKN 102 (306)
Q Consensus 32 ~i~lAPm~~~t~~~~r~-~~~~~G~g~~------~te~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~ 102 (306)
||++|||.+.||.+||. ++..+|++++ .+++..+..+....+.. ++.+. .++ +......++.+.
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~e--f~~~~~~~~~-----~~~~~~~~~~~~ 73 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKE--FLPDDPLEFI-----EGEIKALKDSNV 73 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCcc--ccccchHHHH-----HHHHHHhhccCC
Confidence 78999999999999999 4555565444 22333232333222211 11110 011 011112233467
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
|+++||.|++++++.++++.+++++|+||||+|||++.+.+.++|+.++++|+.+.++++++++ .++||+||+|.+++
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~- 151 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD- 151 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-
Confidence 9999999999999999999998777999999999999988999999999999999999999998 59999999999887
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
++..++++.++++|+|.||++.+... .+.+|+.+++++ +++|||+||||.|.++++++++.| ||+||+ .
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g----~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~--~ 223 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPG----NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVARA--S 223 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCC----CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC--C
Confidence 78999999999999999988654321 356899998887 789999999999999999999875 599999 8
Q ss_pred CCCc
Q psy4398 260 VEKL 263 (306)
Q Consensus 260 ~p~~ 263 (306)
+|++
T Consensus 224 ~p~~ 227 (233)
T cd02911 224 LPEN 227 (233)
T ss_pred CchH
Confidence 8843
No 22
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=100.00 E-value=4.7e-34 Score=262.55 Aligned_cols=241 Identities=18% Similarity=0.173 Sum_probs=190.5
Q ss_pred ccccccccccCCceEEccCC-CCCCHHHHHHHHHcCCCEEEecceech-hhhh--hhh---hhhcccccccccCCC----
Q psy4398 20 ANANQANINYSNKIILAPMV-RMNTLPFRLLALDYGADLVYSEELVDH-KLVK--TER---KVNDLLNTIDFVDPL---- 88 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~-~~t~~~~r~~~~~~G~g~~~te~~~~~-~~~~--~~~---~~~~~l~~~~~~~~~---- 88 (306)
+++++.|++|+|||++|+++ +.+...++.+. ..|+|++++++++.+ +... ..+ ...+..|.++|.|.+
T Consensus 2 l~~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~-~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~ 80 (299)
T cd02940 2 LSVTFCGIKFPNPFGLASAPPTTSYPMIRRAF-EAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISE 80 (299)
T ss_pred CceEECCEEcCCCCEeCCcCCCCCHHHHHHHH-HhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccc
Confidence 57889999999999999987 34445566655 569999999999988 4332 111 123445677777743
Q ss_pred --CCce---eeecCCCC-CCceEEEecCC-CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHH
Q psy4398 89 --DGSV---VFRTCPRE-KNKIILQIGTA-DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNI 160 (306)
Q Consensus 89 --~~~~---~~~~~~~~-~~p~ivql~g~-~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~ei 160 (306)
.... +.+..... +.|+++|++|. ++++|.++++++++ |+|+||||++||+. ....++|+.++++++.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~-~~~~~~G~~l~~~~~~~~~i 159 (299)
T cd02940 81 KPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG-MPERGMGAAVGQDPELVEEI 159 (299)
T ss_pred cCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCCchhhccCHHHHHHH
Confidence 1111 11111112 57999999998 99999999999975 99999999999997 34567899999999999999
Q ss_pred HHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc---------------------ccCCCCCCCCCCc---
Q psy4398 161 LTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH---------------------GRTKAERPRHRNR--- 216 (306)
Q Consensus 161 v~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~---------------------~~~~~~~~~~p~~--- 216 (306)
++++++.+++||+||++ ++.++..++++.++++|+|+|+++ +++..+.+++++.
T Consensus 160 v~~v~~~~~~Pv~vKl~--~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~ 237 (299)
T cd02940 160 CRWVREAVKIPVIAKLT--PNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPI 237 (299)
T ss_pred HHHHHHhcCCCeEEECC--CCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchH
Confidence 99999999999999999 666789999999999999999853 3444556776655
Q ss_pred -HHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCch
Q psy4398 217 -IEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLP 264 (306)
Q Consensus 217 -~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~ 264 (306)
|++++++++++ ++|||++|||.|.+|+.+.+..| ||+||+++. +|...
T Consensus 238 ~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~ 292 (299)
T cd02940 238 ALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIV 292 (299)
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHH
Confidence 89999999999 89999999999999999999875 599999866 88443
No 23
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=100.00 E-value=9.8e-35 Score=275.02 Aligned_cols=265 Identities=15% Similarity=0.155 Sum_probs=200.9
Q ss_pred ccccccccccCCceEEccCCC--C-------CCHHHHHHH--HHcCCCEEEecceechhhhhhh--hhhhc-cccccccc
Q psy4398 20 ANANQANINYSNKIILAPMVR--M-------NTLPFRLLA--LDYGADLVYSEELVDHKLVKTE--RKVND-LLNTIDFV 85 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--~-------t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~--~~~~~-~l~~~~~~ 85 (306)
.|+++++++||||+++|||.. . |+.....+. +++|+|+++||.+.+.+..... ..... .++..+.+
T Consensus 3 ~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i 82 (382)
T cd02931 3 EPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFI 82 (382)
T ss_pred CCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHh
Confidence 578999999999999999962 2 223333332 3578999999988776532111 01101 12222222
Q ss_pred CCCCCceeeecCCCCCCceEEEecCC-C----------------------------------------HHHHHHHHHHHh
Q psy4398 86 DPLDGSVVFRTCPREKNKIILQIGTA-D----------------------------------------PERALEAAKKVE 124 (306)
Q Consensus 86 ~~~~~~~~~~~~~~~~~p~ivql~g~-~----------------------------------------~~~~~~aa~~~~ 124 (306)
. .++.+.+++|++|.++++||++. . .++|+++|++++
T Consensus 83 ~--~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~ 160 (382)
T cd02931 83 R--TAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAK 160 (382)
T ss_pred H--HHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 2 15678888888999999999642 0 156999999997
Q ss_pred c-CCCEEEEcc---C-------CCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc-------------
Q psy4398 125 H-DVAAIDINM---G-------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------------- 178 (306)
Q Consensus 125 ~-g~d~veln~---g-------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------------- 178 (306)
+ |||+||||+ | +|..|.|+|+||+++++|++++.||+++||+++ ++||.+|++.
T Consensus 161 ~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~ 240 (382)
T cd02931 161 EAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALP 240 (382)
T ss_pred HcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccccc
Confidence 5 999999998 5 488999999999999999999999999999998 5799999984
Q ss_pred -------CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC-------CC-CCcHHHHHHHHhhCCCcEEEecCCCCHHHH
Q psy4398 179 -------FHNEADTIALCKRLEACGIIAIGVHGRTKAERP-------RH-RNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243 (306)
Q Consensus 179 -------g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~-------~~-p~~~~~v~~i~~~~~ipvia~GGI~s~~~~ 243 (306)
|++.++..++++.++++|+|+|++|+++....+ .+ ...+++++++++.+++|||++|+|++++++
T Consensus 241 ~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~ 320 (382)
T cd02931 241 GEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELA 320 (382)
T ss_pred ccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHH
Confidence 345678999999999999999999987643211 11 123678899999999999999999999999
Q ss_pred HHHHHh----hhhhccccCCCCCchHHHHHHHHHhcCCC-CCcceehh--hccc
Q psy4398 244 GGVFSL----NCAFLRNHYPVEKLPKTILYAHCKYKRFE-VPKYETVQ--YEKL 290 (306)
Q Consensus 244 ~~~l~~----~v~vGrall~~p~~~~~~l~~~~~~~g~~-~~~~~~~~--~~~~ 290 (306)
+++++. +|++||+++.||+++++. .+.+.-+ .+|+.|++ +.+.
T Consensus 321 ~~~l~~g~~D~V~~gR~~ladP~l~~k~----~~g~~~~i~~Ci~Cn~~C~~~~ 370 (382)
T cd02931 321 SEAINEGIADMISLGRPLLADPDVVNKI----RRGRFKNIRPCISCHDGCLGRM 370 (382)
T ss_pred HHHHHcCCCCeeeechHhHhCccHHHHH----HcCCcccCcCChhhHHHHhhHh
Confidence 999985 569999999999888663 2233222 67999986 5544
No 24
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=1.7e-34 Score=271.11 Aligned_cols=263 Identities=14% Similarity=0.101 Sum_probs=197.3
Q ss_pred ccccccc-cccCCceEEccCCC--------CCCHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQAN-INYSNKIILAPMVR--------MNTLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~-l~l~n~i~lAPm~~--------~t~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.|+++++ ++|||||++|||.. +|+.....+.+++ |+|+++||.+.+.+.........+ +.+..++..
T Consensus 3 ~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~-~~~d~~i~~-- 79 (353)
T cd04735 3 EPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFS-ADDDSDIPG-- 79 (353)
T ss_pred CCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCce-ecChhhhHH--
Confidence 4789998 99999999999972 2344444443322 599999999887654322211112 223333332
Q ss_pred CceeeecCCCCCCceEEEecCCC----------------------------------------HHHHHHHHHHHhc-CCC
Q psy4398 90 GSVVFRTCPREKNKIILQIGTAD----------------------------------------PERALEAAKKVEH-DVA 128 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~----------------------------------------~~~~~~aa~~~~~-g~d 128 (306)
++.+.+.+|++|.++++||++.+ .++|+++|+++++ |||
T Consensus 80 ~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfD 159 (353)
T cd04735 80 LRKLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFD 159 (353)
T ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 67788888889999999996421 2579999999975 999
Q ss_pred EEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc----ccEEEEecc--------CCChHHHHH
Q psy4398 129 AIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRV--------FHNEADTIA 187 (306)
Q Consensus 129 ~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~----~pv~vKir~--------g~~~~~~~~ 187 (306)
+||||++ ||..|.|+|+||+++++|.+++.||+++||++++ .++.|++|+ |.+.++..+
T Consensus 160 gVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~ 239 (353)
T cd04735 160 GVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLA 239 (353)
T ss_pred EEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHH
Confidence 9999975 7999999999999999999999999999999986 444444444 235678999
Q ss_pred HHHHHHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
+++.|+++|+|+|++++..... ....+..++.++.+++.+ ++|||++|||+|+++++++++. ++++||++++|
T Consensus 240 i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liad 319 (353)
T cd04735 240 LVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVD 319 (353)
T ss_pred HHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhC
Confidence 9999999999999998754322 122233567778888887 8999999999999999999986 56999999999
Q ss_pred CCchHHHHHHHHHhcCCC-CCcceehhhcc
Q psy4398 261 EKLPKTILYAHCKYKRFE-VPKYETVQYEK 289 (306)
Q Consensus 261 p~~~~~~l~~~~~~~g~~-~~~~~~~~~~~ 289 (306)
|++++.. .+.+..+ ..|+.+.+|..
T Consensus 320 Pdl~~k~----~~G~~~~ir~ci~~~~~~~ 345 (353)
T cd04735 320 PDWVEKI----KEGREDEINLEIDPDDLEE 345 (353)
T ss_pred ccHHHHH----HcCChhhhhhcCCHHHHHh
Confidence 9888653 2222233 57888877653
No 25
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=1.2e-34 Score=269.80 Aligned_cols=244 Identities=19% Similarity=0.237 Sum_probs=195.8
Q ss_pred ccccccccccCCceEEccCCC--------CCCHHHHHHHH--HcCCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR--------MNTLPFRLLAL--DYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--------~t~~~~r~~~~--~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.|+++++++|+|||++|||+. +|+...+.+.+ ++|+|+++||.+.+.+.....+...++++ ...+..
T Consensus 2 ~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~-~~~~~~-- 78 (327)
T cd02803 2 SPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYD-DEQIPG-- 78 (327)
T ss_pred CCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCC-HHHHHH--
Confidence 478999999999999999983 23344444432 56899999999987765433222223322 223322
Q ss_pred CceeeecCCCCCCceEEEecCCC--------------------------------------HHHHHHHHHHHhc-CCCEE
Q psy4398 90 GSVVFRTCPREKNKIILQIGTAD--------------------------------------PERALEAAKKVEH-DVAAI 130 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~--------------------------------------~~~~~~aa~~~~~-g~d~v 130 (306)
++.+.+.+|+.+.++++||++.+ .++|+++|+++++ |||+|
T Consensus 79 ~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgv 158 (327)
T cd02803 79 LRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGV 158 (327)
T ss_pred HHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 66778888888999999996421 2679999998875 99999
Q ss_pred EEccC---------CCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccC------CChHHHHHHHHHHH
Q psy4398 131 DINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVF------HNEADTIALCKRLE 193 (306)
Q Consensus 131 eln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g------~~~~~~~~~a~~l~ 193 (306)
|||++ ||..|.++|+||+++++|++++.|+++++|+.+ ++||.+|++.. ++.++..++++.++
T Consensus 159 eih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~ 238 (327)
T cd02803 159 EIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALE 238 (327)
T ss_pred EEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHH
Confidence 99988 788899999999999999999999999999998 68999999952 46788999999999
Q ss_pred HcCCcEEEEcccCCCCCCC--------CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCC
Q psy4398 194 ACGIIAIGVHGRTKAERPR--------HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVE 261 (306)
Q Consensus 194 ~~G~d~i~v~~~~~~~~~~--------~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p 261 (306)
+.|+|+|+++++....... .+.++++++++++.+++||+++|||.+.++++++++. ++++||+++.||
T Consensus 239 ~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP 318 (327)
T cd02803 239 EAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADP 318 (327)
T ss_pred HcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCc
Confidence 9999999999876543221 2457889999999999999999999999999999987 359999999999
Q ss_pred CchHH
Q psy4398 262 KLPKT 266 (306)
Q Consensus 262 ~~~~~ 266 (306)
++++.
T Consensus 319 ~l~~k 323 (327)
T cd02803 319 DLPNK 323 (327)
T ss_pred cHHHH
Confidence 88765
No 26
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=100.00 E-value=2.6e-34 Score=270.08 Aligned_cols=265 Identities=15% Similarity=0.101 Sum_probs=198.4
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|||||++|||.. .|+...+.+. +++|+|+++||.+.+.+.........+ +.+..++.. +
T Consensus 3 ~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~-~~~~~~i~~--~ 79 (353)
T cd02930 3 SPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPV-LNSPRQAAG--H 79 (353)
T ss_pred CCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcc-cCCHHHHHH--H
Confidence 478999999999999999972 2333344433 257899999998877654222221112 223333322 5
Q ss_pred ceeeecCCCCCCceEEEecCCC----------------------------------HHHHHHHHHHHhc-CCCEEEEccC
Q psy4398 91 SVVFRTCPREKNKIILQIGTAD----------------------------------PERALEAAKKVEH-DVAAIDINMG 135 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~~----------------------------------~~~~~~aa~~~~~-g~d~veln~g 135 (306)
+.+.+.+|+.|.++++||++.+ .++|+++|+++++ |||+||||.+
T Consensus 80 ~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~a 159 (353)
T cd02930 80 RLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGS 159 (353)
T ss_pred HHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 6678888889999999996421 2679999999874 9999999875
Q ss_pred ---------CCccccccCCccccccCChHHHHHHHHHHHhccccc--EEEEecc------CCChHHHHHHHHHHHHcCCc
Q psy4398 136 ---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP--VSCKIRV------FHNEADTIALCKRLEACGII 198 (306)
Q Consensus 136 ---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p--v~vKir~------g~~~~~~~~~a~~l~~~G~d 198 (306)
||..|.|+|+||+++++|++++.++++++|+.++.+ |.+|++. |++.+++.++++.|+++|+|
T Consensus 160 hGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d 239 (353)
T cd02930 160 EGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGAD 239 (353)
T ss_pred cchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999999999654 5555553 24677899999999999999
Q ss_pred EEEEcccCCCC------CCCCC-CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCCchHHH
Q psy4398 199 AIGVHGRTKAE------RPRHR-NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEKLPKTI 267 (306)
Q Consensus 199 ~i~v~~~~~~~------~~~~p-~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~~~~~~ 267 (306)
+|+++....+. .+.++ ..++.++++++.+++||+++|++.++++++++++. ++++||++++||+++++.
T Consensus 240 ~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~ 319 (353)
T cd02930 240 ILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKA 319 (353)
T ss_pred EEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHH
Confidence 99996432111 11111 23566789999999999999999999999999986 569999999999888764
Q ss_pred HHHHHHhcCCC-CCcceehh--hccce
Q psy4398 268 LYAHCKYKRFE-VPKYETVQ--YEKLF 291 (306)
Q Consensus 268 l~~~~~~~g~~-~~~~~~~~--~~~~~ 291 (306)
.+. +.-+ ..|+.|++ +.+.+
T Consensus 320 ~~g----~~~~i~~Ci~cn~~C~~~~~ 342 (353)
T cd02930 320 AAG----RADEINTCIACNQACLDHIF 342 (353)
T ss_pred HhC----CcccCcCchhhHHHHHHHhc
Confidence 333 2222 57999987 55544
No 27
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=100.00 E-value=6.7e-34 Score=266.84 Aligned_cols=256 Identities=15% Similarity=0.122 Sum_probs=196.8
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechh-hh-h-hhh---hhhccc-----ccccccCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHK-LV-K-TER---KVNDLL-----NTIDFVDPL 88 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~-~~-~-~~~---~~~~~l-----~~~~~~~~~ 88 (306)
|++++.|++|+|||++|+.+..++..+...+...|+|.++|++++.++ .. . ..+ ...+++ +.+++.|++
T Consensus 11 Lst~~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~N~~ 90 (385)
T PLN02495 11 LSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNIE 90 (385)
T ss_pred ceEEECCEEcCCCcEeCCccCCCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccccccccccCcc
Confidence 789999999999999999997666666444446799999999998654 21 1 112 123444 567777773
Q ss_pred ------CCceee--ecC-CCC-CCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHH
Q psy4398 89 ------DGSVVF--RTC-PRE-KNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDI 156 (306)
Q Consensus 89 ------~~~~~~--~~~-~~~-~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~ 156 (306)
....+. ... ++. +.|+|+||.+ .++++|.+.++++++ |+|+||||++|||....+ +.|..+.++++.
T Consensus 91 ~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r-~~g~~~gq~~e~ 169 (385)
T PLN02495 91 LISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPER-KMGAAVGQDCDL 169 (385)
T ss_pred cccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcC-ccchhhccCHHH
Confidence 211111 112 223 4699999966 899999999999986 899999999999964333 357889999999
Q ss_pred HHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC---------------------CCCCCC--
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK---------------------AERPRH-- 213 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------~~~~~~-- 213 (306)
+.++++++++.+.+||+||++ ++.++..++++.++++|+|+|++..+.. .+.+++
T Consensus 170 ~~~i~~~Vk~~~~iPv~vKLs--Pn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~a 247 (385)
T PLN02495 170 LEEVCGWINAKATVPVWAKMT--PNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKA 247 (385)
T ss_pred HHHHHHHHHHhhcCceEEEeC--CChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchh
Confidence 999999999999999999999 7888899999999999999999754321 011232
Q ss_pred --CCcHHHHHHHHhhC------CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC-C-CchHH--HHHHHHHhcCCC
Q psy4398 214 --RNRIEMIRTLTQHL------KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV-E-KLPKT--ILYAHCKYKRFE 278 (306)
Q Consensus 214 --p~~~~~v~~i~~~~------~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~-p-~~~~~--~l~~~~~~~g~~ 278 (306)
|..+..++++++.+ ++|||++|||.|.+|+.+.+.+|+ |++++++.+ | ...++ +|++||+++||+
T Consensus 248 lkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~~~G~~ 327 (385)
T PLN02495 248 VRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMKKHNFS 327 (385)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHHHcCCC
Confidence 23566677787776 499999999999999999998864 999998765 8 44444 999999999943
No 28
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=7.9e-34 Score=264.88 Aligned_cols=251 Identities=14% Similarity=0.107 Sum_probs=195.9
Q ss_pred ccccccccccCCceEEccCCCCCCHH-HHHHHHHcCCCEEEecceechhhhh--------------hhhhhhcccccccc
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLP-FRLLALDYGADLVYSEELVDHKLVK--------------TERKVNDLLNTIDF 84 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~-~r~~~~~~G~g~~~te~~~~~~~~~--------------~~~~~~~~l~~~~~ 84 (306)
|+++++|++|+|||++|+.+-..+.. ++. +...|+|.++|++++.++... ......+++|++++
T Consensus 3 l~~~~~Gl~l~nPv~~asg~~~~~~~~~~~-~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl 81 (334)
T PRK07565 3 LSTTYLGLTLRNPLVASASPLSESVDNVKR-LEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAK 81 (334)
T ss_pred ceEEECCEecCCCCEecCcCCCCCHHHHHH-HHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhc
Confidence 67899999999999999999644444 454 558999999999998654421 01122367889999
Q ss_pred cCCCCCceeee--cC-CCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHH
Q psy4398 85 VDPLDGSVVFR--TC-PREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNI 160 (306)
Q Consensus 85 ~~~~~~~~~~~--~~-~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~ei 160 (306)
.|+|...++.. .. .+.+.|+++||++.++++|.++++.+++ |+|+||||++||+.. .+..|.. .++.+.++
T Consensus 82 ~n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~--~~~~g~~---~~~~~~ei 156 (334)
T PRK07565 82 FYVGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTD--PDISGAE---VEQRYLDI 156 (334)
T ss_pred cCcCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC--CCCcccc---HHHHHHHH
Confidence 99876433221 12 2335799999999999999999998875 999999999997753 2333432 34567899
Q ss_pred HHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------CCCCCC----CcHHHHHHH
Q psy4398 161 LTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------ERPRHR----NRIEMIRTL 223 (306)
Q Consensus 161 v~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~~~~~p----~~~~~v~~i 223 (306)
++++++.+++||+||++ ++.++..++++.++++|+|+|+++++... ..++++ ..+++++++
T Consensus 157 l~~v~~~~~iPV~vKl~--p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~ 234 (334)
T PRK07565 157 LRAVKSAVSIPVAVKLS--PYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAIL 234 (334)
T ss_pred HHHHHhccCCcEEEEeC--CCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHH
Confidence 99999999999999999 55567899999999999999999887521 112332 357889999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CC-CchHH--HHHHHHHhcCCC
Q psy4398 224 TQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VE-KLPKT--ILYAHCKYKRFE 278 (306)
Q Consensus 224 ~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p-~~~~~--~l~~~~~~~g~~ 278 (306)
++.+++|||++|||.|.+|+.+.+..| ||+||+++. +| ...++ +|++||+++||+
T Consensus 235 ~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~~g~~ 296 (334)
T PRK07565 235 SGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWMERHGYE 296 (334)
T ss_pred HhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999875 499999987 68 44444 999999999954
No 29
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=5.4e-34 Score=266.84 Aligned_cols=247 Identities=13% Similarity=0.111 Sum_probs=191.4
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHH--HHcCCCEEEecceechhhhhhh-hhhhcccccccccCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLA--LDYGADLVYSEELVDHKLVKTE-RKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 89 (306)
.|++++++++||||+++||.. +|+..+..+. +++|+|+++||.+.+.+..... ....+ +.+.+++..
T Consensus 3 ~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~-~~~d~~i~~-- 79 (361)
T cd04747 3 TPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPR-FHGEDALAG-- 79 (361)
T ss_pred CCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCc-cCCHHHHHH--
Confidence 478999999999999999972 2444444442 2578999999988775321111 11112 222223322
Q ss_pred CceeeecCCCCCCceEEEecCCC----------------------------------------HHHHHHHHHHHhc-CCC
Q psy4398 90 GSVVFRTCPREKNKIILQIGTAD----------------------------------------PERALEAAKKVEH-DVA 128 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~----------------------------------------~~~~~~aa~~~~~-g~d 128 (306)
++.+.+.+|+.|.++++||++.+ .++|+++|+++++ |||
T Consensus 80 ~~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfD 159 (361)
T cd04747 80 WKKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFD 159 (361)
T ss_pred HHHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 56678888888999999995411 1479999999975 999
Q ss_pred EEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc----------CCChHHHHH
Q psy4398 129 AIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV----------FHNEADTIA 187 (306)
Q Consensus 129 ~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~----------g~~~~~~~~ 187 (306)
+||||++| |..|.|+|+||+++++|.+++.||+++||++++ +||.+|++. |.+.+++.+
T Consensus 160 gVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~ 239 (361)
T cd04747 160 GIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEA 239 (361)
T ss_pred EEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHH
Confidence 99999998 999999999999999999999999999999984 799999994 245677899
Q ss_pred HHHHHHHcCCcEEEEcccCC-CCCCCCCCcHHHHHHHHhhCCCcEEEecCC------------------CCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTK-AERPRHRNRIEMIRTLTQHLKIPVIANGGS------------------KEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~-~~~~~~p~~~~~v~~i~~~~~ipvia~GGI------------------~s~~~~~~~l~ 248 (306)
+++.+++.|+|+|+++.... ...+.+ .++++..++++.+++||+++|+| +|+++++++++
T Consensus 240 ~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 318 (361)
T cd04747 240 LLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLE 318 (361)
T ss_pred HHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHH
Confidence 99999999999999976531 222322 36778889999999999999999 59999999998
Q ss_pred h----hhhhccccCCCCCchHHHHHH
Q psy4398 249 L----NCAFLRNHYPVEKLPKTILYA 270 (306)
Q Consensus 249 ~----~v~vGrall~~p~~~~~~l~~ 270 (306)
. ++++||++++||+++++..+.
T Consensus 319 ~g~~D~V~~gR~~iadP~~~~k~~~g 344 (361)
T cd04747 319 RGEFDLVAVGRALLSDPAWVAKVREG 344 (361)
T ss_pred CCCCCeehhhHHHHhCcHHHHHHHcC
Confidence 6 569999999999888764433
No 30
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=100.00 E-value=2e-33 Score=259.11 Aligned_cols=261 Identities=13% Similarity=0.102 Sum_probs=198.9
Q ss_pred ccccccccccCCceEEccCCCC-CCHHHHHHHHHcCCCEEEecceechhhhhh-----hhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRM-NTLPFRLLALDYGADLVYSEELVDHKLVKT-----ERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~-t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
|+++++|++|+|||++|+++.. +...++. ....|+|.++|++++.++.... .+...+++|++++.|+|....+
T Consensus 2 L~~~~~Gl~l~NPv~~AsG~~~~~~e~~~~-~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~ 80 (310)
T PRK02506 2 TSTQIAGFKFDNCLMNAAGVYCMTKEELEE-VEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYL 80 (310)
T ss_pred CceEECCEECCCCCEeCCCCCCCCHHHHHH-HHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHH
Confidence 5788999999999999999974 4445665 4489999999999998764311 1123568899999998764332
Q ss_pred eec--CCC--CCCceEEEecCCCHHHHHHHHHHHhc-C-CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 94 FRT--CPR--EKNKIILQIGTADPERALEAAKKVEH-D-VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 94 ~~~--~~~--~~~p~ivql~g~~~~~~~~aa~~~~~-g-~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
.+. ..+ .+.|+|+||.|.++++|.+.++.+++ | +|+||||++|||.. .+..+..+++.+.++++++++.
T Consensus 81 ~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~-----~~~~~g~d~~~~~~i~~~v~~~ 155 (310)
T PRK02506 81 DYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP-----GKPQIAYDFETTEQILEEVFTY 155 (310)
T ss_pred HHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-----CccccccCHHHHHHHHHHHHHh
Confidence 221 112 25799999999999999999999875 6 99999999999941 1445667899999999999999
Q ss_pred ccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEccc-------------CC------CCCCCC----CCcHHHHHHHH
Q psy4398 168 LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR-------------TK------AERPRH----RNRIEMIRTLT 224 (306)
Q Consensus 168 ~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~-------------~~------~~~~~~----p~~~~~v~~i~ 224 (306)
+.+||+||++...+..+..+.+..+.+.|+++|+...+ .. .+++++ |..++++++++
T Consensus 156 ~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~ 235 (310)
T PRK02506 156 FTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFY 235 (310)
T ss_pred cCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHH
Confidence 99999999995444444445555555667777654321 00 122233 34688999999
Q ss_pred hhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CC-CchHH--HHHHHHHhcCCCCCcceehhhccceeeEE
Q psy4398 225 QHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VE-KLPKT--ILYAHCKYKRFEVPKYETVQYEKLFRSLV 295 (306)
Q Consensus 225 ~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p-~~~~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 295 (306)
+.+ ++|||++|||.|.+|+.+.+.+| ||++++++. +| ...++ +|++||+++| |++++
T Consensus 236 ~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g--------------~~si~ 301 (310)
T PRK02506 236 QRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMAEKG--------------YQSLE 301 (310)
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHHhC--------------CCCHH
Confidence 998 69999999999999999999875 499999876 89 55555 9999999999 77887
Q ss_pred EEcCc
Q psy4398 296 TVNGK 300 (306)
Q Consensus 296 ~~~~~ 300 (306)
+++|+
T Consensus 302 e~~G~ 306 (310)
T PRK02506 302 DFRGK 306 (310)
T ss_pred HHhCh
Confidence 77774
No 31
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=100.00 E-value=2.4e-33 Score=264.52 Aligned_cols=266 Identities=12% Similarity=0.024 Sum_probs=196.4
Q ss_pred ccccccccccCCceEEccCCCC----CCHHHHH-H--HHHcCCCEEEecceechhhhhhhhh-hhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVRM----NTLPFRL-L--ALDYGADLVYSEELVDHKLVKTERK-VNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~----t~~~~r~-~--~~~~G~g~~~te~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 91 (306)
.|+++++++|||||++|||+.. ++..+.. + .+++|+|+++||.+.+.+....... ..+++ +...+.. ++
T Consensus 10 ~P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~-~d~~i~~--~~ 86 (370)
T cd02929 10 EPIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLW-DDGDIRN--LA 86 (370)
T ss_pred CCccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcC-CHHHHHH--HH
Confidence 6889999999999999999732 2222222 2 2357899999998887654322211 12222 2223322 56
Q ss_pred eeeecCCCCCCceEEEecCCC-----------------------------------------HHHHHHHHHHHhc-CCCE
Q psy4398 92 VVFRTCPREKNKIILQIGTAD-----------------------------------------PERALEAAKKVEH-DVAA 129 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~-----------------------------------------~~~~~~aa~~~~~-g~d~ 129 (306)
.+.+.+|++|.++++||++.+ .++|++||+++++ |||+
T Consensus 87 ~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~aGfDg 166 (370)
T cd02929 87 AMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARDAGFDI 166 (370)
T ss_pred HHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 677888888999999985310 2579999999975 9999
Q ss_pred EEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhccccc--EEEEecc--------CCChHHHHHHHH
Q psy4398 130 IDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP--VSCKIRV--------FHNEADTIALCK 190 (306)
Q Consensus 130 veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p--v~vKir~--------g~~~~~~~~~a~ 190 (306)
||||++| |..|.|+|+||+++++|.+++.|++++||++++.+ |.+|++. +++.+++.++++
T Consensus 167 VEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~ 246 (370)
T cd02929 167 VYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVE 246 (370)
T ss_pred EEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHH
Confidence 9999998 99999999999999999999999999999999654 5555543 134677889999
Q ss_pred HHHHcCCcEEEEcccCCCC-----C-CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCC
Q psy4398 191 RLEACGIIAIGVHGRTKAE-----R-PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPV 260 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~~~~-----~-~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~ 260 (306)
.+++. +|++.++...... . +.....+++++++++.+++|||++|+|+++++++++++. ++++||++++|
T Consensus 247 ~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad 325 (370)
T cd02929 247 MLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIAD 325 (370)
T ss_pred HHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhC
Confidence 99876 8999987643211 1 112235788899999999999999999999999999986 56999999999
Q ss_pred CCchHHHHHHHHHhcCCCCCcceehh-hcccee
Q psy4398 261 EKLPKTILYAHCKYKRFEVPKYETVQ-YEKLFR 292 (306)
Q Consensus 261 p~~~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~ 292 (306)
|+++++..+.-.+ --.+|+.|++ +.+.++
T Consensus 326 P~l~~k~~~g~~~---~i~~Ci~Cn~C~~~~~~ 355 (370)
T cd02929 326 PFLPKKIREGRID---DIRECIGCNICISGDEG 355 (370)
T ss_pred chHHHHHHcCCcc---ccccCCchhhhhccccC
Confidence 9888763222111 1257999998 666543
No 32
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=100.00 E-value=2e-33 Score=262.45 Aligned_cols=244 Identities=17% Similarity=0.165 Sum_probs=191.2
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|||||++|||+. +|+..+..+. +++|+|+++||.+.+.+.....+...++ .+..++.. +
T Consensus 3 ~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~-~~d~~~~~--~ 79 (336)
T cd02932 3 TPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGL-WNDEQIEA--L 79 (336)
T ss_pred CCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceee-cCHHHHHH--H
Confidence 578999999999999999973 2333344332 3578999999998876543222221122 22222222 5
Q ss_pred ceeeecCCCCCCceEEEecCC---------------------------------------------------CHHHHHHH
Q psy4398 91 SVVFRTCPREKNKIILQIGTA---------------------------------------------------DPERALEA 119 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~---------------------------------------------------~~~~~~~a 119 (306)
+.+.+.+|+.|.++++||++. -.++|+++
T Consensus 80 ~~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~a 159 (336)
T cd02932 80 KRIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAA 159 (336)
T ss_pred HHHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 667778888888999998431 02579999
Q ss_pred HHHHhc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc------CCC
Q psy4398 120 AKKVEH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------FHN 181 (306)
Q Consensus 120 a~~~~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------g~~ 181 (306)
|+++++ |||+||||++| |..|.++|+||+++++|++++.|+++++|+.+ ++||.+|++. |++
T Consensus 160 A~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~ 239 (336)
T cd02932 160 ARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWD 239 (336)
T ss_pred HHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCC
Confidence 998875 99999999886 88899999999999999999999999999999 6899999993 567
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCC--CCCC-C-CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhh
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTK--AERP-R-HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAF 253 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~--~~~~-~-~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~v 253 (306)
.+++.++++.+++.|+|+|+++.... ...+ . ...+++.++++++.+++||+++|+|.++++++++++. ++++
T Consensus 240 ~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 240 LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 88899999999999999999985432 2111 1 2345788899999999999999999999999999986 4599
Q ss_pred ccccCCCCCchHH
Q psy4398 254 LRNHYPVEKLPKT 266 (306)
Q Consensus 254 Grall~~p~~~~~ 266 (306)
||++++||.++.+
T Consensus 320 gR~~i~dP~~~~k 332 (336)
T cd02932 320 GRELLRNPYWPLH 332 (336)
T ss_pred hHHHHhCccHHHH
Confidence 9999999988765
No 33
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=100.00 E-value=3.2e-33 Score=260.56 Aligned_cols=240 Identities=18% Similarity=0.186 Sum_probs=188.0
Q ss_pred ccccccccccCCceEEccCCC--------CCCHHHHHHHHH-cCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR--------MNTLPFRLLALD-YGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--------~t~~~~r~~~~~-~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|++|++++|||||++|||.. +|+...+.+.++ .| |+++||.+.+.+.....+...+ +.+...+.. +
T Consensus 4 ~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~-l~~d~~i~~--l 79 (338)
T cd02933 4 SPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPG-IYTDEQVEG--W 79 (338)
T ss_pred CCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCc-cCCHHHHHH--H
Confidence 578999999999999999972 133344444333 35 9999999887654322111111 222222221 5
Q ss_pred ceeeecCCCCCCceEEEecCC----------------------------------C---------------HHHHHHHHH
Q psy4398 91 SVVFRTCPREKNKIILQIGTA----------------------------------D---------------PERALEAAK 121 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~----------------------------------~---------------~~~~~~aa~ 121 (306)
+.+.+.+|+++.++++||.+. . .++|+++|+
T Consensus 80 r~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 159 (338)
T cd02933 80 KKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAAR 159 (338)
T ss_pred HHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 667778888899999998541 0 256999999
Q ss_pred HHhc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhcccc-cEEEEeccC---------CC
Q psy4398 122 KVEH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVSCKIRVF---------HN 181 (306)
Q Consensus 122 ~~~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~g---------~~ 181 (306)
++++ |||+||||++| |..|.|+|+||+++++|.+++.|++++||++++. +|.+|++.. .+
T Consensus 160 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~ 239 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP 239 (338)
T ss_pred HHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCC
Confidence 9975 99999999998 9999999999999999999999999999999865 899999852 25
Q ss_pred hHHHHHHHHHHHHcCCcEEEEc-ccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccc
Q psy4398 182 EADTIALCKRLEACGIIAIGVH-GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRN 256 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~-~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGra 256 (306)
.++..++++.|++.|+|+|+++ ++..... ...++++++++++.+++|||++|||+ +++++++++. +|++||+
T Consensus 240 ~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~--~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~ 316 (338)
T cd02933 240 EATFSYLAKELNKRGLAYLHLVEPRVAGNP--EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRP 316 (338)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCCCcc--cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHh
Confidence 6788999999999999999995 4333222 45688999999999999999999997 9999999986 5699999
Q ss_pred cCCCCCchHH
Q psy4398 257 HYPVEKLPKT 266 (306)
Q Consensus 257 ll~~p~~~~~ 266 (306)
+++||+|+++
T Consensus 317 ~ladP~~~~k 326 (338)
T cd02933 317 FIANPDLVER 326 (338)
T ss_pred hhhCcCHHHH
Confidence 9999988876
No 34
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=100.00 E-value=6.1e-33 Score=254.17 Aligned_cols=240 Identities=18% Similarity=0.210 Sum_probs=192.5
Q ss_pred ccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhh--h---h---------hhcccccccccCC
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE--R---K---------VNDLLNTIDFVDP 87 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~--~---~---------~~~~l~~~~~~~~ 87 (306)
+++.|++|+|||++|++....+..+.......|+|+++|++++.++..... + . ..+++|++++.+.
T Consensus 1 ~~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~ 80 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNL 80 (289)
T ss_pred CeECCEECCCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCc
Confidence 357899999999999999866766666555899999999999977543211 1 1 2467788888777
Q ss_pred CCCceee---ecCCC-CCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHH
Q psy4398 88 LDGSVVF---RTCPR-EKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILT 162 (306)
Q Consensus 88 ~~~~~~~---~~~~~-~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~ 162 (306)
+...... ...+. .+.|+++||.+.++++|.++++.+++ |+|+||||++||+.+. +..++++++.+.++++
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~ 155 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLK 155 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHH
Confidence 5432211 12222 46899999999999999999999876 8999999999999543 3447889999999999
Q ss_pred HHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC----------------CCCCC----CCcHHHHHH
Q psy4398 163 TLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA----------------ERPRH----RNRIEMIRT 222 (306)
Q Consensus 163 ~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~----------------~~~~~----p~~~~~v~~ 222 (306)
++++.+++||++|++.+.+.++..++++.++++|+|+|+++++... +.+++ +..++++++
T Consensus 156 ~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~ 235 (289)
T cd02810 156 AVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVAR 235 (289)
T ss_pred HHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHH
Confidence 9999999999999998777778999999999999999999876421 11122 235889999
Q ss_pred HHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCC-CCchHH
Q psy4398 223 LTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPV-EKLPKT 266 (306)
Q Consensus 223 i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~-p~~~~~ 266 (306)
+++.+ ++|||++|||.|.+++.++++.| +++||+++.| |.+.+.
T Consensus 236 i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~ 285 (289)
T cd02810 236 LAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRK 285 (289)
T ss_pred HHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHH
Confidence 99999 89999999999999999999875 5999999998 966554
No 35
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=1.8e-32 Score=251.19 Aligned_cols=244 Identities=15% Similarity=0.067 Sum_probs=190.0
Q ss_pred ccccccccCCceEEccCC-CCCCHHHHHHHHHcCCCEEEecceechhhhhh-----hhhhhcccccccccCCCCCceeee
Q psy4398 22 ANQANINYSNKIILAPMV-RMNTLPFRLLALDYGADLVYSEELVDHKLVKT-----ERKVNDLLNTIDFVDPLDGSVVFR 95 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~-~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~ 95 (306)
+++.|++|+|||++|+++ +.+...++.+. ..|+|.++|++++.++.... .+...+++|++++.|+|....+.+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~~~~e~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~ 79 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWCTTLEDLLELA-ASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEY 79 (294)
T ss_pred CccCCeeCCCCCEECCCCCCCCHHHHHHHH-HcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHH
Confidence 357899999999999999 45555566655 58999999999998765321 122456789999999876443222
Q ss_pred c--C----CCCCCceEEEecCCCHHHHHHHHHHHhc----CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH
Q psy4398 96 T--C----PREKNKIILQIGTADPERALEAAKKVEH----DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI 165 (306)
Q Consensus 96 ~--~----~~~~~p~ivql~g~~~~~~~~aa~~~~~----g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~ 165 (306)
. . ++.+.|+++||+|. +++|.++++.+++ ++|+||||++||+.. + +..+..+++.+.+++++++
T Consensus 80 i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~----~-~~~~~~~~~~~~~i~~~v~ 153 (294)
T cd04741 80 IRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP----G-KPPPAYDFDATLEYLTAVK 153 (294)
T ss_pred HHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC----C-cccccCCHHHHHHHHHHHH
Confidence 1 1 12467999999999 9999999998864 699999999999941 1 2356679999999999999
Q ss_pred hcccccEEEEeccCCChHHHHHHHHHHHHc--CCcEEEEcccC-----------C-----C---CCCCC----CCcHHHH
Q psy4398 166 SNLSIPVSCKIRVFHNEADTIALCKRLEAC--GIIAIGVHGRT-----------K-----A---ERPRH----RNRIEMI 220 (306)
Q Consensus 166 ~~~~~pv~vKir~g~~~~~~~~~a~~l~~~--G~d~i~v~~~~-----------~-----~---~~~~~----p~~~~~v 220 (306)
+.+.+||+||++.+++.++..++|+.+.+. |+|+|+++.+. . . +.+++ |..++++
T Consensus 154 ~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v 233 (294)
T cd04741 154 AAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNV 233 (294)
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHH
Confidence 999999999999877777888999999998 99999953221 1 1 12232 2357888
Q ss_pred HHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccC-CCC-CchHH--HHHHHH
Q psy4398 221 RTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHY-PVE-KLPKT--ILYAHC 272 (306)
Q Consensus 221 ~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall-~~p-~~~~~--~l~~~~ 272 (306)
+++++.+ ++|||++|||.|.+|+.+.+.+| ||+||+++ .|| .+.++ +|++|+
T Consensus 234 ~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~~ 294 (294)
T cd04741 234 RTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKELEDIW 294 (294)
T ss_pred HHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHHHHHhhC
Confidence 9999999 49999999999999999999875 49999998 599 44444 888875
No 36
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=8.2e-33 Score=283.10 Aligned_cols=264 Identities=14% Similarity=0.153 Sum_probs=204.9
Q ss_pred ccccccccccCCceEEccCCCC-------CCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM-------NTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~-------t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|++|++++|||||+++||+.+ |+.+...+. +++|+|+++||.+.+.+.....+...++++ .+.+.. +
T Consensus 401 ~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~-d~~i~~--~ 477 (765)
T PRK08255 401 TPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYN-DEQEAA--W 477 (765)
T ss_pred CccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCC-HHHHHH--H
Confidence 7899999999999999999742 334444432 257899999999887654332222223322 223332 5
Q ss_pred ceeeecCCCC-CCceEEEecCC-------------------------------------C------------HHHHHHHH
Q psy4398 91 SVVFRTCPRE-KNKIILQIGTA-------------------------------------D------------PERALEAA 120 (306)
Q Consensus 91 ~~~~~~~~~~-~~p~ivql~g~-------------------------------------~------------~~~~~~aa 120 (306)
+.+.+.+|++ +.++++||++. . .++|+++|
T Consensus 478 ~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA 557 (765)
T PRK08255 478 KRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAA 557 (765)
T ss_pred HHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 6677888877 58899998430 0 25799999
Q ss_pred HHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc------CCCh
Q psy4398 121 KKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------FHNE 182 (306)
Q Consensus 121 ~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------g~~~ 182 (306)
+++++ |||+||||++ ||..|.++|+||+++++|.+++.||+++||+.+ ++||.+|++. |++.
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~ 637 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP 637 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH
Confidence 98875 9999999999 999999999999999999999999999999998 4799999996 4567
Q ss_pred HHHHHHHHHHHHcCCcEEEEccc-CCCCC---CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhc
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGR-TKAER---PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFL 254 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~-~~~~~---~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vG 254 (306)
+++.++++.|+++|+|+|+||.. ..... +......++.+++++.+++|||++|+|+++++++++++. ++++|
T Consensus 638 ~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~g 717 (765)
T PRK08255 638 DDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALA 717 (765)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEc
Confidence 88999999999999999999853 32111 111234677899999999999999999999999999986 56999
Q ss_pred cccCCCCCchHHHHHHHHHh-cCCCCCcceehh
Q psy4398 255 RNHYPVEKLPKTILYAHCKY-KRFEVPKYETVQ 286 (306)
Q Consensus 255 rall~~p~~~~~~l~~~~~~-~g~~~~~~~~~~ 286 (306)
|++++||.|+.....++-.+ ..++.-|..||+
T Consensus 718 R~~l~dP~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (765)
T PRK08255 718 RPHLADPAWTLHEAAEIGYRDVAWPKQYLAGKR 750 (765)
T ss_pred HHHHhCccHHHHHHHHcCCCCCCCchhhhhhhc
Confidence 99999998887766665443 445566777877
No 37
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=100.00 E-value=7.5e-34 Score=265.67 Aligned_cols=247 Identities=18% Similarity=0.196 Sum_probs=180.3
Q ss_pred ccccccccccCCceEEccCCCC--------CC-HHHHHH--HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------NT-LPFRLL--ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t~-~~~r~~--~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (306)
.|++|++++|||||++|||+.. ++ .....+ .+++|+|+++||.+.+.+.........++ .+..++..
T Consensus 4 ~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i-~~d~~i~~- 81 (341)
T PF00724_consen 4 SPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGI-WDDEQIPG- 81 (341)
T ss_dssp S-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBS-SSHHHHHH-
T ss_pred CCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchh-chhhHHHH-
Confidence 5779999999999999999832 22 222222 23789999999999887654432222222 23333332
Q ss_pred CCceeeecCCCCCCceEEEecCCC-------------------------------------------HHHHHHHHHHHhc
Q psy4398 89 DGSVVFRTCPREKNKIILQIGTAD-------------------------------------------PERALEAAKKVEH 125 (306)
Q Consensus 89 ~~~~~~~~~~~~~~p~ivql~g~~-------------------------------------------~~~~~~aa~~~~~ 125 (306)
++.+.+.+|++|.++++||++.+ .++|++||+++++
T Consensus 82 -~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~ 160 (341)
T PF00724_consen 82 -LKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKE 160 (341)
T ss_dssp -HHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 66788888889999999996421 2579999999975
Q ss_pred -CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc------CCChHHHHH
Q psy4398 126 -DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------FHNEADTIA 187 (306)
Q Consensus 126 -g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------g~~~~~~~~ 187 (306)
|||+||||.+ +|..|.|+|+||++++||.+++.||+++||+.+ +.||.+|++. |.+.++..+
T Consensus 161 AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~ 240 (341)
T PF00724_consen 161 AGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIE 240 (341)
T ss_dssp TT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHH
T ss_pred hccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHH
Confidence 9999999976 799999999999999999999999999999998 5788999997 223467888
Q ss_pred HHHHHHHcCCcEEEEcccC------C--CC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhh
Q psy4398 188 LCKRLEACGIIAIGVHGRT------K--AE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAF 253 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~------~--~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~v 253 (306)
+++.+++.|+|.+.++... . .. .......++.+..+++.+++|||++|||++++.++++++. ++.+
T Consensus 241 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 241 IAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAM 320 (341)
T ss_dssp HHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeec
Confidence 9999999999988754211 0 11 1111235678899999999999999999999999999986 4699
Q ss_pred ccccCCCCCchHHHHH
Q psy4398 254 LRNHYPVEKLPKTILY 269 (306)
Q Consensus 254 Grall~~p~~~~~~l~ 269 (306)
||++++||.|+++..+
T Consensus 321 gR~~ladPd~~~k~~~ 336 (341)
T PF00724_consen 321 GRPLLADPDLPNKARE 336 (341)
T ss_dssp SHHHHH-TTHHHHHHH
T ss_pred cHHHHhCchHHHHHHc
Confidence 9999999999987433
No 38
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=100.00 E-value=3.7e-32 Score=252.80 Aligned_cols=240 Identities=17% Similarity=0.152 Sum_probs=191.1
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh--hh-----hhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT--ER-----KVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~--~~-----~~~~~l~~~~~~~~~~~~~ 92 (306)
+++++.|++|+|||++|++...+...++.+. +.|+|++++++++.++.... .+ ...+++|++++.|+|....
T Consensus 39 L~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~ 117 (327)
T cd04738 39 LEVEVFGLTFPNPVGLAAGFDKNAEAIDALL-ALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAV 117 (327)
T ss_pred cceEECCEECCCCCEeCcCCCCCHHHHHHHH-HCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHH
Confidence 9999999999999999999875555566655 89999999999987643311 11 1247889999988875433
Q ss_pred eeecC--CCCCCceEEEecCCC-------HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 93 VFRTC--PREKNKIILQIGTAD-------PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 93 ~~~~~--~~~~~p~ivql~g~~-------~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
+.+.. ...+.|+++||++++ .++|+++++.+..++|+||||++||+.. |....++++.+.+++++
T Consensus 118 ~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~a 191 (327)
T cd04738 118 AKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP------GLRDLQGKEALRELLTA 191 (327)
T ss_pred HHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------ccccccCHHHHHHHHHH
Confidence 22211 114689999999886 6888888888877899999999999942 33447899999999999
Q ss_pred HHhccc-----ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------CCCCCC----CcHHHHH
Q psy4398 164 LISNLS-----IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------ERPRHR----NRIEMIR 221 (306)
Q Consensus 164 v~~~~~-----~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~~~~~p----~~~~~v~ 221 (306)
+++.+. +||+||++.+++.++..++++.++++|+|+|++++++.. +.++++ ..+++++
T Consensus 192 v~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~ 271 (327)
T cd04738 192 VKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLR 271 (327)
T ss_pred HHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHH
Confidence 999886 999999997666668999999999999999999886531 234443 3489999
Q ss_pred HHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCchHH
Q psy4398 222 TLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLPKT 266 (306)
Q Consensus 222 ~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~~~ 266 (306)
++++.+ ++|||++|||.|.+|+.+++..| ||+||+++. ||.+.+.
T Consensus 272 ~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~ 322 (327)
T cd04738 272 ELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKR 322 (327)
T ss_pred HHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHH
Confidence 999999 79999999999999999999864 599999866 6955543
No 39
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=100.00 E-value=4.3e-32 Score=255.00 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=187.9
Q ss_pred ccccccccccCCceEEccCCCC---------CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM---------NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~---------t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|||||++|||... |+...+.+.+++|+|+++||.+.+.+.....+...+++ +...+.. +
T Consensus 5 ~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg~GLIi~e~~~v~~~~~~~~~~~~l~-~d~~i~~--~ 81 (362)
T PRK10605 5 SPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEATQISAQAKGYAGAPGLH-SPEQIAA--W 81 (362)
T ss_pred CCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHhCCCEEEECceeeCcccccCCCCCccc-CHHHHHH--H
Confidence 6789999999999999999731 23345555666799999999988765432222211222 2222222 5
Q ss_pred ceeeecCCCCCCceEEEecCCC------------------------------------------------------HHHH
Q psy4398 91 SVVFRTCPREKNKIILQIGTAD------------------------------------------------------PERA 116 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~~------------------------------------------------------~~~~ 116 (306)
+.+.+.+|++|.++++||++.+ .++|
T Consensus 82 ~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f 161 (362)
T PRK10605 82 KKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDF 161 (362)
T ss_pred HHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHH
Confidence 6677888888999999985410 1569
Q ss_pred HHHHHHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEecc-------
Q psy4398 117 LEAAKKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRV------- 178 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~------- 178 (306)
++||+++++ |||+||||++ +|..|.|+|+||++++||.+++.||+++||++++ ..|.+|++.
T Consensus 162 ~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~ 241 (362)
T PRK10605 162 RQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNV 241 (362)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccC
Confidence 999999975 9999999976 7999999999999999999999999999999984 258888864
Q ss_pred --CCChHH-HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hh
Q psy4398 179 --FHNEAD-TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NC 251 (306)
Q Consensus 179 --g~~~~~-~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v 251 (306)
|.+.++ ..++++.|++.|+|+|+++....... .+....+.++|++.+++||+++|++ |++.++++++. +|
T Consensus 242 ~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~--~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V 318 (362)
T PRK10605 242 DNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG--EPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAV 318 (362)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC--ccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEE
Confidence 345567 79999999999999999986422111 1334567799999999999999996 89999999986 45
Q ss_pred hhccccCCCCCchHHH
Q psy4398 252 AFLRNHYPVEKLPKTI 267 (306)
Q Consensus 252 ~vGrall~~p~~~~~~ 267 (306)
.+||++++||.|+++.
T Consensus 319 ~~gR~~iadPd~~~k~ 334 (362)
T PRK10605 319 AFGRDYIANPDLVARL 334 (362)
T ss_pred EECHHhhhCccHHHHH
Confidence 9999999999888764
No 40
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.97 E-value=3.5e-31 Score=232.66 Aligned_cols=212 Identities=17% Similarity=0.195 Sum_probs=170.0
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEecceechhhh--------hhhhhhhccccc---ccccCCCCCceeeecCCCCCCceEE
Q psy4398 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLV--------KTERKVNDLLNT---IDFVDPLDGSVVFRTCPREKNKIIL 106 (306)
Q Consensus 38 m~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~--------~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~p~iv 106 (306)
|.|.||..|..-... .+|+++-...+.+... ...|. .-+++. ..|++ + ....++ ...|+++
T Consensus 1 mag~~d~~~~~~~~~-~~~~~~lgg~~~d~~t~~a~~~~~~rgr~-ef~~~~e~~~~~i~----~-e~~~~~-~~~~viv 72 (231)
T TIGR00736 1 MAGITDAEFCRKFKD-LFAIVTLGGYNADRATYKASRDIEKRGRK-EFSFNLEEFNSYII----E-QIKKAE-SRALVSV 72 (231)
T ss_pred CCCcchHHHHHhcCc-CcCEEEECCccCCHHHHHHHHHHHHcCCc-ccCcCcccHHHHHH----H-HHHHHh-hcCCEEE
Confidence 788999998775422 4889988888755432 11111 112221 11111 1 112222 4569999
Q ss_pred EecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 107 QIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 107 ql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
|+.+.+++++.++++.+++++|+||||+|||++++.+.++|++++++|+.+.++++++++ .++||+||+|++++..+..
T Consensus 73 nv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~ 151 (231)
T TIGR00736 73 NVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDEL 151 (231)
T ss_pred EEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHH
Confidence 999999999999999999899999999999999999999999999999999999999994 5899999999887667789
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
++++.++++|+|+|+||.+.... ++++|++++++++.++ +|||+||||.|.+|+.++++.| ||+||+++.+-
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g~---~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~~ 227 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPGK---PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKGN 227 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCCC---chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccCC
Confidence 99999999999999998654322 2268999999999995 9999999999999999999874 59999999764
No 41
>PLN02826 dihydroorotate dehydrogenase
Probab=99.97 E-value=3.7e-31 Score=250.61 Aligned_cols=250 Identities=16% Similarity=0.117 Sum_probs=197.2
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhh-------hhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK-------TERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
+++++.|++|+|||.+|++.+.+...++.+. ..|+|++.++++++.+... ......+++|+++|.|+|....
T Consensus 74 L~~~~~Gl~f~NPvglAAG~dkn~~~~~~l~-~lGfG~vevgTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~ 152 (409)
T PLN02826 74 LGVEVWGRTFSNPIGLAAGFDKNAEAVEGLL-GLGFGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAV 152 (409)
T ss_pred cceEECCEECCCCCEECcccCCCHHHHHHHH-hcCCCeEEeCCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHH
Confidence 8999999999999999999998877777766 5699999999999765431 1122367899999999975432
Q ss_pred eeec---CCC----------------------CCCceEEEecCC-----CHHHHHHHHHHHhcCCCEEEEccCCCccccc
Q psy4398 93 VFRT---CPR----------------------EKNKIILQIGTA-----DPERALEAAKKVEHDVAAIDINMGCPKQFSL 142 (306)
Q Consensus 93 ~~~~---~~~----------------------~~~p~ivql~g~-----~~~~~~~aa~~~~~g~d~veln~gcP~~~~~ 142 (306)
..+. .++ ...|+++||+++ ..++|.+.++.+...+|+||||++|||+.
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp-- 230 (409)
T PLN02826 153 AKRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP-- 230 (409)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccCceEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC--
Confidence 1111 000 123899999777 57899999998888899999999999951
Q ss_pred cCCccccccCChHHHHHHHHHHHhc---------ccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC------
Q psy4398 143 TGGMGAALLSTPDIACNILTTLISN---------LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK------ 207 (306)
Q Consensus 143 ~~~~G~~l~~~~~~~~eiv~~v~~~---------~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~------ 207 (306)
|...+++++.+.++++++++. ..+||+||++...+.++..++|+.+.++|+|+|+++..+.
T Consensus 231 ----glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl 306 (409)
T PLN02826 231 ----GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSV 306 (409)
T ss_pred ----CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccch
Confidence 335567888999999988643 3689999999555556899999999999999999876431
Q ss_pred --------CCCCCCC----CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC-CC-CchHH--
Q psy4398 208 --------AERPRHR----NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP-VE-KLPKT-- 266 (306)
Q Consensus 208 --------~~~~~~p----~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~-~p-~~~~~-- 266 (306)
.++++++ ..+++++++++.+ ++|||++|||.|.+|+.+.+.+|+ |++|+++. +| ...++
T Consensus 307 ~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~ 386 (409)
T PLN02826 307 LGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKA 386 (409)
T ss_pred hcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHH
Confidence 1234443 3688999999998 799999999999999999998865 99999854 79 44444
Q ss_pred HHHHHHHhcC
Q psy4398 267 ILYAHCKYKR 276 (306)
Q Consensus 267 ~l~~~~~~~g 276 (306)
+|.+||+++|
T Consensus 387 eL~~~l~~~G 396 (409)
T PLN02826 387 ELAACLERDG 396 (409)
T ss_pred HHHHHHHHcC
Confidence 9999999999
No 42
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.97 E-value=5.7e-30 Score=238.19 Aligned_cols=243 Identities=19% Similarity=0.186 Sum_probs=191.3
Q ss_pred cccccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh--hh-----hhhcccccccccCCCC
Q psy4398 17 LDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT--ER-----KVNDLLNTIDFVDPLD 89 (306)
Q Consensus 17 ~~~~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~--~~-----~~~~~l~~~~~~~~~~ 89 (306)
.+.++++++|++|+|||++|++.+.+....+.+. ..|+|.+++++++.++.... .+ ...+++|++++.|+|.
T Consensus 43 ~~~L~~~~~Gl~l~NPi~lAsG~~~~~~~~~~~~-~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~ 121 (335)
T TIGR01036 43 SDPLEVTVLGLKFPNPLGLAAGFDKDGEAIDALG-AMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGA 121 (335)
T ss_pred CCCCcEEECCEECCCCcEeCCccCCCHHHHHHHH-hcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhH
Confidence 4448999999999999999999876666666655 67999999999997653311 11 2257889999999876
Q ss_pred CceeeecC-CCCCCceEEEecCC-------CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHH
Q psy4398 90 GSVVFRTC-PREKNKIILQIGTA-------DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161 (306)
Q Consensus 90 ~~~~~~~~-~~~~~p~ivql~g~-------~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv 161 (306)
...+.+.. .+.+.|++++++++ ..++|++.++.+.+.+|+||||++|||.. |....++++.+.+++
T Consensus 122 ~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~------~~~~~~~~~~~~~i~ 195 (335)
T TIGR01036 122 DVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP------GLRDLQYKAELRDLL 195 (335)
T ss_pred HHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC------CcccccCHHHHHHHH
Confidence 54333222 23467999999766 47899999998877899999999999951 345568899999999
Q ss_pred HHHHhccc-------ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC-------------CCCCCCC----CcH
Q psy4398 162 TTLISNLS-------IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK-------------AERPRHR----NRI 217 (306)
Q Consensus 162 ~~v~~~~~-------~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~-------------~~~~~~p----~~~ 217 (306)
+++++.+. +||+||++...+.++..++++.++++|+|+|++..... .+.++++ ..+
T Consensus 196 ~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al 275 (335)
T TIGR01036 196 TAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKST 275 (335)
T ss_pred HHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHH
Confidence 99998876 99999999555555899999999999999999865432 1233443 367
Q ss_pred HHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCchHH
Q psy4398 218 EMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLPKT 266 (306)
Q Consensus 218 ~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~~~ 266 (306)
++++++++.+ ++|||++|||.+.+|+.+.+.+| ||+||+++. +|.+.+.
T Consensus 276 ~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~ 330 (335)
T TIGR01036 276 EIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKE 330 (335)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHH
Confidence 8999999988 69999999999999999999875 499999866 7966554
No 43
>PLN02411 12-oxophytodienoate reductase
Probab=99.97 E-value=3.5e-30 Score=244.21 Aligned_cols=243 Identities=15% Similarity=0.114 Sum_probs=178.8
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHHH--HcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLAL--DYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~~--~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|||||++|||+. +|+.....+.+ ++| |+++||.+.+.+.........+++ +..++.. +
T Consensus 14 ~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g~~~~~~~gi~-~d~~i~~--~ 89 (391)
T PLN02411 14 SPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTAPGFPHVPGIY-SDEQVEA--W 89 (391)
T ss_pred CCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcccCcCCCCCccC-CHHHHHH--H
Confidence 677999999999999999973 23344333332 356 999999988765432222212222 2222222 5
Q ss_pred ceeeecCCCCCCceEEEecCC----------------------------------------C------------HHHHHH
Q psy4398 91 SVVFRTCPREKNKIILQIGTA----------------------------------------D------------PERALE 118 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~----------------------------------------~------------~~~~~~ 118 (306)
+.+.+.+|++|.++++||++. . .++|++
T Consensus 90 ~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~ 169 (391)
T PLN02411 90 KKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQ 169 (391)
T ss_pred HHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHH
Confidence 667778888888888898420 0 256999
Q ss_pred HHHHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC--------
Q psy4398 119 AAKKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF-------- 179 (306)
Q Consensus 119 aa~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g-------- 179 (306)
||+++++ |||+||||.+ +|..|.|+|+||++++||.+++.||+++||++++ ..|.+|++..
T Consensus 170 AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~ 249 (391)
T PLN02411 170 AALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATD 249 (391)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCC
Confidence 9999974 9999999976 7999999999999999999999999999999995 2488888841
Q ss_pred -CChHHHHHHHHHHHHc------CCcEEEEcccCCCCC------CCCCC--cHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q psy4398 180 -HNEADTIALCKRLEAC------GIIAIGVHGRTKAER------PRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVDYG 244 (306)
Q Consensus 180 -~~~~~~~~~a~~l~~~------G~d~i~v~~~~~~~~------~~~p~--~~~~v~~i~~~~~ipvia~GGI~s~~~~~ 244 (306)
...++..++++.+++. |+|+|+++....... ...+. ...+.+++++.+++|||++|+| +.+.++
T Consensus 250 ~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~~~a~ 328 (391)
T PLN02411 250 SDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TRELGM 328 (391)
T ss_pred CcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CHHHHH
Confidence 1134567788888763 599999986532110 01111 2356789999999999999999 579999
Q ss_pred HHHHh----hhhhccccCCCCCchHHH
Q psy4398 245 GVFSL----NCAFLRNHYPVEKLPKTI 267 (306)
Q Consensus 245 ~~l~~----~v~vGrall~~p~~~~~~ 267 (306)
++++. +|.+||++++||+|+++.
T Consensus 329 ~~l~~g~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 329 QAVQQGDADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred HHHHcCCCCEEEECHHHHhCccHHHHH
Confidence 99986 459999999999998763
No 44
>KOG2334|consensus
Probab=99.97 E-value=2.5e-29 Score=230.49 Aligned_cols=243 Identities=51% Similarity=0.821 Sum_probs=222.4
Q ss_pred cccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCC
Q psy4398 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKN 102 (306)
Q Consensus 23 ~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 102 (306)
++..+.+.|.+++|||...+..++|.++-++|+++++||-+....+....+..+..+++++|.+|......++.++.+..
T Consensus 3 ~~~~l~y~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~ 82 (477)
T KOG2334|consen 3 KISSLFYRNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENS 82 (477)
T ss_pred chhhhhhcCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcC
Confidence 45667889999999999999999999999999999999999888888888877888999999999777788999988888
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
.++.|++.++++-..++|+.+.....++++|+|||..+-...+.|+.++.+++.+..|+..+.+...+|+++|+|.-++.
T Consensus 83 rlilQ~gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~ 162 (477)
T KOG2334|consen 83 RLILQIGTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSK 162 (477)
T ss_pred eEEEEecCCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCc
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHh-------hhhhc
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSL-------NCAFL 254 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~-------~v~vG 254 (306)
+++.++.+.+.+.|+.+|.+|+|+.+++...|..-++++.+.+.+. +|||+|||+.+++.+.++... ++++.
T Consensus 163 edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiA 242 (477)
T KOG2334|consen 163 EDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIA 242 (477)
T ss_pred ccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhh
Confidence 9999999999999999999999999999999999999999999996 999999999997777666543 67999
Q ss_pred cccCCCC-CchH
Q psy4398 255 RNHYPVE-KLPK 265 (306)
Q Consensus 255 rall~~p-~~~~ 265 (306)
|+..+|| .+.+
T Consensus 243 R~A~~n~SiF~~ 254 (477)
T KOG2334|consen 243 RAAESNPSIFRE 254 (477)
T ss_pred HhhhcCCceeee
Confidence 9999999 5543
No 45
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.97 E-value=1.2e-30 Score=239.73 Aligned_cols=248 Identities=20% Similarity=0.217 Sum_probs=178.9
Q ss_pred cccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh--h---hhhh--cccccccccCCCCCc
Q psy4398 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT--E---RKVN--DLLNTIDFVDPLDGS 91 (306)
Q Consensus 19 ~~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~--~---~~~~--~~l~~~~~~~~~~~~ 91 (306)
+|+++++|++|+|||++|++...+...++.+. +.|+|+++|++++.++.... . +... .++|++++.|+|...
T Consensus 1 ~L~~~~~Gl~l~nPi~~asG~~~~~~~~~~~~-~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~ 79 (295)
T PF01180_consen 1 MLSTNFCGLTLKNPIGLASGLDKNGEEIKRLF-DAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEY 79 (295)
T ss_dssp GG-EEETTEEESSSEEE-TTSSTSSHHHHHHH-HHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHH
T ss_pred CccEEECCEEcCCCcEECCcCCCCchhhhhhh-cCCccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHH
Confidence 47899999999999999999876666666655 67899999999997765311 1 1223 378888888876533
Q ss_pred eeee---cC---C-CCCCceEEEecCCC---HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHH
Q psy4398 92 VVFR---TC---P-REKNKIILQIGTAD---PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161 (306)
Q Consensus 92 ~~~~---~~---~-~~~~p~ivql~g~~---~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv 161 (306)
...+ .. . ....|+++++.+.+ .++|.+.++.+++|+|++|||++||+.. .+..+.++++...+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~ 154 (295)
T PF01180_consen 80 YLERLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIV 154 (295)
T ss_dssp HHHHHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHH
Confidence 2111 11 1 13579999999999 9999999999989999999999999953 3445677889999999
Q ss_pred HHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC-----------------CCCCCC----CCcHHHH
Q psy4398 162 TTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK-----------------AERPRH----RNRIEMI 220 (306)
Q Consensus 162 ~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~-----------------~~~~~~----p~~~~~v 220 (306)
+.+++..++||+||++...+.......+..+.+.|+++|++..+.. .+.+++ |..++++
T Consensus 155 ~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V 234 (295)
T PF01180_consen 155 RAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWV 234 (295)
T ss_dssp HHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHH
T ss_pred HHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHH
Confidence 9999988999999999533434456677777789999999543210 011233 3468999
Q ss_pred HHHHhhCC--CcEEEecCCCCHHHHHHHHHhhh---hhcccc-CCCC-CchHH--HHHHHH
Q psy4398 221 RTLTQHLK--IPVIANGGSKEIVDYGGVFSLNC---AFLRNH-YPVE-KLPKT--ILYAHC 272 (306)
Q Consensus 221 ~~i~~~~~--ipvia~GGI~s~~~~~~~l~~~v---~vGral-l~~p-~~~~~--~l~~~~ 272 (306)
+++++.++ +|||++|||.|.+|+.+.+.+|+ |+++++ +.|| ...++ +|++||
T Consensus 235 ~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~~~l 295 (295)
T PF01180_consen 235 RELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINRELEEWL 295 (295)
T ss_dssp HHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHHHHHH
T ss_pred HHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHHHhhC
Confidence 99999997 99999999999999999998865 999999 6799 44554 999997
No 46
>KOG2333|consensus
Probab=99.96 E-value=5e-29 Score=231.41 Aligned_cols=231 Identities=26% Similarity=0.398 Sum_probs=196.4
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPR 99 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 99 (306)
-|....-+.++.+++|||++.+.+.+||++|.++||+..+.||....++..+....+.+ .+.+..
T Consensus 254 ~p~eKk~lD~r~K~~LaPLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWAL---------------lkRH~s 318 (614)
T KOG2333|consen 254 RPQEKKLLDFRDKKYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWAL---------------LKRHQS 318 (614)
T ss_pred ChhcccccccccceeeccccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhh---------------hhhcCc
Confidence 56667778899999999999999999999999999999999998777766543332222 223333
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEe
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKI 176 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKi 176 (306)
++ .++|||.|+.++...++|+.+.+ ..|.|+||+|||-.-+.+.+.|++|+++|..+.+++++.....+ +|++||+
T Consensus 319 Ed-iFGVQlag~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKi 397 (614)
T KOG2333|consen 319 ED-IFGVQLAGSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKI 397 (614)
T ss_pred cc-ceeeEeccCChHHHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEE
Confidence 34 79999999999999999997764 68999999999998888899999999999999999999988774 6999999
Q ss_pred ccCCCh--HHHHHHHHHHH-HcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-C-CcEEEecCCCCHHHHHHHHHh--
Q psy4398 177 RVFHNE--ADTIALCKRLE-ACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-K-IPVIANGGSKEIVDYGGVFSL-- 249 (306)
Q Consensus 177 r~g~~~--~~~~~~a~~l~-~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~-ipvia~GGI~s~~~~~~~l~~-- 249 (306)
|.|... .-+.+++..+. +.|++++++|||+++++|...++|+++.++.+.. . +|+|+||+|.|-+|+.+-+..
T Consensus 398 RTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p 477 (614)
T KOG2333|consen 398 RTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNP 477 (614)
T ss_pred ecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCC
Confidence 987533 23677777777 8999999999999999999999999999999988 4 899999999999999888875
Q ss_pred ---hhhhccccCCCC-CchHH
Q psy4398 250 ---NCAFLRNHYPVE-KLPKT 266 (306)
Q Consensus 250 ---~v~vGrall~~p-~~~~~ 266 (306)
++||||+.|--| .+.++
T Consensus 478 ~v~svMIaRGALIKPWIFtEI 498 (614)
T KOG2333|consen 478 NVDSVMIARGALIKPWIFTEI 498 (614)
T ss_pred CcceEEeeccccccchHhhhh
Confidence 469999988888 55655
No 47
>KOG1436|consensus
Probab=99.92 E-value=1.4e-24 Score=192.87 Aligned_cols=273 Identities=20% Similarity=0.159 Sum_probs=201.9
Q ss_pred cccccceeeeccc--ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhh-------hhhhhhc
Q psy4398 7 RLLLVKIFYVLDM--ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK-------TERKVND 77 (306)
Q Consensus 7 ~~~~~~~~~~~~~--~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~-------~~~~~~~ 77 (306)
.|-+++.+++.|. +-+++-|-+|+|||.+|++.+.+..+...++ ..|+|++.++.+++.+... .-....+
T Consensus 69 s~gl~Pr~~~~d~~~L~~k~~g~~f~NPiglAAGfdk~~eaidgL~-~~gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~ 147 (398)
T KOG1436|consen 69 SWGLLPRDRVADDASLETKVLGRKFSNPIGLAAGFDKNAEAIDGLA-NSGFGFIEIGSVTPKPQEGNPKPRVFRLPEDLA 147 (398)
T ss_pred HhCCCchhccCCccchhhHHhhhhccCchhhhhccCcchHHHHHHH-hCCCceEEecccccCCCCCCCCCceEecccccc
Confidence 3556677777554 8888999999999999999998888888888 6999999999998765431 1223356
Q ss_pred ccccccccCCCCCceee-------ecCCCCCCceEEEecCC--CHHHHHHHHHHHh---cCCCEEEEccCCCccccccCC
Q psy4398 78 LLNTIDFVDPLDGSVVF-------RTCPREKNKIILQIGTA--DPERALEAAKKVE---HDVAAIDINMGCPKQFSLTGG 145 (306)
Q Consensus 78 ~l~~~~~~~~~~~~~~~-------~~~~~~~~p~ivql~g~--~~~~~~~aa~~~~---~g~d~veln~gcP~~~~~~~~ 145 (306)
.+|.++|.+.|+...+. ...++...++.|+++-+ +.+...+..+-++ +.+|.++||.+|||+
T Consensus 148 vINryGfns~Gi~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNt------ 221 (398)
T KOG1436|consen 148 VINRYGFNSEGIDAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNT------ 221 (398)
T ss_pred hhhccCCCcccHHHHHHHHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCC------
Confidence 78889998876532111 12234556788998643 4455555555443 468999999999995
Q ss_pred ccccccCChHHHHHHHHHHHhc---c----cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC-----------
Q psy4398 146 MGAALLSTPDIACNILTTLISN---L----SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK----------- 207 (306)
Q Consensus 146 ~G~~l~~~~~~~~eiv~~v~~~---~----~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~----------- 207 (306)
-|-.-++.-..+.+.+..+..+ . ..|+.+|+......++..+++..+.+.++|.+++++.+.
T Consensus 222 pGlr~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~ 301 (398)
T KOG1436|consen 222 PGLRSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKL 301 (398)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCcccccccc
Confidence 2333333333333333333222 1 359999999666667899999999999999999876431
Q ss_pred -------CCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhcccc-CCCC-CchHH--HHHHH
Q psy4398 208 -------AERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNH-YPVE-KLPKT--ILYAH 271 (306)
Q Consensus 208 -------~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGral-l~~p-~~~~~--~l~~~ 271 (306)
.+.+..|..++.++++++.+ .||||++|||.|.+|+.+-+.+| +|+++++ |.+| .++++ +|.+.
T Consensus 302 ~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~~kIk~El~~l 381 (398)
T KOG1436|consen 302 KEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAIIEKIKRELSAL 381 (398)
T ss_pred ccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence 12233455788999999998 69999999999999999998875 5999998 7899 77776 99999
Q ss_pred HHhcCCCCCcceehhhccceeeEEEEcCc
Q psy4398 272 CKYKRFEVPKYETVQYEKLFRSLVTVNGK 300 (306)
Q Consensus 272 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (306)
|+++| |++.++++|+
T Consensus 382 l~~kG--------------~t~v~d~iG~ 396 (398)
T KOG1436|consen 382 LKAKG--------------FTSVDDAIGK 396 (398)
T ss_pred HHhcC--------------CCcHHHhccC
Confidence 99999 9999999987
No 48
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.88 E-value=1.4e-21 Score=179.83 Aligned_cols=213 Identities=15% Similarity=0.052 Sum_probs=163.3
Q ss_pred ccccccccccCCceEEccCCCCC------CHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRMN------TLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t------~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++.|.+++.|+++|||.+.+ +..++..+++.|...+++.+.... ... +
T Consensus 54 ~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~-----~~~------------------i 110 (299)
T cd02809 54 TSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTS-----LEE------------------V 110 (299)
T ss_pred CceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCC-----HHH------------------H
Confidence 78899999999999999997654 345777788899888888755211 000 0
Q ss_pred eecCCCCCCceEEEecCC-CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 94 FRTCPREKNKIILQIGTA-DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~-~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+. .+.|+.+||.+. +++...++++++.+ |+++|++|++||+...+ ...++++++++.++.|
T Consensus 111 ~~~---~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-------------~~~~~i~~l~~~~~~p 174 (299)
T cd02809 111 AAA---APGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-------------LTWDDLAWLRSQWKGP 174 (299)
T ss_pred HHh---cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-------------CCHHHHHHHHHhcCCC
Confidence 000 125899999876 88888888888775 99999999999984222 2346788889888999
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~ 249 (306)
|++|.. . ..+.++.++++|+|+|++++....+.+.++..++.+.++++.+ ++|||++|||++..|+.+++..
T Consensus 175 vivK~v--~----s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~l 248 (299)
T cd02809 175 LILKGI--L----TPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALAL 248 (299)
T ss_pred EEEeec--C----CHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHc
Confidence 999965 2 2466889999999999997755444455677899999999988 4999999999999999999987
Q ss_pred h---hhhccccCCCCC---------ch-H--HHHHHHHHhcCC
Q psy4398 250 N---CAFLRNHYPVEK---------LP-K--TILYAHCKYKRF 277 (306)
Q Consensus 250 ~---v~vGrall~~p~---------~~-~--~~l~~~~~~~g~ 277 (306)
| |++||+++.... +. . .+|+.+|...|+
T Consensus 249 GAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~ 291 (299)
T cd02809 249 GADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGC 291 (299)
T ss_pred CCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5 499999875421 11 1 288899999994
No 49
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.85 E-value=2.5e-20 Score=173.69 Aligned_cols=250 Identities=17% Similarity=0.179 Sum_probs=165.0
Q ss_pred eeeccc-ccccccccccCCceEEccCCCCCCHH------HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccC
Q psy4398 14 FYVLDM-ANANQANINYSNKIILAPMVRMNTLP------FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86 (306)
Q Consensus 14 ~~~~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~------~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (306)
+...+. +++++.|.+|++||+.|||++.+... +...+++.|..+.+...-. .... +. ...+
T Consensus 36 ~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~---~~~~-~~---~~~~----- 103 (333)
T TIGR02151 36 INLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRA---ALKD-PE---TADT----- 103 (333)
T ss_pred CCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchh---hccC-hh---hHhH-----
Confidence 334444 88999999999999999999988433 4445677887666654211 0000 00 0000
Q ss_pred CCCCceeeecCCCCCCceEEEecCCCHHH--HHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 87 PLDGSVVFRTCPREKNKIILQIGTADPER--ALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 87 ~~~~~~~~~~~~~~~~p~ivql~g~~~~~--~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
. ...+.. ..+.|++++++...... +.++.+.++. ++|+++||+.|++......++ .+.+.+.+.++.
T Consensus 104 ---~-~~vr~~-~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~-----~~f~~~le~i~~ 173 (333)
T TIGR02151 104 ---F-EVVREE-APNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGD-----RNFKGWLEKIAE 173 (333)
T ss_pred ---H-HHHHHh-CCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCC-----cCHHHHHHHHHH
Confidence 0 000111 13579999997533211 3333333332 689999999998865444433 234557789999
Q ss_pred HHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC-------CC------CCCCc-----HHHHHHHHh
Q psy4398 164 LISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE-------RP------RHRNR-----IEMIRTLTQ 225 (306)
Q Consensus 164 v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~-------~~------~~p~~-----~~~v~~i~~ 225 (306)
+++.+++||.||.... ....+.|+.++++|+|+|+++++.... +. ....+ .+.+.++++
T Consensus 174 i~~~~~vPVivK~~g~---g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~ 250 (333)
T TIGR02151 174 ICSQLSVPVIVKEVGF---GISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS 250 (333)
T ss_pred HHHhcCCCEEEEecCC---CCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh
Confidence 9999999999998732 236799999999999999999864211 00 00012 245566666
Q ss_pred -hCCCcEEEecCCCCHHHHHHHHHhh---hhhccccC-----CCCCch-H----H--HHHHHHHhcCCCCCcceehhhcc
Q psy4398 226 -HLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHY-----PVEKLP-K----T--ILYAHCKYKRFEVPKYETVQYEK 289 (306)
Q Consensus 226 -~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall-----~~p~~~-~----~--~l~~~~~~~g~~~~~~~~~~~~~ 289 (306)
.+++|||++|||++..++.+++..| +++||+++ .+|... + + +|+.||...|
T Consensus 251 ~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G------------- 317 (333)
T TIGR02151 251 DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTG------------- 317 (333)
T ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC-------------
Confidence 4689999999999999999999875 49999988 556322 1 1 9999999999
Q ss_pred ceeeEEEEcCccc
Q psy4398 290 LFRSLVTVNGKQY 302 (306)
Q Consensus 290 ~~~~~~~~~~~~~ 302 (306)
++++.++++..|
T Consensus 318 -~~~i~el~~~~~ 329 (333)
T TIGR02151 318 -AKTIAELKKVPL 329 (333)
T ss_pred -CCCHHHHccCCe
Confidence 666666665544
No 50
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.81 E-value=7.1e-19 Score=164.91 Aligned_cols=231 Identities=18% Similarity=0.200 Sum_probs=158.1
Q ss_pred ccccccccccCCceEEccCCCCCCHH------HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLP------FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~------~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++.|.+++.|++.|||++.+... +...+++.|..+.+..+-.. .... ... ..+. .
T Consensus 50 ~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~--~~~~-~~~-~~~~------------~ 113 (352)
T PRK05437 50 LSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAA--LKDP-ELA-DSFS------------V 113 (352)
T ss_pred ceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhh--ccCh-hhH-HHHH------------H
Confidence 88888899999999999999988744 34456778877777664210 0000 000 0000 0
Q ss_pred eecCCCCCCceEEEecCC-----CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 94 FRTCPREKNKIILQIGTA-----DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~-----~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
.+.. ..+.|+++||+.. +++++.++.+.+ ++|+++||++||+.-....++ .+.+.+.+.++++++.+
T Consensus 114 vr~~-~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~--~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~ 185 (352)
T PRK05437 114 VRKV-APDGLLFANLGAVQLYGYGVEEAQRAVEMI--EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSAL 185 (352)
T ss_pred HHHH-CCCceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhh
Confidence 0001 1256899988754 345555555544 679999999988754433322 34556778999999999
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC-------C--------C---CCCCcHHHHHHHHhhC-CC
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE-------R--------P---RHRNRIEMIRTLTQHL-KI 229 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~-------~--------~---~~p~~~~~v~~i~~~~-~i 229 (306)
++||.+|.... ....+.|+.++++|+|+|+++++.... + + .+.+..+.+.++++.+ ++
T Consensus 186 ~vPVivK~~g~---g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~i 262 (352)
T PRK05437 186 PVPVIVKEVGF---GISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDL 262 (352)
T ss_pred CCCEEEEeCCC---CCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCC
Confidence 99999998832 234788999999999999998753100 1 0 0122446778888874 89
Q ss_pred cEEEecCCCCHHHHHHHHHhhh---hhccccCCC-----CC----ch-HH--HHHHHHHhcCC
Q psy4398 230 PVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV-----EK----LP-KT--ILYAHCKYKRF 277 (306)
Q Consensus 230 pvia~GGI~s~~~~~~~l~~~v---~vGrall~~-----p~----~~-~~--~l~~~~~~~g~ 277 (306)
|||++|||++..|+.+++..|+ ++||+++.. +. +. .+ +|+.+|...|+
T Consensus 263 pvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~ 325 (352)
T PRK05437 263 PIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGA 325 (352)
T ss_pred eEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998764 999988754 31 11 12 99999999993
No 51
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.80 E-value=1.3e-18 Score=161.82 Aligned_cols=232 Identities=17% Similarity=0.188 Sum_probs=151.0
Q ss_pred ccccccccccCCceEEccCCCCCC------HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRMNT------LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~------~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++.|.++++||+.|||++.+. ..+...+++.|....+-.. .. ........ ..+..
T Consensus 42 ~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~-~~-~~~~~e~~--~~~~~------------ 105 (326)
T cd02811 42 LSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQ-RA-ALEDPELA--ESFTV------------ 105 (326)
T ss_pred CeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCc-hh-hccChhhh--hHHHH------------
Confidence 888999999999999999998773 3344445666744333221 00 00000000 00000
Q ss_pred eecCCCCCCceEEEecCC-----CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 94 FRTCPREKNKIILQIGTA-----DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~-----~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
.+.. ..+.|+++|++.. +++++.++.+.+ ++|+++||+.||+......++ .+.+.+.+.++.+++.+
T Consensus 106 vr~~-~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~--~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~ 177 (326)
T cd02811 106 VREA-PPNGPLIANLGAVQLNGYGVEEARRAVEMI--EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKAL 177 (326)
T ss_pred HHHh-CCCceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhc
Confidence 0111 1246888888754 455555554444 689999999887753333322 34556778899999999
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC---------C--------CCC---CCCcHHHHHHHHhhC-
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA---------E--------RPR---HRNRIEMIRTLTQHL- 227 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~---------~--------~~~---~p~~~~~v~~i~~~~- 227 (306)
++||.+|.... ..+.+.++.++++|+|+|++++.... + .+. +......+.++++.+
T Consensus 178 ~vPVivK~~g~---g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~ 254 (326)
T cd02811 178 SVPVIVKEVGF---GISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP 254 (326)
T ss_pred CCCEEEEecCC---CCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC
Confidence 99999999732 23468899999999999999874110 0 000 111235667777777
Q ss_pred CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC----CC-----CchHH--HHHHHHHhcCCC
Q psy4398 228 KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP----VE-----KLPKT--ILYAHCKYKRFE 278 (306)
Q Consensus 228 ~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~----~p-----~~~~~--~l~~~~~~~g~~ 278 (306)
++|||++|||++..|+.+++..|+ ++||++|. ++ .+..+ +|+.||...|++
T Consensus 255 ~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~el~~~m~~~G~~ 319 (326)
T cd02811 255 DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELRTAMFLTGAK 319 (326)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 899999999999999999998754 99997654 32 11122 999999999943
No 52
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.76 E-value=6.6e-18 Score=158.14 Aligned_cols=177 Identities=14% Similarity=0.181 Sum_probs=140.9
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCP 98 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (306)
++.++++++|++||++|||.++|+.+||.+++++|+ |+ ++.+.+....
T Consensus 34 ~~~~i~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~-------------------------- 82 (369)
T TIGR01304 34 TAWQIDAYRFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRH-------------------------- 82 (369)
T ss_pred ceeEEcceecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcC--------------------------
Confidence 667889999999999999999999999999999987 76 3333332211
Q ss_pred CCCCceEEEecC--CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 99 REKNKIILQIGT--ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 99 ~~~~p~ivql~g--~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
+...++.+||++ .+++. +++++.+++ +++. .+++++.++++++++.. ++||
T Consensus 83 ~~~~~~~~QI~g~~~~~~~-a~aa~~~~e~~~~~----------------------~~p~l~~~ii~~vr~a~---Vtvk 136 (369)
T TIGR01304 83 EDPDPAIAKIAEAYEEGDQ-AAATRLLQELHAAP----------------------LKPELLGERIAEVRDSG---VITA 136 (369)
T ss_pred CCHHHHHHHHhhcCCChHH-HHHHHHHHHcCCCc----------------------cChHHHHHHHHHHHhcc---eEEE
Confidence 012367799998 56656 888888876 5554 36899999999999873 8999
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC-CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP-RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC--- 251 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~-~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v--- 251 (306)
+|.+ .....++++.++++|+|.|++|+++.++.| .+..+|..+.++.+.+++|||+ |+|.|.+++.++++.|+
T Consensus 137 iRl~--~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV 213 (369)
T TIGR01304 137 VRVS--PQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGV 213 (369)
T ss_pred EecC--CcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEE
Confidence 9963 457889999999999999999999987766 4445678888888889999997 89999999999998754
Q ss_pred hhccc
Q psy4398 252 AFLRN 256 (306)
Q Consensus 252 ~vGra 256 (306)
++|+.
T Consensus 214 ~~G~g 218 (369)
T TIGR01304 214 IVGPG 218 (369)
T ss_pred EECCC
Confidence 55653
No 53
>KOG1799|consensus
Probab=99.68 E-value=7e-17 Score=145.46 Aligned_cols=263 Identities=13% Similarity=0.144 Sum_probs=189.4
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhh--------hhhhhh-------hhcccccccc
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKL--------VKTERK-------VNDLLNTIDF 84 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~--------~~~~~~-------~~~~l~~~~~ 84 (306)
..+..+|++..||+.+++.+..+..++...+...|+|.+.+++...+.- ....+. .+++...+++
T Consensus 103 ~~vd~~G~k~~npf~~~s~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~t~~~~~~p~~~i~~niel 182 (471)
T KOG1799|consen 103 ELVDWDGQKPANPFHQKSKPPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSPTKRSCFIPKRPIPTNIEL 182 (471)
T ss_pred hhccccCccCCCccccCCCCCCccHHHHHhhhhcccchhheeeeecchhhheecccceeeccCCCCccccCCCccchhhh
Confidence 4578899999999999999988888887777788999999887664321 111110 1112222223
Q ss_pred cCCCC-Cc--eeeecCCCCCCceEE---Ee-cCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHH
Q psy4398 85 VDPLD-GS--VVFRTCPREKNKIIL---QI-GTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDI 156 (306)
Q Consensus 85 ~~~~~-~~--~~~~~~~~~~~p~iv---ql-~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~ 156 (306)
+...- +. ..+..+++ ..|+.+ ++ +-++..+|.+++...++ |.|.+|+|++||+.. ...+.|.++.+.|..
T Consensus 183 Isdr~~e~~L~~f~eLk~-~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm-~ergmgla~gq~p~v 260 (471)
T KOG1799|consen 183 ISDRKAEQYLGTFGELKN-VEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGM-CERGMGLALGQCPIV 260 (471)
T ss_pred hccchHHHHHHHHHHhcc-cCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCC-ccccccceeccChhh
Confidence 32100 00 01111221 123333 32 23677889999998875 999999999999974 345789999999999
Q ss_pred HHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc---------------------cCCCCCCC---
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG---------------------RTKAERPR--- 212 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~---------------------~~~~~~~~--- 212 (306)
..|+...++..+.+|++-|+. ++.++..+.++...+.|+.+|.... ++-.++|+
T Consensus 261 ~~EvC~Wi~A~~~Ip~~~kmT--PNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~A 338 (471)
T KOG1799|consen 261 DCEVCGWINAKATIPMVSKMT--PNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKA 338 (471)
T ss_pred hHHHhhhhhhccccccccccC--CCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccc
Confidence 999999999999999999999 8888899999999999999987321 11122332
Q ss_pred -CCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCchH-H--HHHHHHHhcCCCCCcce
Q psy4398 213 -HRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLPK-T--ILYAHCKYKRFEVPKYE 283 (306)
Q Consensus 213 -~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~~-~--~l~~~~~~~g~~~~~~~ 283 (306)
.|..+.-+..|++.. ..|+.+.|||-+.+|+.+.+-.| +|++++... |.-..+ . +|+++|..+|
T Consensus 339 vRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~~~V~~~Ca~LK~~m~~~~------- 411 (471)
T KOG1799|consen 339 VRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELKDFMKQHN------- 411 (471)
T ss_pred cchHHHHHHHHHHHHhhcCccccccCcccccchhhHhhcCCcHhhhhhHHHhcCcchHHHHHHHHHHHHHHcC-------
Confidence 466777777888777 78999999988888777777654 499998754 543333 2 9999999999
Q ss_pred ehhhccceeeEEEEcCc
Q psy4398 284 TVQYEKLFRSLVTVNGK 300 (306)
Q Consensus 284 ~~~~~~~~~~~~~~~~~ 300 (306)
|+++++|||.
T Consensus 412 -------~~ti~~~~G~ 421 (471)
T KOG1799|consen 412 -------FSTIEEFRGH 421 (471)
T ss_pred -------chhhhhccCc
Confidence 9999999996
No 54
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.63 E-value=4.2e-14 Score=130.45 Aligned_cols=200 Identities=18% Similarity=0.194 Sum_probs=139.6
Q ss_pred cccCCceEEccCCCCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceE
Q psy4398 27 INYSNKIILAPMVRMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKII 105 (306)
Q Consensus 27 l~l~n~i~lAPm~~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i 105 (306)
+.++.||+.|||.+.|+..+...+.++| .|.+-....+++.+....+... ...+.|+.
T Consensus 8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~---------------------~~t~~pfg 66 (307)
T TIGR03151 8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVK---------------------ELTDKPFG 66 (307)
T ss_pred hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHH---------------------HhcCCCcE
Confidence 4678999999999999999888766655 5777665544433322111110 01246888
Q ss_pred EEecCCCHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHH
Q psy4398 106 LQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD 184 (306)
Q Consensus 106 vql~g~~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~ 184 (306)
+++....+. +.+..+ .++++.+.|.++.+.|. ++++.+++. ++.++..+.
T Consensus 67 vn~~~~~~~-~~~~~~~~~~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v~------- 117 (307)
T TIGR03151 67 VNIMLLSPF-VDELVDLVIEEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVVA------- 117 (307)
T ss_pred EeeecCCCC-HHHHHHHHHhCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEcC-------
Confidence 988765443 233334 34569999998765542 367777765 778877766
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
..+.++.++++|+|.|+++++...+......++.++.++++.+++|||++|||.|.+++.+++..| +++|+.++.-+
T Consensus 118 s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~ 197 (307)
T TIGR03151 118 SVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAK 197 (307)
T ss_pred CHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhccc
Confidence 367789999999999999998655443223478999999999999999999999999999999874 59999987644
Q ss_pred -CchHHHHHHHHHhcC
Q psy4398 262 -KLPKTILYAHCKYKR 276 (306)
Q Consensus 262 -~~~~~~l~~~~~~~g 276 (306)
.......++.+.+.+
T Consensus 198 Es~~~~~~k~~l~~~~ 213 (307)
T TIGR03151 198 ECNVHPNYKEKVLKAK 213 (307)
T ss_pred ccCCCHHHHHHHHhCC
Confidence 222234555554434
No 55
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.57 E-value=2.5e-13 Score=120.66 Aligned_cols=198 Identities=16% Similarity=0.187 Sum_probs=133.7
Q ss_pred CCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEe
Q psy4398 30 SNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQI 108 (306)
Q Consensus 30 ~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql 108 (306)
++||++|||++.++..++..+.++|+ |++-+++++.+......+.... ..+.|+.+|+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~---------------------~~~~~~~v~~ 60 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRA---------------------LTDKPFGVNL 60 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHH---------------------hcCCCeEEeE
Confidence 68999999999999999998877775 8887777765544322111100 0124677888
Q ss_pred cCCCH-HHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 109 GTADP-ERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 109 ~g~~~-~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
..++. ..+.+.++.+. .|+|+|.++.+.| .++++.+++ .++++.+++. + .
T Consensus 61 i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~~--------------------~~~~~~~~~-~~i~~i~~v~---~----~ 112 (236)
T cd04730 61 LVPSSNPDFEALLEVALEEGVPVVSFSFGPP--------------------AEVVERLKA-AGIKVIPTVT---S----V 112 (236)
T ss_pred ecCCCCcCHHHHHHHHHhCCCCEEEEcCCCC--------------------HHHHHHHHH-cCCEEEEeCC---C----H
Confidence 87653 23445455554 4999999975521 123444443 3677777765 1 2
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p 261 (306)
+.++.+.+.|+|+|.++++...+.... ...+++++++++.+++||++.|||++.+++.++++. ++++|++++..+
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 456677789999999987633222111 235789999999999999999999999999999986 569999998876
Q ss_pred CchH-HHHHHHHHhcC
Q psy4398 262 KLPK-TILYAHCKYKR 276 (306)
Q Consensus 262 ~~~~-~~l~~~~~~~g 276 (306)
..+. .+.++.+.+.+
T Consensus 193 e~~~~~~~~~~~~~~~ 208 (236)
T cd04730 193 ESGASPAYKQALLAAT 208 (236)
T ss_pred ccCCCHHHHHHHHcCC
Confidence 4432 24444444444
No 56
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.56 E-value=6.8e-14 Score=124.99 Aligned_cols=142 Identities=16% Similarity=0.233 Sum_probs=114.3
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEE-----EeccCC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC-----KIRVFH 180 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v-----Kir~g~ 180 (306)
+|++| +...+.++.+.++.|++.+-+ |+.+.++|+++.++++++.+.+.+++.+ |++ ||
T Consensus 78 v~vgG-Girs~edv~~~l~~Ga~kvvi--------------Gs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw 141 (241)
T PRK14024 78 VELSG-GIRDDESLEAALATGCARVNI--------------GTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GW 141 (241)
T ss_pred EEEcC-CCCCHHHHHHHHHCCCCEEEE--------------CchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-Ce
Confidence 56644 334555555666778887655 6788899999999999998776544444 332 66
Q ss_pred Ch--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH------hhhh
Q psy4398 181 NE--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS------LNCA 252 (306)
Q Consensus 181 ~~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~------~~v~ 252 (306)
+. .+..++++.+++.|++.+++|++++++.+.+| +|++++++++.+++|||++|||+|.+|+.++.+ .+++
T Consensus 142 ~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~ 220 (241)
T PRK14024 142 TRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAI 220 (241)
T ss_pred eecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEE
Confidence 43 34789999999999999999999999999987 999999999999999999999999999998863 2569
Q ss_pred hccccCCCCCch
Q psy4398 253 FLRNHYPVEKLP 264 (306)
Q Consensus 253 vGrall~~p~~~ 264 (306)
+||++|.++.-.
T Consensus 221 igra~~~g~~~~ 232 (241)
T PRK14024 221 VGKALYAGAFTL 232 (241)
T ss_pred EeHHHHcCCCCH
Confidence 999999988433
No 57
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.54 E-value=6.2e-13 Score=123.62 Aligned_cols=194 Identities=14% Similarity=0.107 Sum_probs=131.9
Q ss_pred ccccccc-cccCCceEEccCCCCCCHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecC
Q psy4398 20 ANANQAN-INYSNKIILAPMVRMNTLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97 (306)
Q Consensus 20 ~~~~~~~-l~l~n~i~lAPm~~~t~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 97 (306)
+++++.+ +.++.||+.|||.++|+..++....+. |.|.+..++. .+......+. +
T Consensus 23 l~t~l~~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~-~~~~~~~i~~----------------------v 79 (325)
T cd00381 23 LSTKLTKNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMS-IEEQAEEVRK----------------------V 79 (325)
T ss_pred eeEEecCccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCC-HHHHHHHHHH----------------------h
Confidence 6778887 999999999999999999988865555 4588877643 2222111111 1
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEe
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKI 176 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKi 176 (306)
+ +...+.+..+.+++....+...+++|+|.|+++++.. +++.+.++++.+++... +||.+
T Consensus 80 k--~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G---------------~~~~~~~~i~~ik~~~p~v~Vi~-- 140 (325)
T cd00381 80 K--GRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHG---------------HSVYVIEMIKFIKKKYPNVDVIA-- 140 (325)
T ss_pred c--cCceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCC---------------CcHHHHHHHHHHHHHCCCceEEE--
Confidence 1 1223334445566666666666677999999987541 22456778888888753 45544
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEccc------CCCCCCCCCCcHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHH
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGR------TKAERPRHRNRIEMIRTLTQHL---KIPVIANGGSKEIVDYGGVF 247 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~------~~~~~~~~p~~~~~v~~i~~~~---~ipvia~GGI~s~~~~~~~l 247 (306)
. + -.+.+.++.+.++|+|+|.++.. ++.....+.+.+..+..+.+.. ++|||+.|||.+..++.+++
T Consensus 141 G---~-v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAl 216 (325)
T cd00381 141 G---N-VVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKAL 216 (325)
T ss_pred C---C-CCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Confidence 1 1 12467778888999999998532 2222223445777777776654 69999999999999999999
Q ss_pred Hhh---hhhccccCC
Q psy4398 248 SLN---CAFLRNHYP 259 (306)
Q Consensus 248 ~~~---v~vGrall~ 259 (306)
..| +++||.+..
T Consensus 217 a~GA~~VmiGt~fa~ 231 (325)
T cd00381 217 AAGADAVMLGSLLAG 231 (325)
T ss_pred HcCCCEEEecchhcc
Confidence 875 499999875
No 58
>KOG0134|consensus
Probab=99.53 E-value=3.6e-14 Score=131.75 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=116.5
Q ss_pred HHHHHHHHHHh-cCCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhcccc-cEEEEecc----
Q psy4398 114 ERALEAAKKVE-HDVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVSCKIRV---- 178 (306)
Q Consensus 114 ~~~~~aa~~~~-~g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~---- 178 (306)
+.|..||+.+. .|||+||||-. +|..|.|+|+||+++++|.+++.|++++|++.++- -+.+..+.
T Consensus 174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~f 253 (400)
T KOG0134|consen 174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNEF 253 (400)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchhh
Confidence 45777777774 59999999843 79999999999999999999999999999999841 12222222
Q ss_pred ---CCChHHHHHHHHHHHHcCCcEEEEcccCC-------CCCCC----CCCcHHHHHHHHhhCCCcEEEe-cCCCCHHHH
Q psy4398 179 ---FHNEADTIALCKRLEACGIIAIGVHGRTK-------AERPR----HRNRIEMIRTLTQHLKIPVIAN-GGSKEIVDY 243 (306)
Q Consensus 179 ---g~~~~~~~~~a~~l~~~G~d~i~v~~~~~-------~~~~~----~p~~~~~v~~i~~~~~ipvia~-GGI~s~~~~ 243 (306)
+++.++...+|..+++.|.|.+-+++.+. ..+.+ ....++....++...+.|+|.. ||.++.+.+
T Consensus 254 q~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~~ 333 (400)
T KOG0134|consen 254 QDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREAM 333 (400)
T ss_pred hhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHHH
Confidence 45667889999999999999555544321 11111 1124677788888887776655 568999999
Q ss_pred HHHHHh----hhhhccccCCCCCchHH
Q psy4398 244 GGVFSL----NCAFLRNHYPVEKLPKT 266 (306)
Q Consensus 244 ~~~l~~----~v~vGrall~~p~~~~~ 266 (306)
.++++. ++.+||.++++|+++++
T Consensus 334 ~eav~~~~T~~ig~GR~f~anPDLp~r 360 (400)
T KOG0134|consen 334 VEAVKSGRTDLIGYGRPFLANPDLPKR 360 (400)
T ss_pred HHHHhcCCceeEEecchhccCCchhHH
Confidence 999986 56999999999999976
No 59
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.51 E-value=1.7e-13 Score=128.90 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=130.9
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCP 98 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (306)
++.++.++.++.||+.|||.++++..++...+++|. |++..+.+.. +.
T Consensus 37 ls~~~~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~~-------~~------------------------ 85 (368)
T PRK08649 37 TSWQIDAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLWT-------RY------------------------ 85 (368)
T ss_pred eeeeecceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeeccccc-------cC------------------------
Confidence 667889999999999999999999999998878775 8888654320 00
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 99 REKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
....++..||.+.++ .++++.+++ +++ | .+|+++.++++++++. + +.+|++
T Consensus 86 ~~~e~l~~qi~~~~~---~~~~~~~~~~~~~--------P--------------~~p~l~~~iv~~~~~~-~--V~v~vr 137 (368)
T PRK08649 86 EDPEPILDEIASLGK---DEATRLMQELYAE--------P--------------IKPELITERIAEIRDA-G--VIVAVS 137 (368)
T ss_pred CCHHHHHHHHHhcCc---HHHHHHHHHhhcC--------C--------------CCHHHHHHHHHHHHhC-e--EEEEEe
Confidence 011234455555444 334444443 222 2 4689999999999986 4 556666
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AF 253 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~v 253 (306)
. +..+..++++.+.++|+|.|++|+|+.++.|.+.. ++..+.++.+..++|||+ |+|.|.++++++++.|+ ++
T Consensus 138 ~--~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 138 L--SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred c--CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 3 34567899999999999999999999888887665 677777777778999999 88999999999998754 55
Q ss_pred ccc
Q psy4398 254 LRN 256 (306)
Q Consensus 254 Gra 256 (306)
|+.
T Consensus 215 G~G 217 (368)
T PRK08649 215 GIG 217 (368)
T ss_pred CCC
Confidence 543
No 60
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.48 E-value=2.2e-12 Score=110.05 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=127.9
Q ss_pred eEEccCCCCCC---HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec
Q psy4398 33 IILAPMVRMNT---LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG 109 (306)
Q Consensus 33 i~lAPm~~~t~---~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~ 109 (306)
+++++|++..+ ..+...+.++|++++.++.....+....... .+.+....+..+.|+++|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 65 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDD---------------KEVLKEVAAETDLPLGVQLA 65 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCcc---------------ccHHHHHHhhcCCcEEEEEc
Confidence 46788987642 2233345578899999887654432210000 00111222334679999998
Q ss_pred CCCHHHHHH-HHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHH
Q psy4398 110 TADPERALE-AAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~-aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~ 186 (306)
..++.++.. +++.+. .|+|+|+||.+||+. +++..++++++++.+ +.|+.+|++........
T Consensus 66 ~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~- 130 (200)
T cd04722 66 INDAAAAVDIAAAAARAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPTGELAAA- 130 (200)
T ss_pred cCCchhhhhHHHHHHHHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-
Confidence 887766543 345565 499999999999762 788899999999887 89999999853221111
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCC--cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~--~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
.+.+.|+|++.++++........+. ....+..+++..++||+++|||++.+++.++++.++ ++||
T Consensus 131 ----~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 131 ----AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred ----hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 1688999999998876544332221 235566777778999999999999999999998754 5554
No 61
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.48 E-value=4.6e-12 Score=116.98 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=140.2
Q ss_pred ceeeeccc-ccccccccccCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 12 KIFYVLDM-ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 12 ~~~~~~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
+...+.+. +++++++++++-|++.++|....+..+...+++.|. +.+.- + .++......+
T Consensus 18 p~~s~~dvdlst~~~~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~-~~e~~~~~~r---------------- 79 (326)
T PRK05458 18 IVNSRSECDTSVTLGPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-F-DPEARIPFIK---------------- 79 (326)
T ss_pred CCCCHHHcccceEECCcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-C-CHHHHHHHHH----------------
Confidence 44444444 889999999999999999987667777777777664 43333 2 3322111111
Q ss_pred CceeeecCCCCCCceEEEec-CCCHHHHHHHHHHHhcC--CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh
Q psy4398 90 GSVVFRTCPREKNKIILQIG-TADPERALEAAKKVEHD--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS 166 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~ 166 (306)
..+.. .+++++. +.+++++.++.+.+++| +|.|.|....|+ .+.+.++++.+++
T Consensus 80 ------~~~~~--~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh---------------~~~~~e~I~~ir~ 136 (326)
T PRK05458 80 ------DMHEQ--GLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGH---------------SDSVINMIQHIKK 136 (326)
T ss_pred ------hcccc--ccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCc---------------hHHHHHHHHHHHh
Confidence 11111 2355544 45678888888888885 499999877654 3567788999999
Q ss_pred ccc-ccEEEE-eccCCChHHHHHHHHHHHHcCCcEEEEccc---C---CCCCCCCCCcHH--HHHHHHhhCCCcEEEecC
Q psy4398 167 NLS-IPVSCK-IRVFHNEADTIALCKRLEACGIIAIGVHGR---T---KAERPRHRNRIE--MIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 167 ~~~-~pv~vK-ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~---~---~~~~~~~p~~~~--~v~~i~~~~~ipvia~GG 236 (306)
..+ .||.++ +. +.+-++.+.++|+|++.++.. . ......+.++|. .++++++.+++|||+.||
T Consensus 137 ~~p~~~vi~g~V~-------t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGG 209 (326)
T PRK05458 137 HLPETFVIAGNVG-------TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGG 209 (326)
T ss_pred hCCCCeEEEEecC-------CHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCC
Confidence 884 888887 55 456778888999999987522 1 111112234555 589999989999999999
Q ss_pred CCCHHHHHHHHHhhh---hhccccCC
Q psy4398 237 SKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 237 I~s~~~~~~~l~~~v---~vGrall~ 259 (306)
|.+..|+.+++..|+ ++|+++..
T Consensus 210 I~~~~Di~KaLa~GA~aV~vG~~~~~ 235 (326)
T PRK05458 210 IRTHGDIAKSIRFGATMVMIGSLFAG 235 (326)
T ss_pred CCCHHHHHHHHHhCCCEEEechhhcC
Confidence 999999999999864 99999874
No 62
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.48 E-value=1e-12 Score=118.50 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=117.9
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccEEEEecc------
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIRV------ 178 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir~------ 178 (306)
+|++| +...+.++.+.+..|++.|.+| +.+.++++++.++++++. +.+.+++.+|.+.
T Consensus 77 v~~gG-Gi~s~~d~~~l~~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v 141 (258)
T PRK01033 77 LCYGG-GIKTLEQAKKIFSLGVEKVSIN--------------TAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDV 141 (258)
T ss_pred EEECC-CCCCHHHHHHHHHCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEE
Confidence 46644 4445556666666799999996 345678999999999985 3333444444330
Q ss_pred ---CCC---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH-Hh--
Q psy4398 179 ---FHN---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF-SL-- 249 (306)
Q Consensus 179 ---g~~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l-~~-- 249 (306)
||. ..+..++++.+++.|++.+.+|++++++.+.++ +|+.++++++.+++|||++|||.|.+|+.+++ +.
T Consensus 142 ~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~-d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~Gv 220 (258)
T PRK01033 142 YTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGY-DLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGA 220 (258)
T ss_pred EEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCC-CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCC
Confidence 231 234789999999999999999999999999986 99999999999999999999999999999998 44
Q ss_pred -hhhhccccCCC---CCc----hHHHHHHHHHhcCCC
Q psy4398 250 -NCAFLRNHYPV---EKL----PKTILYAHCKYKRFE 278 (306)
Q Consensus 250 -~v~vGrall~~---p~~----~~~~l~~~~~~~g~~ 278 (306)
++.+|++++.. +.. ....++.+|..++++
T Consensus 221 dgVivg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
T PRK01033 221 DAAAAGSLFVFKGVYKAVLINYPNGDEKEELLKAGIP 257 (258)
T ss_pred CEEEEcceeeeCcccccccccccHHHHHHHHHHcCCC
Confidence 56999999754 111 112667777777653
No 63
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.46 E-value=9.5e-13 Score=115.14 Aligned_cols=149 Identities=19% Similarity=0.283 Sum_probs=122.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc---
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--- 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--- 178 (306)
.++-+|++|. ..+...+...+..|++.|-+ |+...++|+++.++++.+.+++-+.+++|...
T Consensus 74 ~~~~vQvGGG-IRs~~~v~~ll~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav 138 (241)
T COG0106 74 TDVPVQVGGG-IRSLEDVEALLDAGVARVII--------------GTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAV 138 (241)
T ss_pred CCCCEEeeCC-cCCHHHHHHHHHCCCCEEEE--------------ecceecCHHHHHHHHHHcCCcEEEEEEccCCcccc
Confidence 3567899654 33445555566679999888 55667899999999999987776677777643
Q ss_pred -CCChH---HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh-h---
Q psy4398 179 -FHNEA---DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL-N--- 250 (306)
Q Consensus 179 -g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~-~--- 250 (306)
||... +..++++.+++.|+..+.+|+.++++...+| |++.+.++.+.+++|||++|||.|.+|.+.+.+. +
T Consensus 139 ~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~-n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G~~G 217 (241)
T COG0106 139 SGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGP-NVDLVKELAEAVDIPVIASGGVSSLDDIKALKELSGVEG 217 (241)
T ss_pred ccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCCC-CHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCCCcE
Confidence 67543 4789999999999999999999999999997 9999999999999999999999999999988876 4
Q ss_pred hhhccccCCCCCchHH
Q psy4398 251 CAFLRNHYPVEKLPKT 266 (306)
Q Consensus 251 v~vGrall~~p~~~~~ 266 (306)
+.+|||||.+-.-...
T Consensus 218 vIvG~ALy~g~~~l~e 233 (241)
T COG0106 218 VIVGRALYEGKFTLEE 233 (241)
T ss_pred EEEehHHhcCCCCHHH
Confidence 4999999988754443
No 64
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.44 E-value=2.1e-12 Score=116.32 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccE-------------EEEeccCCC-
Q psy4398 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPV-------------SCKIRVFHN- 181 (306)
Q Consensus 117 ~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv-------------~vKir~g~~- 181 (306)
.++.+.+..|++.|-+ |....++|+++.++.+.+. +.+-+.+ .||++.+++
T Consensus 87 ~d~~~~~~~Ga~~viv--------------gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~ 152 (254)
T TIGR00735 87 EDVDKLLRAGADKVSI--------------NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRES 152 (254)
T ss_pred HHHHHHHHcCCCEEEE--------------ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCccc
Confidence 3344445569999988 3456678999999988884 4443333 356665433
Q ss_pred -hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccc
Q psy4398 182 -EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRN 256 (306)
Q Consensus 182 -~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGra 256 (306)
..+..++++.+++.|++.|.+|++++++...+ +++++++++++.+++|||++|||+|++++.++++. ++++|++
T Consensus 153 ~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g-~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 153 TGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSG-YDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHH
Confidence 34588999999999999999999888766555 59999999999999999999999999999999985 4599999
Q ss_pred cCCCCCchHHHHHHHHHhcCCCC
Q psy4398 257 HYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 257 ll~~p~~~~~~l~~~~~~~g~~~ 279 (306)
++.+- ....++.++|++.||++
T Consensus 232 ~~~~~-~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 232 FHYRE-ITIGEVKEYLAERGIPV 253 (254)
T ss_pred HhCCC-CCHHHHHHHHHHCCCcc
Confidence 88653 33448899999999863
No 65
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.43 E-value=2.3e-12 Score=115.17 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccEEEEecc---------CC---Ch
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIRV---------FH---NE 182 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir~---------g~---~~ 182 (306)
..++.+.++.|+++|.++ ..+.++|+.+.++++.+. +.+..++++|.+. +| +.
T Consensus 83 ~~d~~~~l~~G~~~v~ig--------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~ 148 (243)
T cd04731 83 LEDARRLLRAGADKVSIN--------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTG 148 (243)
T ss_pred HHHHHHHHHcCCceEEEC--------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecC
Confidence 344444445699999885 345578999999999885 3566777777542 22 23
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHY 258 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall 258 (306)
.+..++++.+++.|+|+|++|+++..+...+ .++++++++++.+++|||++|||+|+++++++++. ++++||+++
T Consensus 149 ~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 149 LDAVEWAKEVEELGAGEILLTSMDRDGTKKG-YDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHH
Confidence 4588999999999999999999887666555 48999999999999999999999999999999986 459999998
Q ss_pred CCCCchHHHHHHHHHhc
Q psy4398 259 PVEKLPKTILYAHCKYK 275 (306)
Q Consensus 259 ~~p~~~~~~l~~~~~~~ 275 (306)
.+-. ...++.++|.+|
T Consensus 228 ~~~~-~~~~~~~~~~~~ 243 (243)
T cd04731 228 FGEY-TIAELKEYLAER 243 (243)
T ss_pred cCCC-CHHHHHHHHhhC
Confidence 7542 233666666654
No 66
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.40 E-value=2.2e-12 Score=120.55 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=150.5
Q ss_pred ccccccccccCCceEEccCCC--C----CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR--M----NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--~----t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++|||.. . .+......+.+.|...+++-..+ .++.. +
T Consensus 62 ~~t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~-~s~Ee----------------------i 118 (351)
T cd04737 62 TSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSN-TSLEE----------------------I 118 (351)
T ss_pred CceEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCC-CCHHH----------------------H
Confidence 888999999999999999983 1 12334445667777666554321 11100 0
Q ss_pred eecCCCCCCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc-C---Cc------------------ccc
Q psy4398 94 FRTCPREKNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT-G---GM------------------GAA 149 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~-~---~~------------------G~~ 149 (306)
.... .+.+...|+.- .+.+...+..+++++ ||.+|-+...+|..-.+. + ++ |..
T Consensus 119 ~~~~--~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 196 (351)
T cd04737 119 AKAS--NGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKG 196 (351)
T ss_pred HHhc--CCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcc
Confidence 0000 13478899875 456666667777875 999999987664321110 0 00 000
Q ss_pred cc-----CChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHH
Q psy4398 150 LL-----STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLT 224 (306)
Q Consensus 150 l~-----~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~ 224 (306)
.. .++.+.-+.++.+++.++.||.+|-- . ..+.++.+.++|+|+|++++-...+...+|..++.+.+++
T Consensus 197 ~~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv--~----~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~ 270 (351)
T cd04737 197 ISEIYAAAKQKLSPADIEFIAKISGLPVIVKGI--Q----SPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIA 270 (351)
T ss_pred hhhhhhhccCCCCHHHHHHHHHHhCCcEEEecC--C----CHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHH
Confidence 00 01223346778899989999999932 1 3477788899999999994322222334567789999999
Q ss_pred hhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC---------CchH---HHHHHHHHhcCCC
Q psy4398 225 QHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE---------KLPK---TILYAHCKYKRFE 278 (306)
Q Consensus 225 ~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p---------~~~~---~~l~~~~~~~g~~ 278 (306)
+++ ++|||+.|||++..|+-+++..| |++||+++.+. ...+ .+|+.+|...|++
T Consensus 271 ~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 271 EAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred HHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 988 69999999999999999999875 49999987653 1111 2899999999943
No 67
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.40 E-value=2.4e-12 Score=115.22 Aligned_cols=132 Identities=23% Similarity=0.300 Sum_probs=103.0
Q ss_pred HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc
Q psy4398 117 LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~ 195 (306)
.++|+++++ ||+.|.+|.+||+..+..+ |...+++|+.+. ++++.+++||+.|.|.|. ..-|+.|++.
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-----~~Ea~~L~~~ 95 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIMDAVSIPVMAKARIGH-----FVEAQILEAL 95 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-----HHHHHHHHHc
Confidence 567788875 9999999999999865444 889999999765 667778999999999643 5667777888
Q ss_pred CCcEEEEcccCC----------------------------------------C-------------------------CC
Q psy4398 196 GIIAIGVHGRTK----------------------------------------A-------------------------ER 210 (306)
Q Consensus 196 G~d~i~v~~~~~----------------------------------------~-------------------------~~ 210 (306)
|+|.|.-+.+.+ . ..
T Consensus 96 GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~g 175 (293)
T PRK04180 96 GVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTS 175 (293)
T ss_pred CCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 888886432210 0 00
Q ss_pred C----------CCCCcHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 211 P----------RHRNRIEMIRTLTQHLKIPVI--ANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 211 ~----------~~p~~~~~v~~i~~~~~ipvi--a~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
| ...++++.++++++..++||+ +.|||.+++++..+++.| +.+|++++.
T Consensus 176 yt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 176 MSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 1 123578999999999999998 999999999999999875 499999984
No 68
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.35 E-value=7.9e-11 Score=108.40 Aligned_cols=202 Identities=12% Similarity=0.080 Sum_probs=139.5
Q ss_pred ceeeeccc-ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 12 KIFYVLDM-ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 12 ~~~~~~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
+-..+.|. +++++.++++.-||+.++|....+..+...+++.|.-.+.-++ .++......+
T Consensus 15 p~~s~~dVdlst~~~~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~-~~E~~~sfvr----------------- 76 (321)
T TIGR01306 15 IVNSRSECDTSVTLGKHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHRF-DEESRIPFIK----------------- 76 (321)
T ss_pred CCCCHHHceeeEEECCcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEecC-CHHHHHHHHH-----------------
Confidence 33334444 8899999999999999999877777788877787754555553 3333221111
Q ss_pred ceeeecCCCCCCceEEEecCCCHHHHHHHHHHHhcC--CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHD--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
..++.+.++++.+ |.+++++..+...+++| .|.|-+..++- +.+.+.+.++.+++.+
T Consensus 77 -----k~k~~~L~v~~Sv-G~t~e~~~r~~~lv~a~~~~d~i~~D~ahg---------------~s~~~~~~i~~i~~~~ 135 (321)
T TIGR01306 77 -----DMQERGLFASISV-GVKACEYEFVTQLAEEALTPEYITIDIAHG---------------HSNSVINMIKHIKTHL 135 (321)
T ss_pred -----hccccccEEEEEc-CCCHHHHHHHHHHHhcCCCCCEEEEeCccC---------------chHHHHHHHHHHHHhC
Confidence 1111233344444 77788899998888887 69888865431 3467788899999988
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc---ccC---CCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCH
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH---GRT---KAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~---~~~---~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~ 240 (306)
..|+.++=.+ .+.+.|+.|.++|+|+|.++ ++. +.. ...+.+.+..+.+++++.++|||+.|||++.
T Consensus 136 p~~~vi~GnV-----~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~ 210 (321)
T TIGR01306 136 PDSFVIAGNV-----GTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTH 210 (321)
T ss_pred CCCEEEEecC-----CCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcH
Confidence 6663333221 15788889999999999987 221 111 1111234568899999999999999999999
Q ss_pred HHHHHHHHhhh---hhcccc
Q psy4398 241 VDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 241 ~~~~~~l~~~v---~vGral 257 (306)
.|+.+++..|+ ++||.+
T Consensus 211 ~Di~KALa~GAd~Vmig~~~ 230 (321)
T TIGR01306 211 GDIAKSIRFGASMVMIGSLF 230 (321)
T ss_pred HHHHHHHHcCCCEEeechhh
Confidence 99999998864 888876
No 69
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.35 E-value=7.1e-12 Score=111.23 Aligned_cols=140 Identities=19% Similarity=0.240 Sum_probs=109.9
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec----cCCC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR----VFHN 181 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir----~g~~ 181 (306)
+|+ +....+..++.+..+.|++.|-+ |+.+.++++.+.++++.+.+.+.+++++|.+ .+|.
T Consensus 77 v~~-~GGI~~~ed~~~~~~~Ga~~vil--------------g~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~ 141 (233)
T PRK00748 77 VQV-GGGIRSLETVEALLDAGVSRVII--------------GTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWL 141 (233)
T ss_pred EEE-cCCcCCHHHHHHHHHcCCCEEEE--------------CchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCe
Confidence 344 33334445554555569999865 4566778999999999987766666666522 1342
Q ss_pred ---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhc
Q psy4398 182 ---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFL 254 (306)
Q Consensus 182 ---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vG 254 (306)
..+..++++.+++.|++.+.+|++++++.+.+ ++++.++++++.+++|+|++|||.|.+|++++++.+ +++|
T Consensus 142 ~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg 220 (233)
T PRK00748 142 ETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVG 220 (233)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEE
Confidence 23468999999999999999999999999988 599999999999999999999999999999999864 5999
Q ss_pred cccCCCC
Q psy4398 255 RNHYPVE 261 (306)
Q Consensus 255 rall~~p 261 (306)
|+++.+-
T Consensus 221 ~a~~~~~ 227 (233)
T PRK00748 221 RALYEGK 227 (233)
T ss_pred HHHHcCC
Confidence 9998763
No 70
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.35 E-value=1.6e-11 Score=110.40 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=112.6
Q ss_pred HHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcc----c-------ccEEEEeccCCCh--
Q psy4398 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNL----S-------IPVSCKIRVFHNE-- 182 (306)
Q Consensus 117 ~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~----~-------~pv~vKir~g~~~-- 182 (306)
.++.+.+..|++.|.++ +.+..+|+.+.++.+.+. +.+ + .|+.||+|.+++.
T Consensus 87 ~~~~~~l~~Ga~~Viig--------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~ 152 (253)
T PRK02083 87 EDARRLLRAGADKVSIN--------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTG 152 (253)
T ss_pred HHHHHHHHcCCCEEEEC--------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecC
Confidence 33334444699999884 455678999999988873 222 2 3567888865432
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHY 258 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall 258 (306)
.+..++++.+++.|++.+.+|+..+.+...++ +|++++++++.+++|||++|||.|.+|+.++++. ++++|++++
T Consensus 153 ~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~ 231 (253)
T PRK02083 153 LDAVEWAKEVEELGAGEILLTSMDRDGTKNGY-DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFH 231 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHH
Confidence 24788999999999999999987766666665 8999999999999999999999999999998874 459999998
Q ss_pred CCCCchHHHHHHHHHhcCCC
Q psy4398 259 PVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 259 ~~p~~~~~~l~~~~~~~g~~ 278 (306)
.+- ....++.++|++.|++
T Consensus 232 ~~~-~~~~~~~~~~~~~~~~ 250 (253)
T PRK02083 232 FGE-ITIGELKAYLAEQGIP 250 (253)
T ss_pred cCC-CCHHHHHHHHHHCCCc
Confidence 653 3334778888888865
No 71
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.35 E-value=1.1e-11 Score=110.08 Aligned_cols=141 Identities=21% Similarity=0.270 Sum_probs=109.7
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEecc----CC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIRV----FH 180 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~----g~ 180 (306)
+|+.|. ..+..++.+.++.|+|.|-+ |.....+|+++.++.+.+.+ .+-.++.+|.+. +|
T Consensus 76 v~~~Gg-I~~~e~~~~~~~~Gad~vvi--------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~ 140 (234)
T cd04732 76 VQVGGG-IRSLEDIERLLDLGVSRVII--------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGW 140 (234)
T ss_pred EEEeCC-cCCHHHHHHHHHcCCCEEEE--------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCC
Confidence 555443 44455555556679999876 34556789999999888754 444455554321 22
Q ss_pred ---ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhc
Q psy4398 181 ---NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFL 254 (306)
Q Consensus 181 ---~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vG 254 (306)
...+..++++.+++.|++.+++|++++.+.+.+ .+++.++++++.+++||+++|||++.+++.++++.+ +++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 141 LETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred eeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 233578999999999999999999988888877 589999999999999999999999999999999874 5999
Q ss_pred cccCCCCC
Q psy4398 255 RNHYPVEK 262 (306)
Q Consensus 255 rall~~p~ 262 (306)
|+++.++.
T Consensus 220 ~~~~~~~~ 227 (234)
T cd04732 220 KALYEGKI 227 (234)
T ss_pred HHHHcCCC
Confidence 99999884
No 72
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.35 E-value=9.9e-12 Score=110.93 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=107.9
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccEEEE---ec-cCC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCK---IR-VFH 180 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vK---ir-~g~ 180 (306)
+|+ +.+..+..++...++.|+|.|-+ |+..+++++.+.++.+.+. +.+-+.+++| +. .||
T Consensus 79 l~v-~GGi~~~~~~~~~~~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~ 143 (241)
T PRK13585 79 VQL-GGGIRSAEDAASLLDLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGW 143 (241)
T ss_pred EEE-cCCcCCHHHHHHHHHcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCC
Confidence 444 44444455555555679999877 4456678999888888873 3433345543 11 144
Q ss_pred Ch---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhc
Q psy4398 181 NE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFL 254 (306)
Q Consensus 181 ~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vG 254 (306)
+. .+..++++.+++.|++.|++|+++.++...+ .+++.++++++.+++||+++|||+|.+++.++.+. ++++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g-~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 144 TEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEG-VNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 32 2578999999999999999999887776655 59999999999999999999999999999998775 45999
Q ss_pred cccCCCCCch
Q psy4398 255 RNHYPVEKLP 264 (306)
Q Consensus 255 rall~~p~~~ 264 (306)
++++.+|...
T Consensus 223 sa~~~~~~~~ 232 (241)
T PRK13585 223 SALYKGKFTL 232 (241)
T ss_pred HHHhcCCcCH
Confidence 9999998543
No 73
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.34 E-value=5.6e-11 Score=111.08 Aligned_cols=229 Identities=14% Similarity=0.124 Sum_probs=149.4
Q ss_pred ccccccccccCCceEEccCCC---CCC---HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR---MNT---LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~---~t~---~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++|||.. ... ......+.+.|..++++-..+. ++. .+
T Consensus 54 ~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~-s~e----------------------~v 110 (344)
T cd02922 54 TSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASC-SLE----------------------EI 110 (344)
T ss_pred CceEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccC-CHH----------------------HH
Confidence 788899999999999999993 222 2244445667766666543221 100 00
Q ss_pred eecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc----CCc-------------------cc
Q psy4398 94 FRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT----GGM-------------------GA 148 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~----~~~-------------------G~ 148 (306)
.+... .+.|...||. ..+.+...+..+++++ ||+++-+++..|..-.|. .++ +.
T Consensus 111 ~~~~~-~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 189 (344)
T cd02922 111 VDARP-PDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAG 189 (344)
T ss_pred HHhcC-CCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHH
Confidence 11111 1357889986 5677777888888875 999999998887321100 000 00
Q ss_pred cc---cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHh
Q psy4398 149 AL---LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ 225 (306)
Q Consensus 149 ~l---~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~ 225 (306)
.. ..++....+.++.+++.++.||.+|-- . ..+-++.+.++|+|+|++++.........+..++.+.++++
T Consensus 190 ~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv---~---~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~ 263 (344)
T cd02922 190 RAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGV---Q---TVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRK 263 (344)
T ss_pred HHHhhccCCCCCHHHHHHHHHhcCCcEEEEcC---C---CHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHH
Confidence 00 112334567789999999999999933 2 36777888999999999975321111111223445555555
Q ss_pred ---hC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC---------chH---HHHHHHHHhcCCC
Q psy4398 226 ---HL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK---------LPK---TILYAHCKYKRFE 278 (306)
Q Consensus 226 ---~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~---------~~~---~~l~~~~~~~g~~ 278 (306)
.+ ++|||+.|||++..|+-+++..|+ ++||+++..+. ... .+|+.+|...|.+
T Consensus 264 ~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 264 HCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred HHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33 599999999999999999998764 99999988763 222 1888999998843
No 74
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.33 E-value=8.2e-11 Score=109.87 Aligned_cols=201 Identities=17% Similarity=0.218 Sum_probs=120.8
Q ss_pred cccCCceEEccCCCCCCHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceE
Q psy4398 27 INYSNKIILAPMVRMNTLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKII 105 (306)
Q Consensus 27 l~l~n~i~lAPm~~~t~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i 105 (306)
+.++.||+.|||.+.++..+...+.++ |.|.+-+...+++.+....+....+ .+.|+.
T Consensus 8 lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~---------------------t~~pfg 66 (330)
T PF03060_consen 8 LGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRAL---------------------TDKPFG 66 (330)
T ss_dssp HT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH----------------------SS-EE
T ss_pred hCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhh---------------------cccccc
Confidence 567999999999999999998876565 4688887666554433222211111 134888
Q ss_pred EEecCCC--HHHH--------HHH-HHH---------------HhcCCCEEEEccCCCccccccCCccccccCChHHHHH
Q psy4398 106 LQIGTAD--PERA--------LEA-AKK---------------VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACN 159 (306)
Q Consensus 106 vql~g~~--~~~~--------~~a-a~~---------------~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~e 159 (306)
+++.... +... ... ... ++.+.+.|.+.+|.|. .+
T Consensus 67 vnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~-------------------~~ 127 (330)
T PF03060_consen 67 VNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPP-------------------PE 127 (330)
T ss_dssp EEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC--------------------HH
T ss_pred ccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccch-------------------HH
Confidence 8886432 2221 001 111 1224558888888775 23
Q ss_pred HHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-C--CcHHHHHHHHhhCCCcEEEecC
Q psy4398 160 ILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH-R--NRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 160 iv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p--~~~~~v~~i~~~~~ipvia~GG 236 (306)
+++.+++ .++.++..+. ..+.|+.+.+.|+|.|++.|....+ +.+ + ..+.++.++++.+++|||+.||
T Consensus 128 ~i~~l~~-~gi~v~~~v~-------s~~~A~~a~~~G~D~iv~qG~eAGG-H~g~~~~~~~~L~~~v~~~~~iPViaAGG 198 (330)
T PF03060_consen 128 VIERLHA-AGIKVIPQVT-------SVREARKAAKAGADAIVAQGPEAGG-HRGFEVGSTFSLLPQVRDAVDIPVIAAGG 198 (330)
T ss_dssp HHHHHHH-TT-EEEEEES-------SHHHHHHHHHTT-SEEEEE-TTSSE-E---SSG-HHHHHHHHHHH-SS-EEEESS
T ss_pred HHHHHHH-cCCccccccC-------CHHHHHHhhhcCCCEEEEeccccCC-CCCccccceeeHHHHHhhhcCCcEEEecC
Confidence 4566655 4788888888 4677888999999999999875432 222 2 2578889999999999999999
Q ss_pred CCCHHHHHHHHHh---hhhhccccCCCCCch-HHHHHHHHHhcC
Q psy4398 237 SKEIVDYGGVFSL---NCAFLRNHYPVEKLP-KTILYAHCKYKR 276 (306)
Q Consensus 237 I~s~~~~~~~l~~---~v~vGrall~~p~~~-~~~l~~~~~~~g 276 (306)
|.|.+++..++.. +|++||.++.=++.. ....++.+.+.+
T Consensus 199 I~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~~l~~a~ 242 (330)
T PF03060_consen 199 IADGRGIAAALALGADGVQMGTRFLATEESGASDAYKQALVDAT 242 (330)
T ss_dssp --SHHHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHHHHHHGG
T ss_pred cCCHHHHHHHHHcCCCEeecCCeEEecccccChHHHHHHHHhCC
Confidence 9999999999986 459999998654222 224444444433
No 75
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=99.32 E-value=5.1e-11 Score=102.75 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc-C----C---
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV-F----H--- 180 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~-g----~--- 180 (306)
|....+..++.+.+..|+|-|.|| ++...+|+++.++.+++-.++ .+.++.|-+. | |
T Consensus 80 GGGI~s~eD~~~ll~aGADKVSIN--------------saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~ 145 (256)
T COG0107 80 GGGIRSVEDARKLLRAGADKVSIN--------------SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVF 145 (256)
T ss_pred cCCcCCHHHHHHHHHcCCCeeeeC--------------hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEE
Confidence 666666677778888999999998 334578999999999996554 6778888752 1 1
Q ss_pred -------ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh-h-
Q psy4398 181 -------NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN-C- 251 (306)
Q Consensus 181 -------~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~-v- 251 (306)
+.-++.++++.+++.|+..|.++.+.+++...+ +++++++.+++.+++||||+||..++++..+++..+ +
T Consensus 146 ~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~G-yDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~ad 224 (256)
T COG0107 146 THGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAG-YDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKAD 224 (256)
T ss_pred ecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccC-cCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCcc
Confidence 113589999999999999999999998887776 699999999999999999999999999999999765 3
Q ss_pred -hhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 252 -AFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 252 -~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
+++-.++.--...-.++++||.++|+++
T Consensus 225 AaLAAsiFH~~~~~i~evK~yL~~~gi~V 253 (256)
T COG0107 225 AALAASIFHFGEITIGEVKEYLAEQGIEV 253 (256)
T ss_pred HHHhhhhhhcCcccHHHHHHHHHHcCCCc
Confidence 5555555533444459999999999873
No 76
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=99.32 E-value=5.6e-11 Score=106.13 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=122.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCC----hHHHHHHHHHH-HhcccccEEEEe
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST----PDIACNILTTL-ISNLSIPVSCKI 176 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~----~~~~~eiv~~v-~~~~~~pv~vKi 176 (306)
.++-+|++|.-. . .++.+.+..|++.|-|| +...++ |+++.++++.+ .+.+-+.+++|.
T Consensus 82 ~~~~vqvGGGIR-~-e~i~~~l~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~ 145 (262)
T PLN02446 82 YPGGLQVGGGVN-S-ENAMSYLDAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK 145 (262)
T ss_pred CCCCEEEeCCcc-H-HHHHHHHHcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 357799987665 3 55556667899999995 334455 99999999999 677777788873
Q ss_pred cc--------CCChH---HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 177 RV--------FHNEA---DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 177 r~--------g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
.. ||... +..+++..+++.|++.+.++...+++...+| ++++++++++.+++|||++|||.|++|+.+
T Consensus 146 ~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~-d~el~~~l~~~~~ipVIASGGv~sleDi~~ 224 (262)
T PLN02446 146 KDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGI-DEELVALLGEHSPIPVTYAGGVRSLDDLER 224 (262)
T ss_pred cCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCC-CHHHHHHHHhhCCCCEEEECCCCCHHHHHH
Confidence 21 56432 4788889999999999999999999999886 999999999999999999999999999999
Q ss_pred HHHh-----hhhhcccc--CCCCCchHHHHHHHHHh
Q psy4398 246 VFSL-----NCAFLRNH--YPVEKLPKTILYAHCKY 274 (306)
Q Consensus 246 ~l~~-----~v~vGral--l~~p~~~~~~l~~~~~~ 274 (306)
+.+. ++.+|+|| |.+-. .-.++-+|-++
T Consensus 225 L~~~g~g~~gvIvGkAl~~y~g~~-~l~ea~~~~~~ 259 (262)
T PLN02446 225 VKVAGGGRVDVTVGSALDIFGGNL-PYDDVVAWHKQ 259 (262)
T ss_pred HHHcCCCCEEEEEEeeHHHhCCCc-cHHHHHHHHhh
Confidence 8875 45999999 77653 22244556443
No 77
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.30 E-value=3.2e-11 Score=107.13 Aligned_cols=139 Identities=20% Similarity=0.211 Sum_probs=104.6
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC-
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF- 179 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g- 179 (306)
+.|+ |+ ++++..+.++.+..+.|++.|.++ +.+.++++++.++++.+.+.. ++++++++.+
T Consensus 74 ~~pv--~~-~ggi~~~~d~~~~~~~G~~~vilg--------------~~~l~~~~~~~~~~~~~~~~~-i~vsld~~~~~ 135 (232)
T TIGR03572 74 FMPL--TV-GGGIRSLEDAKKLLSLGADKVSIN--------------TAALENPDLIEEAARRFGSQC-VVVSIDVKKEL 135 (232)
T ss_pred CCCE--EE-ECCCCCHHHHHHHHHcCCCEEEEC--------------hhHhcCHHHHHHHHHHcCCce-EEEEEEeccCC
Confidence 3454 44 444455555556556699999885 456788999999998874432 3455554431
Q ss_pred -----------CC---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 180 -----------HN---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 180 -----------~~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
|+ ..+..++++.+++.|+|.+++|+++..+...++ ++++++++++.+++||+++|||+|++++++
T Consensus 136 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~-~~~~~~~i~~~~~ipvia~GGi~s~~di~~ 214 (232)
T TIGR03572 136 DGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGY-DLELIKTVSDAVSIPVIALGGAGSLDDLVE 214 (232)
T ss_pred CCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCC-CHHHHHHHHhhCCCCEEEECCCCCHHHHHH
Confidence 21 234789999999999999999998887777664 899999999999999999999999999999
Q ss_pred HHH-h---hhhhccccC
Q psy4398 246 VFS-L---NCAFLRNHY 258 (306)
Q Consensus 246 ~l~-~---~v~vGrall 258 (306)
+++ . ++++|+|+.
T Consensus 215 ~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 215 VALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHcCCCEEEEehhhh
Confidence 554 3 569999874
No 78
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.28 E-value=4.8e-11 Score=105.77 Aligned_cols=140 Identities=21% Similarity=0.284 Sum_probs=107.0
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccEEEEec----cCC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIR----VFH 180 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir----~g~ 180 (306)
+|+. .......++.+..+.|+|.|-+ |+...++++.+.++++++. +.+-.++.+|.+ .||
T Consensus 75 i~~g-gGI~~~ed~~~~~~~Ga~~vvl--------------gs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 75 VQVG-GGIRSLEDVEKLLDLGVDRVII--------------GTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGW 139 (230)
T ss_pred EEEe-CCcCCHHHHHHHHHcCCCEEEE--------------ChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCC
Confidence 4553 3444445555555679999866 3455678899999999985 444444554422 134
Q ss_pred Ch---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhc
Q psy4398 181 NE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFL 254 (306)
Q Consensus 181 ~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vG 254 (306)
.. .+..++++.+++.|++.+++|++++.+...+ .++++++++++.+++|++++|||+|.+|++++++.| +++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 140 LEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG-PNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred cccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 32 3468899999999999999999998887776 489999999999999999999999999999988864 5999
Q ss_pred cccCCCC
Q psy4398 255 RNHYPVE 261 (306)
Q Consensus 255 rall~~p 261 (306)
|+++.+-
T Consensus 219 ~a~~~~~ 225 (230)
T TIGR00007 219 KALYEGK 225 (230)
T ss_pred HHHHcCC
Confidence 9998764
No 79
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.28 E-value=1.8e-10 Score=108.01 Aligned_cols=228 Identities=11% Similarity=0.080 Sum_probs=148.9
Q ss_pred ccccccccccCCceEEccCCCC------CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRM------NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~------t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+..- .+......+.+.|.-.+.+-..+ .++.. +
T Consensus 70 ~~t~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss-~slEe----------------------v 126 (367)
T TIGR02708 70 TEIEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYST-ADLPE----------------------I 126 (367)
T ss_pred CceeeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeeccccc-CCHHH----------------------H
Confidence 7888999999999999998831 12334555667776666654321 11110 1
Q ss_pred eecCCCCCCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc---------------------CCccccc
Q psy4398 94 FRTCPREKNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT---------------------GGMGAAL 150 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~---------------------~~~G~~l 150 (306)
.... .+.+...||.- .+.+-..+..+++++ ||.+|-|..-+|..-.|. .+.+..+
T Consensus 127 ~~~~--~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 204 (367)
T TIGR02708 127 SEAL--NGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSM 204 (367)
T ss_pred Hhhc--CCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccch
Confidence 1110 13478899875 455555777788875 999999977665321110 0000000
Q ss_pred c-----CChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHh
Q psy4398 151 L-----STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ 225 (306)
Q Consensus 151 ~-----~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~ 225 (306)
. .++.+.-+-++.+++.++.||.||= .. ..+.++.+.++|+|+|.|++-...+.+..|..|+.+.++++
T Consensus 205 ~~~~~~~~~~~~w~~i~~l~~~~~~PvivKG---v~---~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~ 278 (367)
T TIGR02708 205 DNVYKSAKQKLSPRDIEEIAGYSGLPVYVKG---PQ---CPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAE 278 (367)
T ss_pred hhhccccCCCCCHHHHHHHHHhcCCCEEEeC---CC---CHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHH
Confidence 0 0122223567888888999999992 22 36788888999999998754433445566778999999999
Q ss_pred hC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC-----CCchH-------HHHHHHHHhcCCC
Q psy4398 226 HL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV-----EKLPK-------TILYAHCKYKRFE 278 (306)
Q Consensus 226 ~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~-----p~~~~-------~~l~~~~~~~g~~ 278 (306)
++ ++|||++|||++..|+.+++..|+ ++||+++.. ..-.. .+|+.-|.-.|.+
T Consensus 279 av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~ 348 (367)
T TIGR02708 279 AVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQ 348 (367)
T ss_pred HhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88 499999999999999999998754 999987643 11111 1666667777733
No 80
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.25 E-value=3.4e-10 Score=104.10 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=117.8
Q ss_pred CCceEEccCCCCCC-HHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEE
Q psy4398 30 SNKIILAPMVRMNT-LPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQ 107 (306)
Q Consensus 30 ~n~i~lAPm~~~t~-~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivq 107 (306)
+.||+.+||.++++ ..+...+.++| .|++-....+++.+....+....+ ..+.|+.++
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l--------------------~tdkPfGVn 61 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEETAEL--------------------LGDKPWGVG 61 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHh--------------------ccCCCeEEE
Confidence 67999999999998 67777766655 576665555444332211111110 025699999
Q ss_pred ecCCCH-HHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHH
Q psy4398 108 IGTADP-ERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT 185 (306)
Q Consensus 108 l~g~~~-~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~ 185 (306)
|....+ +.+.+..+.+ +++.+.|.+..+.|. . ++.+++ .++.++..+. +
T Consensus 62 l~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~-----------------~----~~~lk~-~Gi~v~~~v~-------s 112 (320)
T cd04743 62 ILGFVDTELRAAQLAVVRAIKPTFALIAGGRPD-----------------Q----ARALEA-IGISTYLHVP-------S 112 (320)
T ss_pred EeccCCCcchHHHHHHHHhcCCcEEEEcCCChH-----------------H----HHHHHH-CCCEEEEEeC-------C
Confidence 854321 1233334433 458899988765543 1 245554 4888887777 4
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC----------CCcEEEecCCCCHHHHHHHHHh-----
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL----------KIPVIANGGSKEIVDYGGVFSL----- 249 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~----------~ipvia~GGI~s~~~~~~~l~~----- 249 (306)
.+.++.+++.|+|.|++.|....+. .++ ..+.++.++.+.+ ++|||+.|||.|...+..++..
T Consensus 113 ~~~A~~a~~~GaD~vVaqG~EAGGH-~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~ 191 (320)
T cd04743 113 PGLLKQFLENGARKFIFEGRECGGH-VGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLA 191 (320)
T ss_pred HHHHHHHHHcCCCEEEEecCcCcCC-CCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCccc
Confidence 6778999999999999998765443 232 1233444444333 7999999999999887666643
Q ss_pred ------hhhhccccCCCC
Q psy4398 250 ------NCAFLRNHYPVE 261 (306)
Q Consensus 250 ------~v~vGrall~~p 261 (306)
+++||+.++.=+
T Consensus 192 ~~Ga~~GV~mGTrFl~t~ 209 (320)
T cd04743 192 ERGAKVGVLMGTAYLFTE 209 (320)
T ss_pred ccccccEEEEccHHhcch
Confidence 679999988644
No 81
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.20 E-value=1.9e-09 Score=102.12 Aligned_cols=216 Identities=13% Similarity=0.086 Sum_probs=132.5
Q ss_pred ccccc-cccccCCceEEccCCCCCCHHHHHHHHH-cCCCEEEecceechhhhhhhhhhh------cccccccccCC----
Q psy4398 20 ANANQ-ANINYSNKIILAPMVRMNTLPFRLLALD-YGADLVYSEELVDHKLVKTERKVN------DLLNTIDFVDP---- 87 (306)
Q Consensus 20 ~~~~~-~~l~l~n~i~lAPm~~~t~~~~r~~~~~-~G~g~~~te~~~~~~~~~~~~~~~------~~l~~~~~~~~---- 87 (306)
+++++ ..+.++-||+.|||.++++..+.....+ +|.|.+- ...+++.+....+... ++..+.+...+
T Consensus 31 l~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~-~~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~ 109 (404)
T PRK06843 31 LKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIH-KNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEI 109 (404)
T ss_pred ccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEec-CCCCHHHHHHHHHHHHhhcCCCceeecccccccchhh
Confidence 55566 4788999999999999999988876545 4567665 4455554332211110 01000000000
Q ss_pred -----CC-----------CceeeecCCCCCCc--eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCcccc
Q psy4398 88 -----LD-----------GSVVFRTCPREKNK--IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149 (306)
Q Consensus 88 -----~~-----------~~~~~~~~~~~~~p--~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~ 149 (306)
+. .+.+-..+.+.... +.+.+ +.+++.+.++...+++|+|.|-|..+.++
T Consensus 110 ~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aav-g~~~~~~~~v~~lv~aGvDvI~iD~a~g~----------- 177 (404)
T PRK06843 110 FTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAV-SIDIDTIERVEELVKAHVDILVIDSAHGH----------- 177 (404)
T ss_pred eeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEE-eCCHHHHHHHHHHHhcCCCEEEEECCCCC-----------
Confidence 00 00000111111112 23333 44567777777777889999999766533
Q ss_pred ccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC-------CCCCCCcHHHH-
Q psy4398 150 LLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE-------RPRHRNRIEMI- 220 (306)
Q Consensus 150 l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~-------~~~~p~~~~~v- 220 (306)
.+.+.++++.+++.+ +.+|.++-= . +.+-++.+.++|+|+|.+ +.+... ...+.+.+..+
T Consensus 178 ----~~~~~~~v~~ik~~~p~~~vi~g~V--~----T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~ 246 (404)
T PRK06843 178 ----STRIIELVKKIKTKYPNLDLIAGNI--V----TKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAIC 246 (404)
T ss_pred ----ChhHHHHHHHHHhhCCCCcEEEEec--C----CHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHH
Confidence 355678899999887 567777544 1 467777888899999986 332211 11233455544
Q ss_pred --HHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 221 --RTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 221 --~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.++.+.+++|||+-|||++..|+.+++..|+ ++|+++-.
T Consensus 247 ~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~ag 290 (404)
T PRK06843 247 DVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAG 290 (404)
T ss_pred HHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeee
Confidence 5555556899999999999999999999864 99999865
No 82
>PLN02535 glycolate oxidase
Probab=99.19 E-value=8.4e-10 Score=103.50 Aligned_cols=227 Identities=14% Similarity=0.082 Sum_probs=148.3
Q ss_pred ccccccccccCCceEEccCCC--C----CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR--M----NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--~----t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.. . .+.+....+.+.|.-.+.+-+.+ .++.. +
T Consensus 62 ~~t~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~-~slEe----------------------v 118 (364)
T PLN02535 62 MSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMAS-CTVEE----------------------V 118 (364)
T ss_pred CceEECCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCccc-CCHHH----------------------H
Confidence 888999999999999999882 1 22334445566676555554321 11110 0
Q ss_pred eecCCCCCCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCccccc-cCCc-c----------------------
Q psy4398 94 FRTCPREKNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSL-TGGM-G---------------------- 147 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~-~~~~-G---------------------- 147 (306)
.. ..+.+...||.- .|.+...+..+++++ ||.+|-+..-+|..-.| +|.. |
T Consensus 119 a~---~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 195 (364)
T PLN02535 119 AS---SCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKG 195 (364)
T ss_pred Hh---cCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCcccc
Confidence 10 113478999975 556777777888875 99999997776642111 1100 0
Q ss_pred cc----c--cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHH
Q psy4398 148 AA----L--LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIR 221 (306)
Q Consensus 148 ~~----l--~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~ 221 (306)
.. . .-++.+.-+-++.+++.++.||.+|-- .+ .+-++.+.++|+|+|.+++....+....+..++.+.
T Consensus 196 ~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV--~~----~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ 269 (364)
T PLN02535 196 SGLEAFASETFDASLSWKDIEWLRSITNLPILIKGV--LT----REDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLE 269 (364)
T ss_pred ccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecC--CC----HHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHH
Confidence 00 0 002222336678888888999999943 22 234788889999999997532211122345678889
Q ss_pred HHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC---------chH---HHHHHHHHhcCCC
Q psy4398 222 TLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK---------LPK---TILYAHCKYKRFE 278 (306)
Q Consensus 222 ~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~---------~~~---~~l~~~~~~~g~~ 278 (306)
++++++ ++|||+.|||++..|+-+++..| |++||+++.... ..+ .+++..|.-.|.+
T Consensus 270 ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l~~el~~~m~l~G~~ 343 (364)
T PLN02535 270 EVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCP 343 (364)
T ss_pred HHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 998877 69999999999999999999876 499999987642 111 2777778888844
No 83
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=99.19 E-value=3.5e-10 Score=101.05 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=112.9
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe-----c
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI-----R 177 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-----r 177 (306)
++-+|+.|. .....++...+..|++.|-++ +...++|+++.++.+.+.+.+-+.+++|. .
T Consensus 74 ~~~v~vgGG-Irs~e~~~~~l~~Ga~~vvig--------------T~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~ 138 (243)
T TIGR01919 74 VVVEELSGG-RRDDSSLRAALTGGRARVNGG--------------TAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHT 138 (243)
T ss_pred CCCEEEcCC-CCCHHHHHHHHHcCCCEEEEC--------------chhhCCHHHHHHHHHHccccEEEEEEEecCCceEE
Confidence 456788654 223444445566799998774 45567999999999988666666777762 1
Q ss_pred c---CCCh--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH----
Q psy4398 178 V---FHNE--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS---- 248 (306)
Q Consensus 178 ~---g~~~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~---- 248 (306)
. ||.. .+..++++.+++.|+..+.++...+++...+| ++++++++++.+++|||++|||+|.+|.+++-+
T Consensus 139 v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~-d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~ 217 (243)
T TIGR01919 139 LGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGP-NELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEG 217 (243)
T ss_pred EECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCc-CHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccC
Confidence 1 4543 24789999999999999999999999999986 999999999999999999999999999998742
Q ss_pred --hhhhhccccCCCC
Q psy4398 249 --LNCAFLRNHYPVE 261 (306)
Q Consensus 249 --~~v~vGrall~~p 261 (306)
.++.+|+|+|.+-
T Consensus 218 Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 218 GVSVAIGGKLLYARF 232 (243)
T ss_pred CeeEEEEhHHHHcCC
Confidence 2569999999876
No 84
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.15 E-value=6.2e-10 Score=99.27 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=108.6
Q ss_pred EEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec----cCC
Q psy4398 105 ILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR----VFH 180 (306)
Q Consensus 105 ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir----~g~ 180 (306)
-+|+.|. .....++.+.+..|++.|-|| +...++|+++.++ ..+.+.+-+.+++|-. -||
T Consensus 75 ~v~vGGG-Irs~e~~~~~l~~Ga~rvvig--------------T~a~~~p~~l~~~-~~~~~~ivvslD~k~g~v~~~gw 138 (241)
T PRK14114 75 HIQIGGG-IRSLDYAEKLRKLGYRRQIVS--------------SKVLEDPSFLKFL-KEIDVEPVFSLDTRGGKVAFKGW 138 (241)
T ss_pred cEEEecC-CCCHHHHHHHHHCCCCEEEEC--------------chhhCCHHHHHHH-HHhCCCEEEEEEccCCEEeeCCC
Confidence 3688553 334455556667799998774 4456789999999 4554444455555422 145
Q ss_pred Ch---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--------
Q psy4398 181 NE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL-------- 249 (306)
Q Consensus 181 ~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~-------- 249 (306)
.. -+..++++.+++.|+..+.++...+++...+| ++++++++++.+++|||++|||+|.+|..++.+.
T Consensus 139 ~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~-d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v 217 (241)
T PRK14114 139 LAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEH-DFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLL 217 (241)
T ss_pred eecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCc-CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcE
Confidence 32 24789999999999999999999999999886 9999999999999999999999999999988774
Q ss_pred -hhhhccccCCCC
Q psy4398 250 -NCAFLRNHYPVE 261 (306)
Q Consensus 250 -~v~vGrall~~p 261 (306)
++.+|+|+|.+-
T Consensus 218 ~gvivg~Al~~g~ 230 (241)
T PRK14114 218 KGVIVGRAFLEGI 230 (241)
T ss_pred EEEEEehHHHCCC
Confidence 359999999876
No 85
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=99.13 E-value=2.7e-10 Score=101.03 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=111.5
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEec-c--
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIR-V-- 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir-~-- 178 (306)
++-+|+.|. .....++.+.++.|++.|-++ +...++|+++.++.+.+.+ .+-+.+++|-. .
T Consensus 73 ~~~i~vgGG-Irs~ed~~~ll~~Ga~~Vvig--------------t~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~ 137 (229)
T PF00977_consen 73 GIPIQVGGG-IRSIEDAERLLDAGADRVVIG--------------TEALEDPELLEELAERYGSQRIVVSLDARDGYKVA 137 (229)
T ss_dssp SSEEEEESS-E-SHHHHHHHHHTT-SEEEES--------------HHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEE
T ss_pred CccEEEeCc-cCcHHHHHHHHHhCCCEEEeC--------------hHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEE
Confidence 366788654 335566667777899998884 5567899999999999965 66677777765 1
Q ss_pred --CCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---
Q psy4398 179 --FHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN--- 250 (306)
Q Consensus 179 --g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~--- 250 (306)
||.. -+..++++.+++.|+..+.+++..+++...+| ++++++++++.+++|+|++|||.+.+|.+.+.+.+
T Consensus 138 ~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~-d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~g 216 (229)
T PF00977_consen 138 TNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGP-DLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDG 216 (229)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECE
T ss_pred ecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCC-CHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcE
Confidence 5543 35899999999999999999999999999986 89999999999999999999999999999999875
Q ss_pred hhhccccCCC
Q psy4398 251 CAFLRNHYPV 260 (306)
Q Consensus 251 v~vGrall~~ 260 (306)
+.+|+|+|.+
T Consensus 217 vivg~al~~g 226 (229)
T PF00977_consen 217 VIVGSALHEG 226 (229)
T ss_dssp EEESHHHHTT
T ss_pred EEEehHhhCC
Confidence 4999999865
No 86
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=99.11 E-value=1.1e-09 Score=97.53 Aligned_cols=139 Identities=16% Similarity=0.131 Sum_probs=110.5
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCC----hHHHHHHHHHH-HhcccccEEEEe-
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST----PDIACNILTTL-ISNLSIPVSCKI- 176 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~----~~~~~eiv~~v-~~~~~~pv~vKi- 176 (306)
.+-+|++|.-. . .++.+.++.|++.|-|+ +.+.++ ++++.++.+.+ .+.+-+.+++|.
T Consensus 76 ~~~v~vGGGIr-~-e~v~~~l~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~ 139 (253)
T TIGR02129 76 PGGLQVGGGIN-D-TNAQEWLDEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT 139 (253)
T ss_pred CCCEEEeCCcC-H-HHHHHHHHcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc
Confidence 35678866543 3 66666778899999995 333343 88999999999 677777788872
Q ss_pred --c---c---CCChH---HHH-HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q psy4398 177 --R---V---FHNEA---DTI-ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYG 244 (306)
Q Consensus 177 --r---~---g~~~~---~~~-~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~ 244 (306)
. + ||... +.. ++++.+++. +..|.++...+++...+| ++++++++++.+++|||++|||.|++|..
T Consensus 140 ~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G~-dlel~~~l~~~~~ipVIASGGv~s~eDi~ 217 (253)
T TIGR02129 140 QDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCKGI-DEELVSKLGEWSPIPITYAGGAKSIDDLD 217 (253)
T ss_pred CCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCccccC-CHHHHHHHHhhCCCCEEEECCCCCHHHHH
Confidence 1 1 55432 356 899999999 999999999999999986 99999999999999999999999999999
Q ss_pred HHHH-----hhhhhccccCC
Q psy4398 245 GVFS-----LNCAFLRNHYP 259 (306)
Q Consensus 245 ~~l~-----~~v~vGrall~ 259 (306)
++.+ .++.+|+++|.
T Consensus 218 ~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 218 LVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHhcCCCCcEEeeehHHH
Confidence 8833 25699999874
No 87
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.09 E-value=1.1e-09 Score=97.31 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=111.0
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec---c-CCC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR---V-FHN 181 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir---~-g~~ 181 (306)
+|++| +...+.++.+.++.|++.|-++ +...++|+++.++.+.+.+.+-+.+++|-. . ||.
T Consensus 79 i~vGG-GIrs~e~v~~~l~~Ga~kvvig--------------t~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~ 143 (234)
T PRK13587 79 IEVGG-GIRTKSQIMDYFAAGINYCIVG--------------TKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWE 143 (234)
T ss_pred EEEcC-CcCCHHHHHHHHHCCCCEEEEC--------------chHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCc
Confidence 77744 3445566666677899998774 455689999999999886655556666532 1 453
Q ss_pred h---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhcc
Q psy4398 182 E---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLR 255 (306)
Q Consensus 182 ~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGr 255 (306)
. -+..++++.+++.|+..+.++...+++...++ ++++++++.+.+++|||+.|||+|.+|+.++++.| +.+|+
T Consensus 144 ~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~-~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~ 222 (234)
T PRK13587 144 EDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGP-NFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGK 222 (234)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCcc-CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhH
Confidence 2 23689999999999999999999999888886 99999999999999999999999999999999865 49999
Q ss_pred ccCC
Q psy4398 256 NHYP 259 (306)
Q Consensus 256 all~ 259 (306)
+++.
T Consensus 223 a~~~ 226 (234)
T PRK13587 223 AAHQ 226 (234)
T ss_pred HHHh
Confidence 9886
No 88
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.09 E-value=3.9e-09 Score=98.47 Aligned_cols=203 Identities=17% Similarity=0.211 Sum_probs=124.8
Q ss_pred ccccccccCCceEEccCCCCCCHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCC
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPRE 100 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (306)
..+..+.++.||+.+||..+|+..+.....+. |.|.+-.-....+......+....... .|.. .....+ .
T Consensus 6 ~~~~~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~~~-----~p~~---~~~f~~-~ 76 (336)
T COG2070 6 RFILLLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRALTD-----KPFV---ANNFGS-A 76 (336)
T ss_pred hhhcccCccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHHHhcC-----Ccch---hccccc-c
Confidence 34567789999999999999999998876554 467332222222111111111111100 0000 000000 0
Q ss_pred CCceEEEecCCCHHHHHHHHHH-Hhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 101 KNKIILQIGTADPERALEAAKK-VEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~-~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
..|+-+++.....+.+.+.+.. ++. +...+...++-|. .++++.+++ .+..+..++.
T Consensus 77 ~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~-------------------~~~i~~~~~-~g~~v~~~v~- 135 (336)
T COG2070 77 PAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPP-------------------AEFVARLKA-AGIKVIHSVI- 135 (336)
T ss_pred cccchhheecccccchHHhhhhHHhcCCCCEEeccCCCCc-------------------HHHHHHHHH-cCCeEEEEeC-
Confidence 0123333333222344444443 343 6666666655322 235666665 5778888887
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCC----CCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHh---h
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPR----HRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSL---N 250 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~----~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~---~ 250 (306)
+.+.++..++.|+|.|++.+....+... .+....++.++++.++ +|||+.|||.|.+++..++.. +
T Consensus 136 ------~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~g 209 (336)
T COG2070 136 ------TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADG 209 (336)
T ss_pred ------CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHH
Confidence 5889999999999999998765433222 2335788999999998 999999999999999999986 5
Q ss_pred hhhccccCCC
Q psy4398 251 CAFLRNHYPV 260 (306)
Q Consensus 251 v~vGrall~~ 260 (306)
|++||.++.=
T Consensus 210 Vq~GT~Fl~t 219 (336)
T COG2070 210 VQMGTRFLAT 219 (336)
T ss_pred HHhhhhhhcc
Confidence 6999998863
No 89
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.04 E-value=2.6e-09 Score=94.78 Aligned_cols=139 Identities=11% Similarity=0.091 Sum_probs=107.4
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHH-HhcccccEEEE----ecc-C
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTL-ISNLSIPVSCK----IRV-F 179 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v-~~~~~~pv~vK----ir~-g 179 (306)
+|+.|. .....++.+.++.|++.|-++ +...++|+++.++.+.+ .+.+-+.+++| +.. |
T Consensus 76 v~vGGG-Irs~e~~~~~l~~Ga~kvvig--------------t~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~g 140 (232)
T PRK13586 76 IQVGGG-IRDIEKAKRLLSLDVNALVFS--------------TIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRG 140 (232)
T ss_pred EEEeCC-cCCHHHHHHHHHCCCCEEEEC--------------chhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccC
Confidence 788553 233444555566799998773 45568999999999998 55555566662 111 4
Q ss_pred CCh--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhc
Q psy4398 180 HNE--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFL 254 (306)
Q Consensus 180 ~~~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vG 254 (306)
|.. .+..++++.+++.|+..+.+++..+++...++ ++++++++++. ..|+|++|||+|.+|..++.+. ++.+|
T Consensus 141 w~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~-d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G~~gvivg 218 (232)
T PRK13586 141 WKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGI-DYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNVGFDYIIVG 218 (232)
T ss_pred CeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCc-CHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEe
Confidence 532 24789999999999999999999999999886 99999999877 5579999999999999998876 45999
Q ss_pred cccCCCC
Q psy4398 255 RNHYPVE 261 (306)
Q Consensus 255 rall~~p 261 (306)
+|+|.+-
T Consensus 219 ~Aly~g~ 225 (232)
T PRK13586 219 MAFYLGK 225 (232)
T ss_pred hhhhcCc
Confidence 9999653
No 90
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.04 E-value=3.1e-09 Score=99.97 Aligned_cols=208 Identities=17% Similarity=0.219 Sum_probs=133.5
Q ss_pred ccccccccccCCceEEccCCCCC----C--HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRMN----T--LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t----~--~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++|||.+.. + ......+.+.|.-..+.-..+. .+.. +
T Consensus 48 ~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~-~~e~----------------------i 104 (356)
T PF01070_consen 48 TSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSA-SLEE----------------------I 104 (356)
T ss_dssp SSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSS-CHHH----------------------H
T ss_pred CCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccC-CHHH----------------------H
Confidence 88999999999999999999421 2 2244446677765555543321 1100 0
Q ss_pred eecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc----CCc--------------------c
Q psy4398 94 FRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT----GGM--------------------G 147 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~----~~~--------------------G 147 (306)
... .+.+...||. -.+.+...+..+++++ ||+++-+++-+|..-.+. .++ |
T Consensus 105 a~~---~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~ 181 (356)
T PF01070_consen 105 AAA---SGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSG 181 (356)
T ss_dssp HHH---CTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TT
T ss_pred Hhh---ccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccc
Confidence 111 1258899985 4577777778888875 999999987544311000 000 0
Q ss_pred -------------c------cc---cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEccc
Q psy4398 148 -------------A------AL---LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205 (306)
Q Consensus 148 -------------~------~l---~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~ 205 (306)
. .+ ..++.+.-+-++.+++.++.||.||=- .+ .+-++.+.+.|+++|.|++-
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv--~~----~~da~~~~~~G~~~i~vs~h 255 (356)
T PF01070_consen 182 MPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV--LS----PEDAKRAVDAGVDGIDVSNH 255 (356)
T ss_dssp TGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE---S----HHHHHHHHHTT-SEEEEESG
T ss_pred cccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec--cc----HHHHHHHHhcCCCEEEecCC
Confidence 0 00 012334335588999999999999966 33 45567788899999999653
Q ss_pred CCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 206 TKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 206 ~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
-..+.-.++...+.+.++++++ ++|||+.|||++..|+-+++..|+ .+||+++.
T Consensus 256 GGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 256 GGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp TGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred CcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 2222333456788889999977 599999999999999998888754 88888764
No 91
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.04 E-value=6e-09 Score=97.59 Aligned_cols=208 Identities=15% Similarity=0.073 Sum_probs=139.0
Q ss_pred ccccccccccCCceEEccCCC------CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR------MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~------~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.- -.+......+.+.|...+++-+.+.. +.. +
T Consensus 54 ~~ttllG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~s-iEe----------------------v 110 (361)
T cd04736 54 ISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMS-IED----------------------V 110 (361)
T ss_pred CceeECCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCC-HHH----------------------H
Confidence 888899999999999999872 22334555567788777777543311 100 0
Q ss_pred eecCCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc----CCc----------------------
Q psy4398 94 FRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT----GGM---------------------- 146 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~----~~~---------------------- 146 (306)
... .+.+...||.-.+.+...+..+++++ ||+++-+..-+|..-.|. .++
T Consensus 111 a~a---~~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~ 187 (361)
T cd04736 111 ARQ---ADGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLL 187 (361)
T ss_pred Hhh---cCCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhh
Confidence 111 12478889877775555666778875 999999976554321100 000
Q ss_pred -------------cc-----------cc--cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEE
Q psy4398 147 -------------GA-----------AL--LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200 (306)
Q Consensus 147 -------------G~-----------~l--~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i 200 (306)
.. .+ ..++.+.-+.++.+++.++.|+.+|=- . ..+-++.+.+.|+|+|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV--~----~~eda~~a~~~G~d~I 261 (361)
T cd04736 188 RFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGI--V----TAEDAKRCIELGADGV 261 (361)
T ss_pred hhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecC--C----CHHHHHHHHHCCcCEE
Confidence 00 00 012233446789999999999999932 2 3456677788999999
Q ss_pred EEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 201 ~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+++....+....+..++.+.++++.+++|||+.|||++..|+-+++..|+ ++||+++.
T Consensus 262 ~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 262 ILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred EECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 986432222222345688899999999999999999999999999998764 99999873
No 92
>PLN02979 glycolate oxidase
Probab=99.02 E-value=1.4e-08 Score=94.76 Aligned_cols=208 Identities=14% Similarity=0.085 Sum_probs=137.5
Q ss_pred ccccccccccCCceEEccCCC------CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR------MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~------~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.. -.+.+....+.+.|.-.+++-..+ .++. .+
T Consensus 59 tst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss-~slE----------------------eI 115 (366)
T PLN02979 59 MTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWAT-SSVE----------------------EV 115 (366)
T ss_pred CceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcC-CCHH----------------------HH
Confidence 889999999999999999882 122345555667776666654222 1110 01
Q ss_pred eecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccc-cC---Ccc-------ccc----------
Q psy4398 94 FRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQFSL-TG---GMG-------AAL---------- 150 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~-~~---~~G-------~~l---------- 150 (306)
... .+.+...|+. ..|.+...+..+++++ ||.++-+..-+|..-.| +| ++- ..+
T Consensus 116 a~a---~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~ 192 (366)
T PLN02979 116 AST---GPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDE 192 (366)
T ss_pred Hhc---cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCc
Confidence 111 1347889986 4566666777788875 99999997766643111 00 000 000
Q ss_pred ------------cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHH
Q psy4398 151 ------------LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIE 218 (306)
Q Consensus 151 ------------~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~ 218 (306)
.-++...=+-++.+|+.++.||.||-= .+ .+-|+.+.++|+|+|.|++....+....|...+
T Consensus 193 ~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV--~~----~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~ 266 (366)
T PLN02979 193 ANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGV--LT----GEDARIAIQAGAAGIIVSNHGARQLDYVPATIS 266 (366)
T ss_pred ccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecC--CC----HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHH
Confidence 001122225578889999999999976 22 566678888999999997653222223345678
Q ss_pred HHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 219 MIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 219 ~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+.++++++ ++|||+.|||++..|+-+++..|+ .+||+++.
T Consensus 267 ~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 267 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 888888876 599999999999999999888754 99998763
No 93
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.01 E-value=6.1e-09 Score=102.55 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=116.7
Q ss_pred HHHHHHHhcCCCEEEEccC---CCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEec---------------
Q psy4398 117 LEAAKKVEHDVAAIDINMG---CPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIR--------------- 177 (306)
Q Consensus 117 ~~aa~~~~~g~d~veln~g---cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir--------------- 177 (306)
..+.+.++.|+|.|-||-. .|.. -|-+.-..+|+++.++.+.+.+. +-+.|++|-.
T Consensus 338 e~~~~~l~~GadkV~i~s~Av~~~~~-----~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~ 412 (538)
T PLN02617 338 EVASEYFRSGADKISIGSDAVYAAEE-----YIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKV 412 (538)
T ss_pred HHHHHHHHcCCCEEEEChHHHhChhh-----hhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccc
Confidence 4455566779999999843 1210 11112345789999999999554 5555665511
Q ss_pred ----------------c-CCC---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC
Q psy4398 178 ----------------V-FHN---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 178 ----------------~-g~~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI 237 (306)
. ||. .-+..++++.+++.|+..|.++...+++...++ ++++++++++.+++|||++||+
T Consensus 413 ~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~-d~~l~~~v~~~~~ipviasGG~ 491 (538)
T PLN02617 413 TNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGF-DIELVKLVSDAVTIPVIASSGA 491 (538)
T ss_pred cccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCc-CHHHHHHHHhhCCCCEEEECCC
Confidence 1 232 235899999999999999999999999998885 9999999999999999999999
Q ss_pred CCHHHHHHHHHh-hh--hhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 238 KEIVDYGGVFSL-NC--AFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 238 ~s~~~~~~~l~~-~v--~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
.+++|+.++++. ++ +++-.++......-.+++++|.+.|+++
T Consensus 492 g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 492 GTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred CCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 999999999974 33 4444455544555568999999999763
No 94
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.99 E-value=1.5e-08 Score=95.57 Aligned_cols=208 Identities=14% Similarity=0.073 Sum_probs=135.2
Q ss_pred ccccccccccCCceEEccCCC------CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR------MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~------~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.. -.+......+.+.|...+.+.+.+. ++.. +
T Consensus 60 ~~t~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~-slEe----------------------i 116 (381)
T PRK11197 60 LETTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVC-PIEE----------------------V 116 (381)
T ss_pred CceEECCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcC-CHHH----------------------H
Confidence 888899999999999999882 1334455556677876666653321 1110 0
Q ss_pred eecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccc-cC---Cccc---------c---------
Q psy4398 94 FRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQFSL-TG---GMGA---------A--------- 149 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~-~~---~~G~---------~--------- 149 (306)
.. ..+.+...||. ..|.+...+..+++++ ||.++-+..-+|..-.+ ++ ++-. .
T Consensus 117 a~---~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~ 193 (381)
T PRK11197 117 AP---AIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAW 193 (381)
T ss_pred Hh---ccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhh
Confidence 10 11347888985 4567777777888875 99999998776632111 00 0000 0
Q ss_pred ----------ccC----------ChHH------------HHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC
Q psy4398 150 ----------LLS----------TPDI------------ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI 197 (306)
Q Consensus 150 ----------l~~----------~~~~------------~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~ 197 (306)
+.+ +.++ .=+-++.+++.++.||.+|== .+ .+-|+.+.+.|+
T Consensus 194 ~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV--~s----~~dA~~a~~~Gv 267 (381)
T PRK11197 194 DVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGI--LD----PEDARDAVRFGA 267 (381)
T ss_pred hhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEec--CC----HHHHHHHHhCCC
Confidence 000 0111 002277888889999999965 22 456677788999
Q ss_pred cEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 198 d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
|+|.|++-...+....+...+.+.++++++ ++|||+.|||++..|+-+++..| +++||+++.
T Consensus 268 d~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 268 DGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred CEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 999996532111111234567788888776 69999999999999999999875 499998864
No 95
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.97 E-value=1.1e-08 Score=91.60 Aligned_cols=144 Identities=8% Similarity=-0.021 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHH-----HHHHHHHhcccccEE--EEeccCCCh
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIAC-----NILTTLISNLSIPVS--CKIRVFHNE 182 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~-----eiv~~v~~~~~~pv~--vKir~g~~~ 182 (306)
-.+.+++.++++.+++++|.||||+.||++.. .|..+.+...... ++++++++.+++|+. +|++. ..
T Consensus 14 ~p~~~~~~~~~~~l~~~ad~iElgip~sdp~a----dG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~--~~ 87 (244)
T PRK13125 14 YPNVESFKEFIIGLVELVDILELGIPPKYPKY----DGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED--YV 87 (244)
T ss_pred CCCHHHHHHHHHHHHhhCCEEEECCCCCCCCC----CCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch--hh
Confidence 35789999999987656999999999998732 3666777777766 899999988888974 67773 33
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC------------------------------------------------CCCCCC-
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK------------------------------------------------AERPRH- 213 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~------------------------------------------------~~~~~~- 213 (306)
.+..++++.+.++|+|++++|+... .++...
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~ 167 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVP 167 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCC
Confidence 4567788888889999998874110 000000
Q ss_pred --CCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 214 --RNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 214 --p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
+.-.+.++++++.. +.||+.-|||++.++++++++.| +.+|++++.
T Consensus 168 ~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 168 LPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred chHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 11245778888887 58999999999999999988774 599999874
No 96
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.96 E-value=1.8e-08 Score=96.12 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=77.9
Q ss_pred CChHHHHHHHHHHHhccc-ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC--------CCCCcHHHHHH
Q psy4398 152 STPDIACNILTTLISNLS-IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP--------RHRNRIEMIRT 222 (306)
Q Consensus 152 ~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--------~~p~~~~~v~~ 222 (306)
.+++.+.++++.+|+..+ +||.+|+..+. +..++++.++..|+|+|++++....... .+.+....+.+
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~---~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH---GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC---CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 467788999999999997 99999999542 3457888888888999999876422111 12223344455
Q ss_pred HHhhC-------CCcEEEecCCCCHHHHHHHHHhh---hhhccccC
Q psy4398 223 LTQHL-------KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHY 258 (306)
Q Consensus 223 i~~~~-------~ipvia~GGI~s~~~~~~~l~~~---v~vGrall 258 (306)
+++.+ ++|||++|||.+..|+.+++..| +++||+++
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l 318 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAAL 318 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHH
Confidence 55433 69999999999999999999875 48888876
No 97
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.95 E-value=2.9e-08 Score=93.13 Aligned_cols=208 Identities=14% Similarity=0.091 Sum_probs=137.0
Q ss_pred ccccccccccCCceEEccCCC------CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR------MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~------~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.. -.+......+.+.|.-.+++-+.+. ++.. +
T Consensus 60 ~~t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~-slEe----------------------v 116 (367)
T PLN02493 60 MTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATS-SVEE----------------------V 116 (367)
T ss_pred CceEECCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccC-CHHH----------------------H
Confidence 788899999999999999882 1223455556677877666653221 1100 1
Q ss_pred eecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccc-cC---Cc------c-ccc----------
Q psy4398 94 FRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQFSL-TG---GM------G-AAL---------- 150 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~-~~---~~------G-~~l---------- 150 (306)
... .+.+...||. ..|.+...+..+++++ ||.++-|..-+|..-.| +| ++ . ..+
T Consensus 117 a~~---~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 193 (367)
T PLN02493 117 AST---GPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDE 193 (367)
T ss_pred Hhc---CCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCc
Confidence 111 1347889986 4566667777788875 99999997766643111 00 00 0 000
Q ss_pred ------------cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHH
Q psy4398 151 ------------LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIE 218 (306)
Q Consensus 151 ------------~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~ 218 (306)
..++.+.=+-++.+|+.++.||.+|-= .+ .+-++.+.++|+|+|.|++....+....|...+
T Consensus 194 ~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV--~~----~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~ 267 (367)
T PLN02493 194 ANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGV--LT----GEDARIAIQAGAAGIIVSNHGARQLDYVPATIS 267 (367)
T ss_pred ccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecC--CC----HHHHHHHHHcCCCEEEECCCCCCCCCCchhHHH
Confidence 001111124467888889999999966 22 566778888999999997643222223345678
Q ss_pred HHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 219 MIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 219 ~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+.++++++ ++|||+.|||++..|+-+++..|+ .+||+++.
T Consensus 268 ~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 268 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred HHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 888888876 599999999999999998888754 99998763
No 98
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.94 E-value=4.1e-08 Score=92.78 Aligned_cols=209 Identities=13% Similarity=0.111 Sum_probs=135.8
Q ss_pred ccccccccccCCceEEccCCC----C--CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR----M--NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~----~--t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.. . .+......+.+.|.-.+++-+.+. ++.. +
T Consensus 75 t~t~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~-slEe----------------------I 131 (383)
T cd03332 75 LSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSS-SIED----------------------V 131 (383)
T ss_pred CceeeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCC-CHHH----------------------H
Confidence 888999999999999999882 1 223345556677877776644321 1100 0
Q ss_pred eecCCCCCCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc-C---Cc---------------------
Q psy4398 94 FRTCPREKNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT-G---GM--------------------- 146 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~-~---~~--------------------- 146 (306)
.... .+.+...||.- .+.+...+..+++++ ||.+|-|..-.|..-.|. | ++
T Consensus 132 a~~~--~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~ 209 (383)
T cd03332 132 AAAA--GDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKK 209 (383)
T ss_pred Hhhc--CCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhc
Confidence 1010 12478899865 467777777788875 999999875444211000 0 00
Q ss_pred ---c---------------cccc---CChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEccc
Q psy4398 147 ---G---------------AALL---STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205 (306)
Q Consensus 147 ---G---------------~~l~---~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~ 205 (306)
+ +... .++.+.-+-++.+++.++.||.+|=- .+ .+-|+.+.+.|+|+|.|++-
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV--~~----~~dA~~a~~~G~d~I~vsnh 283 (383)
T cd03332 210 LAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGI--LH----PDDARRAVEAGVDGVVVSNH 283 (383)
T ss_pred cccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecC--CC----HHHHHHHHHCCCCEEEEcCC
Confidence 0 0000 01222236678888888999999922 22 45566778899999999753
Q ss_pred CCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 206 TKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 206 ~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
...+....+...+.+.++++++ ++|||+.|||++..|+-+++..| +.+||+++.
T Consensus 284 GGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~ 342 (383)
T cd03332 284 GGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAY 342 (383)
T ss_pred CCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 2212223455778889999888 59999999999999999999875 499998873
No 99
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.92 E-value=2.2e-07 Score=81.81 Aligned_cols=203 Identities=16% Similarity=0.146 Sum_probs=129.7
Q ss_pred cccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCC
Q psy4398 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKN 102 (306)
Q Consensus 23 ~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 102 (306)
+|+|.+|+.|+++-.+--.+...+.......|+..+..-.-..+. .....+.++ +.++..+.
T Consensus 2 ~i~~~~~~SRl~~Gtgky~s~~~~~~ai~aSg~~ivTva~rR~~~---~~~~~~~~~---------------~~i~~~~~ 63 (248)
T cd04728 2 TIGGKTFSSRLLLGTGKYPSPAIMKEAIEASGAEIVTVALRRVNI---GDPGGESFL---------------DLLDKSGY 63 (248)
T ss_pred eECCEEeecceEEecCCCCCHHHHHHHHHHhCCCEEEEEEEeccc---CCCCcchHH---------------hhccccCC
Confidence 578999999999988875555556666667888776554221110 000111111 11221223
Q ss_pred ceEEEec-CCCHHHHHHHHHHHhc--CCCEEEEcc-CCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 103 KIILQIG-TADPERALEAAKKVEH--DVAAIDINM-GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 103 p~ivql~-g~~~~~~~~aa~~~~~--g~d~veln~-gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
.+..|-. ..+.++....|+.+.+ |-+-|-|.. +.|. .+..|+..+.+-.+.+.+. ++-+..-+.
T Consensus 64 ~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~----------~Llpd~~~tv~aa~~L~~~-Gf~vlpyc~- 131 (248)
T cd04728 64 TLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDK----------TLLPDPIETLKAAEILVKE-GFTVLPYCT- 131 (248)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCcc----------ccccCHHHHHHHHHHHHHC-CCEEEEEeC-
Confidence 3444433 5688999999998875 667665542 2222 3555555444444443221 444444455
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhcc
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLR 255 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGr 255 (306)
. -..+|+++++.|++.|--.+...... .+..+.++++.+++..++|||+.|||.+++|+.++++.| +.+|+
T Consensus 132 -d----d~~~ar~l~~~G~~~vmPlg~pIGsg-~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 132 -D----DPVLAKRLEDAGCAAVMPLGSPIGSG-QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred -C----CHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 3 36788999999999995544443322 345578999999998899999999999999999999985 49999
Q ss_pred ccCC--CC
Q psy4398 256 NHYP--VE 261 (306)
Q Consensus 256 all~--~p 261 (306)
++.. ||
T Consensus 206 AIt~a~dP 213 (248)
T cd04728 206 AIAKAKDP 213 (248)
T ss_pred HhcCCCCH
Confidence 9875 56
No 100
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.91 E-value=1.3e-07 Score=90.17 Aligned_cols=221 Identities=10% Similarity=0.018 Sum_probs=124.7
Q ss_pred cccCCceEEccCC-CCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCce
Q psy4398 27 INYSNKIILAPMV-RMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKI 104 (306)
Q Consensus 27 l~l~n~i~lAPm~-~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ 104 (306)
+.++.|++.+||. ++++..+.....++| .|.+-+...+++.+....+..... +. .+.|+
T Consensus 10 lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~------------------lt-~~~Pf 70 (418)
T cd04742 10 YGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAA------------------LG-NGEPY 70 (418)
T ss_pred hCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHh------------------cc-CCCCe
Confidence 4579999999999 799999887655654 688888777665543322221111 10 15699
Q ss_pred EEEecCC--CHHHHHHHHHHH-hcCCCEEEEcc-CCCcccccc-CCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 105 ILQIGTA--DPERALEAAKKV-EHDVAAIDINM-GCPKQFSLT-GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 105 ivql~g~--~~~~~~~aa~~~-~~g~d~veln~-gcP~~~~~~-~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
.+||+.+ +++...+..+.+ ++|...|+... .-|.+.... ...|.....+-. + .....|..|++.
T Consensus 71 GVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~--------~--~~~~~ViakVsr~ 140 (418)
T cd04742 71 GVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGR--------V--QIANRIIAKVSRP 140 (418)
T ss_pred EEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCccccccc--------c--cccceEEEecCCh
Confidence 9998863 333334444444 45888888752 111110000 000000000000 0 001235555431
Q ss_pred -------CCChHH-----------HHHHHHHHHHcC-CcEEEEcccCCCCCCCCC----CcHHHHHHHHhhC--------
Q psy4398 179 -------FHNEAD-----------TIALCKRLEACG-IIAIGVHGRTKAERPRHR----NRIEMIRTLTQHL-------- 227 (306)
Q Consensus 179 -------g~~~~~-----------~~~~a~~l~~~G-~d~i~v~~~~~~~~~~~p----~~~~~v~~i~~~~-------- 227 (306)
++-+++ +.+-|+.+++.| +|.|++. .. .+++.+. .-+..+.++++.+
T Consensus 141 evAs~~f~ppp~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~E-AGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~ 218 (418)
T cd04742 141 EVAEAFMSPAPERILKKLLAEGKITEEQAELARRVPVADDITVE-AD-SGGHTDNRPLSVLLPTIIRLRDELAARYGYRR 218 (418)
T ss_pred hhhhhhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-cc-CCCCCCCccHHhHHHHHHHHHHHHhhccccCC
Confidence 111110 345667777777 6999987 32 2222221 1234455555555
Q ss_pred CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc-hHHHHHHHHHhcCCC
Q psy4398 228 KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL-PKTILYAHCKYKRFE 278 (306)
Q Consensus 228 ~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~-~~~~l~~~~~~~g~~ 278 (306)
++|||+.|||.|.+++..++..| +++|+.++.-++. .....++.+.+.+..
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~~L~~a~~~ 273 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKDLLQKAGVQ 273 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHHHHHhCCCC
Confidence 69999999999999999999875 5999999875522 223666666555544
No 101
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.90 E-value=1.4e-08 Score=90.39 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=107.3
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEeccC---
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIRVF--- 179 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~g--- 179 (306)
+=+|++| +...+.++.+.+..|++.|-|+ +...++ +++.++++.+.+ .+-+.+++|-...
T Consensus 79 ~~v~vgG-Gir~~edv~~~l~~Ga~~viig--------------t~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~ 142 (233)
T cd04723 79 LGLWVDG-GIRSLENAQEWLKRGASRVIVG--------------TETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKP 142 (233)
T ss_pred CCEEEec-CcCCHHHHHHHHHcCCCeEEEc--------------ceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccc
Confidence 3367755 3345566666677899998885 334567 899999999865 4445555543210
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccc
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRN 256 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGra 256 (306)
.+..+..++++.+++. ++.+++++....+...++ ++++++++.+.+++||++.|||+|.+|++++++.|+ .+|++
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g~-~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsa 220 (233)
T cd04723 143 TDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQGP-DLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVASA 220 (233)
T ss_pred cCcCCHHHHHHHHHHh-CCeEEEEEcCccccCCCc-CHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehH
Confidence 1234578899999999 999999998888777664 999999999999999999999999999999999754 99999
Q ss_pred cCCCC
Q psy4398 257 HYPVE 261 (306)
Q Consensus 257 ll~~p 261 (306)
++.+-
T Consensus 221 l~~g~ 225 (233)
T cd04723 221 LHDGG 225 (233)
T ss_pred HHcCC
Confidence 98764
No 102
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.84 E-value=8.9e-07 Score=78.09 Aligned_cols=203 Identities=17% Similarity=0.136 Sum_probs=128.1
Q ss_pred ccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCC
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREK 101 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (306)
..|++.+|+.|+++-.+--.+...++......|+..+..-.-..+.. ...+++ .+.++..+
T Consensus 2 l~i~~~~~~SRl~~Gtgky~s~~~~~~ai~asg~~ivTvalrR~~~~----~~~~~~---------------~~~i~~~~ 62 (250)
T PRK00208 2 LTIAGKTFSSRLLLGTGKYPSPQVMQEAIEASGAEIVTVALRRVNLG----QGGDNL---------------LDLLPPLG 62 (250)
T ss_pred cEECCEEeeccceEecCCCCCHHHHHHHHHHhCCCeEEEEEEeecCC----CCcchH---------------HhhccccC
Confidence 56899999999999888744555566666678887765542211110 000111 11122223
Q ss_pred CceEEEec-CCCHHHHHHHHHHHhc--CCCEEEEcc-CCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 102 NKIILQIG-TADPERALEAAKKVEH--DVAAIDINM-GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~-g~~~~~~~~aa~~~~~--g~d~veln~-gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
..+..|-. +.+.++....|+.+.+ +-+-|-|.. +.|. .+..|+..+.+-.+.+.+. ++-+..-+.
T Consensus 63 ~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~----------~llpd~~~tv~aa~~L~~~-Gf~vlpyc~ 131 (250)
T PRK00208 63 VTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDK----------TLLPDPIETLKAAEILVKE-GFVVLPYCT 131 (250)
T ss_pred CEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCC----------CCCcCHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 33444433 5788999999998876 556655532 2222 2334444433333333211 444443455
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFL 254 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vG 254 (306)
. -..+|+++++.|++.|--.+...... .+..+.+.++.+++..++|||+.|||.+++|+.++++.| +.+|
T Consensus 132 --~----d~~~ak~l~~~G~~~vmPlg~pIGsg-~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 132 --D----DPVLAKRLEEAGCAAVMPLGAPIGSG-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred --C----CHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3 36788999999999995434433322 344567889999998899999999999999999999985 4999
Q ss_pred cccCC--CC
Q psy4398 255 RNHYP--VE 261 (306)
Q Consensus 255 rall~--~p 261 (306)
+++.. ||
T Consensus 205 SAItka~dP 213 (250)
T PRK00208 205 TAIAVAGDP 213 (250)
T ss_pred hHhhCCCCH
Confidence 99875 45
No 103
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.83 E-value=3.2e-07 Score=90.00 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHH
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~ 188 (306)
+..++++..+...+++|+|.|+|+.... +.....+.++.+++.. +.+|.++-- . +.+-
T Consensus 237 g~~~~~~~~~~~l~~ag~d~i~id~a~G---------------~s~~~~~~i~~ik~~~~~~~v~aG~V--~----t~~~ 295 (495)
T PTZ00314 237 STRPEDIERAAALIEAGVDVLVVDSSQG---------------NSIYQIDMIKKLKSNYPHVDIIAGNV--V----TADQ 295 (495)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEecCCC---------------CchHHHHHHHHHHhhCCCceEEECCc--C----CHHH
Confidence 4456666666666677999999987532 2233467888888875 566666322 2 3556
Q ss_pred HHHHHHcCCcEEEEc--cc----CCCCCCCCCCcHHHH---HHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccc
Q psy4398 189 CKRLEACGIIAIGVH--GR----TKAERPRHRNRIEMI---RTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRN 256 (306)
Q Consensus 189 a~~l~~~G~d~i~v~--~~----~~~~~~~~p~~~~~v---~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGra 256 (306)
++.+.++|+|+|.+. +. ++.....+.+.+..+ .++.+..++|||+.|||.+..|+.+++..|+ ++|++
T Consensus 296 a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 296 AKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSL 375 (495)
T ss_pred HHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECch
Confidence 677788999999863 11 111111222344444 4444556899999999999999999998864 99998
Q ss_pred cC
Q psy4398 257 HY 258 (306)
Q Consensus 257 ll 258 (306)
+.
T Consensus 376 ~a 377 (495)
T PTZ00314 376 LA 377 (495)
T ss_pred hc
Confidence 64
No 104
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.82 E-value=1.5e-07 Score=87.76 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=121.0
Q ss_pred cccccCCceEEccCCCCCCHHHHHH-HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCc
Q psy4398 25 ANINYSNKIILAPMVRMNTLPFRLL-ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNK 103 (306)
Q Consensus 25 ~~l~l~n~i~lAPm~~~t~~~~r~~-~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p 103 (306)
.++.|+-||+-|||-.+|+..+... ++.+|.|.+--.+...+.... .+.....+ .+. .. -++....
T Consensus 32 ~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~~-v~~vK~~~-----~~a-----~~--d~~~~l~ 98 (352)
T PF00478_consen 32 RNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAEE-VKKVKRYY-----PNA-----SK--DEKGRLL 98 (352)
T ss_dssp TSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHHH-HHHHHTHH-----TTH-----HB--HTTSCBC
T ss_pred CCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHHH-Hhhhcccc-----ccc-----cc--cccccce
Confidence 8899999999999999999998864 555667887776653322211 11100000 000 00 0112234
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCCCh
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFHNE 182 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~ 182 (306)
+.+.+ +...+++..+...+++|+|.|-|....- +.+.+.+.++.+|+..+ +||++.-= -
T Consensus 99 V~aav-g~~~~~~er~~~L~~agvD~ivID~a~g---------------~s~~~~~~ik~ik~~~~~~~viaGNV--~-- 158 (352)
T PF00478_consen 99 VAAAV-GTRDDDFERAEALVEAGVDVIVIDSAHG---------------HSEHVIDMIKKIKKKFPDVPVIAGNV--V-- 158 (352)
T ss_dssp EEEEE-ESSTCHHHHHHHHHHTT-SEEEEE-SST---------------TSHHHHHHHHHHHHHSTTSEEEEEEE-----
T ss_pred EEEEe-cCCHHHHHHHHHHHHcCCCEEEccccCc---------------cHHHHHHHHHHHHHhCCCceEEeccc--C--
Confidence 55555 4444567777777778999998864431 24556678889988875 77776543 1
Q ss_pred HHHHHHHHHHHHcCCcEEEEccc------CCCCCCCCCCcHHHHH---HHHhhCCCcEEEecCCCCHHHHHHHHHhhh--
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGR------TKAERPRHRNRIEMIR---TLTQHLKIPVIANGGSKEIVDYGGVFSLNC-- 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~------~~~~~~~~p~~~~~v~---~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-- 251 (306)
+.+-++.|.++|+|+|.+--. |+...-.+-+.+..+. +.++..++|||+=|||++.-|+-+++..|+
T Consensus 159 --T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~ 236 (352)
T PF00478_consen 159 --TYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADA 236 (352)
T ss_dssp --SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SE
T ss_pred --CHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccc
Confidence 356677788999999997311 1111111222444444 444455899999999999999999998865
Q ss_pred -hhcccc
Q psy4398 252 -AFLRNH 257 (306)
Q Consensus 252 -~vGral 257 (306)
|+|+.|
T Consensus 237 VMlG~ll 243 (352)
T PF00478_consen 237 VMLGSLL 243 (352)
T ss_dssp EEESTTT
T ss_pred eeechhh
Confidence 888876
No 105
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.82 E-value=3.6e-07 Score=84.82 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=117.0
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEec
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIR 177 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir 177 (306)
...|+..|+.+.+++++.+.++.+. +||+.|.+|+|. +++...+.++++++.++ .++.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD~n 185 (316)
T cd03319 122 RPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVDAN 185 (316)
T ss_pred CCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEeCC
Confidence 3457788888889998888777664 599999999753 23445677888888774 77888888
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AF 253 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~v 253 (306)
.+|+.+++.++++.+++.|+++| +++.. +.+++.++++++.+++||++.+.+.+.++++++++.+. ++
T Consensus 186 ~~~~~~~A~~~~~~l~~~~l~~i-------EeP~~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~ 257 (316)
T cd03319 186 QGWTPEEAVELLRELAELGVELI-------EQPVP-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINI 257 (316)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEE-------ECCCC-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEE
Confidence 88999999999999999999888 33333 45889999999999999999999999999999988532 22
Q ss_pred ccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 254 LRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 254 Grall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
--... +-...-+.+.++.+++|++.
T Consensus 258 ~~~~~-GGi~~~~~~~~~a~~~gi~~ 282 (316)
T cd03319 258 KLMKT-GGLTEALRIADLARAAGLKV 282 (316)
T ss_pred ecccc-CCHHHHHHHHHHHHHcCCCE
Confidence 11111 11112237778889999883
No 106
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.80 E-value=1.5e-08 Score=90.52 Aligned_cols=88 Identities=15% Similarity=0.241 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
.+..++++.+++.|++.|++++.+..+. .++.++++++++++.+++||+++|||+|.++++++++.+ +++||+++.
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~-~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSE-GRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccc-cCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 3688999999999999999999887543 345699999999999999999999999999999999864 599999999
Q ss_pred CCCchHHHHHHH
Q psy4398 260 VEKLPKTILYAH 271 (306)
Q Consensus 260 ~p~~~~~~l~~~ 271 (306)
||.+.....+.|
T Consensus 106 ~p~~~~~i~~~~ 117 (243)
T cd04731 106 NPELIREIAKRF 117 (243)
T ss_pred ChHHHHHHHHHc
Confidence 996655444443
No 107
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.80 E-value=6.3e-07 Score=85.96 Aligned_cols=224 Identities=10% Similarity=0.027 Sum_probs=122.8
Q ss_pred cccCCceEEccCC-CCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCce
Q psy4398 27 INYSNKIILAPMV-RMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKI 104 (306)
Q Consensus 27 l~l~n~i~lAPm~-~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ 104 (306)
+.++.|++.+||. ++|+..+.....++| .|.+-+...+++.+.......... +. .+.|+
T Consensus 15 lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~------------------~~-~~p~f 75 (444)
T TIGR02814 15 YGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQA------------------LP-GGPAY 75 (444)
T ss_pred hCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHh------------------cC-CCCce
Confidence 5679999999999 799999887655654 588888777665544332221111 11 12239
Q ss_pred EEEecCCC--HHHHHHHHHHH-hcCCCEEEEccC---CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 105 ILQIGTAD--PERALEAAKKV-EHDVAAIDINMG---CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 105 ivql~g~~--~~~~~~aa~~~-~~g~d~veln~g---cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
.+||+.+. ++...+..+.+ +.+...|+.... .|.- ..-...|.....+-+ + .....|..|++.
T Consensus 76 GVNL~~~~~~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~~G~~~~~~g~--------~--~~~~~ViakVsr 144 (444)
T TIGR02814 76 GVNLIHSPSDPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRAKGLHRDADGR--------V--VIRNRLIAKVSR 144 (444)
T ss_pred EEEecccCCCcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhhcccccccccc--------c--cccceEEEecCC
Confidence 99988653 22122333433 458888888533 2221 010000100000000 0 011244555431
Q ss_pred --------CCChHH-----------HHHHHHHHHHcC-CcEEEEcccCCCCCCCCC-CcHHHHHHH---HhhC-------
Q psy4398 179 --------FHNEAD-----------TIALCKRLEACG-IIAIGVHGRTKAERPRHR-NRIEMIRTL---TQHL------- 227 (306)
Q Consensus 179 --------g~~~~~-----------~~~~a~~l~~~G-~d~i~v~~~~~~~~~~~p-~~~~~v~~i---~~~~------- 227 (306)
++-++. +.+-|+.+++.| +|.|++. .. .+++.+. ..+.++..| ++.+
T Consensus 145 ~~vAs~f~~p~p~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~E-AGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~ 222 (444)
T TIGR02814 145 PEVAEAFMSPAPAHILQKLLAEGRITREEAELARRVPVADDICVE-AD-SGGHTDNRPLVVLLPAIIRLRDTLMRRYGYR 222 (444)
T ss_pred HHHHHHhcCCCcHHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-cc-CCCCCCCCcHHHHHHHHHHHHHHHhhcccCC
Confidence 111111 234556677777 5989875 22 2223221 133444444 4555
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc-hHHHHHHHHHhcCCCCCcc
Q psy4398 228 -KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL-PKTILYAHCKYKRFEVPKY 282 (306)
Q Consensus 228 -~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~-~~~~l~~~~~~~g~~~~~~ 282 (306)
++|||+.|||.|++++..++..| |++|+.++.-++. .....++.+.+.+..-|.+
T Consensus 223 ~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Esgas~~~K~~L~~a~~~DT~~ 282 (444)
T TIGR02814 223 KPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEAGTSDNVKKLLAKADVQDTAY 282 (444)
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccccCCHHHHHHHHhCCCcCeEE
Confidence 68999999999999999999875 5999999875522 2235666665555443333
No 108
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.78 E-value=9.7e-07 Score=81.21 Aligned_cols=195 Identities=10% Similarity=0.026 Sum_probs=129.6
Q ss_pred cccccc-----ccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceee
Q psy4398 20 ANANQA-----NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94 (306)
Q Consensus 20 ~~~~~~-----~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 94 (306)
++.+++ .+.+.-||+.|.|-.+++..+...-.+.|.=.++=++.+.+......+..
T Consensus 30 l~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~~e~~~~~v~~~------------------- 90 (343)
T TIGR01305 30 LERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSVDEWKAFATNS------------------- 90 (343)
T ss_pred eeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHhh-------------------
Confidence 445554 45788999999999999999988655666444444544444432221110
Q ss_pred ecCCCCCCceEEEecCCCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 95 RTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 95 ~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.++....+.+.+ |..++++..+...+++ +.|.|-|..++- +.+.+.+.++.+|+.+.-+.
T Consensus 91 --~~~~~~~~~vsv-G~~~~d~er~~~L~~a~~~~d~iviD~AhG---------------hs~~~i~~ik~ir~~~p~~~ 152 (343)
T TIGR01305 91 --SPDCLQNVAVSS-GSSDNDLEKMTSILEAVPQLKFICLDVANG---------------YSEHFVEFVKLVREAFPEHT 152 (343)
T ss_pred --cccccceEEEEe-ccCHHHHHHHHHHHhcCCCCCEEEEECCCC---------------cHHHHHHHHHHHHhhCCCCe
Confidence 001122355555 6777889888888876 699999975542 35677888999999875444
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc------ccCCCCCCCCCCcHHHHHHHHhhC---CCcEEEecCCCCHHHH
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH------GRTKAERPRHRNRIEMIRTLTQHL---KIPVIANGGSKEIVDY 243 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~------~~~~~~~~~~p~~~~~v~~i~~~~---~ipvia~GGI~s~~~~ 243 (306)
.+|=.+ . +.+-++.|.++|+|+|.|. +.++.-.-.+-+.+..+.+++++. ++|||+=|||+..-|.
T Consensus 153 viaGNV-~----T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI 227 (343)
T TIGR01305 153 IMAGNV-V----TGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDV 227 (343)
T ss_pred EEEecc-c----CHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHH
Confidence 444321 1 3456667788999999875 222222222323677777777665 6899999999999999
Q ss_pred HHHHHhhh---hhccc
Q psy4398 244 GGVFSLNC---AFLRN 256 (306)
Q Consensus 244 ~~~l~~~v---~vGra 256 (306)
-+++..|+ ++|..
T Consensus 228 ~KALA~GAd~VMlG~l 243 (343)
T TIGR01305 228 AKAFGAGADFVMLGGM 243 (343)
T ss_pred HHHHHcCCCEEEECHh
Confidence 99998764 88843
No 109
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.76 E-value=1.8e-07 Score=82.57 Aligned_cols=131 Identities=10% Similarity=0.053 Sum_probs=94.6
Q ss_pred EEecCC--CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec----cC
Q psy4398 106 LQIGTA--DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR----VF 179 (306)
Q Consensus 106 vql~g~--~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir----~g 179 (306)
+|++|. +.++..++...+ .+++.|-++ +...++|+++.++. .-+.+++|-. .|
T Consensus 80 v~vgGGirs~e~~~~~~~~l-~~a~rvvig--------------T~a~~~p~~l~~~~------~vvslD~~~g~v~~~g 138 (221)
T TIGR00734 80 LIADCGVRSPEDLETLPFTL-EFASRVVVA--------------TETLDITELLRECY------TVVSLDFKEKFLDASG 138 (221)
T ss_pred EEEcCccCCHHHHHHHHhhh-ccceEEeec--------------ChhhCCHHHHHHhh------hEEEEEeECCcccccc
Confidence 788663 444433332211 257887663 44457888887764 1345555521 14
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccc
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRN 256 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGra 256 (306)
|. +...++.+.+.+.|+ .+.++...+++...++ ++++++++++.+++|||++|||+|++|++++.+.| +.+|++
T Consensus 139 ~~-~~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G~-d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsa 215 (221)
T TIGR00734 139 LF-ESLEEVRDFLNSFDY-GLIVLDIHSVGTMKGP-NLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLVATA 215 (221)
T ss_pred cc-ccHHHHHHHHHhcCC-EEEEEECCccccCCCC-CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHH
Confidence 43 456778888888998 7888888888777775 99999999999999999999999999999988764 599999
Q ss_pred cCCC
Q psy4398 257 HYPV 260 (306)
Q Consensus 257 ll~~ 260 (306)
++.+
T Consensus 216 l~~g 219 (221)
T TIGR00734 216 VHKG 219 (221)
T ss_pred hhCC
Confidence 9865
No 110
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.76 E-value=8.6e-08 Score=81.13 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~ 195 (306)
+.++-..++.|+|.|=|.+.- -.||+.+.++++.+++.. ..++.-++ +.+-+..+.++
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~--------------R~Rp~~l~~li~~i~~~~-~l~MADis-------t~ee~~~A~~~ 111 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATD--------------RPRPETLEELIREIKEKY-QLVMADIS-------TLEEAINAAEL 111 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SS--------------SS-SS-HHHHHHHHHHCT-SEEEEE-S-------SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEecCC--------------CCCCcCHHHHHHHHHHhC-cEEeeecC-------CHHHHHHHHHc
Confidence 455666677899999996432 246678899999999987 88888888 46667778899
Q ss_pred CCcEEEE--cccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 196 GIIAIGV--HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 196 G~d~i~v--~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
|+|.|.- +|.+...... .+++++++++++. ++|||+-|+|.|++++.++++.|+ .+|+|+=
T Consensus 112 G~D~I~TTLsGYT~~t~~~-~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAIT 177 (192)
T PF04131_consen 112 GFDIIGTTLSGYTPYTKGD-GPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAIT 177 (192)
T ss_dssp T-SEEE-TTTTSSTTSTTS-SHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH
T ss_pred CCCEEEcccccCCCCCCCC-CCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccC
Confidence 9999974 4555544443 4599999999987 899999999999999999999875 8999865
No 111
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.75 E-value=1.9e-07 Score=82.34 Aligned_cols=126 Identities=10% Similarity=0.087 Sum_probs=86.1
Q ss_pred HhcCCCEEEEccCCCccccccCCccccccCCh--HHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEE
Q psy4398 123 VEHDVAAIDINMGCPKQFSLTGGMGAALLSTP--DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200 (306)
Q Consensus 123 ~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~--~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i 200 (306)
.+.|+|.|-+...- ...| +.+.++++.+++..++++.+.+. + .+.++.+.+.|+|++
T Consensus 85 ~~aGad~I~~d~~~--------------~~~p~~~~~~~~i~~~~~~~~i~vi~~v~---t----~ee~~~a~~~G~d~i 143 (221)
T PRK01130 85 AAAGADIIALDATL--------------RPRPDGETLAELVKRIKEYPGQLLMADCS---T----LEEGLAAQKLGFDFI 143 (221)
T ss_pred HHcCCCEEEEeCCC--------------CCCCCCCCHHHHHHHHHhCCCCeEEEeCC---C----HHHHHHHHHcCCCEE
Confidence 34699988885321 0112 45567888887644677776655 2 233567889999999
Q ss_pred EEccc--CCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCchHHHHHH
Q psy4398 201 GVHGR--TKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPKTILYA 270 (306)
Q Consensus 201 ~v~~~--~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~~~l~~ 270 (306)
.++.+ +.......+.++++++++++.+++||++.|||+++++++++++.| +++|++++ +|..+...+.+
T Consensus 144 ~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~-~~~~~~~~~~~ 217 (221)
T PRK01130 144 GTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT-RPEEITKWFVD 217 (221)
T ss_pred EcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc-CCHHHHHHHHH
Confidence 87532 221112234478999999999999999999999999999999874 59999976 45444443333
No 112
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.73 E-value=1.3e-06 Score=80.47 Aligned_cols=189 Identities=9% Similarity=0.019 Sum_probs=124.2
Q ss_pred ccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceE
Q psy4398 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKII 105 (306)
Q Consensus 26 ~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i 105 (306)
...+.-||+.|+|-.+++..+...-.+.|.=.++=++.+.+......+... ++....+.
T Consensus 42 ~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~~e~~~~fv~~~~---------------------~~~~~~~~ 100 (346)
T PRK05096 42 QSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHKHYSVEEWAAFVNNSS---------------------ADVLKHVM 100 (346)
T ss_pred ccccCCceEecCCCccccHHHHHHHHHCCCeEEEecCCCHHHHHHHHHhcc---------------------ccccceEE
Confidence 344558999999999999998886556664444445454443322111100 01112455
Q ss_pred EEecCCCHHHHHHHHHHHh--cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCCh
Q psy4398 106 LQIGTADPERALEAAKKVE--HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNE 182 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~--~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~ 182 (306)
+.+ |..++++..+.+.++ +|+|.|-|..++- +.+.+.++++.+|+.. +.+|++.-=
T Consensus 101 vav-G~~~~d~er~~~L~~~~~g~D~iviD~AhG---------------hs~~~i~~ik~ik~~~P~~~vIaGNV----- 159 (346)
T PRK05096 101 VST-GTSDADFEKTKQILALSPALNFICIDVANG---------------YSEHFVQFVAKAREAWPDKTICAGNV----- 159 (346)
T ss_pred EEe-cCCHHHHHHHHHHHhcCCCCCEEEEECCCC---------------cHHHHHHHHHHHHHhCCCCcEEEecc-----
Confidence 555 667788998888887 4999999975542 3567788999999876 455554422
Q ss_pred HHHHHHHHHHHHcCCcEEEEc------ccCCCCCCCCCCcHHHHHHHH---hhCCCcEEEecCCCCHHHHHHHHHhhh--
Q psy4398 183 ADTIALCKRLEACGIIAIGVH------GRTKAERPRHRNRIEMIRTLT---QHLKIPVIANGGSKEIVDYGGVFSLNC-- 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~------~~~~~~~~~~p~~~~~v~~i~---~~~~ipvia~GGI~s~~~~~~~l~~~v-- 251 (306)
.+.+.++.|.++|+|++-|- +.|+.-.-.+-+.+..+.+++ +..++|||+-|||.+.-|+-+++.+|+
T Consensus 160 -~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~ 238 (346)
T PRK05096 160 -VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADF 238 (346)
T ss_pred -cCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCE
Confidence 13567788899999999752 122222222323555554444 445899999999999999999998764
Q ss_pred -hhcccc
Q psy4398 252 -AFLRNH 257 (306)
Q Consensus 252 -~vGral 257 (306)
|+|+.|
T Consensus 239 VMlGsll 245 (346)
T PRK05096 239 VMLGGML 245 (346)
T ss_pred EEeChhh
Confidence 888765
No 113
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.71 E-value=2.2e-07 Score=81.78 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=86.3
Q ss_pred HHHHHHhcCCCEEEEccCCCccccccCCccccccCCh--HHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc
Q psy4398 118 EAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP--DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195 (306)
Q Consensus 118 ~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~--~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~ 195 (306)
++....+.|+|.|.++...- .+| +.+.++++++++..++++.+.+. + .+.+..+.+.
T Consensus 84 ~~~~a~~aGad~I~~~~~~~--------------~~p~~~~~~~~i~~~~~~g~~~iiv~v~---t----~~ea~~a~~~ 142 (219)
T cd04729 84 EVDALAAAGADIIALDATDR--------------PRPDGETLAELIKRIHEEYNCLLMADIS---T----LEEALNAAKL 142 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCC--------------CCCCCcCHHHHHHHHHHHhCCeEEEECC---C----HHHHHHHHHc
Confidence 33333456999999975431 112 25667888887654678887665 2 2345777889
Q ss_pred CCcEEEEc--ccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 196 GIIAIGVH--GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 196 G~d~i~v~--~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
|+|++.++ +++.........++++++++++.+++||+++|||.+.++++++++.| +++|++++.
T Consensus 143 G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 143 GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 99999763 43332222233478999999999999999999999999999999874 599999875
No 114
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.69 E-value=4.5e-08 Score=88.10 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
.+..++++.+++.|++.+++++++..+... +.+++.++++++.+++||+++|||+|.++++++++.+ +++|++++.
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~-~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGR-DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccC-cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 368899999999999999999998765554 5699999999999999999999999999999999875 499999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
+|.+.+.
T Consensus 109 ~p~~~~e 115 (253)
T PRK02083 109 NPELISE 115 (253)
T ss_pred CcHHHHH
Confidence 9954433
No 115
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.65 E-value=7.3e-08 Score=86.80 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+++.|++.+++++....+. ....++++++++++.+++||++.|||+|.+++++++..++ .+||+++.
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~-~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE-GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc-cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 3688999999999999999999876643 3346999999999999999999999999999999999764 99999999
Q ss_pred CCCchHHHHHHH
Q psy4398 260 VEKLPKTILYAH 271 (306)
Q Consensus 260 ~p~~~~~~l~~~ 271 (306)
||.+.+...+.|
T Consensus 109 ~p~~~~~~~~~~ 120 (254)
T TIGR00735 109 NPELIYELADRF 120 (254)
T ss_pred ChHHHHHHHHHc
Confidence 996554433333
No 116
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.64 E-value=8.2e-07 Score=78.15 Aligned_cols=122 Identities=14% Similarity=0.228 Sum_probs=89.6
Q ss_pred HHHHHHHhcCCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe---ccCCChHHHHHHHHH
Q psy4398 117 LEAAKKVEHDVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI---RVFHNEADTIALCKR 191 (306)
Q Consensus 117 ~~aa~~~~~g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi---r~g~~~~~~~~~a~~ 191 (306)
.++...+++|++.||+ |.++++. .+.+.+.+-++++++.+ .|+.+|+ ....+.++....++.
T Consensus 78 ~e~~~Ai~~GA~EiD~Vin~~~~~~------------g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~ 144 (221)
T PRK00507 78 FEAKDAIANGADEIDMVINIGALKS------------GDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEI 144 (221)
T ss_pred HHHHHHHHcCCceEeeeccHHHhcC------------CCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHH
Confidence 3444445679998886 5555542 34667777777777765 4778888 544566778999999
Q ss_pred HHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 192 LEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
+.++|+|+|-.+... ..+....+.++.+++.+ +++|.++|||+|.+++.+++++|+ -+|+
T Consensus 145 ~~~agadfIKTsTG~----~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGt 207 (221)
T PRK00507 145 AKEAGADFVKTSTGF----STGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGT 207 (221)
T ss_pred HHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEcc
Confidence 999999977653221 12335778888888888 599999999999999999999877 5555
No 117
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.63 E-value=1e-06 Score=78.98 Aligned_cols=198 Identities=15% Similarity=0.128 Sum_probs=125.5
Q ss_pred CCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecCCCHHHHHH
Q psy4398 40 RMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALE 118 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g~~~~~~~~ 118 (306)
++++.....++.++|+ +..+-|-+.++.+..+.-. ..++ +..-+.+.+. -+.|++.=+ ....+.+
T Consensus 14 ~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~---R~~~-----~~~I~~Ik~~---V~iPVIGi~---K~~~~~E 79 (283)
T cd04727 14 DVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVA---RMAD-----PKMIKEIMDA---VSIPVMAKV---RIGHFVE 79 (283)
T ss_pred EeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCee---ecCC-----HHHHHHHHHh---CCCCeEEee---ehhHHHH
Confidence 5778888888888886 6666665544433221100 0011 0000112222 245655332 1222777
Q ss_pred HHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 119 AAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 119 aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
+-...+.|+|.|+ |.. -.+| +.+++..+|+..+.|+..-++ +.+-+....+.|+|
T Consensus 80 a~~L~eaGvDiID----aT~------------r~rP--~~~~~~~iK~~~~~l~MAD~s-------tleEal~a~~~Gad 134 (283)
T cd04727 80 AQILEALGVDMID----ESE------------VLTP--ADEEHHIDKHKFKVPFVCGAR-------NLGEALRRISEGAA 134 (283)
T ss_pred HHHHHHcCCCEEe----ccC------------CCCc--HHHHHHHHHHHcCCcEEccCC-------CHHHHHHHHHCCCC
Confidence 7776777999996 211 1233 578889998888999999998 45566677889999
Q ss_pred EEEEcc--cCCC------------------CCC----------CCCCcHHHHHHHHhhCCCcEE--EecCCCCHHHHHHH
Q psy4398 199 AIGVHG--RTKA------------------ERP----------RHRNRIEMIRTLTQHLKIPVI--ANGGSKEIVDYGGV 246 (306)
Q Consensus 199 ~i~v~~--~~~~------------------~~~----------~~p~~~~~v~~i~~~~~ipvi--a~GGI~s~~~~~~~ 246 (306)
.|--+. .|.. ..| ...++|++++++++.+++||| +.|||.+++++..+
T Consensus 135 ~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v 214 (283)
T cd04727 135 MIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALM 214 (283)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHH
Confidence 997543 3332 111 123589999999999999997 99999999999999
Q ss_pred HHhh---hhhccccCC--CCCchHHHHHHHHHhcC
Q psy4398 247 FSLN---CAFLRNHYP--VEKLPKTILYAHCKYKR 276 (306)
Q Consensus 247 l~~~---v~vGrall~--~p~~~~~~l~~~~~~~g 276 (306)
++.| +.+|++++. ||...-..+.+.+.+.+
T Consensus 215 ~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~~ 249 (283)
T cd04727 215 MQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYD 249 (283)
T ss_pred HHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhcC
Confidence 9975 499999985 45222224444455433
No 118
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=98.58 E-value=2.7e-06 Score=80.19 Aligned_cols=158 Identities=14% Similarity=0.150 Sum_probs=117.1
Q ss_pred CCceEEEecCC--CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEE
Q psy4398 101 KNKIILQIGTA--DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCK 175 (306)
Q Consensus 101 ~~p~ivql~g~--~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vK 175 (306)
..|+..++... +++++.+.++.+. +||+.+.|+++..... .++++...++++++|+.+ +.++.+.
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~----------~~~~~~d~~~v~~ir~~~g~~~~l~vD 195 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG----------GEDLREDLARVRAVREAVGPDVDLMVD 195 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc----------hHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 34566666555 5899988888775 5999999998753211 167888899999999988 4678888
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhcc
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLR 255 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGr 255 (306)
...+|+.+++.++++.+++.|++++. ++. .+.+++..+.+++.+++||++...+.++++++++++.+. ..
T Consensus 196 aN~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~--~d 265 (357)
T cd03316 196 ANGRWDLAEAIRLARALEEYDLFWFE-------EPV-PPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGA--VD 265 (357)
T ss_pred CCCCCCHHHHHHHHHHhCccCCCeEc-------CCC-CccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCC--CC
Confidence 77789999999999999999887764 222 234788999999999999999999999999999998532 00
Q ss_pred ccCCCC-----CchHHHHHHHHHhcCCC
Q psy4398 256 NHYPVE-----KLPKTILYAHCKYKRFE 278 (306)
Q Consensus 256 all~~p-----~~~~~~l~~~~~~~g~~ 278 (306)
.+--++ ...-+.+.++.+++|++
T Consensus 266 ~v~~k~~~~GGi~~~~~i~~~a~~~g~~ 293 (357)
T cd03316 266 IIQPDVTKVGGITEAKKIAALAEAHGVR 293 (357)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCe
Confidence 111122 11223677778888887
No 119
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.53 E-value=2.9e-06 Score=76.25 Aligned_cols=131 Identities=25% Similarity=0.311 Sum_probs=92.4
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
|+++++ |+-+|.--=-.|... |+ .-|-+-+++|+. |+++++.+++||+-|++.|. ..-|+.|++.|+|
T Consensus 23 a~iae~aga~avm~le~~p~d~-r~-~ggv~R~~~p~~----I~~I~~~V~iPVig~~kigh-----~~Ea~~L~~~GvD 91 (287)
T TIGR00343 23 AKIAEEAGAVAVMALERVPADI-RA-SGGVARMSDPKM----IKEIMDAVSIPVMAKVRIGH-----FVEAQILEALGVD 91 (287)
T ss_pred HHHHHHcCceEEEeeccCchhh-Hh-cCCeeecCCHHH----HHHHHHhCCCCEEEEeeccH-----HHHHHHHHHcCCC
Confidence 456664 877776533456543 22 234566778876 45556777999999999543 5667788888888
Q ss_pred EEEEcccC-----------------------------------------CCCCCCC------------------------
Q psy4398 199 AIGVHGRT-----------------------------------------KAERPRH------------------------ 213 (306)
Q Consensus 199 ~i~v~~~~-----------------------------------------~~~~~~~------------------------ 213 (306)
.|.-+.+. ....|.+
T Consensus 92 iIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~ 171 (287)
T TIGR00343 92 YIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLE 171 (287)
T ss_pred EEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccc
Confidence 88643321 0001111
Q ss_pred -----------CCcHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhh---hhhccccCC--CC
Q psy4398 214 -----------RNRIEMIRTLTQHLKIPVI--ANGGSKEIVDYGGVFSLN---CAFLRNHYP--VE 261 (306)
Q Consensus 214 -----------p~~~~~v~~i~~~~~ipvi--a~GGI~s~~~~~~~l~~~---v~vGrall~--~p 261 (306)
...+++++++++..++||+ +.|||.|++++..+++.| +.+|++++. ||
T Consensus 172 ~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP 237 (287)
T TIGR00343 172 EEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNP 237 (287)
T ss_pred hhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCH
Confidence 2478899999999899998 999999999999999975 599999985 55
No 120
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.52 E-value=1.9e-06 Score=77.06 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccC----------ChHHHHHHHHHHHhcccccEEE--Eec
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLS----------TPDIACNILTTLISNLSIPVSC--KIR 177 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~----------~~~~~~eiv~~v~~~~~~pv~v--Kir 177 (306)
.+.+.+.+.++.+++ |+|.+||++ |.+....|+ -.+.+ +.+...++++.+|+..++|+.+ +..
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG--~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n 86 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVADG--PVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN 86 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 466889999998875 999999997 544433332 22211 2357889999999877788655 444
Q ss_pred cCCChHH-HHHHHHHHHHcCCcEEEEccc--------------------------CC--------------------CCC
Q psy4398 178 VFHNEAD-TIALCKRLEACGIIAIGVHGR--------------------------TK--------------------AER 210 (306)
Q Consensus 178 ~g~~~~~-~~~~a~~l~~~G~d~i~v~~~--------------------------~~--------------------~~~ 210 (306)
+-... ..++++.+.++|+|++++++- +. .+.
T Consensus 87 --~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~ 164 (242)
T cd04724 87 --PILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGV 164 (242)
T ss_pred --HHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCC
Confidence 21111 356677777777777776221 00 000
Q ss_pred C-----CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCC
Q psy4398 211 P-----RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYP 259 (306)
Q Consensus 211 ~-----~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~ 259 (306)
. ..+...+.++++++..++||+.-|||++.++++++.+. ++.+|+++++
T Consensus 165 tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~ADgvVvGSaiv~ 220 (242)
T cd04724 165 TGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKYADGVIVGSALVK 220 (242)
T ss_pred CCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHccCCEEEECHHHHH
Confidence 0 01223578899999889999999999999999998875 6699998863
No 121
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.50 E-value=3e-05 Score=67.78 Aligned_cols=204 Identities=16% Similarity=0.136 Sum_probs=120.3
Q ss_pred cccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhh-hhhcccccccccCCCCCceeeecCCCCC
Q psy4398 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER-KVNDLLNTIDFVDPLDGSVVFRTCPREK 101 (306)
Q Consensus 23 ~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (306)
+|+|.+|+.|+++-.+--.+...++......|+.++..-.-..+. ... ..+. +.+.++..+
T Consensus 1 ki~g~~f~SRL~lGTgky~s~~~m~~ai~aSg~evvTvalRR~~~---~~~~~~~~---------------~~~~i~~~~ 62 (247)
T PF05690_consen 1 KIGGKEFRSRLILGTGKYPSPEVMREAIEASGAEVVTVALRRVNL---GSKPGGDN---------------ILDYIDRSG 62 (247)
T ss_dssp -ETTEEES-SEEEE-STSSSHHHHHHHHHHTT-SEEEEECCGSTT---TS-TTCHH---------------CCCCTTCCT
T ss_pred CcCCEEeecceEEecCCCCCHHHHHHHHHHhCCcEEEEEEecccC---CCCCCCcc---------------HHHHhcccC
Confidence 578999999999998885555557776667887776554211110 000 0111 223333346
Q ss_pred CceEEEecC-CCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 102 NKIILQIGT-ADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g-~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
..+..|-.| .+.++....|+.+.+ +-+-|-|..-- |. -.|+-|+-.+.+-.+.+.+. ++-|..-+.
T Consensus 63 ~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~-------D~--~~L~PD~~etl~Aae~Lv~e-GF~VlPY~~- 131 (247)
T PF05690_consen 63 YTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIG-------DD--KTLLPDPIETLKAAEILVKE-GFVVLPYCT- 131 (247)
T ss_dssp SEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS--------T--TT--B-HHHHHHHHHHHHHT-T-EEEEEE--
T ss_pred CEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeC-------CC--CCcCCChhHHHHHHHHHHHC-CCEEeecCC-
Confidence 667777654 689999999998876 67776664321 11 13445555544444444332 677777777
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
+| .-+|++|++.||..|---+-.. +.-.|..+...++.+.+..++|||.-+||.++.|+.++++.|. .+.+
T Consensus 132 -~D----~v~akrL~d~GcaavMPlgsPI-GSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 132 -DD----PVLAKRLEDAGCAAVMPLGSPI-GSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp -S-----HHHHHHHHHTT-SEBEEBSSST-TT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred -CC----HHHHHHHHHCCCCEEEeccccc-ccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 44 5689999999999987544322 2223345678889999999999999999999999999999864 6666
Q ss_pred ccC--CCC
Q psy4398 256 NHY--PVE 261 (306)
Q Consensus 256 all--~~p 261 (306)
++- .||
T Consensus 206 AiA~A~dP 213 (247)
T PF05690_consen 206 AIAKAKDP 213 (247)
T ss_dssp HHHTSSSH
T ss_pred HHhccCCH
Confidence 653 366
No 122
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.49 E-value=1.3e-05 Score=68.63 Aligned_cols=137 Identities=12% Similarity=0.161 Sum_probs=103.0
Q ss_pred CCceEEEecCCC----HHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEE
Q psy4398 101 KNKIILQIGTAD----PERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVS 173 (306)
Q Consensus 101 ~~p~ivql~g~~----~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~ 173 (306)
..|+++++...+ .++..+.++.+.+ |+|++.+.. |. +.....+.+.+.+.++++.+.+ ++|+.
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~pv~ 117 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI--------GSLKEGDWEEVLEEIAAVVEAADGGLPLK 117 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH--------HHHhCCCHHHHHHHHHHHHHHhcCCceEE
Confidence 468999998887 7788888887765 999999842 11 1111124678888888888874 89999
Q ss_pred EEeccCC--ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q psy4398 174 CKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 174 vKir~g~--~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~ 249 (306)
++...+. +.+...++++.+.+.|+++|..+.... .+..+++.++++++.+ ++|++..||+.+.+.+.+.+..
T Consensus 118 iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~ 193 (201)
T cd00945 118 VILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEA 193 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHh
Confidence 9998643 456678888888899999998764321 1234788889999888 6799999999988888888876
Q ss_pred hh
Q psy4398 250 NC 251 (306)
Q Consensus 250 ~v 251 (306)
|+
T Consensus 194 Ga 195 (201)
T cd00945 194 GA 195 (201)
T ss_pred cc
Confidence 53
No 123
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.49 E-value=8e-07 Score=78.73 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=92.3
Q ss_pred EEecC--CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec---c-C
Q psy4398 106 LQIGT--ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR---V-F 179 (306)
Q Consensus 106 vql~g--~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir---~-g 179 (306)
+|+.| .+.++.. +..+.|++.+-++ +... +|+++.++.+.+.+ +-+.+++|-. . |
T Consensus 76 v~~gGGIrs~edv~---~l~~~G~~~vivG--------------taa~-~~~~l~~~~~~~g~-ivvslD~~~g~v~~~g 136 (228)
T PRK04128 76 VQVGGGLRTYESIK---DAYEIGVENVIIG--------------TKAF-DLEFLEKVTSEFEG-ITVSLDVKGGRIAVKG 136 (228)
T ss_pred EEEcCCCCCHHHHH---HHHHCCCCEEEEC--------------chhc-CHHHHHHHHHHcCC-EEEEEEccCCeEecCC
Confidence 45543 3444444 4445699998773 3344 79999999888743 4444555322 1 3
Q ss_pred CCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHh---hhh
Q psy4398 180 HNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH-LKIPVIANGGSKEIVDYGGVFSL---NCA 252 (306)
Q Consensus 180 ~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~-~~ipvia~GGI~s~~~~~~~l~~---~v~ 252 (306)
|.. -+..++++.+++. +..+.++...+++...++. .+.+. .++|||++|||+|.+|..++.+. ++.
T Consensus 137 w~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d------~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gvi 209 (228)
T PRK04128 137 WLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE------EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVI 209 (228)
T ss_pred CeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHH------HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 422 2367888888888 9999999999999888863 33333 48999999999999999999886 459
Q ss_pred hccccCCCC
Q psy4398 253 FLRNHYPVE 261 (306)
Q Consensus 253 vGrall~~p 261 (306)
+|+++|.+-
T Consensus 210 vg~al~~g~ 218 (228)
T PRK04128 210 IGKALYEGR 218 (228)
T ss_pred EEhhhhcCC
Confidence 999999764
No 124
>KOG0538|consensus
Probab=98.43 E-value=3e-05 Score=69.97 Aligned_cols=208 Identities=16% Similarity=0.141 Sum_probs=125.9
Q ss_pred ccccccccccCCceEEccCC-----CC-CCHHHHHHHHHcCCCEEEecceec--hhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMV-----RM-NTLPFRLLALDYGADLVYSEELVD--HKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~-----~~-t~~~~r~~~~~~G~g~~~te~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
+++++-|-++.-||++||-. .+ .+..-...+...|...+++-..+. +++.
T Consensus 58 ~sTtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~---------------------- 115 (363)
T KOG0538|consen 58 TSTTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSVEDIA---------------------- 115 (363)
T ss_pred ccceeccccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHH----------------------
Confidence 78888899999999999954 22 222333334455555555543221 1111
Q ss_pred eeeecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCC----------------c----ccccc------
Q psy4398 92 VVFRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCP----------------K----QFSLT------ 143 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP----------------~----~~~~~------ 143 (306)
.+.+ +.--..||. ..+.+--.+..++++. ||.++-+..-.| . .|...
T Consensus 116 ---~aap--~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v 190 (363)
T KOG0538|consen 116 ---SAAP--PGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEV 190 (363)
T ss_pred ---hhCC--CCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccC
Confidence 1111 112344554 3444555666778875 888877743322 2 00000
Q ss_pred -C-------CccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q psy4398 144 -G-------GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN 215 (306)
Q Consensus 144 -~-------~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~ 215 (306)
. .|.+.. -++.+-=+=++.++..+..|+.+|== .+ .+=|+.+.++|+++|+++.-...+.-..|+
T Consensus 191 ~~~~~sg~~~~~~~~-id~Sl~W~Di~wLr~~T~LPIvvKGi--lt----~eDA~~Ave~G~~GIIVSNHGgRQlD~vpA 263 (363)
T KOG0538|consen 191 EEAGDSGLAAYVSSQ-IDPSLSWKDIKWLRSITKLPIVVKGV--LT----GEDARKAVEAGVAGIIVSNHGGRQLDYVPA 263 (363)
T ss_pred CcccchhhhhhhhcC-CCCCCChhhhHHHHhcCcCCeEEEee--cc----cHHHHHHHHhCCceEEEeCCCccccCcccc
Confidence 0 011110 12222224457777778899999844 22 233556678999999996532222223467
Q ss_pred cHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 216 RIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 216 ~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
..+.+.++.+++ ++||..-|||++..|.-+++..| +-+||+++++-
T Consensus 264 tI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gL 314 (363)
T KOG0538|consen 264 TIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGL 314 (363)
T ss_pred hHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheee
Confidence 889999999999 79999999999988888888764 59999987754
No 125
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.43 E-value=6.8e-07 Score=79.24 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+++.|+|.+++++.+.... ..+.++++++++++.+++|+++.|||+|+++++++++.++ .+|++++.
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~-~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG-GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc-CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 4688999999999999999998765321 2356899999999999999999999999999999999765 89999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
+|.+.+.
T Consensus 108 dp~~~~~ 114 (234)
T cd04732 108 NPELVKE 114 (234)
T ss_pred ChHHHHH
Confidence 8855443
No 126
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.41 E-value=1.5e-05 Score=69.26 Aligned_cols=120 Identities=15% Similarity=0.111 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC-------------
Q psy4398 114 ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF------------- 179 (306)
Q Consensus 114 ~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g------------- 179 (306)
+++.+.++.+.+ |.|+|++ |++..-+.+.+.++++++|+.+++|+.+-.+..
T Consensus 11 e~~~~ia~~v~~~gtDaI~V--------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~ 76 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMV--------------GGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFFM 76 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEE--------------cCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEEE
Confidence 445556665654 8999998 333334677788888888887778877643310
Q ss_pred ------------------------------------------------------CChHHHHHHHHHHHHcCCcEEEEccc
Q psy4398 180 ------------------------------------------------------HNEADTIALCKRLEACGIIAIGVHGR 205 (306)
Q Consensus 180 ------------------------------------------------------~~~~~~~~~a~~l~~~G~d~i~v~~~ 205 (306)
.++++....+..++..|++.+++...
T Consensus 77 sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~ 156 (205)
T TIGR01769 77 SLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAG 156 (205)
T ss_pred EeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 01234555666666666666665332
Q ss_pred CCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 206 ~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
+. ...+.+.++++++++.+++|++..|||+|.++++++++.+
T Consensus 157 sG---a~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~G 198 (205)
T TIGR01769 157 SG---ASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAG 198 (205)
T ss_pred CC---CCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcC
Confidence 11 1234578999999999999999999999999999998764
No 127
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.39 E-value=1.1e-06 Score=77.90 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
.+..++++.+++.|++.+++++....+... +.+++.++++++.+++||++.|||++.++++++++.+ +.+|++++.
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~-~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGR-EPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCC-CCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 368999999999999999999887754443 4589999999999999999999999999999988875 599999999
Q ss_pred CCCchHHHHHHH
Q psy4398 260 VEKLPKTILYAH 271 (306)
Q Consensus 260 ~p~~~~~~l~~~ 271 (306)
+|.+.+...+.|
T Consensus 109 ~~~~~~~~~~~~ 120 (232)
T TIGR03572 109 NPDLIEEAARRF 120 (232)
T ss_pred CHHHHHHHHHHc
Confidence 986554444333
No 128
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.38 E-value=2.4e-05 Score=70.48 Aligned_cols=145 Identities=15% Similarity=0.121 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCc------ccccc--CChHHHHHHHHHHHhc-ccccEEEEeccCC
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGM------GAALL--STPDIACNILTTLISN-LSIPVSCKIRVFH 180 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~------G~~l~--~~~~~~~eiv~~v~~~-~~~pv~vKir~g~ 180 (306)
.+.+.+.++++.+. .|+|.|||-+. .+....||- --++. -+.+.+.++++++++. .++|+..=.- .
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiP--fsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y--~ 96 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVP--FSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTY--Y 96 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCC--CCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEe--c
Confidence 46778888888665 59999999543 222222210 00111 2456788899999876 6888653322 2
Q ss_pred Ch--H-HHHHHHHHHHHcCCcEEEEcccC--------------------------C-----------C--------CCCC
Q psy4398 181 NE--A-DTIALCKRLEACGIIAIGVHGRT--------------------------K-----------A--------ERPR 212 (306)
Q Consensus 181 ~~--~-~~~~~a~~l~~~G~d~i~v~~~~--------------------------~-----------~--------~~~~ 212 (306)
++ . ...++++.+.++|+|++++|+-. . . .+..
T Consensus 97 Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~T 176 (256)
T TIGR00262 97 NLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVT 176 (256)
T ss_pred cHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 22 1 24567777788888888775421 0 0 0111
Q ss_pred ------CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 213 ------HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 213 ------~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
.+...+.++++++.++.||+.-|||+|.++++++.+. ++.+|++++.
T Consensus 177 G~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 177 GARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred CCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 1234788999999999999999999999999999886 4599999874
No 129
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.34 E-value=5.1e-05 Score=68.63 Aligned_cols=153 Identities=13% Similarity=0.148 Sum_probs=111.1
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEec
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIR 177 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir 177 (306)
..|+..++...+++++.+.++... .||..+-++++- +++.-.+.++++|+.++ .++.+...
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~----------------~~~~d~~~v~~vr~~~g~~~~l~vDan 137 (265)
T cd03315 74 RVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGR----------------DPARDVAVVAALREAVGDDAELRVDAN 137 (265)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecCC----------------CHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 356666776677888877777654 599999997651 23555678889988874 56666666
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhcccc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNH 257 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGral 257 (306)
.+|+.+++.++++.+++.|+++|.- +. .+.+++..+++++.+++||++.+.+.+..+++++++... ...+
T Consensus 138 ~~~~~~~a~~~~~~l~~~~i~~iEe-------P~-~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~--~d~v 207 (265)
T cd03315 138 RGWTPKQAIRALRALEDLGLDYVEQ-------PL-PADDLEGRAALARATDTPIMADESAFTPHDAFRELALGA--ADAV 207 (265)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEC-------CC-CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCC--CCEE
Confidence 6799999999999999999988842 22 235788999999999999999999999999999887532 0011
Q ss_pred CCCC-Cc----hHHHHHHHHHhcCCCC
Q psy4398 258 YPVE-KL----PKTILYAHCKYKRFEV 279 (306)
Q Consensus 258 l~~p-~~----~~~~l~~~~~~~g~~~ 279 (306)
.-+| .+ .-..+.++.+++|++.
T Consensus 208 ~~k~~~~GGi~~~~~~~~~A~~~gi~~ 234 (265)
T cd03315 208 NIKTAKTGGLTKAQRVLAVAEALGLPV 234 (265)
T ss_pred EEecccccCHHHHHHHHHHHHHcCCcE
Confidence 1233 11 2236677788888873
No 130
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.33 E-value=1.5e-05 Score=77.51 Aligned_cols=127 Identities=16% Similarity=0.090 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a 189 (306)
..++.+.++...++.|+|.|+++....+ ...+.+.++.+++.. +.||.++-- . +.+-+
T Consensus 221 ~~~~~~~r~~~L~~aG~d~I~vd~a~g~---------------~~~~~~~i~~i~~~~~~~~vi~G~v--~----t~~~a 279 (450)
T TIGR01302 221 TREFDKERAEALVKAGVDVIVIDSSHGH---------------SIYVIDSIKEIKKTYPDLDIIAGNV--A----TAEQA 279 (450)
T ss_pred CchhHHHHHHHHHHhCCCEEEEECCCCc---------------HhHHHHHHHHHHHhCCCCCEEEEeC--C----CHHHH
Confidence 3456677777777789999999876532 245678889998874 788888544 2 35666
Q ss_pred HHHHHcCCcEEEEc--cc----CCCCCCCCCCcHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 190 KRLEACGIIAIGVH--GR----TKAERPRHRNRIEMIRTLTQ---HLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 190 ~~l~~~G~d~i~v~--~~----~~~~~~~~p~~~~~v~~i~~---~~~ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
+.+.++|+|+|.+. +. ++.-...+.+.+..+.++++ ..++|||+.|||.+..|+.++++.|+ ++|+++
T Consensus 280 ~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~ 359 (450)
T TIGR01302 280 KALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLL 359 (450)
T ss_pred HHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 77788999999864 11 11111123335566555544 45899999999999999999999865 999886
Q ss_pred C
Q psy4398 258 Y 258 (306)
Q Consensus 258 l 258 (306)
-
T Consensus 360 a 360 (450)
T TIGR01302 360 A 360 (450)
T ss_pred h
Confidence 4
No 131
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.32 E-value=1.8e-05 Score=77.87 Aligned_cols=128 Identities=12% Similarity=0.128 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEE-eccCCChHHHHH
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCK-IRVFHNEADTIA 187 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vK-ir~g~~~~~~~~ 187 (306)
|..++.+..+...+++|+|.|-+..+ + .+...+.+.++.+|+.. +.+|.++ +. +.+
T Consensus 244 g~~~~~~~r~~~l~~ag~d~i~iD~~--~-------------g~~~~~~~~i~~ik~~~p~~~vi~g~v~-------t~e 301 (505)
T PLN02274 244 GTRESDKERLEHLVKAGVDVVVLDSS--Q-------------GDSIYQLEMIKYIKKTYPELDVIGGNVV-------TMY 301 (505)
T ss_pred cCCccHHHHHHHHHHcCCCEEEEeCC--C-------------CCcHHHHHHHHHHHHhCCCCcEEEecCC-------CHH
Confidence 44566777777777889999988753 2 12345567889999877 4777765 44 456
Q ss_pred HHHHHHHcCCcEEEEc--cc----CCCC---CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 188 LCKRLEACGIIAIGVH--GR----TKAE---RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~--~~----~~~~---~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
-++.+.++|+|+|.+. .. ++.. .......+..+.++.+..++|||+-|||.+..++.+++..|+ ++|+
T Consensus 302 ~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vGs 381 (505)
T PLN02274 302 QAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMGS 381 (505)
T ss_pred HHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEch
Confidence 6788888999999874 22 2111 111123566788888888999999999999999999999864 9999
Q ss_pred ccCC
Q psy4398 256 NHYP 259 (306)
Q Consensus 256 all~ 259 (306)
++..
T Consensus 382 ~~~~ 385 (505)
T PLN02274 382 FLAG 385 (505)
T ss_pred hhcc
Confidence 8764
No 132
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.29 E-value=0.0002 Score=63.42 Aligned_cols=206 Identities=16% Similarity=0.124 Sum_probs=128.1
Q ss_pred cccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCC
Q psy4398 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPRE 100 (306)
Q Consensus 21 ~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (306)
+.+|+|.+|.+|+++-.+--.+...+.......|+.++..-.-..+. ........++ +.++..
T Consensus 7 ~l~i~g~~f~SRL~lGTgky~s~~~~~~ai~aSg~evvTvalRR~~~--~~~~~~~~~l---------------~~i~~~ 69 (267)
T CHL00162 7 KLKIGNKSFNSRLMLGTGKYKSLKDAIQSIEASGCEIVTVAIRRLNN--NLLNDNSNLL---------------NGLDWN 69 (267)
T ss_pred ceEECCEEeecceEEecCCCCCHHHHHHHHHHhCCcEEEEEEEEecc--CcCCCcchHH---------------Hhhchh
Confidence 57899999999999988875455556666667887766554211110 0000001111 111112
Q ss_pred CCceEEEe-cCCCHHHHHHHHHHHhc-C-------CCEEEEcc-CCCccccccCCccccccCChHHHHHHHHHHHhcccc
Q psy4398 101 KNKIILQI-GTADPERALEAAKKVEH-D-------VAAIDINM-GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI 170 (306)
Q Consensus 101 ~~p~ivql-~g~~~~~~~~aa~~~~~-g-------~d~veln~-gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~ 170 (306)
+..+..|- ++.+.++....|+.+.+ + -+-|-|.. +-|. .++-|+-.+.+..+.+.+. ++
T Consensus 70 ~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~----------~LlPD~~etl~Aae~Lv~e-GF 138 (267)
T CHL00162 70 KLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPK----------YLLPDPIGTLKAAEFLVKK-GF 138 (267)
T ss_pred ccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCc----------ccCCChHHHHHHHHHHHHC-CC
Confidence 22344443 35688888888887765 3 34444431 2221 3455555545544444332 56
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
-|..-+. +| .-+|++|++.||..|---+-.. +.-.+..+...++.|.+..++|||.-+||.+++|+..+++.|
T Consensus 139 ~VlPY~~--~D----~v~a~rLed~Gc~aVMPlgsPI-GSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElG 211 (267)
T CHL00162 139 TVLPYIN--AD----PMLAKHLEDIGCATVMPLGSPI-GSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELG 211 (267)
T ss_pred EEeecCC--CC----HHHHHHHHHcCCeEEeeccCcc-cCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcC
Confidence 6776666 44 4689999999999986433221 122234466788999999999999999999999999999985
Q ss_pred ---hhhccccCC--CC
Q psy4398 251 ---CAFLRNHYP--VE 261 (306)
Q Consensus 251 ---v~vGrall~--~p 261 (306)
+.+.+++.. ||
T Consensus 212 aDgVL~nSaIakA~dP 227 (267)
T CHL00162 212 ASGVLLNTAVAQAKNP 227 (267)
T ss_pred CCEEeecceeecCCCH
Confidence 477788764 55
No 133
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.29 E-value=1.7e-05 Score=68.25 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=101.9
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEE-ccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDI-NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~vel-n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~ 178 (306)
+-|+.++ +-+|+.|..+ +++|+|.||| |+-|=+. ....-..+.+.++.++.|+-+ +++++|-+.-
T Consensus 61 ~lPICVS--aVep~~f~~a---V~AGAdliEIGNfDsFY~--------qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPH 127 (242)
T PF04481_consen 61 NLPICVS--AVEPELFVAA---VKAGADLIEIGNFDSFYA--------QGRRFSAEEVLALTRETRSLLPDITLSVTVPH 127 (242)
T ss_pred CCCeEee--cCCHHHHHHH---HHhCCCEEEecchHHHHh--------cCCeecHHHHHHHHHHHHHhCCCCceEEecCc
Confidence 4566665 4577777654 4579999999 5444221 111134677888888888877 6888888875
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---------CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH---------RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---------p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
-...++-+++|..|++.|+|.|.-.|.+....... .+.+...+.|.+.+++||+..-|+.+..- --++.+
T Consensus 128 iL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~-PmAiaa 206 (242)
T PF04481_consen 128 ILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTA-PMAIAA 206 (242)
T ss_pred cccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhH-HHHHHc
Confidence 55677889999999999999999877665433211 12567788999999999999999876543 333333
Q ss_pred ---hhhhcccc
Q psy4398 250 ---NCAFLRNH 257 (306)
Q Consensus 250 ---~v~vGral 257 (306)
|+.+|+++
T Consensus 207 GAsGVGVGSav 217 (242)
T PF04481_consen 207 GASGVGVGSAV 217 (242)
T ss_pred CCcccchhHHh
Confidence 67999987
No 134
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.29 E-value=0.00011 Score=66.20 Aligned_cols=122 Identities=13% Similarity=0.169 Sum_probs=79.0
Q ss_pred HHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc---ccccEEEEec-----cC-CChHHHHHHH
Q psy4398 119 AAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN---LSIPVSCKIR-----VF-HNEADTIALC 189 (306)
Q Consensus 119 aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~---~~~pv~vKir-----~g-~~~~~~~~~a 189 (306)
+.+.++.|+|+|++-.- .|. ..+.+.+ +.++++++. .+.|+.+..- .+ .+.+...+.+
T Consensus 96 v~~al~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~ 162 (258)
T TIGR01949 96 VEDAIRMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAA 162 (258)
T ss_pred HHHHHHCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHH
Confidence 33445569999888422 121 1122333 445555544 3788887433 11 2233455557
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC--CHHH----HHHHHHh---hhhhccccCCC
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK--EIVD----YGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~--s~~~----~~~~l~~---~v~vGrall~~ 260 (306)
+.+.+.|+|+|-+. + +..++.++++.+..++||++.|||+ |.++ +.++++. |+++||+++..
T Consensus 163 ~~a~~~GADyikt~-------~--~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 163 RLGAELGADIVKTP-------Y--TGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHCCCEEecc-------C--CCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 88889999999864 1 1367889999988899999999999 6444 4555565 45999999876
Q ss_pred CC
Q psy4398 261 EK 262 (306)
Q Consensus 261 p~ 262 (306)
+.
T Consensus 234 ~d 235 (258)
T TIGR01949 234 DD 235 (258)
T ss_pred CC
Confidence 54
No 135
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.28 E-value=2.1e-05 Score=70.86 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccC----------ChHHHHHHHHHHH-hcccccEEEEecc
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLS----------TPDIACNILTTLI-SNLSIPVSCKIRV 178 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~----------~~~~~~eiv~~v~-~~~~~pv~vKir~ 178 (306)
.+.+.+.++++.+. .|+|.|||-+.- +....| |-.+.+ +.+.+.++++++| +..++|+.+-.-
T Consensus 23 P~~~~~~~~~~~l~~~Gad~iElGiPf--SDP~aD--GpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y- 97 (258)
T PRK13111 23 PDLETSLEIIKALVEAGADIIELGIPF--SDPVAD--GPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTY- 97 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC--CCCccc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEec-
Confidence 46788888888665 599999996542 222222 112211 4566788899998 546788654332
Q ss_pred CCCh--H-HHHHHHHHHHHcCCcEEEEcc--------------------------cCC----------CCC---------
Q psy4398 179 FHNE--A-DTIALCKRLEACGIIAIGVHG--------------------------RTK----------AER--------- 210 (306)
Q Consensus 179 g~~~--~-~~~~~a~~l~~~G~d~i~v~~--------------------------~~~----------~~~--------- 210 (306)
+++ . ...++++.+.++|+|++++.+ .+. ...
T Consensus 98 -~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~G 176 (258)
T PRK13111 98 -YNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAG 176 (258)
T ss_pred -ccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCC
Confidence 221 1 234566666666666666532 110 000
Q ss_pred C-----CCCCc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCC
Q psy4398 211 P-----RHRNR-IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYP 259 (306)
Q Consensus 211 ~-----~~p~~-~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~ 259 (306)
. ..+.. .+.++++++.+++||+..+||.+.+++.++.+. ++.+|+++.+
T Consensus 177 vTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADGviVGSaiv~ 233 (258)
T PRK13111 177 VTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADGVIVGSALVK 233 (258)
T ss_pred CCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCEEEEcHHHHH
Confidence 0 11223 458999999999999999999999999998874 7799999863
No 136
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.27 E-value=2.4e-06 Score=74.16 Aligned_cols=84 Identities=15% Similarity=0.256 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
..+.+++|+...+.|+|.|++-+.+....-. ...+++++++++.+.+|+...|||+|++|++.++.+|+ ++.++.+
T Consensus 29 ~GDpVelA~~Y~e~GADElvFlDItAs~~gr-~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv 107 (256)
T COG0107 29 AGDPVELAKRYNEEGADELVFLDITASSEGR-ETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAV 107 (256)
T ss_pred cCChHHHHHHHHHcCCCeEEEEecccccccc-hhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHh
Confidence 3468999999999999999986665432222 34889999999999999999999999999999999986 9999999
Q ss_pred CCCCchHH
Q psy4398 259 PVEKLPKT 266 (306)
Q Consensus 259 ~~p~~~~~ 266 (306)
.||.+...
T Consensus 108 ~~p~lI~~ 115 (256)
T COG0107 108 KDPELITE 115 (256)
T ss_pred cChHHHHH
Confidence 99965543
No 137
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.25 E-value=3.3e-06 Score=74.81 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++++.+++.|++.+++.+...... ..+.+++.++++++.+++||++.|||+|.++++.+++.|+ .+|++++.+
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~-g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~ 109 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKA-GKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKN 109 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc-CCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhC
Confidence 688999999999999999988643211 1246899999999999999999999999999999998754 999999998
Q ss_pred CCchH
Q psy4398 261 EKLPK 265 (306)
Q Consensus 261 p~~~~ 265 (306)
|.+.+
T Consensus 110 ~~~l~ 114 (233)
T PRK00748 110 PELVK 114 (233)
T ss_pred HHHHH
Confidence 84443
No 138
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.24 E-value=3.3e-05 Score=67.75 Aligned_cols=132 Identities=12% Similarity=0.118 Sum_probs=88.6
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
+.|+++.=+..++. ++....+.|+|+|-+... .. .++.+.++++..+. .+....+-+.
T Consensus 72 ~iPi~~~~~i~~~~---~v~~~~~~Gad~v~l~~~--------------~~-~~~~~~~~~~~~~~-~g~~~~v~v~--- 129 (217)
T cd00331 72 SLPVLRKDFIIDPY---QIYEARAAGADAVLLIVA--------------AL-DDEQLKELYELARE-LGMEVLVEVH--- 129 (217)
T ss_pred CCCEEECCeecCHH---HHHHHHHcCCCEEEEeec--------------cC-CHHHHHHHHHHHHH-cCCeEEEEEC---
Confidence 35666542233442 233333469999988421 11 23566777776644 4655555555
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh---hhhhcc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL---NCAFLR 255 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~---~v~vGr 255 (306)
+.++ ++.+.+.|++.+.+++++... . +.+++.+.++++.+ ++|+++.|||.+++++.++++. ++.+|+
T Consensus 130 ~~~e----~~~~~~~g~~~i~~t~~~~~~--~-~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGs 202 (217)
T cd00331 130 DEEE----LERALALGAKIIGINNRDLKT--F-EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGE 202 (217)
T ss_pred CHHH----HHHHHHcCCCEEEEeCCCccc--c-CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECH
Confidence 2222 566677999999999665322 2 34678899999884 7999999999999999999987 459999
Q ss_pred ccCCCC
Q psy4398 256 NHYPVE 261 (306)
Q Consensus 256 all~~p 261 (306)
+++..+
T Consensus 203 ai~~~~ 208 (217)
T cd00331 203 SLMRAP 208 (217)
T ss_pred HHcCCC
Confidence 998644
No 139
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.24 E-value=2.2e-05 Score=68.19 Aligned_cols=137 Identities=17% Similarity=0.152 Sum_probs=88.5
Q ss_pred EEecCCCHHHHHHHHHHHhc-CCCEEEEccC-CCccccccCCccccccCChHHHHHHHHHHHhcccccE--EEEeccCCC
Q psy4398 106 LQIGTADPERALEAAKKVEH-DVAAIDINMG-CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV--SCKIRVFHN 181 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~-g~d~veln~g-cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv--~vKir~g~~ 181 (306)
++|...+++.+.+.++.+.+ |+|.|++-+. +|. ..+.....++++++++....|+ .++.. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~------------~~~~~~~~~~v~~i~~~~~~~v~v~lm~~---~ 67 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHF------------VPNLTFGPPVLEALRKYTDLPIDVHLMVE---N 67 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC------------CCCcccCHHHHHHHHhcCCCcEEEEeeeC---C
Confidence 56778888899999998875 9999999632 111 1122244566777776556664 35555 2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCC-------------------------------------C--------CCCCC---
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTK-------------------------------------A--------ERPRH--- 213 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~-------------------------------------~--------~~~~~--- 213 (306)
..++++.+.++|+|++++|+... + ....+
T Consensus 68 ---~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~ 144 (210)
T TIGR01163 68 ---PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKF 144 (210)
T ss_pred ---HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccc
Confidence 34567777788888888775320 0 00011
Q ss_pred -CCcHHHHHHHHhhCC-----CcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 214 -RNRIEMIRTLTQHLK-----IPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 214 -p~~~~~v~~i~~~~~-----ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
+..++.++++++.++ +|+++.|||+ .+++.++++.+ +.+||+++..+
T Consensus 145 ~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~~ 200 (210)
T TIGR01163 145 IPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGAD 200 (210)
T ss_pred cHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCC
Confidence 112344555655543 7999999996 79999988865 49999998654
No 140
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.24 E-value=5.5e-05 Score=66.10 Aligned_cols=127 Identities=12% Similarity=0.164 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC-CChHHHHHHHHHH
Q psy4398 115 RALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF-HNEADTIALCKRL 192 (306)
Q Consensus 115 ~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g-~~~~~~~~~a~~l 192 (306)
...++...++.|+|.|++-+. +|.....+.+.+.+-+.++++.+ +.|+-|-+-.+ .+.++....++.+
T Consensus 72 K~~E~~~Av~~GAdEiDvv~n----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia 141 (211)
T TIGR00126 72 KLYETKEAIKYGADEVDMVIN----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEIC 141 (211)
T ss_pred HHHHHHHHHHcCCCEEEeecc----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 445555555679999998543 33333356677777778887766 45555533333 3446678999999
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
.++|+|+|-.+.. ...+.+..+.++.+++.+ ++||-++|||+|.+++.++++.|+ -+|+
T Consensus 142 ~eaGADfvKTsTG----f~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 142 IDAGADFVKTSTG----FGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred HHhCCCEEEeCCC----CCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 9999999976422 112335566666666666 699999999999999999998876 5555
No 141
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.23 E-value=4.3e-06 Score=75.53 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+.+.|++.|++.+-...+...+ .+++.++++.+.+++||++.|||++.+++++++..++ .+|++++.
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~-~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGSE-PNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCCc-ccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 3689999999999999999998876655444 4999999999999999999999999999999998654 88999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
+|.+.+.
T Consensus 109 ~~~~~~~ 115 (258)
T PRK01033 109 DPDLITE 115 (258)
T ss_pred CHHHHHH
Confidence 9844433
No 142
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.22 E-value=4.4e-06 Score=74.70 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++|+.+.+.|++.|++-+-.... ....+++.++++.+.+++||...|||+|.++++.++..|+ .+|++++.|
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF--GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC--CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 67899999999999999987665432 2345889999999999999999999999999999999876 899999999
Q ss_pred CCchHHHHHHH
Q psy4398 261 EKLPKTILYAH 271 (306)
Q Consensus 261 p~~~~~~l~~~ 271 (306)
|.+.+...+.+
T Consensus 111 p~l~~~i~~~~ 121 (241)
T PRK14024 111 PEWCARVIAEH 121 (241)
T ss_pred HHHHHHHHHHh
Confidence 96555444444
No 143
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.18 E-value=0.00032 Score=62.29 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=62.8
Q ss_pred ccccEEEEecc-C------CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC--C
Q psy4398 168 LSIPVSCKIRV-F------HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS--K 238 (306)
Q Consensus 168 ~~~pv~vKir~-g------~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI--~ 238 (306)
.++|+++-... | .+.++....++.+.+.|+|+|-+.. +.+++.++++.+.+++||++.||+ .
T Consensus 121 ~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~---------~~~~~~~~~i~~~~~~pvv~~GG~~~~ 191 (235)
T cd00958 121 YGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY---------TGDAESFKEVVEGCPVPVVIAGGPKKD 191 (235)
T ss_pred cCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC---------CCCHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 47888875542 1 1234445558888899999998842 226788999999999999999997 5
Q ss_pred CHHH----HHHHHHhh---hhhccccCCCCC
Q psy4398 239 EIVD----YGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 239 s~~~----~~~~l~~~---v~vGrall~~p~ 262 (306)
|.++ ++++++.| +.+||+++..+.
T Consensus 192 ~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 192 SEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred CHHHHHHHHHHHHHcCCcEEEechhhhcCCC
Confidence 6655 66666664 599999997664
No 144
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.13 E-value=0.00027 Score=61.33 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=93.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
.+++-+.-.+++.+ ++-+.++.|+|.|-+|..+|. ..+.++++.+++ .++++.+-+. +.
T Consensus 54 ~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~~~~~----------------~~~~~~i~~~~~-~g~~~~~~~~---~~ 112 (206)
T TIGR03128 54 KVLADLKTMDAGEY-EAEQAFAAGADIVTVLGVADD----------------ATIKGAVKAAKK-HGKEVQVDLI---NV 112 (206)
T ss_pred EEEEEEeeccchHH-HHHHHHHcCCCEEEEeccCCH----------------HHHHHHHHHHHH-cCCEEEEEec---CC
Confidence 45555533355543 222233469999999865432 334667777765 4888887653 12
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.+..+.++.+.+.|+|++.++.....+.+. +..++.++++++.+. +++...||| +.+++.++++.|+ .+||+++
T Consensus 113 ~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~-~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 113 KDKVKRAKELKELGADYIGVHTGLDEQAKG-QNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred CChHHHHHHHHHcCCCEEEEcCCcCcccCC-CCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhc
Confidence 335556666677899999987543333332 346778888888774 555569999 6899999998754 9999998
Q ss_pred CCCCchHHHHHHH
Q psy4398 259 PVEKLPKTILYAH 271 (306)
Q Consensus 259 ~~p~~~~~~l~~~ 271 (306)
..+. ++..++.+
T Consensus 191 ~~~d-~~~~~~~l 202 (206)
T TIGR03128 191 KAAD-PAEAARQI 202 (206)
T ss_pred CCCC-HHHHHHHH
Confidence 7543 33334443
No 145
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.12 E-value=0.00016 Score=62.77 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHH
Q psy4398 112 DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKR 191 (306)
Q Consensus 112 ~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~ 191 (306)
++++..+.+. +.++|+|.||-.- .+ +.++.+++..+.+++..++... ....+.. .
T Consensus 61 ~~~~i~~ia~--~~~~d~Vqlhg~e----------------~~----~~~~~l~~~~~~~~i~~i~~~~--~~~~~~~-~ 115 (203)
T cd00405 61 DLEEILEIAE--ELGLDVVQLHGDE----------------SP----EYCAQLRARLGLPVIKAIRVKD--EEDLEKA-A 115 (203)
T ss_pred CHHHHHHHHH--hcCCCEEEECCCC----------------CH----HHHHHHHhhcCCcEEEEEecCC--hhhHHHh-h
Confidence 4444444333 2388999997221 12 2355666666777774455322 2222222 3
Q ss_pred HHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCC-Cch
Q psy4398 192 LEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVE-KLP 264 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p-~~~ 264 (306)
....|+|++.+...+... ....+.+|+.+++++ .++|+++.||| +++++.++++. ++.+.+++...| ..-
T Consensus 116 ~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd 192 (203)
T cd00405 116 AYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGIKD 192 (203)
T ss_pred hccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCCcC
Confidence 345799999886655432 122356888888776 68999999999 79999988874 569999998877 333
Q ss_pred HHHHHHHHH
Q psy4398 265 KTILYAHCK 273 (306)
Q Consensus 265 ~~~l~~~~~ 273 (306)
..-++++++
T Consensus 193 ~~ki~~~~~ 201 (203)
T cd00405 193 PEKIRAFIE 201 (203)
T ss_pred HHHHHHHHH
Confidence 235555554
No 146
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.11 E-value=1.1e-05 Score=75.73 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHhcccccEEEE-eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--
Q psy4398 152 STPDIACNILTTLISNLSIPVSCK-IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-- 228 (306)
Q Consensus 152 ~~~~~~~eiv~~v~~~~~~pv~vK-ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-- 228 (306)
.+|....|.+..+++.+..|+.+| +. + ..+ ++.+-+.|+++|.++.-.......++...+.+.+++++++
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~kGV~---~---~~D-~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~ 273 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLKGIL---A---PED-AAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDR 273 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHhCCC---C---HHH-HHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCC
Confidence 344455555555555555555444 22 1 122 3445568999999864322222334567899999999995
Q ss_pred CcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 229 IPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 229 ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
++|++.|||++..|+-+++..|+ .+||+++.
T Consensus 274 ~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~ 307 (360)
T COG1304 274 IEVIADGGIRSGLDVAKALALGADAVGIGRPFLY 307 (360)
T ss_pred eEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHH
Confidence 99999999999999999998754 88988764
No 147
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.11 E-value=2.2e-05 Score=73.95 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCC--------CCCcHHHHHH
Q psy4398 152 STPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR--------HRNRIEMIRT 222 (306)
Q Consensus 152 ~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--------~p~~~~~v~~ 222 (306)
.+++.+.+.|+.+|+.. +.||.+|+..+...++ ++..+.++|+|.|+|+|........ +.+....+.+
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~---~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~ 261 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRGVED---IAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALAR 261 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHH---HHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHH---HHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHH
Confidence 46888999999999988 8999999997655433 2333788999999998865332221 1112223334
Q ss_pred HHhhC-------CCcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 223 LTQHL-------KIPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 223 i~~~~-------~ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
+.+.+ ++.+|+.||+.+..|+-.++..|+ .+||+.
T Consensus 262 a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~ 306 (368)
T PF01645_consen 262 AHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAA 306 (368)
T ss_dssp HHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchh
Confidence 44332 489999999999999988887654 555543
No 148
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.11 E-value=4.3e-05 Score=69.08 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=97.2
Q ss_pred eEEEecC--CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCc------ccccc--CChHHHHHHHHHHHhcccccE
Q psy4398 104 IILQIGT--ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGM------GAALL--STPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 104 ~ivql~g--~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~------G~~l~--~~~~~~~eiv~~v~~~~~~pv 172 (306)
++.=+.. .+.+.+.++++.+. .|+|.|||-+.- +....||- --+|. -+.+.+.++++++|+..++|+
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPf--SDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~ 94 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPY--SDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPI 94 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCC--CCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCE
Confidence 4444433 36678888888665 599999995432 22122210 00111 245677889999987778886
Q ss_pred EEEeccCCCh--H-HHHHHHHHHHHcCCcEEEEcccC--------------------------C----------CCC---
Q psy4398 173 SCKIRVFHNE--A-DTIALCKRLEACGIIAIGVHGRT--------------------------K----------AER--- 210 (306)
Q Consensus 173 ~vKir~g~~~--~-~~~~~a~~l~~~G~d~i~v~~~~--------------------------~----------~~~--- 210 (306)
.+-.- +++ . ...++++.+.++|+|++.+++-. . ...
T Consensus 95 vlm~Y--~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY 172 (263)
T CHL00200 95 VIFTY--YNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIY 172 (263)
T ss_pred EEEec--ccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEE
Confidence 53322 332 1 24567777888888888875421 0 000
Q ss_pred ------CCC-----CC-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccC
Q psy4398 211 ------PRH-----RN-RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHY 258 (306)
Q Consensus 211 ------~~~-----p~-~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall 258 (306)
..| +. -.++++++++.++.||..-+||+++++++++.+. |+.+|++++
T Consensus 173 ~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 173 LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 011 11 2467789999889999999999999999999876 669999984
No 149
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.10 E-value=0.00013 Score=63.41 Aligned_cols=124 Identities=14% Similarity=0.199 Sum_probs=81.5
Q ss_pred HHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC-CChHHHHHHHHHHHH
Q psy4398 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF-HNEADTIALCKRLEA 194 (306)
Q Consensus 117 ~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g-~~~~~~~~~a~~l~~ 194 (306)
.++.+.++.|+|.|++.+. +|.....+.+.+.+-+.++++.+ +.|+-+=+-.+ .+.+.....++.+.+
T Consensus 73 ~eve~A~~~GAdevdvv~~----------~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e 142 (203)
T cd00959 73 AEAREAIADGADEIDMVIN----------IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIE 142 (203)
T ss_pred HHHHHHHHcCCCEEEEeec----------HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 3344444569999999643 23223345566666667776666 45555433333 345678889999999
Q ss_pred cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhc
Q psy4398 195 CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFL 254 (306)
Q Consensus 195 ~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vG 254 (306)
+|+|.|-.+.. ....+..++.++.+++.+ ++||-++|||+|.+++.++++.|+ -+|
T Consensus 143 ~GaD~IKTsTG----~~~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 143 AGADFIKTSTG----FGPGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred hCCCEEEcCCC----CCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 99999987421 122334566666666655 689999999999999988888765 444
No 150
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=9.7e-05 Score=63.20 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCCEEEEccCCCccccccCCccccccCChH-HHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc
Q psy4398 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPD-IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195 (306)
Q Consensus 117 ~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~-~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~ 195 (306)
.+.-..++.|++.|-+...+ -.||+ .+.++++..+ ..+.-+..-++ +.+-+..+.++
T Consensus 89 keVd~L~~~Ga~IIA~DaT~--------------R~RP~~~~~~~i~~~k-~~~~l~MAD~S-------t~ee~l~a~~~ 146 (229)
T COG3010 89 KEVDALAEAGADIIAFDATD--------------RPRPDGDLEELIARIK-YPGQLAMADCS-------TFEEGLNAHKL 146 (229)
T ss_pred HHHHHHHHCCCcEEEeeccc--------------CCCCcchHHHHHHHhh-cCCcEEEeccC-------CHHHHHHHHHc
Confidence 33445566799999887544 23566 6788888843 34666667777 35556667889
Q ss_pred CCcEEE--EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 196 GIIAIG--VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 196 G~d~i~--v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
|+|.|- ++|.+........+++++++++.+ .+++||+-|.++|++.+.++++.|+ .+|+|+=
T Consensus 147 G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAIT 213 (229)
T COG3010 147 GFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAIT 213 (229)
T ss_pred CCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccC
Confidence 999995 667665333222348999999998 7999999999999999999999875 8999865
No 151
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.06 E-value=1.7e-05 Score=70.93 Aligned_cols=84 Identities=8% Similarity=-0.032 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
..++|+.+++.|++.+|+-+- ..+ +.+.++++.+.+++||...|||++ ++++++++.|+ .+|++++.+|
T Consensus 40 p~~~A~~~~~~Ga~~lHvVDL------g~~-n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~ 111 (253)
T TIGR02129 40 SSYYAKLYKDDGVKGCHVIML------GPN-NDDAAKEALHAYPGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKG 111 (253)
T ss_pred HHHHHHHHHHcCCCEEEEEEC------CCC-cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCC
Confidence 389999999999999998765 224 889999999999999999999997 99999999876 9999999998
Q ss_pred CchHHHHHHHHHhcC
Q psy4398 262 KLPKTILYAHCKYKR 276 (306)
Q Consensus 262 ~~~~~~l~~~~~~~g 276 (306)
......++++.++.|
T Consensus 112 ~i~~~~~~~i~~~fG 126 (253)
T TIGR02129 112 KFDLKRLKEIVSLVG 126 (253)
T ss_pred CCCHHHHHHHHHHhC
Confidence 655556777888876
No 152
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.05 E-value=0.00015 Score=66.17 Aligned_cols=159 Identities=11% Similarity=0.059 Sum_probs=98.0
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 99 REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
+...|+.++|-|.. ++..+.+.++.||+.|.+-.+. ..+.++.+...++++..++ .++|+-..+.-
T Consensus 72 ~~~vpv~lHlDH~~--~~e~i~~Al~~G~tsVm~d~s~-----------~~~~eni~~t~~v~~~a~~-~gv~veaE~gh 137 (281)
T PRK06806 72 QAKVPVAVHFDHGM--TFEKIKEALEIGFTSVMFDGSH-----------LPLEENIQKTKEIVELAKQ-YGATVEAEIGR 137 (281)
T ss_pred HCCCCEEEECCCCC--CHHHHHHHHHcCCCEEEEcCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 34678888887653 2333334445689999885332 1233444555555554443 36666544331
Q ss_pred -C----------CChHHHHHHHHHHHHcCCcEEEEcccCCCCCC--CCCCcHHHHHHHHhhCCCcEEEec--CCCCHHHH
Q psy4398 179 -F----------HNEADTIALCKRLEACGIIAIGVHGRTKAERP--RHRNRIEMIRTLTQHLKIPVIANG--GSKEIVDY 243 (306)
Q Consensus 179 -g----------~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--~~p~~~~~v~~i~~~~~ipvia~G--GI~s~~~~ 243 (306)
| ....+..+..+..++.|+|+|-+.-.+.-+.+ ..+.+++.++++++.+++|+++.| ||. .+++
T Consensus 138 lG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~-~e~~ 216 (281)
T PRK06806 138 VGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS-PEDF 216 (281)
T ss_pred ECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC-HHHH
Confidence 2 11123344444445679999998433222222 234689999999999999999999 875 7888
Q ss_pred HHHHHhhh---hhccccCCCCCchHHHHHHHHHhc
Q psy4398 244 GGVFSLNC---AFLRNHYPVEKLPKTILYAHCKYK 275 (306)
Q Consensus 244 ~~~l~~~v---~vGrall~~p~~~~~~l~~~~~~~ 275 (306)
.++++.|+ .+.+++..+ +...+++++++.
T Consensus 217 ~~~i~~G~~kinv~T~i~~a---~~~a~~~~~~~~ 248 (281)
T PRK06806 217 KKCIQHGIRKINVATATFNS---VITAVNNLVLNT 248 (281)
T ss_pred HHHHHcCCcEEEEhHHHHHH---HHHHHHHHHHhC
Confidence 89998865 788887753 344666666543
No 153
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.05 E-value=9.1e-05 Score=65.06 Aligned_cols=52 Identities=10% Similarity=0.026 Sum_probs=45.8
Q ss_pred CCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC
Q psy4398 211 PRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 211 ~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~ 262 (306)
+..+.+.+.++++++.+ ++|++..|||+|.++++++++.+ +.+|++++.||.
T Consensus 161 ~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~ 216 (223)
T TIGR01768 161 APEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVD 216 (223)
T ss_pred CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHH
Confidence 34456789999999999 99999999999999999999974 599999999873
No 154
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.03 E-value=0.00019 Score=64.46 Aligned_cols=199 Identities=13% Similarity=0.118 Sum_probs=117.6
Q ss_pred HHcCCCEEEecceechhhhh-hhhhhhcccccccccCCCCCceeeecC-CCCCCceEEEecCCCHHHHHHHHHHHhc-CC
Q psy4398 51 LDYGADLVYSEELVDHKLVK-TERKVNDLLNTIDFVDPLDGSVVFRTC-PREKNKIILQIGTADPERALEAAKKVEH-DV 127 (306)
Q Consensus 51 ~~~G~g~~~te~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~ 127 (306)
.++|++.++.|-....|... -.+.+- ..+. .+...+ .+-+.|+++|+.-+++. ++...+.+ |+
T Consensus 38 ~~~GvD~viveN~~d~P~~~~~~p~tv---a~m~--------~i~~~v~~~~~~p~GvnvL~nd~~---aal~iA~a~ga 103 (257)
T TIGR00259 38 EEGGVDAVMFENFFDAPFLKEVDPETV---AAMA--------VIAGQLKSDVSIPLGINVLRNDAV---AALAIAMAVGA 103 (257)
T ss_pred HhCCCCEEEEecCCCCCCcCCCCHHHH---HHHH--------HHHHHHHHhcCCCeeeeeecCCCH---HHHHHHHHhCC
Confidence 47899999998776555421 111110 0000 011111 12356899998877653 22334443 89
Q ss_pred CEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--CC--ChHHHHHHHHHHHHcC-CcEEEE
Q psy4398 128 AAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--FH--NEADTIALCKRLEACG-IIAIGV 202 (306)
Q Consensus 128 d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g~--~~~~~~~~a~~l~~~G-~d~i~v 202 (306)
|.|.+|.-|-.. ..+ .|.+..+...+.+.-+++.+ ++.++.-+.. +. ...+..+.++.....| +|+|++
T Consensus 104 ~FIRv~~~~g~~--~~d--~G~~~~~a~e~~r~r~~l~~--~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDaviv 177 (257)
T TIGR00259 104 KFIRVNVLTGVY--ASD--QGIIEGNAGELIRYKKLLGS--EVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVIL 177 (257)
T ss_pred CEEEEccEeeeE--ecc--cccccccHHHHHHHHHHcCC--CcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 999998655321 111 12344455555555444442 3343333322 12 1234677787777666 999999
Q ss_pred cccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh--hhhhccccCCCCCchH----HHHHHHHHh
Q psy4398 203 HGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYPVEKLPK----TILYAHCKY 274 (306)
Q Consensus 203 ~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~~p~~~~----~~l~~~~~~ 274 (306)
+|.... .+.+|+.++++++.. +.|++.+||++ ++++.++++. |+.+|+.+=.+-.|.. .-+++||++
T Consensus 178 tG~~TG----~~~d~~~l~~vr~~~~~~PvllggGvt-~eNv~e~l~~adGviVgS~~K~~G~~~n~~D~~rV~~Fm~~ 251 (257)
T TIGR00259 178 SGKTTG----TEVDLELLKLAKETVKDTPVLAGSGVN-LENVEELLSIADGVIVATTIKKDGVFNNFVDQARVSQFVEK 251 (257)
T ss_pred CcCCCC----CCCCHHHHHHHHhccCCCeEEEECCCC-HHHHHHHHhhCCEEEECCCcccCCccCCCcCHHHHHHHHHH
Confidence 986432 246899999999866 79999999986 8888888863 8899998753323222 256666664
No 155
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.02 E-value=0.00013 Score=63.35 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=84.4
Q ss_pred ceEEEec--CCCHHHHHHHHHHHhc-CCC--EEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEe
Q psy4398 103 KIILQIG--TADPERALEAAKKVEH-DVA--AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKI 176 (306)
Q Consensus 103 p~ivql~--g~~~~~~~~aa~~~~~-g~d--~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 176 (306)
.-.+|+. +.+.+++.+.++.+.+ |.. .+-+|-...... .-+..|-.+..+.. -++.+++.. +..|.+.+
T Consensus 28 ~~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~liin~~~~la~-~~~~~gvHl~~~~~----~~~~~r~~~~~~~ig~s~ 102 (201)
T PRK07695 28 VDYIHIREREKSAKELYEGVESLLKKGVPASKLIINDRVDIAL-LLNIHRVQLGYRSF----SVRSVREKFPYLHVGYSV 102 (201)
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEEECHHHHHH-HcCCCEEEeCcccC----CHHHHHHhCCCCEEEEeC
Confidence 4668887 4567777777776654 433 355552211000 00111222222211 123334333 23333332
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---h
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---C 251 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v 251 (306)
. + .+.++.+++.|+|++.++...... ....+..++.++++++.+++||++.||| +++++.++++.| +
T Consensus 103 ~---s----~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 103 H---S----LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred C---C----HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 2 2 334677888999999764432211 1122347899999999999999999999 899999999875 4
Q ss_pred hhccccCC
Q psy4398 252 AFLRNHYP 259 (306)
Q Consensus 252 ~vGrall~ 259 (306)
++|++++.
T Consensus 175 av~s~i~~ 182 (201)
T PRK07695 175 AVMSGIFS 182 (201)
T ss_pred EEEHHHhc
Confidence 89999975
No 156
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.01 E-value=1.6e-05 Score=70.68 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=68.3
Q ss_pred HHHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 184 DTIALCKRLEA-CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 184 ~~~~~a~~l~~-~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
+..++|+.+.+ .|+|.+++-+-.... ...+.++++++++.+.+++||...|||+|.++++.+++.|+ .+|++.+.
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~-~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~ 110 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAK-AQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQ 110 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccc-cCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhc
Confidence 56789999999 799999987654332 12346899999999999999999999999999999999875 89999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
||.+.+.
T Consensus 111 ~~~~l~~ 117 (234)
T PRK13587 111 DTDWLKE 117 (234)
T ss_pred CHHHHHH
Confidence 9855544
No 157
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.00 E-value=7.7e-05 Score=70.57 Aligned_cols=131 Identities=19% Similarity=0.106 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~ 190 (306)
++.++.+.++.+. +|+|.|.+|..... ..|++.- .++..+.+++ ++ .++||+++-- . +.+.++
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~-----~~h~~~~-~~~~~i~~~i---k~-~~ipVIaG~V--~----t~e~A~ 202 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVVS-----AEHVSKE-GEPLNLKEFI---YE-LDVPVIVGGC--V----TYTTAL 202 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchh-----hhccCCc-CCHHHHHHHH---HH-CCCCEEEeCC--C----CHHHHH
Confidence 3445566666554 59999999864311 2232211 1344443333 33 4789887221 2 245566
Q ss_pred HHHHcCCcEEEEcccCCCC----C-CC--CCCcHHHHHHHHhh-------C---CCcEEEecCCCCHHHHHHHHHhh---
Q psy4398 191 RLEACGIIAIGVHGRTKAE----R-PR--HRNRIEMIRTLTQH-------L---KIPVIANGGSKEIVDYGGVFSLN--- 250 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~~~~----~-~~--~p~~~~~v~~i~~~-------~---~ipvia~GGI~s~~~~~~~l~~~--- 250 (306)
.+.++|||+|.+ ++.... + .. +.+.+..+.+++++ . ++|||+.|||.+..|+.+++..|
T Consensus 203 ~l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~ 281 (368)
T PRK08649 203 HLMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADA 281 (368)
T ss_pred HHHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCe
Confidence 666799999977 332210 1 11 12234444444332 1 59999999999999999999875
Q ss_pred hhhccccCC
Q psy4398 251 CAFLRNHYP 259 (306)
Q Consensus 251 v~vGrall~ 259 (306)
+++|+.+..
T Consensus 282 Vm~Gs~fa~ 290 (368)
T PRK08649 282 VMLGSPLAR 290 (368)
T ss_pred ecccchhcc
Confidence 499999875
No 158
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.99 E-value=1.9e-05 Score=69.97 Aligned_cols=79 Identities=9% Similarity=0.201 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCC-CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPR-HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~-~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
+..++++.+.+. ++.+++-+.. +... .+.++++++++.+.+++||++.|||+|.+|++++++.++ .+|++.+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDld--ga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~- 106 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLD--GAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF- 106 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECc--chhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc-
Confidence 678999999998 9999985543 2222 235899999999999999999999999999999998754 8999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
||.+.+.
T Consensus 107 ~~~~l~~ 113 (228)
T PRK04128 107 DLEFLEK 113 (228)
T ss_pred CHHHHHH
Confidence 8854433
No 159
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.98 E-value=0.00012 Score=71.72 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=83.3
Q ss_pred HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEE-EeccCCChHHHHHHHHHHHHcCCcE
Q psy4398 122 KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSC-KIRVFHNEADTIALCKRLEACGIIA 199 (306)
Q Consensus 122 ~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~v-Kir~g~~~~~~~~~a~~l~~~G~d~ 199 (306)
.+++|+|.|-+....- .-..+.++++.+|+.. +.+|++ -+. +.+-++.|.++|+|+
T Consensus 235 Lv~aGvd~i~~D~a~~---------------~~~~~~~~i~~ik~~~p~~~v~agnv~-------t~~~a~~l~~aGad~ 292 (479)
T PRK07807 235 LLEAGVDVLVVDTAHG---------------HQEKMLEALRAVRALDPGVPIVAGNVV-------TAEGTRDLVEAGADI 292 (479)
T ss_pred HHHhCCCEEEEeccCC---------------ccHHHHHHHHHHHHHCCCCeEEeeccC-------CHHHHHHHHHcCCCE
Confidence 4456999988864431 1356788999999876 567766 333 467777888899999
Q ss_pred EEEcc------cCCCCCCCCCCcHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 200 IGVHG------RTKAERPRHRNRIEMIRTLTQ---HLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 200 i~v~~------~~~~~~~~~p~~~~~v~~i~~---~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
|-+-- .++.-.-.+.+.+..+.++++ ..++|||+-|||.+..++.+++..|+ ++|+.+..
T Consensus 293 v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag 364 (479)
T PRK07807 293 VKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAG 364 (479)
T ss_pred EEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhcc
Confidence 97521 122111123357888888877 45899999999999999999999864 99998753
No 160
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.97 E-value=0.00046 Score=62.38 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=90.4
Q ss_pred CCceEEEecCCCHH--------HHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 101 KNKIILQIGTADPE--------RALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 101 ~~p~ivql~g~~~~--------~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
+.++|..+...+|. +..+.|+..+. |+++|-+..- ...+|++ .+.++++++.+++|
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte-------~~~f~g~--------~~~l~~v~~~v~iP 113 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTD-------ERFFQGS--------LEYLRAARAAVSLP 113 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecc-------cccCCCC--------HHHHHHHHHhcCCC
Confidence 46788888654443 34677776665 8999966311 1334444 35567777778899
Q ss_pred EEEEecc------------C----------CChHHHHHHH--------------------HHHHHcCCcEEEEcccCCCC
Q psy4398 172 VSCKIRV------------F----------HNEADTIALC--------------------KRLEACGIIAIGVHGRTKAE 209 (306)
Q Consensus 172 v~vKir~------------g----------~~~~~~~~~a--------------------~~l~~~G~d~i~v~~~~~~~ 209 (306)
|..|--. | .+.++..++. +.+.+.|+|.|-+++|+...
T Consensus 114 vl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~ 193 (260)
T PRK00278 114 VLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKT 193 (260)
T ss_pred EEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCccc
Confidence 9987432 1 0111222222 23334455555555443221
Q ss_pred CCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC
Q psy4398 210 RPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 210 ~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~ 262 (306)
+ ..+++...++.+.+ ..|+|+.|||.+++++..+++.| +.+|++++..+.
T Consensus 194 -~--~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~d 248 (260)
T PRK00278 194 -F--EVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADD 248 (260)
T ss_pred -c--cCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence 1 23577888888876 36999999999999999999875 499999987544
No 161
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.97 E-value=0.00024 Score=63.63 Aligned_cols=186 Identities=14% Similarity=0.110 Sum_probs=108.9
Q ss_pred HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecC-CCCCCceEEEecCCCHHHHHHHHHHHhc-CCC
Q psy4398 51 LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC-PREKNKIILQIGTADPERALEAAKKVEH-DVA 128 (306)
Q Consensus 51 ~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d 128 (306)
.++|++.++.|-....|...... ...+..+.. +...+ ++-+.|+++|+.-+++.. +...+.+ |+|
T Consensus 39 ~~~GvDgiiveN~~D~Py~~~~~--~etvaaM~~--------i~~~v~~~~~~p~GVnvL~nd~~a---alaiA~A~ga~ 105 (254)
T PF03437_consen 39 EEGGVDGIIVENMGDVPYPKRVG--PETVAAMAR--------IAREVRREVSVPVGVNVLRNDPKA---ALAIAAATGAD 105 (254)
T ss_pred HHCCCCEEEEecCCCCCccCCCC--HHHHHHHHH--------HHHHHHHhCCCCEEeeeecCCCHH---HHHHHHHhCCC
Confidence 47899988888766554322100 000111111 11111 123579999988766532 2233443 889
Q ss_pred EEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C--CChHHHHHHHHHH-HHcCCcEEEEc
Q psy4398 129 AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F--HNEADTIALCKRL-EACGIIAIGVH 203 (306)
Q Consensus 129 ~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g--~~~~~~~~~a~~l-~~~G~d~i~v~ 203 (306)
.|.+|.-|-.. ..+ .|.+..+...+.+.-+.+... +.++..+.. + ....++.+.++.. +..++|+|.++
T Consensus 106 FIRv~~~~g~~--~~d--~G~~~~~a~e~~r~R~~l~a~--v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVt 179 (254)
T PF03437_consen 106 FIRVNVFVGAY--VTD--EGIIEGCAGELLRYRKRLGAD--VKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVT 179 (254)
T ss_pred EEEecCEEcee--ccc--CccccccHHHHHHHHHHcCCC--eEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEEC
Confidence 99988665321 112 123444444444443333222 344433332 1 1122344445444 77899999999
Q ss_pred ccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH--hhhhhccccCCC
Q psy4398 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS--LNCAFLRNHYPV 260 (306)
Q Consensus 204 ~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~--~~v~vGrall~~ 260 (306)
|..-. .+.+.+.+.++++.+++||+..+|++ .+++.+.++ .|+.+|+.+-.|
T Consensus 180 G~~TG----~~~~~~~l~~vr~~~~~PVlvGSGvt-~~Ni~~~l~~ADG~IVGS~~K~~ 233 (254)
T PF03437_consen 180 GKATG----EPPDPEKLKRVREAVPVPVLVGSGVT-PENIAEYLSYADGAIVGSYFKKD 233 (254)
T ss_pred CcccC----CCCCHHHHHHHHhcCCCCEEEecCCC-HHHHHHHHHhCCEEEEeeeeeeC
Confidence 86422 24588999999999999999999976 888988886 488999987543
No 162
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.97 E-value=0.00036 Score=63.36 Aligned_cols=121 Identities=14% Similarity=0.196 Sum_probs=78.8
Q ss_pred HHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc---ccccEEEEe-------ccCCChHHHHHHH
Q psy4398 120 AKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN---LSIPVSCKI-------RVFHNEADTIALC 189 (306)
Q Consensus 120 a~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~---~~~pv~vKi-------r~g~~~~~~~~~a 189 (306)
.+.++.|+|.|++.+-. |.. ..+...+.++++++. .++|+.+-. ....+.+...+.+
T Consensus 100 e~A~~~Gad~v~~~~~~----------g~~---~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~ 166 (267)
T PRK07226 100 EEAIKLGADAVSVHVNV----------GSE---TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAA 166 (267)
T ss_pred HHHHHcCCCEEEEEEec----------CCh---hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHH
Confidence 33445699998885221 110 012233344444433 378877742 1122334566778
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC--CHHHHHHHH----Hh---hhhhccccCCC
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK--EIVDYGGVF----SL---NCAFLRNHYPV 260 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~--s~~~~~~~l----~~---~v~vGrall~~ 260 (306)
+.+.+.|+|+|-.+ +. .+.+.++++.+..++||++.|||+ +.+++.+.+ +. |+.+||+++..
T Consensus 167 ~~a~e~GAD~vKt~-------~~--~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~ 237 (267)
T PRK07226 167 RVAAELGADIVKTN-------YT--GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQH 237 (267)
T ss_pred HHHHHHCCCEEeeC-------CC--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcC
Confidence 88889999999654 22 256888888888889999999999 877776665 44 55999999987
Q ss_pred CC
Q psy4398 261 EK 262 (306)
Q Consensus 261 p~ 262 (306)
+.
T Consensus 238 ~~ 239 (267)
T PRK07226 238 ED 239 (267)
T ss_pred CC
Confidence 64
No 163
>PLN02591 tryptophan synthase
Probab=97.97 E-value=0.00024 Score=63.73 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCc------ccccc--CChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGM------GAALL--STPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~------G~~l~--~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
.+.+.+.+.++.+. .|+|.|||-+.- +....||- --++. -+.+.+.++++.+|+...+|+.+-.- .+
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPf--SDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y--~N 88 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPY--SDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTY--YN 88 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC--CCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec--cc
Confidence 46788888888664 599999996432 21122210 00111 24567788899998777888654332 22
Q ss_pred h--H-HHHHHHHHHHHcCCcEEEEccc--------------------------CC----------CCC------------
Q psy4398 182 E--A-DTIALCKRLEACGIIAIGVHGR--------------------------TK----------AER------------ 210 (306)
Q Consensus 182 ~--~-~~~~~a~~l~~~G~d~i~v~~~--------------------------~~----------~~~------------ 210 (306)
. . ...++++.+.++|+|++.+-+- +. ...
T Consensus 89 ~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG 168 (250)
T PLN02591 89 PILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTG 168 (250)
T ss_pred HHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcC
Confidence 1 1 2445666666666666664321 10 000
Q ss_pred -CCC-CCc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 211 -PRH-RNR-IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 211 -~~~-p~~-~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
... +.. .+.++++++.+++||+..-||++.++++++++. |+.+|+++++
T Consensus 169 ~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 169 ARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred CCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 001 223 355899999899999999999999999999886 5699999854
No 164
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.94 E-value=0.00011 Score=71.95 Aligned_cols=120 Identities=13% Similarity=0.036 Sum_probs=81.0
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEA 194 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~ 194 (306)
...+...+++|+|.|-|...++ +++.+.++++.+++.. ++||++.-- . +.+-++.|.+
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~g~~--~----t~~~~~~l~~ 285 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHG---------------HQVKMISAIKAVRALDLGVPIVAGNV--V----SAEGVRDLLE 285 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCC---------------CcHHHHHHHHHHHHHCCCCeEEEecc--C----CHHHHHHHHH
Confidence 3333444556999998876553 3577889999999875 788888422 2 3566777788
Q ss_pred cCCcEEEEcccC------CCCCCCCCCc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 195 CGIIAIGVHGRT------KAERPRHRNR----IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 195 ~G~d~i~v~~~~------~~~~~~~p~~----~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
+|+|+|.|.... +.-...+.+. ++.+..+++. ++|||+.|||++..|+.+++..|+ ++|+.+
T Consensus 286 ~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA~~vm~g~~~ 360 (475)
T TIGR01303 286 AGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGASNVMVGSWF 360 (475)
T ss_pred hCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhh
Confidence 999999864321 1111112222 3333333433 899999999999999999999864 787765
No 165
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.94 E-value=0.00012 Score=63.45 Aligned_cols=143 Identities=16% Similarity=0.158 Sum_probs=85.5
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
+.++|...+..++.+.++.+.. |++.|++.+. + |. +..+..+-.++++.+++.++.|+.|.+-.. +
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~--------d--~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~-d- 68 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVM--------D--GH-FVPNLTFGPPVVKALRKHTDLPLDVHLMVE-N- 68 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecc--------c--CC-CCCccccCHHHHHHHHhhCCCcEEEEeeeC-C-
Confidence 4567788899899998887765 8999999421 1 00 001111223455666654444544333321 2
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCCCC-CC-
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERPRH-RN- 215 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~~~-p~- 215 (306)
..+.++.+.++|+|++++|+... .....+ ..
T Consensus 69 --~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~ 146 (211)
T cd00429 69 --PERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFI 146 (211)
T ss_pred --HHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccC
Confidence 23455666677788877664210 000011 11
Q ss_pred --cHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCC
Q psy4398 216 --RIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEK 262 (306)
Q Consensus 216 --~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~ 262 (306)
.++.+.++++.+ ++|+++.|||+. +++.++++. ++.+||+++..+.
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~~~ 202 (211)
T cd00429 147 PEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGSDD 202 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCCCC
Confidence 234556666665 389999999995 999999976 4599999986543
No 166
>KOG0623|consensus
Probab=97.93 E-value=3.8e-05 Score=70.22 Aligned_cols=95 Identities=21% Similarity=0.274 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
...++.+++++.|+..|.+.+...++...+ .++++++.+++.++|||||+.|-..++..+++++. -++++.+++..
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DGsn~G-yDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaLaAGiFHR 520 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDGSNKG-YDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAALAAGIFHR 520 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCCCCCC-cchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhhhccceec
Confidence 378999999999999999998888776665 59999999999999999999999999999999975 34888888876
Q ss_pred CCchHHHHHHHHHhcCCCC
Q psy4398 261 EKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 261 p~~~~~~l~~~~~~~g~~~ 279 (306)
-.++-..+++||.++++.+
T Consensus 521 ~e~~i~dVKEyL~eh~i~V 539 (541)
T KOG0623|consen 521 KEVPIQDVKEYLQEHRIEV 539 (541)
T ss_pred CccchHHHHHHHHhhceee
Confidence 6777779999999998653
No 167
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.93 E-value=0.00022 Score=62.88 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=95.3
Q ss_pred EEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEecc
Q psy4398 105 ILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIRV 178 (306)
Q Consensus 105 ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir~ 178 (306)
..+|...+...+.+-.+++++ |+|.+-+.+- .|| .-+--++++++|+. ++.|+.|=+=.
T Consensus 3 ~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn---------------~tfg~~~i~~i~~~~~~~~~dvHLMv 67 (220)
T PRK08883 3 APSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPN---------------LTFGAPICKALRDYGITAPIDVHLMV 67 (220)
T ss_pred chhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCc---------------cccCHHHHHHHHHhCCCCCEEEEecc
Confidence 356777788888888887875 8888666432 344 22234567888876 57887777653
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCCCC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERPRH 213 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~~~ 213 (306)
++...+++.+.++|+|.|++|.-.. ..++.+
T Consensus 68 ----~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgG 143 (220)
T PRK08883 68 ----KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGG 143 (220)
T ss_pred ----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCC
Confidence 2356677888889999999875310 111111
Q ss_pred ----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 214 ----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 214 ----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
|..++-++++++.. ++||.+-|||+ .+++.++.++|+ .+|++++..+.
T Consensus 144 q~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 144 QSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred ceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 23466777777765 38999999998 899999998865 99999986443
No 168
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.91 E-value=0.00026 Score=69.62 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~ 190 (306)
+++.+..+...++.|+|.|-++... .+...+.+.++.+++.. +.||.++-- .+ .+-++
T Consensus 226 ~~~~~e~a~~L~~agvdvivvD~a~---------------g~~~~vl~~i~~i~~~~p~~~vi~g~v--~t----~e~a~ 284 (486)
T PRK05567 226 GADNEERAEALVEAGVDVLVVDTAH---------------GHSEGVLDRVREIKAKYPDVQIIAGNV--AT----AEAAR 284 (486)
T ss_pred CcchHHHHHHHHHhCCCEEEEECCC---------------CcchhHHHHHHHHHhhCCCCCEEEecc--CC----HHHHH
Confidence 3444555555556799988664221 12244667788888887 788888544 33 45566
Q ss_pred HHHHcCCcEEEEcccC------CCCCCCCCCcHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 191 RLEACGIIAIGVHGRT------KAERPRHRNRIEMIRTLTQHL---KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~------~~~~~~~p~~~~~v~~i~~~~---~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.+.++|+|+|.+.... +.-...+.+.++.+.++++.. ++|||+.|||++..|+.+++..|+ ++|+++-
T Consensus 285 ~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a 364 (486)
T PRK05567 285 ALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLA 364 (486)
T ss_pred HHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccc
Confidence 7778999999863211 111122334677777776643 799999999999999999999865 8898863
No 169
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.88 E-value=0.00057 Score=59.61 Aligned_cols=126 Identities=14% Similarity=0.181 Sum_probs=91.3
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C-CChHHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F-HNEADTIALCKRL 192 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g-~~~~~~~~~a~~l 192 (306)
..++...++.|+|.||+=+. +|.....+.+.+.+=|+++++.++-++.+|+=+ + .+.++....++.+
T Consensus 80 ~~Ea~~ai~~GAdEiDmVin----------ig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~ 149 (228)
T COG0274 80 AAEAREAIENGADEIDMVIN----------IGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIA 149 (228)
T ss_pred HHHHHHHHHcCCCeeeeeee----------HHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHH
Confidence 44444455679999987321 233444578888888999999886545666543 2 4566778999999
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
.++|+|+|--+ .+...+.+.++.++-+++.+ ++.|=++|||+|.+++..+++.|. -+|+
T Consensus 150 ~~aGAdFVKTS----TGf~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~RiGt 211 (228)
T COG0274 150 IEAGADFVKTS----TGFSAGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGATRIGT 211 (228)
T ss_pred HHhCCCEEEcC----CCCCCCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhHHHhcc
Confidence 99999999643 22334456778888888887 488999999999999999999865 3443
No 170
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.87 E-value=0.0047 Score=56.95 Aligned_cols=205 Identities=13% Similarity=0.067 Sum_probs=123.6
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPR 99 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 99 (306)
-+..++|.+|..|+++--+--.+...++......|+.++..-.-..+ . ......+++ +.++.
T Consensus 73 ~~~~i~~~~~~sRl~~Gtg~y~s~~~~~~a~~asg~e~vTva~rr~~-~--~~~~~~~~~---------------~~~~~ 134 (326)
T PRK11840 73 DSWTVAGKTFSSRLLVGTGKYKDFEETAAAVEASGAEIVTVAVRRVN-V--SDPGAPMLT---------------DYIDP 134 (326)
T ss_pred CCeEECCEEEecceeEecCCCCCHHHHHHHHHHhCCCEEEEEEEeec-C--cCCCcchHH---------------Hhhhh
Confidence 46789999999999998887555555666666678766544321111 0 000111111 11111
Q ss_pred CCCceEEEe-cCCCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEE
Q psy4398 100 EKNKIILQI-GTADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSC 174 (306)
Q Consensus 100 ~~~p~ivql-~g~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~v 174 (306)
.+..+..|- ++.+.++....|+.+.+ |-+-|-|..--.+ . .++.|+.. .+++.+.-+ ++-+++
T Consensus 135 ~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~------~---~llpd~~~---~v~aa~~L~~~Gf~v~~ 202 (326)
T PRK11840 135 KKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDA------K---TLYPDMVE---TLKATEILVKEGFQVMV 202 (326)
T ss_pred cCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCC------C---CcccCHHH---HHHHHHHHHHCCCEEEE
Confidence 222333443 35788999999998875 5676666433211 1 23334443 444444332 555666
Q ss_pred EeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---h
Q psy4398 175 KIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---C 251 (306)
Q Consensus 175 Kir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v 251 (306)
-+. .+ ...|+++++.|+-++--- ...-+.-.+..+-+.++.+.+..++||+.-+||.+++|+..+++.| +
T Consensus 203 yc~--~d----~~~a~~l~~~g~~avmPl-~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgV 275 (326)
T PRK11840 203 YCS--DD----PIAAKRLEDAGAVAVMPL-GAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGV 275 (326)
T ss_pred EeC--CC----HHHHHHHHhcCCEEEeec-cccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 666 33 577888999999433321 1111111222366888999988999999999999999999999975 4
Q ss_pred hhccccCC--CC
Q psy4398 252 AFLRNHYP--VE 261 (306)
Q Consensus 252 ~vGrall~--~p 261 (306)
.+.+++.. ||
T Consensus 276 L~nSaIa~a~dP 287 (326)
T PRK11840 276 LMNTAIAEAKNP 287 (326)
T ss_pred EEcceeccCCCH
Confidence 77777754 55
No 171
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.87 E-value=0.0004 Score=61.48 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=85.5
Q ss_pred HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------------------CCCh-
Q psy4398 122 KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------------------FHNE- 182 (306)
Q Consensus 122 ~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------------------g~~~- 182 (306)
.++.|.|+|.+ ||+..-..+.+.++++++|+ .++|+..-.+. +.++
T Consensus 28 ~~~~gtdai~v--------------GGS~~vt~~~~~~~v~~ik~-~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~ 92 (232)
T PRK04169 28 ICESGTDAIIV--------------GGSDGVTEENVDELVKAIKE-YDLPVILFPGNIEGISPGADAYLFPSVLNSRNPY 92 (232)
T ss_pred HHhcCCCEEEE--------------cCCCccchHHHHHHHHHHhc-CCCCEEEeCCCccccCcCCCEEEEEEEecCCCcc
Confidence 34459999988 44443456778889999988 78888775442 0111
Q ss_pred ---HHHHHHHHHHHHcCCc-----EEEEcccC-------------------------------------CCCCCCCCCcH
Q psy4398 183 ---ADTIALCKRLEACGII-----AIGVHGRT-------------------------------------KAERPRHRNRI 217 (306)
Q Consensus 183 ---~~~~~~a~~l~~~G~d-----~i~v~~~~-------------------------------------~~~~~~~p~~~ 217 (306)
..-.+.+..+...|.. ++++.... .......+.+.
T Consensus 93 ~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~~~ 172 (232)
T PRK04169 93 WIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPVPP 172 (232)
T ss_pred hHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCCCH
Confidence 1224455555555553 33332110 01122345678
Q ss_pred HHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC
Q psy4398 218 EMIRTLTQHLKI-PVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 218 ~~v~~i~~~~~i-pvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~ 262 (306)
++++++++.++. |++..|||+|.++++++++.+ +.+|++++.||.
T Consensus 173 e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 173 EMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred HHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 999999999988 999999999999999988875 599999999875
No 172
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.86 E-value=0.0033 Score=54.93 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=123.2
Q ss_pred cccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCC
Q psy4398 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPRE 100 (306)
Q Consensus 21 ~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (306)
+.+|++-+|..|+++--+--.+...+....+..|..++..-+-..+- . .....+++. .+...
T Consensus 7 ~l~i~g~~f~SRLllGTgky~s~~~~~~av~asg~~ivTvAlRR~~~-~--~~~~~~~l~---------------~l~~~ 68 (262)
T COG2022 7 MLTIAGKTFDSRLLLGTGKYPSPAVLAEAVRASGSEIVTVALRRVNA-T--RPGGDGILD---------------LLIPL 68 (262)
T ss_pred ceeecCeeeeeeEEEecCCCCCHHHHHHHHHhcCCceEEEEEEeecc-c--CCCcchHHH---------------Hhhhc
Confidence 46789999999999988774444446666666786665443322111 0 000111111 11112
Q ss_pred CCceEEEe-cCCCHHHHHHHHHHHhc--CCCEEEEcc-CCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 101 KNKIILQI-GTADPERALEAAKKVEH--DVAAIDINM-GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 101 ~~p~ivql-~g~~~~~~~~aa~~~~~--g~d~veln~-gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
+..+..|- ++.+.++....|+.+.+ +-+-|-|.. +++. .++-|+-.+.+-.+.+.+. ++-|..-+
T Consensus 69 ~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~etl~Aae~Lv~e-GF~VlPY~ 137 (262)
T COG2022 69 GVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPIETLKAAEQLVKE-GFVVLPYT 137 (262)
T ss_pred CcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCc----------ccCCChHHHHHHHHHHHhC-CCEEeecc
Confidence 22333332 35788999999998876 566655542 3322 2444444333333333222 55566666
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hh
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AF 253 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~v 253 (306)
+ .| .-+|++|++.||..+-=-+- +-+.-.++.+-..++.|.+..++|||.--||.++.|+-.+++.|+ .+
T Consensus 138 ~--dD----~v~arrLee~GcaavMPl~a-PIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 138 T--DD----PVLARRLEEAGCAAVMPLGA-PIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred C--CC----HHHHHHHHhcCceEeccccc-cccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 5 33 46889999999988852221 122233455667888888889999999999999999999999754 55
Q ss_pred cccc--CCCC
Q psy4398 254 LRNH--YPVE 261 (306)
Q Consensus 254 Gral--l~~p 261 (306)
.+|+ -.||
T Consensus 211 NTAiA~A~DP 220 (262)
T COG2022 211 NTAIARAKDP 220 (262)
T ss_pred hhHhhccCCh
Confidence 5554 2577
No 173
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.86 E-value=0.00037 Score=61.76 Aligned_cols=136 Identities=7% Similarity=0.086 Sum_probs=88.2
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccC-CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMG-CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~g-cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
.++-+-|.-.+|+++.+.+ .+.|+|+|-+|++ +.. +...+.++.+++. +. .+-+...+
T Consensus 66 ~~~~vhlmv~~p~d~~~~~--~~~gad~v~vH~~q~~~----------------d~~~~~~~~i~~~-g~--~iGls~~~ 124 (229)
T PLN02334 66 APLDCHLMVTNPEDYVPDF--AKAGASIFTFHIEQAST----------------IHLHRLIQQIKSA-GM--KAGVVLNP 124 (229)
T ss_pred CcEEEEeccCCHHHHHHHH--HHcCCCEEEEeeccccc----------------hhHHHHHHHHHHC-CC--eEEEEECC
Confidence 4567788888999987666 4569999999876 211 2234556666543 32 23333222
Q ss_pred ChHHHHHHHHHHHHcC-CcEEEE---cccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---h
Q psy4398 181 NEADTIALCKRLEACG-IIAIGV---HGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---A 252 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G-~d~i~v---~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~ 252 (306)
.+..+.++.+.+.| +|++.+ +.....+. ..+..++.++++++.. ++||.+-||| +.+++.++++.|+ .
T Consensus 125 --~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~-~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~aGad~vv 200 (229)
T PLN02334 125 --GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQS-FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEAGANVIV 200 (229)
T ss_pred --CCCHHHHHHHHhccCCCEEEEEEEecCCCccc-cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHcCCCEEE
Confidence 23345555555564 999954 43322222 2244567788888875 6899999999 5899999998754 9
Q ss_pred hccccCCCCC
Q psy4398 253 FLRNHYPVEK 262 (306)
Q Consensus 253 vGrall~~p~ 262 (306)
+|++++..+.
T Consensus 201 vgsai~~~~d 210 (229)
T PLN02334 201 AGSAVFGAPD 210 (229)
T ss_pred EChHHhCCCC
Confidence 9999986543
No 174
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00099 Score=59.81 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCc-----cc-cc--cCChHHHHHHHHHHHhc-ccccEEEEeccC
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGM-----GA-AL--LSTPDIACNILTTLISN-LSIPVSCKIRVF 179 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~-----G~-~l--~~~~~~~~eiv~~v~~~-~~~pv~vKir~g 179 (306)
-.+++...++.+.+. .|+|.+||-+. .+....||- +. ++ ....+.+.++++.+|+. ..+|+.+=.-..
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELGvP--fSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~N 104 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELGVP--FSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYN 104 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEecCC--CCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 347788999988765 59999999543 222222210 00 11 12567788999999855 678877654421
Q ss_pred CCh-HHHHHHHHHHHHcCCcEEEEcc-------------------------cC-C----------CCCC-----------
Q psy4398 180 HNE-ADTIALCKRLEACGIIAIGVHG-------------------------RT-K----------AERP----------- 211 (306)
Q Consensus 180 ~~~-~~~~~~a~~l~~~G~d~i~v~~-------------------------~~-~----------~~~~----------- 211 (306)
+-. -...++.+.+.++|+|++.+-+ .+ . ..++
T Consensus 105 pi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG 184 (265)
T COG0159 105 PIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTG 184 (265)
T ss_pred HHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccC
Confidence 100 1234556666666666666422 11 0 0010
Q ss_pred -CCC---CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCC
Q psy4398 212 -RHR---NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYP 259 (306)
Q Consensus 212 -~~p---~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~ 259 (306)
..+ .--+.++++++..++||...=||.++++++++.+. |+.+|+|+..
T Consensus 185 ~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~ADGVIVGSAiV~ 238 (265)
T COG0159 185 ARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEAADGVIVGSAIVK 238 (265)
T ss_pred CCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHhCCeEEEcHHHHH
Confidence 111 12467899999999999999999999999999986 7899999864
No 175
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.82 E-value=5.8e-05 Score=67.25 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++++.+.+.|++.+++-..+.... ....+++.++++.+.+++|++.+|||+|.++++.+++.|+ .+|+.++.+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~-~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~ 111 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFE-GERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVEN 111 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhc-CCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 578899999999999998865442211 1235788999999999999999999999999999998864 999999988
Q ss_pred CCc
Q psy4398 261 EKL 263 (306)
Q Consensus 261 p~~ 263 (306)
|.+
T Consensus 112 ~~~ 114 (241)
T PRK13585 112 PEI 114 (241)
T ss_pred hHH
Confidence 743
No 176
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.82 E-value=1.9e-05 Score=70.06 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+++.|++.+++-+-.... ...+.++++++++.+.+.+||...|||+|.++++.+++.|+ .+|++.+.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~-~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAK-EGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHC-CTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcc-cCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 457899999999999999986543211 11245889999999999999999999999999999999876 99999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
||.+.+.
T Consensus 108 ~~~~l~~ 114 (229)
T PF00977_consen 108 DPELLEE 114 (229)
T ss_dssp CCHHHHH
T ss_pred chhHHHH
Confidence 9955433
No 177
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.82 E-value=8.5e-05 Score=66.07 Aligned_cols=86 Identities=13% Similarity=0.153 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+.+.|++.+++-+-.... ..+.+++.++++.+.+.+|+...|||+|.++++.+++.|+ .+|+..+.
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~--~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~ 112 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIM--GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLP 112 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcccc--CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceecc
Confidence 368899999999999999987765432 3456899999999999999999999999999999999874 88999887
Q ss_pred CCCchHHHHHHH
Q psy4398 260 VEKLPKTILYAH 271 (306)
Q Consensus 260 ~p~~~~~~l~~~ 271 (306)
| .+.+..++.|
T Consensus 113 ~-~~~~~~~~~~ 123 (233)
T cd04723 113 S-DDDEDRLAAL 123 (233)
T ss_pred c-hHHHHHHHhc
Confidence 7 5554444443
No 178
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.81 E-value=0.00016 Score=68.25 Aligned_cols=130 Identities=16% Similarity=0.107 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHH
Q psy4398 113 PERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKR 191 (306)
Q Consensus 113 ~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~ 191 (306)
+..+.+.++.+. +|+|.|-+|.-. +...|.+. ..++..+.++++ ..++||++.-- .+ .+.++.
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgrt-----~~q~~~sg-~~~p~~l~~~i~----~~~IPVI~G~V--~t----~e~A~~ 204 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGTL-----VSAEHVST-SGEPLNLKEFIG----ELDVPVIAGGV--ND----YTTALH 204 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEeccc-----hhhhccCC-CCCHHHHHHHHH----HCCCCEEEeCC--CC----HHHHHH
Confidence 445667777665 599999998332 22233111 124554444443 35789987221 23 344555
Q ss_pred HHHcCCcEEEEcc-cCCCCC-C--CCCCcHHHHHHHHh-------hCC---CcEEEecCCCCHHHHHHHHHhhh---hhc
Q psy4398 192 LEACGIIAIGVHG-RTKAER-P--RHRNRIEMIRTLTQ-------HLK---IPVIANGGSKEIVDYGGVFSLNC---AFL 254 (306)
Q Consensus 192 l~~~G~d~i~v~~-~~~~~~-~--~~p~~~~~v~~i~~-------~~~---ipvia~GGI~s~~~~~~~l~~~v---~vG 254 (306)
+.+.|+|+|.+.. ...... . .+.+....+.++++ ..+ +|||+.|||.+..|+.+++..|+ ++|
T Consensus 205 ~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 205 LMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLG 284 (369)
T ss_pred HHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeH
Confidence 5569999998421 111111 1 11223334444332 233 89999999999999999998754 777
Q ss_pred cccC
Q psy4398 255 RNHY 258 (306)
Q Consensus 255 rall 258 (306)
+++.
T Consensus 285 t~~a 288 (369)
T TIGR01304 285 SPLA 288 (369)
T ss_pred HHHH
Confidence 7765
No 179
>PRK06801 hypothetical protein; Provisional
Probab=97.81 E-value=0.00082 Score=61.47 Aligned_cols=144 Identities=10% Similarity=0.128 Sum_probs=89.4
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|++++|-|...- ..+.+.++.||+.|.+-.+ ...+.++.+...++++..+. .+++|-.-+..
T Consensus 73 ~~vpV~lHlDH~~~~--e~i~~Ai~~GftSVm~D~S-----------~l~~eeNi~~t~~v~~~a~~-~gv~VE~ElG~v 138 (286)
T PRK06801 73 HDIPVVLNLDHGLHF--EAVVRALRLGFSSVMFDGS-----------TLEYEENVRQTREVVKMCHA-VGVSVEAELGAV 138 (286)
T ss_pred CCCCEEEECCCCCCH--HHHHHHHHhCCcEEEEcCC-----------CCCHHHHHHHHHHHHHHHHH-cCCeEEeecCcc
Confidence 467888888665422 2222334468888888422 22344556666666666544 35555444443
Q ss_pred CC-C------------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecC--CCCHH
Q psy4398 179 FH-N------------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGG--SKEIV 241 (306)
Q Consensus 179 g~-~------------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GG--I~s~~ 241 (306)
|. + ..+..+..+..++.|+|+|-+.=.+..+.|.+ +.+++.++++++.+++|++..|| |. .+
T Consensus 139 gg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e 217 (286)
T PRK06801 139 GGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DA 217 (286)
T ss_pred cCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HH
Confidence 10 0 11123333444478999999854444444533 36899999999999999999999 65 57
Q ss_pred HHHHHHHhhh---hhccccC
Q psy4398 242 DYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 242 ~~~~~l~~~v---~vGrall 258 (306)
++.++++.|+ -++|++.
T Consensus 218 ~~~~~i~~Gi~KINv~T~~~ 237 (286)
T PRK06801 218 DFRRAIELGIHKINFYTGMS 237 (286)
T ss_pred HHHHHHHcCCcEEEehhHHH
Confidence 7888888865 5555543
No 180
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.81 E-value=0.00039 Score=60.86 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=81.8
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
+.++|...++..+.+.++.+.+ |++.|++-.. | | .+..+..+..+.++.+++.+..++.+-+-..
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~--------d--~-~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--- 71 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVM--------D--G-HFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--- 71 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCc--------c--C-CcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 6678888999999998888765 9999999421 1 1 1111212334556666655443433322210
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC-------------------------------------C--------CCCCC-CCc
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK-------------------------------------A--------ERPRH-RNR 216 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~-------------------------------------~--------~~~~~-p~~ 216 (306)
+..+..+.+.++|+|++++|+... + .+..+ ...
T Consensus 72 -d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~ 150 (220)
T PRK05581 72 -NPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFI 150 (220)
T ss_pred -CHHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCccccc
Confidence 123333444567777776664210 0 00011 112
Q ss_pred ---HHHHHHHHhhCC-----CcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCC
Q psy4398 217 ---IEMIRTLTQHLK-----IPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEK 262 (306)
Q Consensus 217 ---~~~v~~i~~~~~-----ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~ 262 (306)
++.+.++++.++ .+|...|||+. +++.++++. ++.+|++++.++.
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 151 PEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPD 206 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCC
Confidence 334455554432 23557799987 899999876 4599999997664
No 181
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.80 E-value=0.00027 Score=69.63 Aligned_cols=123 Identities=14% Similarity=0.112 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~ 195 (306)
+..+...+++|+|.|++. +.+ ...+...+.++.+++.++.++.|+-..-. +.+-++.+.++
T Consensus 244 ~~ra~~Lv~aGvd~i~vd--~a~-------------g~~~~~~~~i~~ir~~~~~~~~V~aGnV~----t~e~a~~li~a 304 (502)
T PRK07107 244 AERVPALVEAGADVLCID--SSE-------------GYSEWQKRTLDWIREKYGDSVKVGAGNVV----DREGFRYLAEA 304 (502)
T ss_pred HHHHHHHHHhCCCeEeec--Ccc-------------cccHHHHHHHHHHHHhCCCCceEEecccc----CHHHHHHHHHc
Confidence 344444555699999996 222 12344578889999887655666665212 34556666789
Q ss_pred CCcEEEEc--cc----CCCCCCCCCCcHHHHHHHHhhC-------C--CcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 196 GIIAIGVH--GR----TKAERPRHRNRIEMIRTLTQHL-------K--IPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 196 G~d~i~v~--~~----~~~~~~~~p~~~~~v~~i~~~~-------~--ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
|+|+|.+. +. ++...-.+++.+..+.+++++. + +|||+-|||++.-|+-+++..|+ ++||.+
T Consensus 305 GAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ 384 (502)
T PRK07107 305 GADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYF 384 (502)
T ss_pred CCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhh
Confidence 99999872 22 2222334455666776666643 4 89999999999999999998764 899875
No 182
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.79 E-value=0.0015 Score=62.28 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=101.5
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
.++++-|--.++..+. ++.+ +.|+|.+-+|...+ .+.+.+.++++++. ++-+.+-+-
T Consensus 227 ~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTVH~ea~----------------~~ti~~ai~~akk~-GikvgVD~l--- 284 (391)
T PRK13307 227 AFIVADLKTLDTGNLE--ARMAADATADAVVISGLAP----------------ISTIEKAIHEAQKT-GIYSILDML--- 284 (391)
T ss_pred CeEEEEecccChhhHH--HHHHHhcCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCEEEEEEc---
Confidence 4677888777777775 3334 45999999985432 23456677777664 544444211
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcc-cCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHG-RTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~-~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
+..+..+.++.+ ..++|.+.+|. ...+ .. ...|+-++++++.. +++|...|||+ .+++.++++.|+ .+||
T Consensus 285 np~tp~e~i~~l-~~~vD~Vllht~vdp~--~~-~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~aGADivVVGs 359 (391)
T PRK13307 285 NVEDPVKLLESL-KVKPDVVELHRGIDEE--GT-EHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKAGADILVVGR 359 (391)
T ss_pred CCCCHHHHHHHh-hCCCCEEEEccccCCC--cc-cchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeH
Confidence 223455666666 67999999985 3333 22 23677888888754 78999999998 888999988765 9999
Q ss_pred ccCCCCCchHHHHHHHHHhcCCCCCcce
Q psy4398 256 NHYPVEKLPKTILYAHCKYKRFEVPKYE 283 (306)
Q Consensus 256 all~~p~~~~~~l~~~~~~~g~~~~~~~ 283 (306)
+++..+. ++..++++.+..+.+.++|+
T Consensus 360 aIf~a~D-p~~aak~l~~~i~~~~~~~~ 386 (391)
T PRK13307 360 AITKSKD-VRRAAEDFLNKLKPDIDQFR 386 (391)
T ss_pred HHhCCCC-HHHHHHHHHHhhccCchhhe
Confidence 9986443 44445555555555555443
No 183
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.79 E-value=0.0006 Score=61.13 Aligned_cols=136 Identities=10% Similarity=0.060 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec--cC-CChH-HHHHHHH
Q psy4398 115 RALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR--VF-HNEA-DTIALCK 190 (306)
Q Consensus 115 ~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir--~g-~~~~-~~~~~a~ 190 (306)
...++...++.|+|.||+=+. +|.....+.+.+.+-++++++.++-++.+|+= .+ .+.+ .....++
T Consensus 85 K~~Ea~~Ai~~GAdEiD~Vin----------ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~ 154 (257)
T PRK05283 85 ALAETRAAIAYGADEVDVVFP----------YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASE 154 (257)
T ss_pred HHHHHHHHHHcCCCEEeeecc----------HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHH
Confidence 345555666679999998322 34444457788888888888776423444443 23 3444 4788999
Q ss_pred HHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-------CCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCCC
Q psy4398 191 RLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-------KIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVEK 262 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-------~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p~ 262 (306)
.+.++|+|+|--+.. ...+.+..+.++.+++.+ ++-|=++|||+|.+++.++++.+- .+|..-+. |.
T Consensus 155 ~a~~aGADFVKTSTG----f~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~lg~~~~~-~~ 229 (257)
T PRK05283 155 IAIKAGADFIKTSTG----KVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEILGADWAD-AR 229 (257)
T ss_pred HHHHhCCCEEEcCCC----CCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHhChhhcC-cc
Confidence 999999999975322 222334556555555553 477999999999999999999765 66665443 63
Q ss_pred chH
Q psy4398 263 LPK 265 (306)
Q Consensus 263 ~~~ 265 (306)
+-+
T Consensus 230 ~fR 232 (257)
T PRK05283 230 HFR 232 (257)
T ss_pred cEe
Confidence 333
No 184
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.79 E-value=0.00066 Score=60.18 Aligned_cols=140 Identities=12% Similarity=0.174 Sum_probs=96.4
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEe
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKI 176 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 176 (306)
.+.++|.+.++..+.+-.+.++. |+|.+-+.+- +|+ ..+=.++++++++.. ++|+.+++
T Consensus 8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn---------------~~~G~~~v~~lr~~~~~~~lDvHL 72 (228)
T PTZ00170 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPN---------------LSFGPPVVKSLRKHLPNTFLDCHL 72 (228)
T ss_pred EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC---------------cCcCHHHHHHHHhcCCCCCEEEEE
Confidence 46678889999899998888875 8888666543 343 222245678888776 88999998
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------C----------------------------------
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------E---------------------------------- 209 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~---------------------------------- 209 (306)
-. .+....++.+.++|+|.+++|..... +
T Consensus 73 m~----~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~ 148 (228)
T PTZ00170 73 MV----SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVE 148 (228)
T ss_pred CC----CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcc
Confidence 82 34556668888899999998853200 0
Q ss_pred -CCCC----CCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 210 -RPRH----RNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 210 -~~~~----p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
+..+ +..++-++++++.. ...|...|||+ .+++..+.+.|+ .+||+++..+.
T Consensus 149 pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 149 PGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAADAGANVIVAGSSIFKAKD 209 (228)
T ss_pred cCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHHHcCCCEEEEchHHhCCCC
Confidence 0000 11245566666655 46788889987 678888888765 99999987554
No 185
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.76 E-value=9.9e-05 Score=65.94 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+.+.|++.+++-+-.... ...+.+++++++|.+.+ .|+...|||+|.++++.+++.|+ .+|++.+.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~-~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~ 107 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAI-ENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcc-cCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhC
Confidence 468999999999999999987655321 12245889999999988 79999999999999999999876 89999999
Q ss_pred CCCch
Q psy4398 260 VEKLP 264 (306)
Q Consensus 260 ~p~~~ 264 (306)
||.+.
T Consensus 108 ~p~~l 112 (241)
T PRK14114 108 DPSFL 112 (241)
T ss_pred CHHHH
Confidence 99543
No 186
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.75 E-value=0.00012 Score=65.11 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++|+.+.+.|++.+++-+-.... ..+.+++.++++.+....|+-..|||+|.++++.+++.|+ .+|+..+.|
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 68899999999999999987655432 3345789999999854359999999999999999999876 999999999
Q ss_pred CCchHH
Q psy4398 261 EKLPKT 266 (306)
Q Consensus 261 p~~~~~ 266 (306)
|.+.+.
T Consensus 109 p~~~~~ 114 (232)
T PRK13586 109 FNLFHD 114 (232)
T ss_pred HHHHHH
Confidence 854433
No 187
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.74 E-value=0.00092 Score=57.48 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=87.3
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc----cccCCc-----cccccCChHHH--------------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF----SLTGGM-----GAALLSTPDIA-------------- 157 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~----~~~~~~-----G~~l~~~~~~~-------------- 157 (306)
.|++.=+.+.++++..+.++.+.+ |++.||+.+..|... ..++.| |+...-+.+.+
T Consensus 4 ~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p 83 (190)
T cd00452 4 QPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP 83 (190)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence 356666778889888888887754 899999976654210 001111 11111111111
Q ss_pred ---HHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEE
Q psy4398 158 ---CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIA 233 (306)
Q Consensus 158 ---~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia 233 (306)
.++++..++ .+.++.+-++ +.+-+..+.++|+|++-+... .+...++++.+++.+ ++|+++
T Consensus 84 ~~~~~~~~~~~~-~~~~~i~gv~-------t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~~~p~~a 148 (190)
T cd00452 84 GLDPEVVKAANR-AGIPLLPGVA-------TPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFPQVRFMP 148 (190)
T ss_pred CCCHHHHHHHHH-cCCcEECCcC-------CHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCCCCeEEE
Confidence 223333322 2444444333 223345556799999998532 123457888888887 699999
Q ss_pred ecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 234 NGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.||| +.+++.+.++.|+ .++++++
T Consensus 149 ~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 149 TGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred eCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 9999 8999999999865 7888877
No 188
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.74 E-value=0.00059 Score=62.16 Aligned_cols=144 Identities=10% Similarity=0.113 Sum_probs=96.8
Q ss_pred CCCCceEEEecCC-CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 99 REKNKIILQIGTA-DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 99 ~~~~p~ivql~g~-~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
+...|+.+.|-+. +.+... +.++.||+.|.+..|. -.+.++.+...++++.... .+++|-.-+.
T Consensus 72 ~~~vPV~lHLDH~~~~e~i~---~Ai~~GftSVM~DgS~-----------l~~eeNi~~T~~vve~Ah~-~gv~VEaElG 136 (283)
T PRK07998 72 KMDVPVSLHLDHGKTFEDVK---QAVRAGFTSVMIDGAA-----------LPFEENIAFTKEAVDFAKS-YGVPVEAELG 136 (283)
T ss_pred HCCCCEEEECcCCCCHHHHH---HHHHcCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEec
Confidence 3467888888665 333333 3345699999885331 2345677788888877765 5777766655
Q ss_pred c--CCC---------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhCCCcEEEecCCCCH-HHHH
Q psy4398 178 V--FHN---------EADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHLKIPVIANGGSKEI-VDYG 244 (306)
Q Consensus 178 ~--g~~---------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~~ipvia~GGI~s~-~~~~ 244 (306)
. |.. ..+..+..+-+++.|+|.+-+.=.+..+.|.+| .+++.+++|++.+++|++..||-... ++.+
T Consensus 137 ~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~ 216 (283)
T PRK07998 137 AILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILR 216 (283)
T ss_pred cCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHH
Confidence 4 110 134555666677889999987655555555443 47899999999999999999997765 6677
Q ss_pred HHHHhhh---hhcccc
Q psy4398 245 GVFSLNC---AFLRNH 257 (306)
Q Consensus 245 ~~l~~~v---~vGral 257 (306)
++++.|+ -++|.+
T Consensus 217 ~ai~~Gi~KiNi~Tel 232 (283)
T PRK07998 217 SFVNYKVAKVNIASDL 232 (283)
T ss_pred HHHHcCCcEEEECHHH
Confidence 7887765 444443
No 189
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.74 E-value=0.00086 Score=61.31 Aligned_cols=142 Identities=10% Similarity=0.101 Sum_probs=83.8
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-CC
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FH 180 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g~ 180 (306)
.|+++++.+... +..+.+.+..||+.|.+-.+. ..+.++.+...++++..+. .+++|-..+.. |.
T Consensus 75 vpv~lhlDH~~~--~e~i~~ai~~Gf~sVmid~s~-----------l~~~eni~~t~~v~~~a~~-~gv~Ve~ElG~~gg 140 (282)
T TIGR01859 75 VPVALHLDHGSS--YESCIKAIKAGFSSVMIDGSH-----------LPFEENLALTKKVVEIAHA-KGVSVEAELGTLGG 140 (282)
T ss_pred CeEEEECCCCCC--HHHHHHHHHcCCCEEEECCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEeeCCCcC
Confidence 678888765532 222222344578888774332 1223344455555544433 36666666654 11
Q ss_pred ----------ChHHHHHHHHHHHHcCCcEEEEcccCCCCCC--CCCCcHHHHHHHHhhCCCcEEEec--CCCCHHHHHHH
Q psy4398 181 ----------NEADTIALCKRLEACGIIAIGVHGRTKAERP--RHRNRIEMIRTLTQHLKIPVIANG--GSKEIVDYGGV 246 (306)
Q Consensus 181 ----------~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--~~p~~~~~v~~i~~~~~ipvia~G--GI~s~~~~~~~ 246 (306)
...+..+..+..++.|+|+|.++-.+..+.| .+..+++.+++|++.+++|+++-| ||. .+++.++
T Consensus 141 ~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~-~e~i~~~ 219 (282)
T TIGR01859 141 IEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP-EEQIKKA 219 (282)
T ss_pred ccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC-HHHHHHH
Confidence 0112334333334589999997433222222 234689999999999999999999 875 6778888
Q ss_pred HHhhh---hhccccC
Q psy4398 247 FSLNC---AFLRNHY 258 (306)
Q Consensus 247 l~~~v---~vGrall 258 (306)
++.|+ .++|.+.
T Consensus 220 i~~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 220 IKLGIAKINIDTDCR 234 (282)
T ss_pred HHcCCCEEEECcHHH
Confidence 88765 5666543
No 190
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.74 E-value=0.0021 Score=61.02 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+.++.+. .||+.+.|..+-+ ..++.-.+.++++|+.++ +++.+-...+|+.+++.++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~--------------~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~ 208 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGP--------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRL 208 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc--------------hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHH
Confidence 7888888777665 5999999953211 114556788999999884 5677766667999999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC-HHHHHHHHHhhhhhccccCCCC-C----
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE-IVDYGGVFSLNCAFLRNHYPVE-K---- 262 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~~~~l~~~v~vGrall~~p-~---- 262 (306)
++.+++.++..+- ++. .+.+++..+++++.+++||.+.-.+.+ +++++++++.+. ...+--++ .
T Consensus 209 ~~~l~~~~l~~iE-------eP~-~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a--~d~v~~d~~~~GGi 278 (368)
T cd03329 209 GRALEELGFFWYE-------DPL-REASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGA--TDFLRADVNLVGGI 278 (368)
T ss_pred HHHhhhcCCCeEe-------CCC-CchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCC--CCEEecCccccCCH
Confidence 9999999877663 222 234678889999999999988777888 999999888632 01111133 1
Q ss_pred chHHHHHHHHHhcCCCCC
Q psy4398 263 LPKTILYAHCKYKRFEVP 280 (306)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~ 280 (306)
..-+.+.++.+++|++..
T Consensus 279 t~~~~ia~~a~~~gi~~~ 296 (368)
T cd03329 279 TGAMKTAHLAEAFGLDVE 296 (368)
T ss_pred HHHHHHHHHHHHcCCEEE
Confidence 222377788888888853
No 191
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.74 E-value=0.00012 Score=64.78 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++|+.+++.|++.+++........ ..+.++++++++++.+++|+...|||++.++++.+++.|+ .+|+.++.+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~-g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d 107 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKE-GGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN 107 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc-CCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 588999999999999999865443211 2245889999999999999999999999999999999865 888888887
Q ss_pred C
Q psy4398 261 E 261 (306)
Q Consensus 261 p 261 (306)
|
T Consensus 108 ~ 108 (230)
T TIGR00007 108 P 108 (230)
T ss_pred H
Confidence 7
No 192
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.71 E-value=8.1e-05 Score=66.83 Aligned_cols=88 Identities=7% Similarity=-0.007 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+++.|+..+|+-+-.. ..+.+.+.+++|++ +++||-..|||++ ++++.+++.|+ .+|++.+.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4689999999999999999876532 33557899999999 8899999999996 99999999986 99999999
Q ss_pred CCCchHHHHHHHHHhcC
Q psy4398 260 VEKLPKTILYAHCKYKR 276 (306)
Q Consensus 260 ~p~~~~~~l~~~~~~~g 276 (306)
||.+-..-++++.++.|
T Consensus 117 ~~~~~p~~v~~~~~~~G 133 (262)
T PLN02446 117 DGQIDLERLKDLVRLVG 133 (262)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 85222224455666655
No 193
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.70 E-value=0.0011 Score=61.03 Aligned_cols=143 Identities=12% Similarity=0.111 Sum_probs=89.8
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-- 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-- 178 (306)
..|+.+.|-|.+.+ .+.+.++.||+.|.+-.+. ..+.++.+...++++..+. .+++|-..+..
T Consensus 77 ~vPV~lHLDH~~~~---~i~~ai~~GftSVm~d~S~-----------l~~eEni~~t~~v~~~a~~-~gv~vE~ElG~i~ 141 (293)
T PRK07315 77 TVPVAIHLDHGHYE---DALECIEVGYTSIMFDGSH-----------LPVEENLKLAKEVVEKAHA-KGISVEAEVGTIG 141 (293)
T ss_pred CCcEEEECCCCCHH---HHHHHHHcCCCEEEEcCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEecCccc
Confidence 45888888766433 2223345688888885332 2233445555555554433 36676665543
Q ss_pred C-CC-----hH-HHHHHHHHHHHcCCcEEEEcccCCCCCC---CCCCcHHHHHHHHhhC-CCcEEEecC--CCCHHHHHH
Q psy4398 179 F-HN-----EA-DTIALCKRLEACGIIAIGVHGRTKAERP---RHRNRIEMIRTLTQHL-KIPVIANGG--SKEIVDYGG 245 (306)
Q Consensus 179 g-~~-----~~-~~~~~a~~l~~~G~d~i~v~~~~~~~~~---~~p~~~~~v~~i~~~~-~ipvia~GG--I~s~~~~~~ 245 (306)
| .+ .. ...+-|+.+.+.|+|+|-+.=.+..+.| ..+.+++.+++|++.+ ++|+++-|| |. .+++.+
T Consensus 142 g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~e~~~~ 220 (293)
T PRK07315 142 GEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-DDQIQE 220 (293)
T ss_pred CcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCC-HHHHHH
Confidence 1 11 01 2334455556899999987532222222 1247899999999999 599999999 65 678899
Q ss_pred HHHhhh---hhccccCC
Q psy4398 246 VFSLNC---AFLRNHYP 259 (306)
Q Consensus 246 ~l~~~v---~vGrall~ 259 (306)
+++.|+ .++|++..
T Consensus 221 ~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 221 AIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHHcCCCEEEEccHHHH
Confidence 998876 78888764
No 194
>PRK08185 hypothetical protein; Provisional
Probab=97.66 E-value=0.0017 Score=59.28 Aligned_cols=137 Identities=9% Similarity=0.230 Sum_probs=82.5
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|+.+.|-|... +..+.+.++.||+.|.+-.+. ..+.++.+...++++..+. .+++|-..+..
T Consensus 67 ~~vPV~lHLDHg~~--~e~i~~ai~~Gf~SVM~D~S~-----------l~~eeNi~~t~~vv~~a~~-~gv~vE~ElG~v 132 (283)
T PRK08185 67 SPVPFVIHLDHGAT--IEDVMRAIRCGFTSVMIDGSL-----------LPYEENVALTKEVVELAHK-VGVSVEGELGTI 132 (283)
T ss_pred CCCCEEEECCCCCC--HHHHHHHHHcCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEeec
Confidence 35677777755431 222223344577777774332 2344556666666666543 47777666653
Q ss_pred CC---C---------hHHHHHHHHHHHHcCCcEEEE-----cccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC-H
Q psy4398 179 FH---N---------EADTIALCKRLEACGIIAIGV-----HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE-I 240 (306)
Q Consensus 179 g~---~---------~~~~~~~a~~l~~~G~d~i~v-----~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s-~ 240 (306)
|. + ..+..+..+..++.|+|++.+ |+....+. ....+++.+++|++.+++|+++-||+.. .
T Consensus 133 g~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~-kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~ 211 (283)
T PRK08185 133 GNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDK-KPELQMDLLKEINERVDIPLVLHGGSANPD 211 (283)
T ss_pred cCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCC-CCCcCHHHHHHHHHhhCCCEEEECCCCCCH
Confidence 11 0 112333344444559999998 55433221 1225799999999999999999999864 5
Q ss_pred HHHHHHHHhhh
Q psy4398 241 VDYGGVFSLNC 251 (306)
Q Consensus 241 ~~~~~~l~~~v 251 (306)
++.+++++.|+
T Consensus 212 e~~~~ai~~GI 222 (283)
T PRK08185 212 AEIAESVQLGV 222 (283)
T ss_pred HHHHHHHHCCC
Confidence 66777777765
No 195
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.66 E-value=0.0027 Score=54.76 Aligned_cols=136 Identities=13% Similarity=0.068 Sum_probs=87.4
Q ss_pred CCceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE-ecc
Q psy4398 101 KNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK-IRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK-ir~ 178 (306)
+.|+++.+--.++..+ .++.+ +.|+|.|-+|... .++...++++.+++ .++++.+= +.
T Consensus 53 ~~~i~~~~~v~~~~~~--~~~~~~~aGad~i~~h~~~----------------~~~~~~~~i~~~~~-~g~~~~v~~~~- 112 (202)
T cd04726 53 DKIIVADLKTADAGAL--EAEMAFKAGADIVTVLGAA----------------PLSTIKKAVKAAKK-YGKEVQVDLIG- 112 (202)
T ss_pred CCEEEEEEEeccccHH--HHHHHHhcCCCEEEEEeeC----------------CHHHHHHHHHHHHH-cCCeEEEEEeC-
Confidence 4577776554454322 12333 4599999998432 12345667777775 36665553 33
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
+ .+..+..+ +.+.|+|++.++.....+....+...+.++++++..++|+++.|||+ .+++.++++.|+ .+||
T Consensus 113 -~--~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 113 -V--EDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred -C--CCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHHhcCCCEEEEee
Confidence 2 22334444 66689999988532211122124467888888877789999999996 999999998754 9999
Q ss_pred ccCCCC
Q psy4398 256 NHYPVE 261 (306)
Q Consensus 256 all~~p 261 (306)
+++...
T Consensus 188 ai~~~~ 193 (202)
T cd04726 188 AITGAA 193 (202)
T ss_pred hhcCCC
Confidence 998643
No 196
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.66 E-value=0.00017 Score=64.51 Aligned_cols=81 Identities=12% Similarity=-0.024 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..+.++.+++.|+..+++..-.... ..+.+.++++++.+.+.+|+-..|||+|.++++.+++.++ .+|++.+.|
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~ 109 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALEN 109 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 56788899999999999987654332 3346889999999999999999999999999999999875 899999999
Q ss_pred CCchHH
Q psy4398 261 EKLPKT 266 (306)
Q Consensus 261 p~~~~~ 266 (306)
|.+.+.
T Consensus 110 p~~~~~ 115 (243)
T TIGR01919 110 PWWAAA 115 (243)
T ss_pred HHHHHH
Confidence 865543
No 197
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.65 E-value=0.00018 Score=63.49 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
++..+.|+.+.+.|+..+|+-+-+..-. ..+.+.+.++++.+.+++||=..|||+|.++++.+++.++ .+|+..+.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~-g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~ 109 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKA-GGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVK 109 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeecccccc-CCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceec
Confidence 4689999999999999999865442211 2356889999999999999999999999999999999876 99999999
Q ss_pred CCCchHHHHHHHHHhcC
Q psy4398 260 VEKLPKTILYAHCKYKR 276 (306)
Q Consensus 260 ~p~~~~~~l~~~~~~~g 276 (306)
||.+.+ +|+++.|
T Consensus 110 ~p~~v~----~~~~~~g 122 (241)
T COG0106 110 NPDLVK----ELCEEYG 122 (241)
T ss_pred CHHHHH----HHHHHcC
Confidence 886553 4555555
No 198
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.65 E-value=0.0015 Score=59.77 Aligned_cols=136 Identities=10% Similarity=0.141 Sum_probs=91.7
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g 179 (306)
.|+++.|-+.. ++..+.+.++.||+-|.+..|. -.+.++.+...++++.... .+++|-.-+.. |
T Consensus 78 VPV~lHLDHg~--~~e~i~~ai~~GftSVM~DgS~-----------lp~eeNi~~Trevv~~Ah~-~gv~VEaElG~igg 143 (285)
T PRK07709 78 VPVAIHLDHGS--SFEKCKEAIDAGFTSVMIDASH-----------HPFEENVETTKKVVEYAHA-RNVSVEAELGTVGG 143 (285)
T ss_pred CcEEEECCCCC--CHHHHHHHHHcCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEeccCC
Confidence 57888886553 2333334455688888885442 2345677788888877754 47777766654 1
Q ss_pred C-C--------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCCH-HHHHHHH
Q psy4398 180 H-N--------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKEI-VDYGGVF 247 (306)
Q Consensus 180 ~-~--------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s~-~~~~~~l 247 (306)
. + ..+..+..+-+++.|+|.+-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-..+ ++.++++
T Consensus 144 ~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai 223 (285)
T PRK07709 144 QEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAI 223 (285)
T ss_pred ccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHH
Confidence 1 0 22345555555678999998765555555543 358899999999999999999997765 6778888
Q ss_pred Hhhh
Q psy4398 248 SLNC 251 (306)
Q Consensus 248 ~~~v 251 (306)
+.|+
T Consensus 224 ~~Gi 227 (285)
T PRK07709 224 SLGT 227 (285)
T ss_pred HcCC
Confidence 8765
No 199
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.63 E-value=0.0031 Score=54.97 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=87.6
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccc----ccCCcccc------ccCChHHHH------------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFS----LTGGMGAA------LLSTPDIAC------------ 158 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~----~~~~~G~~------l~~~~~~~~------------ 158 (306)
.+++.=+.+.++++..+.++.+.+ |+..+|+-+..|.... .+..|+.. -.-+.+.+.
T Consensus 10 ~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivs 89 (206)
T PRK09140 10 LPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVT 89 (206)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEEC
Confidence 467777888899999999997765 8999999766554210 00112110 001111111
Q ss_pred -----HHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcE
Q psy4398 159 -----NILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPV 231 (306)
Q Consensus 159 -----eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipv 231 (306)
++++..+ ..+.++..-+. +.+-+..+.+.|+|++.+.. ..+..+++++.+++.+ ++|+
T Consensus 90 p~~~~~v~~~~~-~~~~~~~~G~~-------t~~E~~~A~~~Gad~vk~Fp-------a~~~G~~~l~~l~~~~~~~ipv 154 (206)
T PRK09140 90 PNTDPEVIRRAV-ALGMVVMPGVA-------TPTEAFAALRAGAQALKLFP-------ASQLGPAGIKALRAVLPPDVPV 154 (206)
T ss_pred CCCCHHHHHHHH-HCCCcEEcccC-------CHHHHHHHHHcCCCEEEECC-------CCCCCHHHHHHHHhhcCCCCeE
Confidence 1111111 11222222211 12334556679999998743 1234578999999988 4999
Q ss_pred EEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 232 IANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
++.||| +.+++.+.++.|+ .++++++..
T Consensus 155 vaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 155 FAVGGV-TPENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred EEECCC-CHHHHHHHHHCCCeEEEEehHhccc
Confidence 999999 6899999998854 889999863
No 200
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.62 E-value=0.00025 Score=63.07 Aligned_cols=130 Identities=13% Similarity=0.158 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc---ccccEEEEeccCCC--------hHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN---LSIPVSCKIRVFHN--------EAD 184 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~---~~~pv~vKir~g~~--------~~~ 184 (306)
..++.+.++.|+|+|++-+.. |.....+.+...+-++++++. .++|+++-.-. .+ .+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~----------~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINY----------GALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEH----------HHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHH
T ss_pred HHHHHHHHHcCCceeeeeccc----------cccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHH
Confidence 455555556799999985331 111112233344444444443 37888877332 11 123
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCc----EEEecCC------CCHHHHHHHHHhhh---
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIP----VIANGGS------KEIVDYGGVFSLNC--- 251 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ip----via~GGI------~s~~~~~~~l~~~v--- 251 (306)
....++.+.+.|+|.|-..-... ....+.+.+.++++.+...+| |.++||| .+.+++.++++.|+
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~ 225 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRI 225 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEE
T ss_pred HHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhH
Confidence 68888999999999998753311 111112455666666666889 9999999 88888888777654
Q ss_pred --hhccccC
Q psy4398 252 --AFLRNHY 258 (306)
Q Consensus 252 --~vGrall 258 (306)
..||.++
T Consensus 226 G~~~Gr~i~ 234 (236)
T PF01791_consen 226 GTSSGRNIW 234 (236)
T ss_dssp EEEEHHHHH
T ss_pred HHHHHHHHH
Confidence 7777654
No 201
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.59 E-value=0.0032 Score=56.39 Aligned_cols=185 Identities=15% Similarity=0.104 Sum_probs=108.2
Q ss_pred CceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec-
Q psy4398 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG- 109 (306)
Q Consensus 31 n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~- 109 (306)
+..+.+|.+ -|..-..++.+.|+..+++......... +.+ ..+.++-....+ ......+....|+++.+-
T Consensus 8 ~~~i~~~~~--~D~~sA~~~e~~G~~ai~~s~~~~~~s~-G~p-D~~~~~~~e~~~-----~~~~I~~~~~~Pv~~D~~~ 78 (243)
T cd00377 8 GGPLVLPGA--WDALSARLAERAGFKAIYTSGAGVAASL-GLP-DGGLLTLDEVLA-----AVRRIARAVDLPVIADADT 78 (243)
T ss_pred CCcEEecCC--CCHHHHHHHHHcCCCEEEeccHHHHHhc-CCC-CCCcCCHHHHHH-----HHHHHHhhccCCEEEEcCC
Confidence 344444444 5666666677889988777643221111 111 001111000000 001112223568888753
Q ss_pred -CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc----cccEEEEecc---C-
Q psy4398 110 -TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRV---F- 179 (306)
Q Consensus 110 -g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~----~~pv~vKir~---g- 179 (306)
..++++..+.++++. .|+++|.|.=....+ +.+..|+...-.++...+.+++++++. +++|.++.-. +
T Consensus 79 G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k--~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~ 156 (243)
T cd00377 79 GYGNALNVARTVRELEEAGAAGIHIEDQVGPK--KCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGE 156 (243)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCc--cccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccC
Confidence 346677888777665 599999995443221 112223333445666666677776654 3455555222 3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEec
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~G 235 (306)
...+++++-++.+.++|+|.+-+++.. +.+.++++.+..+.|++.+-
T Consensus 157 ~~~~eai~Ra~ay~~AGAD~v~v~~~~---------~~~~~~~~~~~~~~Pl~~~~ 203 (243)
T cd00377 157 EGLDEAIERAKAYAEAGADGIFVEGLK---------DPEEIRAFAEAPDVPLNVNM 203 (243)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC---------CHHHHHHHHhcCCCCEEEEe
Confidence 357889999999999999999987542 66899999999999988873
No 202
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.57 E-value=0.0022 Score=58.63 Aligned_cols=136 Identities=9% Similarity=0.120 Sum_probs=90.9
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g 179 (306)
.|+.+.|-+... +..+.+.++.||.-|.+..|. -.+.++.+...++++..+. .+++|-.-+.. |
T Consensus 78 vPV~lHLDHg~~--~e~i~~ai~~GftSVM~DgS~-----------l~~eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg 143 (286)
T PRK08610 78 IPVAIHLDHGSS--FEKCKEAIDAGFTSVMIDASH-----------SPFEENVATTKKVVEYAHE-KGVSVEAELGTVGG 143 (286)
T ss_pred CCEEEECCCCCC--HHHHHHHHHcCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEeccCC
Confidence 578888765532 333333445588888875332 2456677888888877653 46776666554 1
Q ss_pred C-C--------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCCH-HHHHHHH
Q psy4398 180 H-N--------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKEI-VDYGGVF 247 (306)
Q Consensus 180 ~-~--------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s~-~~~~~~l 247 (306)
. + ..+..+..+-+++.|+|.|-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-..+ ++.++++
T Consensus 144 ~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai 223 (286)
T PRK08610 144 QEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAI 223 (286)
T ss_pred ccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHH
Confidence 1 0 12344555555678999998866665555543 357899999999999999999998765 6677888
Q ss_pred Hhhh
Q psy4398 248 SLNC 251 (306)
Q Consensus 248 ~~~v 251 (306)
+.|+
T Consensus 224 ~~GI 227 (286)
T PRK08610 224 PFGT 227 (286)
T ss_pred HCCC
Confidence 7765
No 203
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.56 E-value=0.0023 Score=62.04 Aligned_cols=117 Identities=13% Similarity=0.170 Sum_probs=79.8
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE-eccCCChHHHHHHHHHHHHcCCcEEEE
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK-IRVFHNEADTIALCKRLEACGIIAIGV 202 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK-ir~g~~~~~~~~~a~~l~~~G~d~i~v 202 (306)
+.|+|+|-++... +...+.++++.+++ .+.++.+. ++ . .+..+.++.+.+.|+|+|.+
T Consensus 79 ~aGAdgV~v~g~~----------------~~~~~~~~i~~a~~-~G~~~~~g~~s--~--~t~~e~~~~a~~~GaD~I~~ 137 (430)
T PRK07028 79 KAGADIVCILGLA----------------DDSTIEDAVRAARK-YGVRLMADLIN--V--PDPVKRAVELEELGVDYINV 137 (430)
T ss_pred HcCCCEEEEecCC----------------ChHHHHHHHHHHHH-cCCEEEEEecC--C--CCHHHHHHHHHhcCCCEEEE
Confidence 4599998876221 11124566777666 46666654 33 2 23345567788899999987
Q ss_pred cccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc
Q psy4398 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL 263 (306)
Q Consensus 203 ~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~ 263 (306)
+.....+.. ++..++.++++++.+++||++.||| +.+++.++++.| +.+||+++..+.+
T Consensus 138 ~pg~~~~~~-~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~ 199 (430)
T PRK07028 138 HVGIDQQML-GKDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADV 199 (430)
T ss_pred Eeccchhhc-CCChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCH
Confidence 643221111 2345688999999889999999999 588899988875 4999999976543
No 204
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.55 E-value=0.0029 Score=57.81 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|++++|-|.. +|..+.+.++.||+-|.+..|. ..+.++.+...++++..+. .+++|-.-+..
T Consensus 73 ~~VPV~lHLDHg~--~~e~i~~Ai~~GftSVM~DgS~-----------l~~eeNi~~T~~vv~~Ah~-~gv~VEaElG~v 138 (284)
T PRK09195 73 YHHPLALHLDHHE--KFDDIAQKVRSGVRSVMIDGSH-----------LPFAQNISLVKEVVDFCHR-FDVSVEAELGRL 138 (284)
T ss_pred CCCCEEEECCCCC--CHHHHHHHHHcCCCEEEeCCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEecc
Confidence 4578888886654 2333334445688888885332 2456777888888877764 46666665553
Q ss_pred C-C--C---------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHHH
Q psy4398 179 F-H--N---------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243 (306)
Q Consensus 179 g-~--~---------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~ 243 (306)
| . + ..+..+..+-+++.|+|.+-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-.. .++.
T Consensus 139 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~ 218 (284)
T PRK09195 139 GGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDI 218 (284)
T ss_pred cCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHH
Confidence 1 1 0 12334444555578999998765555555533 35889999999999999999999665 4556
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 219 ~~ai~~Gi 226 (284)
T PRK09195 219 QQTIKLGI 226 (284)
T ss_pred HHHHHcCC
Confidence 77777765
No 205
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.53 E-value=0.0034 Score=57.33 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=93.2
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 99 REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
+...|+.++|-|.. ++..+.+.++.||.-|.+..|. -.++++.+...++++..+. .+++|-.-+..
T Consensus 72 ~~~VPValHLDHg~--~~e~i~~ai~~GFtSVM~DgS~-----------lp~eeNi~~T~evv~~Ah~-~gv~VEaElG~ 137 (286)
T PRK12738 72 TYNMPLALHLDHHE--SLDDIRRKVHAGVRSAMIDGSH-----------FPFAENVKLVKSVVDFCHS-QDCSVEAELGR 137 (286)
T ss_pred HCCCCEEEECCCCC--CHHHHHHHHHcCCCeEeecCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEEe
Confidence 34678888887654 2333334445699999986442 2356677888888887765 36666655543
Q ss_pred --CC-------C----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHH
Q psy4398 179 --FH-------N----EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVD 242 (306)
Q Consensus 179 --g~-------~----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~ 242 (306)
|. + ..+..+..+-+++.|+|.|-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-.. .++
T Consensus 138 igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~ 217 (286)
T PRK12738 138 LGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEF 217 (286)
T ss_pred eCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHH
Confidence 10 0 12344555556678999999866665555543 35899999999999999999999665 455
Q ss_pred HHHHHHhhh
Q psy4398 243 YGGVFSLNC 251 (306)
Q Consensus 243 ~~~~l~~~v 251 (306)
.+++++.|+
T Consensus 218 ~~kai~~GI 226 (286)
T PRK12738 218 VRRTIELGV 226 (286)
T ss_pred HHHHHHcCC
Confidence 677777765
No 206
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.52 E-value=0.0033 Score=57.46 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=91.1
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|++++|-|... +..+.+.++.||.-|.+..|. -.+.++.+...++++..+. .+++|-.-+..
T Consensus 73 ~~VPValHLDH~~~--~e~i~~ai~~GftSVMiDgS~-----------lp~eeNi~~T~~vv~~Ah~-~gvsVEaElG~i 138 (284)
T PRK12737 73 YNIPLALHLDHHED--LDDIKKKVRAGIRSVMIDGSH-----------LSFEENIAIVKEVVEFCHR-YDASVEAELGRL 138 (284)
T ss_pred CCCCEEEECCCCCC--HHHHHHHHHcCCCeEEecCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEeec
Confidence 45688888865542 333334445688888885442 2355677788888877765 36666665553
Q ss_pred C-C--C---------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHHH
Q psy4398 179 F-H--N---------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243 (306)
Q Consensus 179 g-~--~---------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~ 243 (306)
| . + ..+..+..+-+++.|+|.+-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-.. .++.
T Consensus 139 gg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~ 218 (284)
T PRK12737 139 GGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDV 218 (284)
T ss_pred cCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence 1 1 0 12344555555668999998865555555543 25889999999999999999999764 4556
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 219 ~kai~~Gi 226 (284)
T PRK12737 219 KKAISLGI 226 (284)
T ss_pred HHHHHCCC
Confidence 77777765
No 207
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.52 E-value=0.0021 Score=56.33 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=115.6
Q ss_pred HHcCCCEEEecceechhhhhhhh-hhhcccccccccCCCCCceeeec-CCCCCCceEEEecCCCHHHHHHHHHHHhc-CC
Q psy4398 51 LDYGADLVYSEELVDHKLVKTER-KVNDLLNTIDFVDPLDGSVVFRT-CPREKNKIILQIGTADPERALEAAKKVEH-DV 127 (306)
Q Consensus 51 ~~~G~g~~~te~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~ 127 (306)
.++|++.++.|-....|...... .+-. .+ ..+.+. ..+-+.|+.+|+.-+++ ..+..++.. |+
T Consensus 44 eegG~DavivEN~gD~Pf~k~v~~~tva---aM--------a~iv~~v~r~v~iPvGvNVLrNd~---vaA~~IA~a~gA 109 (263)
T COG0434 44 EEGGVDAVIVENYGDAPFLKDVGPETVA---AM--------AVIVREVVREVSIPVGVNVLRNDA---VAALAIAYAVGA 109 (263)
T ss_pred HhCCCcEEEEeccCCCCCCCCCChHHHH---HH--------HHHHHHHHHhccccceeeeecccc---HHHHHHHHhcCC
Confidence 46899999999766555432110 0000 00 001111 12346899999988776 445556665 89
Q ss_pred CEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc--cEEEEeccCCChHHHHHHHHH-HHHcCCcEEEEcc
Q psy4398 128 AAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI--PVSCKIRVFHNEADTIALCKR-LEACGIIAIGVHG 204 (306)
Q Consensus 128 d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir~g~~~~~~~~~a~~-l~~~G~d~i~v~~ 204 (306)
+.|-.|.-|-.. .++ .+-++-+...+.+.-..+...+.+ .+-||-..-....+..+.++- ++..++|+++++|
T Consensus 110 ~FIRVN~~tg~~--~td--qGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG 185 (263)
T COG0434 110 DFIRVNVLTGAY--ATD--QGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTG 185 (263)
T ss_pred CEEEEEeeeceE--ecc--cceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEec
Confidence 999999765321 111 134555666666665665533321 233444432222244455544 7778899999998
Q ss_pred cCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCCC
Q psy4398 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYPV 260 (306)
Q Consensus 205 ~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~~ 260 (306)
..-. .+++.+.++.+++.++.|+++.-|++ .+.+.+.++. |+.+|+.+=.|
T Consensus 186 ~~TG----~~~d~~el~~a~~~~~~pvlvGSGv~-~eN~~~~l~~adG~IvgT~lK~~ 238 (263)
T COG0434 186 SRTG----SPPDLEELKLAKEAVDTPVLVGSGVN-PENIEELLKIADGVIVGTSLKKG 238 (263)
T ss_pred ccCC----CCCCHHHHHHHHhccCCCEEEecCCC-HHHHHHHHHHcCceEEEEEEccC
Confidence 6422 35688999999999999999999975 7888888875 88999987543
No 208
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.50 E-value=0.0033 Score=57.34 Aligned_cols=138 Identities=12% Similarity=0.123 Sum_probs=91.7
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|+.++|-+.. ++..+.+.++.||+-|.+..|. ..+.++.+...++++..+. .+++|-.-+..
T Consensus 71 ~~VPValHLDHg~--~~e~i~~ai~~GFtSVM~DgS~-----------lp~eeNi~~T~~vv~~Ah~-~gv~VEaElG~v 136 (282)
T TIGR01858 71 YNMPLALHLDHHE--SLDDIRQKVHAGVRSAMIDGSH-----------FPFAQNVKLVKEVVDFCHR-QDCSVEAELGRL 136 (282)
T ss_pred CCCCEEEECCCCC--CHHHHHHHHHcCCCEEeecCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEEec
Confidence 4578888886554 2333334445688888886442 2355677888888877755 46676665553
Q ss_pred -C---C----C----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHHH
Q psy4398 179 -F---H----N----EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243 (306)
Q Consensus 179 -g---~----~----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~ 243 (306)
| . + ..+..+..+-+++.|+|.|-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-.. .++.
T Consensus 137 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~ 216 (282)
T TIGR01858 137 GGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDV 216 (282)
T ss_pred CCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHH
Confidence 1 0 0 12234555556679999998765555555543 35899999999999999999999765 4556
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 217 ~~ai~~Gi 224 (282)
T TIGR01858 217 RRTIELGI 224 (282)
T ss_pred HHHHHcCC
Confidence 77777665
No 209
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.49 E-value=0.00021 Score=70.80 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCC--CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCH-----------HHHHHHHHh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKA--ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI-----------VDYGGVFSL 249 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~--~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~-----------~~~~~~l~~ 249 (306)
.+.+++|+.+.+.|+|.|++-+.+.. +......++++++++.+.+.+|+...|||+|. ++++.+++.
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~ 346 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRS 346 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHc
Confidence 35899999999999999998766542 22223346899999999999999999999997 668999988
Q ss_pred hh---hhccccCCCC
Q psy4398 250 NC---AFLRNHYPVE 261 (306)
Q Consensus 250 ~v---~vGrall~~p 261 (306)
|+ .+|++.+.+|
T Consensus 347 GadkV~i~s~Av~~~ 361 (538)
T PLN02617 347 GADKISIGSDAVYAA 361 (538)
T ss_pred CCCEEEEChHHHhCh
Confidence 76 9999988876
No 210
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.46 E-value=0.0031 Score=57.37 Aligned_cols=137 Identities=11% Similarity=0.144 Sum_probs=93.2
Q ss_pred CCCceEEEecCC-CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 100 EKNKIILQIGTA-DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 100 ~~~p~ivql~g~-~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
...|++++|-|. +.+... +.++.||+-|.+..|. -.+.++.+...++++..+.. +++|-.-+..
T Consensus 68 ~~VPV~lHLDH~~~~~~i~---~ai~~GftSVMiD~S~-----------l~~eeNi~~t~~vv~~ah~~-gv~VEaElG~ 132 (276)
T cd00947 68 ASVPVALHLDHGSSFELIK---RAIRAGFSSVMIDGSH-----------LPFEENVAKTKEVVELAHAY-GVSVEAELGR 132 (276)
T ss_pred CCCCEEEECCCCCCHHHHH---HHHHhCCCEEEeCCCC-----------CCHHHHHHHHHHHHHHHHHc-CCeEEEEEee
Confidence 467899999765 444433 3345699999996442 23556778888888877653 6666665553
Q ss_pred --CCC---------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---CCcHHHHHHHHhhCCCcEEEecCCCCH-HHH
Q psy4398 179 --FHN---------EADTIALCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEI-VDY 243 (306)
Q Consensus 179 --g~~---------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---p~~~~~v~~i~~~~~ipvia~GGI~s~-~~~ 243 (306)
|.. ..+..+..+-+++.|+|.|-++=.+..+.|.+ ..+++.+++|++.+++|++..||-..+ ++.
T Consensus 133 i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~ 212 (276)
T cd00947 133 IGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQI 212 (276)
T ss_pred ecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence 110 12244444555567999998765555555533 368999999999999999999998765 557
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 213 ~~ai~~Gi 220 (276)
T cd00947 213 RKAIKLGV 220 (276)
T ss_pred HHHHHcCC
Confidence 88888765
No 211
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.45 E-value=0.0045 Score=56.57 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=90.5
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|++++|-|.. ++..+.+.++.||+-|.+..|. -.++++.+...++++..+. .+++|-.-+..
T Consensus 73 ~~VPValHLDH~~--~~e~i~~ai~~GftSVM~DgS~-----------lp~eeNi~~T~~vv~~Ah~-~gvsVEaElG~v 138 (284)
T PRK12857 73 ASVPVALHLDHGT--DFEQVMKCIRNGFTSVMIDGSK-----------LPLEENIALTKKVVEIAHA-VGVSVEAELGKI 138 (284)
T ss_pred CCCCEEEECCCCC--CHHHHHHHHHcCCCeEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEeeec
Confidence 4568888886553 2223333344588888885332 2456777888888877754 46666665553
Q ss_pred CC--------C----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHHH
Q psy4398 179 FH--------N----EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243 (306)
Q Consensus 179 g~--------~----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~ 243 (306)
|. + ..+..+..+-+++.|+|.|-+.-.+..+.|.+ ..+++.+++|++.+++|++..||-.. .++.
T Consensus 139 gg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~ 218 (284)
T PRK12857 139 GGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAI 218 (284)
T ss_pred CCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence 10 0 11334444455678999998866655555543 35889999999999999999999765 4556
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 219 ~~ai~~Gi 226 (284)
T PRK12857 219 RKAISLGV 226 (284)
T ss_pred HHHHHcCC
Confidence 77777765
No 212
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.44 E-value=0.00083 Score=60.50 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCc------cccc--cCChHHHHHHHHHHH-hcccccEEEEeccCC
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGM------GAAL--LSTPDIACNILTTLI-SNLSIPVSCKIRVFH 180 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~------G~~l--~~~~~~~~eiv~~v~-~~~~~pv~vKir~g~ 180 (306)
.+.+.+.++++.+.+ |+|.|||-+....+ ..||- --++ .-+.+.+.++++.+| +..+.|+.+-.- +
T Consensus 21 P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP--~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y--~ 96 (259)
T PF00290_consen 21 PDLETTLEILKALEEAGADIIEIGIPFSDP--VADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTY--Y 96 (259)
T ss_dssp SSHHHHHHHHHHHHHTTBSSEEEE--SSSC--TTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE---H
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEee--c
Confidence 466889999998775 99999996543221 22210 0011 125677888999999 777889877654 2
Q ss_pred Ch---HHHHHHHHHHHHcCCcEEEEccc--------------------------CC-----------CC--------CCC
Q psy4398 181 NE---ADTIALCKRLEACGIIAIGVHGR--------------------------TK-----------AE--------RPR 212 (306)
Q Consensus 181 ~~---~~~~~~a~~l~~~G~d~i~v~~~--------------------------~~-----------~~--------~~~ 212 (306)
+. -...++++.+.++|+|++.+-+- +. .+ +..
T Consensus 97 N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvT 176 (259)
T PF00290_consen 97 NPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVT 176 (259)
T ss_dssp HHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSS
T ss_pred cHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCC
Confidence 21 11445677777777777776331 10 00 001
Q ss_pred C---C--C-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCC
Q psy4398 213 H---R--N-RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYP 259 (306)
Q Consensus 213 ~---p--~-~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~ 259 (306)
| . . -.++++++++.+++||+..=||++.++++++... |+.+|+++++
T Consensus 177 G~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 177 GSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLAAGADGVIVGSAFVK 231 (259)
T ss_dssp STTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHHTTSSEEEESHHHHH
T ss_pred CCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHHccCCEEEECHHHHH
Confidence 1 1 1 2467899999999999999999999999998843 7899999864
No 213
>KOG2550|consensus
Probab=97.42 E-value=0.0045 Score=58.26 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEccc------CC----CCCCCCCCcHHHHHHHH
Q psy4398 156 IACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR------TK----AERPRHRNRIEMIRTLT 224 (306)
Q Consensus 156 ~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~------~~----~~~~~~p~~~~~v~~i~ 224 (306)
+-.++++.+++.. ...|+..-- -+.+-++.|-++|+|++.|--. +. -++..+. ...-+.+.+
T Consensus 278 ~qiemik~iK~~yP~l~ViaGNV------VT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~T-AVy~va~~A 350 (503)
T KOG2550|consen 278 YQLEMIKYIKETYPDLQIIAGNV------VTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGT-AVYKVAEFA 350 (503)
T ss_pred hHHHHHHHHHhhCCCceeeccce------eeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCccc-chhhHHHHH
Confidence 3456667776654 222222111 1346777788899999987322 21 2333333 344456667
Q ss_pred hhCCCcEEEecCCCCHHHHHHHHHhh---hhhcccc
Q psy4398 225 QHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNH 257 (306)
Q Consensus 225 ~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGral 257 (306)
..+++|||+-|||.++-+.-+++..+ |++|.-|
T Consensus 351 ~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lL 386 (503)
T KOG2550|consen 351 NQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLL 386 (503)
T ss_pred HhcCCceeecCCcCccchhHhhhhcCchhheeccee
Confidence 77799999999999999999888765 4777543
No 214
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.42 E-value=0.0043 Score=56.84 Aligned_cols=137 Identities=10% Similarity=0.153 Sum_probs=90.1
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-C
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-F 179 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g 179 (306)
..|++++|-+... +..+.+.++.||+-|.+..|. ..+.++.+...++++..+. .+++|-.-+.. |
T Consensus 77 ~VPV~lHLDHg~~--~e~i~~ai~~GftSVMiDgS~-----------lp~eeNi~~T~~vv~~Ah~-~gv~VEaElG~vg 142 (288)
T TIGR00167 77 GVPVALHLDHGAS--EEDCAQAVKAGFSSVMIDGSH-----------EPFEENIELTKKVVERAHK-MGVSVEAELGTLG 142 (288)
T ss_pred CCcEEEECCCCCC--HHHHHHHHHcCCCEEEecCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEeecc
Confidence 5678888865532 222223344588888885442 2355677788888877654 36676666553 1
Q ss_pred -C-C----------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-C--CcHHHHHHHHhhCCCcEEEecCCCCH-HHH
Q psy4398 180 -H-N----------EADTIALCKRLEACGIIAIGVHGRTKAERPRH-R--NRIEMIRTLTQHLKIPVIANGGSKEI-VDY 243 (306)
Q Consensus 180 -~-~----------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p--~~~~~v~~i~~~~~ipvia~GGI~s~-~~~ 243 (306)
. + ..+..+..+-+++.|+|.|-+.=.+..+.|.+ | .+++.+++|++.+++|++..||-..+ ++.
T Consensus 143 g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~ 222 (288)
T TIGR00167 143 GEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEI 222 (288)
T ss_pred CccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence 0 0 11234444444568999999866555555532 3 58999999999999999999998765 577
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 223 ~~ai~~Gi 230 (288)
T TIGR00167 223 KKAISLGV 230 (288)
T ss_pred HHHHHcCC
Confidence 88888765
No 215
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0011 Score=64.06 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCC--------CCCCCcHHHHHHH
Q psy4398 153 TPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER--------PRHRNRIEMIRTL 223 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~--------~~~p~~~~~v~~i 223 (306)
.++.+.++|..+|+.. ..+|+||+-.+...+ .++--..++++|.|+|+|...... +.+-+..-.+.+.
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~v~---~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~ 362 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHGVG---TIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAET 362 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccchH---HHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHH
Confidence 4778899999998875 467999999643322 222227789999999987543221 1221111122333
Q ss_pred HhhC-------CCcEEEecCCCCHHHHHHHHHh
Q psy4398 224 TQHL-------KIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 224 ~~~~-------~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+.+ .+-|++.||+.|..|.-.++..
T Consensus 363 ~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aL 395 (485)
T COG0069 363 HQTLVLNGLRDKVKLIADGGLRTGADVAKAAAL 395 (485)
T ss_pred HHHHHHcCCcceeEEEecCCccCHHHHHHHHHh
Confidence 3332 4789999999999998777764
No 216
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.40 E-value=0.006 Score=54.46 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec---CCCHHHH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG---TADPERA 116 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~---g~~~~~~ 116 (306)
+.-|.....++.+.|+..+++...... ...+.+. ...++-.+...- -+.+.+.+ ...|+++-+= +.++++.
T Consensus 18 ~ayD~~sA~i~e~aG~dai~v~~s~~a-~~~G~pD-~~~vtl~em~~~--~~~I~r~~--~~~pviaD~~~G~g~~~~~~ 91 (240)
T cd06556 18 TAYDYSMAKQFADAGLNVMLVGDSQGM-TVAGYDD-TLPYPVNDVPYH--VRAVRRGA--PLALIVADLPFGAYGAPTAA 91 (240)
T ss_pred cCCCHHHHHHHHHcCCCEEEEChHHHH-HhcCCCC-CCCcCHHHHHHH--HHHHHhhC--CCCCEEEeCCCCCCcCHHHH
Confidence 456777777787899988888643221 1111110 001100000000 00111111 1248888872 4466777
Q ss_pred HHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC---------------
Q psy4398 117 LEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH--------------- 180 (306)
Q Consensus 117 ~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~--------------- 180 (306)
.+.++++. .|+++|.|- | + ....+.+++++++ +++|..++...+
T Consensus 92 ~~~~~~l~~aGa~gv~iE----------D--~-------~~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~ 151 (240)
T cd06556 92 FELAKTFMRAGAAGVKIE----------G--G-------EWHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRG 151 (240)
T ss_pred HHHHHHHHHcCCcEEEEc----------C--c-------HHHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccC
Confidence 77777665 599999994 1 1 1234556677655 478888877521
Q ss_pred --ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 181 --NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 181 --~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
..+++++=++.++++|+|.|.+.+. ..+.++++.+.+++|++++|.
T Consensus 152 ~~~~~~ai~Ra~ay~~AGAd~i~~e~~----------~~e~~~~i~~~~~~P~~~~ga 199 (240)
T cd06556 152 DEAGEQLIADALAYAPAGADLIVMECV----------PVELAKQITEALAIPLAGIGA 199 (240)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhCCCCEEEEec
Confidence 1345777889999999999998642 458899999999999999876
No 217
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.39 E-value=0.0066 Score=57.35 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=104.2
Q ss_pred CceEEEecCCCHHHHHHHHHH-HhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~-~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
.|+-.++...+++++.+.++. .++||..+-+.+|- .+++.-.+.++++|+.++ +.+.+-...
T Consensus 131 v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~ 195 (355)
T cd03321 131 VQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYNQ 195 (355)
T ss_pred eeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 455555555566776655554 45699988886542 123444677889998874 456665555
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
+|+.+++.++++.+++.+++.|- ++. .+.+++..+++++.+++||.+.-.+.++.+++.+++... ...+-
T Consensus 196 ~~~~~~A~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~--~d~i~ 265 (355)
T cd03321 196 SLTVPEAIERGQALDQEGLTWIE-------EPT-LQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGA--CDLVM 265 (355)
T ss_pred CcCHHHHHHHHHHHHcCCCCEEE-------CCC-CCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCC--CCeEe
Confidence 79999999999999999988875 222 245788999999999999998888899999999887532 00011
Q ss_pred CCC-C----chHHHHHHHHHhcCCCC
Q psy4398 259 PVE-K----LPKTILYAHCKYKRFEV 279 (306)
Q Consensus 259 ~~p-~----~~~~~l~~~~~~~g~~~ 279 (306)
-++ . ..-..+.++.+++|++.
T Consensus 266 ~~~~~~GGit~~~~ia~~A~~~gi~~ 291 (355)
T cd03321 266 PDLMKIGGVTGWLRASALAEQAGIPM 291 (355)
T ss_pred cCHhhhCCHHHHHHHHHHHHHcCCee
Confidence 122 1 11126667777888774
No 218
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.37 E-value=0.004 Score=54.51 Aligned_cols=130 Identities=16% Similarity=0.087 Sum_probs=87.9
Q ss_pred HHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC---------------
Q psy4398 116 ALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF--------------- 179 (306)
Q Consensus 116 ~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g--------------- 179 (306)
..+.++.+.+ |-|+|.+ ||+..-..+.+.++++++|+..++|++.-.+..
T Consensus 30 ~~ei~~~~~~~GTDaImI--------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~sv 95 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMI--------------GGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPSV 95 (240)
T ss_pred cHHHHHHHHHcCCCEEEE--------------CCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEEE
Confidence 4555565554 9999999 455555678899999999998899988875530
Q ss_pred -------CChHHHHHHHHHHHHcCCc-----EEEEcc----------c----C-----------------------CCCC
Q psy4398 180 -------HNEADTIALCKRLEACGII-----AIGVHG----------R----T-----------------------KAER 210 (306)
Q Consensus 180 -------~~~~~~~~~a~~l~~~G~d-----~i~v~~----------~----~-----------------------~~~~ 210 (306)
|-...-.+-++.+.+.+.. ++++.. + + ..+.
T Consensus 96 LNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsg 175 (240)
T COG1646 96 LNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSG 175 (240)
T ss_pred ecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCC
Confidence 0001123344444444422 222211 1 0 0233
Q ss_pred CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 211 ~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
+..|...+.++++++.. |+|..|||+|.++++++.++++ .+|..++.+|
T Consensus 176 a~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 176 AGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred CCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 45566778888777776 9999999999999999999754 9999999988
No 219
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.36 E-value=0.0058 Score=56.31 Aligned_cols=126 Identities=10% Similarity=0.092 Sum_probs=82.8
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g 179 (306)
.|+.+.|-|.. ++..+.+.++.||+-|.+..|. -.+.++.+...++++..+. .+++|-.-+.. |
T Consensus 75 VPValHLDHg~--~~e~i~~ai~~GftSVM~DgS~-----------l~~eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg 140 (307)
T PRK05835 75 IPVALHLDHGT--TFESCEKAVKAGFTSVMIDASH-----------HAFEENLELTSKVVKMAHN-AGVSVEAELGRLMG 140 (307)
T ss_pred CeEEEECCCCC--CHHHHHHHHHcCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEecccCC
Confidence 67888876553 2333334445588888885442 2345677777888777654 46666665553 1
Q ss_pred C-------C----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCC--C--CCcHHHHHHHHhhCCCcEEEecCCCCHH
Q psy4398 180 H-------N----EADTIALCKRLEACGIIAIGVHGRTKAERPR--H--RNRIEMIRTLTQHLKIPVIANGGSKEIV 241 (306)
Q Consensus 180 ~-------~----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~--p~~~~~v~~i~~~~~ipvia~GGI~s~~ 241 (306)
. . ..+..+..+-+++.|+|.|-+.=.+..+.|. + ..+++.+++|++.+++|++..||-..++
T Consensus 141 ~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~ 217 (307)
T PRK05835 141 IEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPD 217 (307)
T ss_pred ccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCch
Confidence 0 0 1224455555567899999876555555553 2 3689999999999999999999988666
No 220
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.34 E-value=0.00087 Score=58.82 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=63.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhcc
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLR 255 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGr 255 (306)
.++++....|...+..|...+-+. ..+.+ .+.++++++++.+ ++|++..|||+|.++++++++++ +.+|+
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe---~SG~~---~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLE---YSGAY---GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeC---CCCCc---CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 567788999999999996665555 12222 4679999999999 99999999999999999999975 59999
Q ss_pred ccCCCCC
Q psy4398 256 NHYPVEK 262 (306)
Q Consensus 256 all~~p~ 262 (306)
+++.||.
T Consensus 206 ai~~~p~ 212 (219)
T cd02812 206 IVEEDPN 212 (219)
T ss_pred hhhCCHH
Confidence 9999873
No 221
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.33 E-value=0.0037 Score=54.77 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=86.4
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc----cccCCc--------cccccCChHHHHHHHHHHHhcc
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF----SLTGGM--------GAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~----~~~~~~--------G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
.+++.=|.+.++++....++.+.+ |+..+|+-+..|..- ..+..| |..-.-+++.+.+.+++
T Consensus 13 ~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a----- 87 (213)
T PRK06552 13 NGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA----- 87 (213)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc-----
Confidence 367777788999999999997765 899999988776520 000011 11111122222221111
Q ss_pred cccEEEEeccCCChH----------------HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcE
Q psy4398 169 SIPVSCKIRVFHNEA----------------DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPV 231 (306)
Q Consensus 169 ~~pv~vKir~g~~~~----------------~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipv 231 (306)
+-.+.| +++.+.+ .+..-+..+.++|+|+|-+... .....++++.++..++ +|+
T Consensus 88 GA~Fiv--sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa-------~~~G~~~ik~l~~~~p~ip~ 158 (213)
T PRK06552 88 GAQFIV--SPSFNRETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKLFPG-------STLGPSFIKAIKGPLPQVNV 158 (213)
T ss_pred CCCEEE--CCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEECCc-------ccCCHHHHHHHhhhCCCCEE
Confidence 111111 1111110 0122233445699999998542 1234588999998884 999
Q ss_pred EEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 232 IANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
++.|||+ .+++.+.++.++ .+|+.++.
T Consensus 159 ~atGGI~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 159 MVTGGVN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred EEECCCC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 9999987 899999999864 88888864
No 222
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=97.30 E-value=0.0068 Score=55.18 Aligned_cols=127 Identities=13% Similarity=0.182 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
.-|.+.+.+..+.+. .|+++|-++.+. |-...-..+.-.++++.+++.+ .+||.+.++. .+..+++
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~Gst----------GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i 82 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTT----------GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAI 82 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCC----------cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHH
Confidence 346677888777665 599999886442 2222223344455566665555 4788888874 4567899
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE------EecCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI------ANGGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi------a~GGI~s~~~~~~~l~ 248 (306)
++++.+++.|+|++.+....-.. .....-.++.++|.+++++||+ .+|---+++...++.+
T Consensus 83 ~~a~~a~~~Gad~v~v~pP~y~~-~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 83 ELARHAEEAGADGVLVVPPYYNK-PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHHHHcCCCEEEECCCcCCC-CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 99999999999999986543211 1111235677888888889987 3455557777776664
No 223
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.24 E-value=0.0055 Score=53.27 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=84.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccc----ccCCc-----cccccCChHHHHHHHHHHHhccccc
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFS----LTGGM-----GAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~----~~~~~-----G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+++.=|.+.++++..+.++.+.+ |+..||+.+..|+... .+..| |..-.-+++.+.+.+++ +-.
T Consensus 8 ~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a-----GA~ 82 (204)
T TIGR01182 8 AKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA-----GAQ 82 (204)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc-----CCC
Confidence 467777889999999999997765 9999999887765200 00111 11111122222222211 111
Q ss_pred EEEEeccCCChHH----------------HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEe
Q psy4398 172 VSCKIRVFHNEAD----------------TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIAN 234 (306)
Q Consensus 172 v~vKir~g~~~~~----------------~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~ 234 (306)
+. ++++.+.+- +..-+..+.++|++.+-+..-. ...+ ..+++.++.-+ ++|++.+
T Consensus 83 Fi--vsP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~---~~GG---~~yikal~~plp~i~~~pt 154 (204)
T TIGR01182 83 FI--VSPGLTPELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAE---VSGG---VKMLKALAGPFPQVRFCPT 154 (204)
T ss_pred EE--ECCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCch---hcCC---HHHHHHHhccCCCCcEEec
Confidence 11 222221100 1112223344677777665421 1111 37889998888 7999999
Q ss_pred cCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 235 GGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
|||+ .+++.+.++.++ .+|+.|+..
T Consensus 155 GGV~-~~N~~~~l~aGa~~vg~Gs~L~~~ 182 (204)
T TIGR01182 155 GGIN-LANVRDYLAAPNVACGGGSWLVPK 182 (204)
T ss_pred CCCC-HHHHHHHHhCCCEEEEEChhhcCc
Confidence 9986 688999998864 888888853
No 224
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.22 E-value=0.049 Score=48.76 Aligned_cols=176 Identities=14% Similarity=0.137 Sum_probs=106.4
Q ss_pred ccccccccCCceEEccCCCCCCHH-HHHH---HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCC--Cceeee
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLP-FRLL---ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD--GSVVFR 95 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~-~r~~---~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~ 95 (306)
+++++....++.++|--|-+-... .... +++.|+.++.-...-+.... ..|..+|. .+.+.+
T Consensus 6 ~~~~~~~~~~~~~iaGPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~------------~sf~G~G~~gl~~L~~ 73 (250)
T PRK13397 6 SDFQNKTCSKNNFIVGPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSA------------ASFQGLGLQGIRYLHE 73 (250)
T ss_pred EEecCccCCCCcEEeccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCC------------cccCCCCHHHHHHHHH
Confidence 456777777777777444333333 3332 45678766666544311111 11222221 233455
Q ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 96 TCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 96 ~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
.+.+.|.|++-.++... +.. .+.+.+|.+.| |+..+++.+++. ++.+ .+.||.+|
T Consensus 74 ~~~~~Gl~~~Tev~d~~--~v~----~~~e~vdilqI--------------gs~~~~n~~LL~----~va~-tgkPVilk 128 (250)
T PRK13397 74 VCQEFGLLSVSEIMSER--QLE----EAYDYLDVIQV--------------GARNMQNFEFLK----TLSH-IDKPILFK 128 (250)
T ss_pred HHHHcCCCEEEeeCCHH--HHH----HHHhcCCEEEE--------------CcccccCHHHHH----HHHc-cCCeEEEe
Confidence 56667888887774322 222 22235788888 445566655544 4433 58999999
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEE-Ec-ccCCCCCC-CCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIG-VH-GRTKAERP-RHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~-v~-~~~~~~~~-~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
-....+.+++...++.+.+.|..-|. +| +...-+.+ ....++..+..+++.+++|||..
T Consensus 129 ~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd 190 (250)
T PRK13397 129 RGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVD 190 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEEC
Confidence 99778899999999999999996555 55 43221212 11457888899999899998874
No 225
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.20 E-value=0.0069 Score=56.65 Aligned_cols=130 Identities=8% Similarity=0.111 Sum_probs=82.3
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-C
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-F 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g 179 (306)
.|+.+.|-+.. ++..+.+.++.||+-|.+..|. |..|. -..++++.+...++++.... .+++|-.-+.. |
T Consensus 76 VPValHLDHg~--~~e~i~~ai~~GftSVMiDgS~l~~~~~-----~~p~eENI~~Tkevve~Ah~-~Gv~VEaELG~vg 147 (347)
T PRK09196 76 IPVVMHQDHGN--SPATCQRAIQLGFTSVMMDGSLKADGKT-----PASYEYNVDVTRKVVEMAHA-CGVSVEGELGCLG 147 (347)
T ss_pred CcEEEECCCCC--CHHHHHHHHHcCCCEEEecCCCCcccCC-----CCCHHHHHHHHHHHHHHHHH-cCCeEEEEEeecc
Confidence 67888886653 2333444455688888886553 11110 01356677888888877643 47776666543 1
Q ss_pred -CC---------------------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---C----CcHHHHHHHHhhC-CC
Q psy4398 180 -HN---------------------EADTIALCKRLEACGIIAIGVHGRTKAERPRH---R----NRIEMIRTLTQHL-KI 229 (306)
Q Consensus 180 -~~---------------------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---p----~~~~~v~~i~~~~-~i 229 (306)
.. ..+..+..+-+++.|+|.|-+.=.+..+.|.+ | .+++.+++|++++ ++
T Consensus 148 g~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~v 227 (347)
T PRK09196 148 SLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNT 227 (347)
T ss_pred CccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCC
Confidence 10 12345555666678999998654444444432 3 6899999999999 79
Q ss_pred cEEEecCCCC
Q psy4398 230 PVIANGGSKE 239 (306)
Q Consensus 230 pvia~GGI~s 239 (306)
|++..||-..
T Consensus 228 PLVLHGgSG~ 237 (347)
T PRK09196 228 HLVMHGSSSV 237 (347)
T ss_pred CEEEeCCCCC
Confidence 9999999654
No 226
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.20 E-value=0.0026 Score=54.12 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCcEEEEcccCCC---CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKA---ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPV 260 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~---~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~ 260 (306)
+-++.+.+.|+|++.+...... .....+..++.++++++..++||++.|||+ .+++.++++.| +++|++++..
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCCEEEEehHhhcC
Confidence 3345667789999998654322 122145678999999988899999999995 68899888864 5999998865
Q ss_pred CC
Q psy4398 261 EK 262 (306)
Q Consensus 261 p~ 262 (306)
+.
T Consensus 185 ~~ 186 (196)
T cd00564 185 DD 186 (196)
T ss_pred CC
Confidence 43
No 227
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=97.20 E-value=0.01 Score=54.99 Aligned_cols=137 Identities=9% Similarity=0.120 Sum_probs=87.8
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-- 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-- 178 (306)
..|++++|-|.. ++..+.+.++.||+-|.+..|. -.+.++.+...++++..+. .+++|-.-+..
T Consensus 85 ~VPV~lHLDHg~--~~e~i~~ai~~GftSVMiD~S~-----------lp~eeNI~~T~evv~~Ah~-~GvsVEaElG~ig 150 (321)
T PRK07084 85 PIPIVLHLDHGD--SFELCKDCIDSGFSSVMIDGSH-----------LPYEENVALTKKVVEYAHQ-FDVTVEGELGVLA 150 (321)
T ss_pred CCcEEEECCCCC--CHHHHHHHHHcCCCEEEeeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEeeec
Confidence 467777776553 2233334445588888875442 2345677778888877654 46666655543
Q ss_pred CC--C-------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCC-------CCCcHHHHHHHHhhC-CCcEEEecCCCC--
Q psy4398 179 FH--N-------EADTIALCKRLEACGIIAIGVHGRTKAERPR-------HRNRIEMIRTLTQHL-KIPVIANGGSKE-- 239 (306)
Q Consensus 179 g~--~-------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~-------~p~~~~~v~~i~~~~-~ipvia~GGI~s-- 239 (306)
|. + ..+..+..+-+++.|+|.+-+.-.+..+.|. ...+++.+++|++.+ ++|++..||-..
T Consensus 151 g~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~ 230 (321)
T PRK07084 151 GVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQ 230 (321)
T ss_pred CccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcH
Confidence 10 0 1234444555556899999876555444443 236899999999999 799999999733
Q ss_pred --------------------HHHHHHHHHhhh
Q psy4398 240 --------------------IVDYGGVFSLNC 251 (306)
Q Consensus 240 --------------------~~~~~~~l~~~v 251 (306)
.++.+++++.|+
T Consensus 231 ~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI 262 (321)
T PRK07084 231 EYVKTINEYGGKLKDAIGIPEEQLRKAAKSAV 262 (321)
T ss_pred HHHHHHHHhcCccccCCCCCHHHHHHHHHcCC
Confidence 367777777755
No 228
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.19 E-value=0.0098 Score=52.06 Aligned_cols=130 Identities=25% Similarity=0.348 Sum_probs=85.7
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI 197 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~ 197 (306)
-|+++++ |+-+|.--=-.|.... + .-|-+-+.||+.+.||..+ +.+||..|+|+|- .--|+.|+..|+
T Consensus 32 QA~IAE~aGAvAVMaLervPaDiR-~-aGGVaRMaDp~~i~eim~a----VsIPVMAKvRIGH-----~~EA~iLealgV 100 (296)
T COG0214 32 QARIAEEAGAVAVMALERVPADIR-A-AGGVARMADPKMIEEIMDA----VSIPVMAKVRIGH-----FVEAQILEALGV 100 (296)
T ss_pred HHHHHHhcCceeEeehhhCcHHHH-h-ccCccccCCHHHHHHHHHh----cccceeeeeecch-----hHHHHHHHHhCC
Confidence 3456654 8777765444565432 2 2355677899987777655 5799999999764 345788999999
Q ss_pred cEEE----Ecc-------------------------------------cCCCCCCCC-----------------------
Q psy4398 198 IAIG----VHG-------------------------------------RTKAERPRH----------------------- 213 (306)
Q Consensus 198 d~i~----v~~-------------------------------------~~~~~~~~~----------------------- 213 (306)
|+|. ++. |++.+.-.+
T Consensus 101 D~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~ 180 (296)
T COG0214 101 DMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMT 180 (296)
T ss_pred CccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccC
Confidence 9996 111 111100000
Q ss_pred -----------CCcHHHHHHHHhhCCCcE--EEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 214 -----------RNRIEMIRTLTQHLKIPV--IANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 214 -----------p~~~~~v~~i~~~~~ipv--ia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
..-++++.++++.-++|| ++.|||-++.|+.-+... |+-+|+++|.
T Consensus 181 edel~~~Ak~~~~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 181 EDELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 012466777777666776 588999999999877765 5689999886
No 229
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=97.19 E-value=0.0084 Score=56.04 Aligned_cols=142 Identities=8% Similarity=0.070 Sum_probs=89.0
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-- 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-- 178 (306)
.|+.+.|-+.. ++..+.+.++.||.-|.+..|. |. ++-...+.++.+...++++.... .+++|-.-+..
T Consensus 74 VPValHLDHg~--~~e~i~~Ai~~GFtSVMiDgS~l~~-----~~~~~p~eENI~~Tkevve~Ah~-~GvsVEaELG~ig 145 (347)
T TIGR01521 74 IPVVMHQDHGN--SPATCQRAIQLGFTSVMMDGSLRED-----AKTPADYDYNVRVTAEVVAFAHA-VGASVEGELGCLG 145 (347)
T ss_pred CcEEEECCCCC--CHHHHHHHHHcCCCEEeecCcCCcc-----cCCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeeecc
Confidence 67888886553 2333334455688888886553 11 01112355677778888777654 35555554443
Q ss_pred CC--------C-------------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---C----CcHHHHHHHHhhC-CC
Q psy4398 179 FH--------N-------------EADTIALCKRLEACGIIAIGVHGRTKAERPRH---R----NRIEMIRTLTQHL-KI 229 (306)
Q Consensus 179 g~--------~-------------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---p----~~~~~v~~i~~~~-~i 229 (306)
|. + ..+..+..+-+++.|+|.|-+.=.+..+.|.+ | .+++.+++|++++ ++
T Consensus 146 g~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~v 225 (347)
T TIGR01521 146 SLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDT 225 (347)
T ss_pred cccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCC
Confidence 11 0 11234444555668999998755554444432 3 6899999999999 79
Q ss_pred cEEEecCCCCH----------------------HHHHHHHHhhh
Q psy4398 230 PVIANGGSKEI----------------------VDYGGVFSLNC 251 (306)
Q Consensus 230 pvia~GGI~s~----------------------~~~~~~l~~~v 251 (306)
|++..||-..+ ++.+++++.|+
T Consensus 226 PLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI 269 (347)
T TIGR01521 226 HLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGV 269 (347)
T ss_pred CEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCC
Confidence 99999997755 67777777755
No 230
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.18 E-value=0.0081 Score=52.48 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=64.5
Q ss_pred ccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 168 LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 168 ~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
++....+.++.. ..+.+..+++.|+|+|.+....... ....|..++.++.+++...+|+++-|||+ ++++.+
T Consensus 101 ~~~~~iIG~S~h-----~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~-~~nv~~ 174 (211)
T COG0352 101 LGPGLIIGLSTH-----DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGIN-LENVPE 174 (211)
T ss_pred cCCCCEEEeecC-----CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHH
Confidence 333445555532 3566677788999999985533221 11146678999999999999999999986 899999
Q ss_pred HHHhh---hhhccccCCCCCc
Q psy4398 246 VFSLN---CAFLRNHYPVEKL 263 (306)
Q Consensus 246 ~l~~~---v~vGrall~~p~~ 263 (306)
+++.| +++-|+++..+..
T Consensus 175 v~~~Ga~gVAvvsai~~a~d~ 195 (211)
T COG0352 175 VLEAGADGVAVVSAITSAADP 195 (211)
T ss_pred HHHhCCCeEEehhHhhcCCCH
Confidence 99885 4888999875433
No 231
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.17 E-value=0.0031 Score=54.70 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=54.4
Q ss_pred HHHHHHcCCcEEEEcccCCCC---CCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 189 CKRLEACGIIAIGVHGRTKAE---RPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~---~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
+....+.|+|+|.++...... .+..+..++.++++++..+ +||++.||| +.+++.++++.| +.+|++++..+
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~ 195 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAE 195 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCC
Confidence 455557899999986543222 2222335899999999886 999999999 589999998875 48999988654
Q ss_pred C
Q psy4398 262 K 262 (306)
Q Consensus 262 ~ 262 (306)
.
T Consensus 196 d 196 (212)
T PRK00043 196 D 196 (212)
T ss_pred C
Confidence 3
No 232
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.014 Score=51.05 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=98.4
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
.++..||...+...+.+-.+.+++ |+|-+-+..- +|| .-+=-.+++++++....|++|=+
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPN---------------iTfGp~~v~~l~~~t~~p~DvHL 68 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPN---------------ITFGPPVVKALRKITDLPLDVHL 68 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC---------------cccCHHHHHHHhhcCCCceEEEE
Confidence 357788889998888888888875 9998777532 454 22334578888888889999887
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCC
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERP 211 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~ 211 (306)
=+ ++...+++.+.++|+|.|++|.-.. ..++
T Consensus 69 MV----~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGf 144 (220)
T COG0036 69 MV----ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGF 144 (220)
T ss_pred ec----CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCC
Confidence 63 3456788889999999999875210 1111
Q ss_pred CC----CCcHHHHHHHHhhCC----CcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 212 RH----RNRIEMIRTLTQHLK----IPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 212 ~~----p~~~~~v~~i~~~~~----ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
.| |..++-++++++..+ +-|-.=|||+ .+++..+.++|+ ..|++++.+++
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSalF~~~d 205 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSALFGADD 205 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEEeCCcc
Confidence 11 223556666666653 2355558876 788888888876 99999998775
No 233
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.16 E-value=0.0067 Score=53.51 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=53.2
Q ss_pred HHHHHHcCCcEEEEcccCCC-CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 189 CKRLEACGIIAIGVHGRTKA-ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~-~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
+..+++.|+|+|.+...... .....|..++.++++++.+++||++-||| +.+++.++++.| +++-++++..+
T Consensus 124 a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~~ 199 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDAH 199 (221)
T ss_pred HHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCCC
Confidence 34456799999998654211 12234567888888999999999999999 689999998874 47777777533
No 234
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=97.15 E-value=0.0075 Score=55.27 Aligned_cols=138 Identities=11% Similarity=0.134 Sum_probs=87.5
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|+.++|-|... +..+.+.+..||+-|.+..|. -.+.++.+...++++..++ .+++|-.-+..
T Consensus 72 ~~vPValHLDH~~~--~e~i~~ai~~GftSVM~DgS~-----------l~~eeNi~~T~~vv~~ah~-~gv~VEaElG~i 137 (287)
T PF01116_consen 72 ASVPVALHLDHGKD--FEDIKRAIDAGFTSVMIDGSA-----------LPFEENIAITREVVEYAHA-YGVSVEAELGHI 137 (287)
T ss_dssp STSEEEEEEEEE-S--HHHHHHHHHHTSSEEEEE-TT-----------S-HHHHHHHHHHHHHHHHH-TT-EEEEEESBS
T ss_pred cCCCEEeecccCCC--HHHHHHHHHhCcccccccCCc-----------CCHHHHHHHHHHHHHhhhh-hCCEEEEEeeee
Confidence 35677777754321 222223334488888885442 2345677777888777665 46777776664
Q ss_pred C-----CC--------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--C--CcHHHHHHHHhhC-CCcEEEecCCCCH
Q psy4398 179 F-----HN--------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--R--NRIEMIRTLTQHL-KIPVIANGGSKEI 240 (306)
Q Consensus 179 g-----~~--------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p--~~~~~v~~i~~~~-~ipvia~GGI~s~ 240 (306)
+ .+ ..+..+..+-+++.|+|.|-+.=.+..+.|.+ . .+++.+++|++.+ ++|++..||-..+
T Consensus 138 ~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~ 217 (287)
T PF01116_consen 138 GGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLP 217 (287)
T ss_dssp SSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-
T ss_pred eccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 1 11 12355666666789999999866665555554 2 4789999999999 9999999997765
Q ss_pred H-HHHHHHHhhh
Q psy4398 241 V-DYGGVFSLNC 251 (306)
Q Consensus 241 ~-~~~~~l~~~v 251 (306)
+ +.+++++.|+
T Consensus 218 ~e~~~~ai~~Gi 229 (287)
T PF01116_consen 218 DEQIRKAIKNGI 229 (287)
T ss_dssp HHHHHHHHHTTE
T ss_pred HHHHHHHHHcCc
Confidence 4 7788888765
No 235
>PRK08005 epimerase; Validated
Probab=97.13 E-value=0.022 Score=49.76 Aligned_cols=143 Identities=14% Similarity=0.175 Sum_probs=94.0
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
+..+|.+.+...+.+-.+++++ |+|.+-+.+-- +.+..+.-+--++++++++.+..|+.|=+=.
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMD-----------G~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv---- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIED-----------TSFINNITFGMKTIQAVAQQTRHPLSFHLMV---- 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccC-----------CCcCCccccCHHHHHHHHhcCCCCeEEEecc----
Confidence 5568888898888888888875 88876664321 1122222333456788888777887777653
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCCCC----
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERPRH---- 213 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~~~---- 213 (306)
++...+++.+.++|+|.|++|--.. ..++.+
T Consensus 68 ~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~ 147 (210)
T PRK08005 68 SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFI 147 (210)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceec
Confidence 2345677888889999999874310 111111
Q ss_pred CCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 214 RNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 214 p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
|..++-++++++.. ...|-.=|||+ .+++..+.++|+ .+|++++.++.
T Consensus 148 ~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 148 AAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAAAGAQHLVIGRALFTTAN 199 (210)
T ss_pred HHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhCCCC
Confidence 12345566666554 34677789987 788889888876 89999986543
No 236
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.12 E-value=0.019 Score=49.30 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=83.4
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc-----------cccCCccccccCChHHHHHHHHH------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF-----------SLTGGMGAALLSTPDIACNILTT------ 163 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~-----------~~~~~~G~~l~~~~~~~~eiv~~------ 163 (306)
.+++.=+.+.++++..+.++.+.+ |+..||+-+-.|... ....+.|.-+ .. +.+...++.
T Consensus 12 ~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl-~~-d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 12 HRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTIL-TL-EDLEEAIAAGAQFCF 89 (187)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEE-cH-HHHHHHHHcCCCEEE
Confidence 356666778888888888886654 899999965543310 0111122211 11 111111110
Q ss_pred ----------HHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEE
Q psy4398 164 ----------LISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVI 232 (306)
Q Consensus 164 ----------v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvi 232 (306)
+++..+.+.. +| ..+..+ +..+.+.|+|++-+... .. +...++++.+++.+ ++|++
T Consensus 90 ~p~~~~~~~~~~~~~~~~~i----~G--~~t~~e-~~~A~~~Gadyv~~Fpt---~~---~~G~~~l~~~~~~~~~ipvv 156 (187)
T PRK07455 90 TPHVDPELIEAAVAQDIPII----PG--ALTPTE-IVTAWQAGASCVKVFPV---QA---VGGADYIKSLQGPLGHIPLI 156 (187)
T ss_pred CCCCCHHHHHHHHHcCCCEE----cC--cCCHHH-HHHHHHCCCCEEEECcC---Cc---ccCHHHHHHHHhhCCCCcEE
Confidence 0111112211 12 112233 34555699999998432 11 23568999999999 69999
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
+.||| +++++.+.++.|+ .++++++.
T Consensus 157 aiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 157 PTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred EeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 99999 4899999999754 88888764
No 237
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=97.11 E-value=0.011 Score=55.31 Aligned_cols=143 Identities=10% Similarity=0.094 Sum_probs=90.4
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-C-
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-F- 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g- 179 (306)
.|+++.|-|.. +|..+.+.++.||+-|.+..|.=.. ++-...+.++.+...++++.... .+++|-.-+.. |
T Consensus 76 VPVaLHLDHg~--~~e~i~~Ai~~GFtSVMiDgS~l~~----~~~~~~~eeNI~~Trevve~Ah~-~GvsVEaELG~igg 148 (347)
T PRK13399 76 IPICLHQDHGN--SPATCQSAIRSGFTSVMMDGSLLAD----GKTPASYDYNVDVTRRVTEMAHA-VGVSVEGELGCLGS 148 (347)
T ss_pred CcEEEECCCCC--CHHHHHHHHhcCCCEEEEeCCCCCC----CCCccCHHHHHHHHHHHHHHHHH-cCCeEEEEeeeccC
Confidence 67888886554 2333344445688888886553110 11122466778888888877543 47777666642 1
Q ss_pred ---------CC------------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---C----CcHHHHHHHHhhC-CCc
Q psy4398 180 ---------HN------------EADTIALCKRLEACGIIAIGVHGRTKAERPRH---R----NRIEMIRTLTQHL-KIP 230 (306)
Q Consensus 180 ---------~~------------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---p----~~~~~v~~i~~~~-~ip 230 (306)
.. ..+..+..+-+++.|+|.|-+.=.+..+.|.+ | .+++.+++|++.+ ++|
T Consensus 149 ~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vP 228 (347)
T PRK13399 149 LETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTH 228 (347)
T ss_pred cccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCC
Confidence 00 11244444555568999998654444444432 2 6889999999999 799
Q ss_pred EEEecCCCCH----------------------HHHHHHHHhhh
Q psy4398 231 VIANGGSKEI----------------------VDYGGVFSLNC 251 (306)
Q Consensus 231 via~GGI~s~----------------------~~~~~~l~~~v 251 (306)
++..||-..+ ++.+++++.|+
T Consensus 229 LVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI 271 (347)
T PRK13399 229 LVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGV 271 (347)
T ss_pred EEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCC
Confidence 9999997654 66778777765
No 238
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.048 Score=48.91 Aligned_cols=138 Identities=15% Similarity=0.187 Sum_probs=83.2
Q ss_pred CCceEEEecCCC---HHHHHHH----HHH-HhcCCCEEE--EccCCCccccccCCccccccCChHHHHHHHHHHHh--cc
Q psy4398 101 KNKIILQIGTAD---PERALEA----AKK-VEHDVAAID--INMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS--NL 168 (306)
Q Consensus 101 ~~p~ivql~g~~---~~~~~~a----a~~-~~~g~d~ve--ln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~--~~ 168 (306)
+.|+++.+.+++ ++.+-+. .+. +..|+|+|- +|+|+.+ ..+.+.++.+.+.+ ..
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~--------------e~~~i~~~~~v~~~a~~~ 142 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSET--------------EREMIENISQVVEDAHEL 142 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcc--------------hHHHHHHHHHHHHHHHHc
Confidence 568888887752 2222111 122 234777754 5666544 24445555444432 34
Q ss_pred cccEEEEecc-CCC--------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC
Q psy4398 169 SIPVSCKIRV-FHN--------EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239 (306)
Q Consensus 169 ~~pv~vKir~-g~~--------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s 239 (306)
+.|+..=+-. |+. .+.+...++...+.|+|.|-.. |.+ +.+..+++.+...+||+..||=..
T Consensus 143 Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~-------ytg--~~e~F~~vv~~~~vpVviaGG~k~ 213 (265)
T COG1830 143 GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK-------YTG--DPESFRRVVAACGVPVVIAGGPKT 213 (265)
T ss_pred CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec-------CCC--ChHHHHHHHHhCCCCEEEeCCCCC
Confidence 8887763332 222 2335566778889999999652 332 447888888888999999999554
Q ss_pred --HHHHH----HHHHh---hhhhccccCCCC
Q psy4398 240 --IVDYG----GVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 240 --~~~~~----~~l~~---~v~vGrall~~p 261 (306)
.+++. ++++. |+.+||-+++.+
T Consensus 214 ~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~ 244 (265)
T COG1830 214 ETEREFLEMVTAAIEAGAMGVAVGRNIFQHE 244 (265)
T ss_pred CChHHHHHHHHHHHHccCcchhhhhhhhccC
Confidence 33333 33333 569999998755
No 239
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.07 E-value=0.007 Score=65.63 Aligned_cols=94 Identities=17% Similarity=0.085 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC--------CCCCcHHH-HHH
Q psy4398 153 TPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP--------RHRNRIEM-IRT 222 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--------~~p~~~~~-v~~ 222 (306)
.++.+.++|..+|+.. +.||.||+-.+... -.++.-+.++|+|.|+|+|....... .+.+ |++ +.+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v---g~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP-~e~gL~~ 1054 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGV---GTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSP-WELGLAE 1054 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCc---cHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCcc-HHHHHHH
Confidence 4677889999998876 67999999954332 33555667899999999876432221 2221 222 333
Q ss_pred HHhhC-------CCcEEEecCCCCHHHHHHHHHhh
Q psy4398 223 LTQHL-------KIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 223 i~~~~-------~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
+.+.+ ++.+++.||+.+..|+-.++..|
T Consensus 1055 ~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLG 1089 (1485)
T PRK11750 1055 THQALVANGLRHKIRLQVDGGLKTGLDVIKAAILG 1089 (1485)
T ss_pred HHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcC
Confidence 43332 48999999999999988777653
No 240
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.029 Score=50.89 Aligned_cols=101 Identities=12% Similarity=0.143 Sum_probs=69.7
Q ss_pred ccCChHHHHHHHHHHHhcccccEEEEecc-CC---------C---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCC--CC
Q psy4398 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FH---------N---EADTIALCKRLEACGIIAIGVHGRTKAERPR--HR 214 (306)
Q Consensus 150 l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g~---------~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~p 214 (306)
++++.....++++... ..+++|-+-+.. |. + ..+..+..+..+..|+|.|-+.=.+..+.|. .|
T Consensus 111 ~eENi~~tkevv~~ah-~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p 189 (286)
T COG0191 111 FEENIAITKEVVEFAH-AYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNP 189 (286)
T ss_pred HHHHHHHHHHHHHHHH-HcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCC
Confidence 4556667777776654 357777777765 11 1 2235566666777889999864444444443 12
Q ss_pred -CcHHHHHHHHhhCCCcEEEecCCCC-HHHHHHHHHhhh
Q psy4398 215 -NRIEMIRTLTQHLKIPVIANGGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 215 -~~~~~v~~i~~~~~ipvia~GGI~s-~~~~~~~l~~~v 251 (306)
.+++.++++++.+++|++..||-.. .++.++.++.|+
T Consensus 190 ~L~~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~GV 228 (286)
T COG0191 190 KLDFDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGV 228 (286)
T ss_pred CCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHhCc
Confidence 5789999999999999999999764 567888888765
No 241
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.06 E-value=0.023 Score=54.37 Aligned_cols=144 Identities=11% Similarity=0.082 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+.++.. ++||..+-+.+|- .+++.-.+.++++|+.++ +.+.+-...+|+.+++.++
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~ 224 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAY 224 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence 566665555544 5699999997652 123444677888888874 4566666667999999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCCCchH---
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEKLPK--- 265 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p~~~~--- 265 (306)
++.+++.++..+- ++. .+.+++..+++++.+++||.+-=.+.+..++.++++.+..-+..-+-+|...+
T Consensus 225 ~~~l~~~~~~~iE-------eP~-~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GG 296 (385)
T cd03326 225 AKALAPYGLRWYE-------EPG-DPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYG 296 (385)
T ss_pred HHHhhCcCCCEEE-------CCC-CccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCC
Confidence 9999999887774 222 34578999999999999998877788999999998864321111123343332
Q ss_pred ----HHHHHHHHhcCCC
Q psy4398 266 ----TILYAHCKYKRFE 278 (306)
Q Consensus 266 ----~~l~~~~~~~g~~ 278 (306)
+.+.+..+.+|++
T Consensus 297 it~~~kia~lA~a~gi~ 313 (385)
T cd03326 297 LPEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 2566667788876
No 242
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.04 E-value=0.0018 Score=57.15 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh-----hhhhcccc
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL-----NCAFLRNH 257 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~-----~v~vGral 257 (306)
.+..++|+.+.+.|+|.+++-+-.... ..+.++++++++.+.+ |+...|||+|.+++++++.. -+.+|++.
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~--~~~~n~~~i~~i~~~~--~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a 111 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIV--GLGDNFSLLSKLSKRV--ELIADCGVRSPEDLETLPFTLEFASRVVVATET 111 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccccc--CCcchHHHHHHHHhhC--cEEEcCccCCHHHHHHHHhhhccceEEeecChh
Confidence 467899999999999999987665432 3456899999999985 99999999999999998542 23889999
Q ss_pred CCCCCc
Q psy4398 258 YPVEKL 263 (306)
Q Consensus 258 l~~p~~ 263 (306)
+.||.+
T Consensus 112 ~~~p~~ 117 (221)
T TIGR00734 112 LDITEL 117 (221)
T ss_pred hCCHHH
Confidence 999843
No 243
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.99 E-value=0.036 Score=48.90 Aligned_cols=139 Identities=15% Similarity=0.213 Sum_probs=94.4
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEec
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIR 177 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir 177 (306)
+..+|...+...+.+-.+++++ |+|.+-+.+- +|| .-+--++++++|+. ++.|+.|=+=
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN---------------~tfg~~~i~~lr~~~~~~~~dvHLM 70 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPN---------------LTIGPMVCQALRKHGITAPIDVHLM 70 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC---------------cccCHHHHHHHHhhCCCCCEEEEec
Confidence 6678889998888888888875 8988766532 344 22334578888887 5888887766
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCCC
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERPR 212 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~~ 212 (306)
. ++...+++.+.++|+|.|++|.-.. ..++.
T Consensus 71 v----~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~ 146 (223)
T PRK08745 71 V----EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFG 146 (223)
T ss_pred c----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCC
Confidence 3 2355677888889999999875310 11111
Q ss_pred C----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 213 H----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 213 ~----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
| +..++-++++++.. ++.|-.-|||+ .+++..+.++|+ .+|++++..+.
T Consensus 147 GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 147 GQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFNAPD 207 (223)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 1 12344555555542 35678889987 889999988875 89999986443
No 244
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.98 E-value=0.012 Score=53.14 Aligned_cols=119 Identities=20% Similarity=0.250 Sum_probs=84.1
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
|+.+++ |+-+|..-=--|..- ++ .-|-.-.+.++. |+++++.+++||+-+++.+. ..-++.|.++|+|
T Consensus 21 a~~ae~aga~~v~~~~~~~~~~-~~-~~~v~R~~~~~~----I~~Ik~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvD 89 (283)
T cd04727 21 ARIAEEAGAVAVMALERVPADI-RA-AGGVARMADPKM----IKEIMDAVSIPVMAKVRIGH-----FVEAQILEALGVD 89 (283)
T ss_pred HHHHHHcCceEEeeeccCchhh-hh-cCCeeecCCHHH----HHHHHHhCCCCeEEeeehhH-----HHHHHHHHHcCCC
Confidence 455654 877776633345542 22 223444566654 56677888999999999432 7778999999999
Q ss_pred EEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccC
Q psy4398 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHY 258 (306)
Q Consensus 199 ~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall 258 (306)
.|..|.+.+ | .-+.+..+++.+++|++ .++.|.+++....+.|+ ++|+.+.
T Consensus 90 iIDaT~r~r------P-~~~~~~~iK~~~~~l~M--AD~stleEal~a~~~Gad~I~TTl~ 141 (283)
T cd04727 90 MIDESEVLT------P-ADEEHHIDKHKFKVPFV--CGARNLGEALRRISEGAAMIRTKGE 141 (283)
T ss_pred EEeccCCCC------c-HHHHHHHHHHHcCCcEE--ccCCCHHHHHHHHHCCCCEEEecCC
Confidence 995443321 2 45688899988887776 58899999999999887 8888874
No 245
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.97 E-value=0.049 Score=51.37 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=105.9
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
.|+-..+...++++..+.++.. +.||..+-+.+|.+..+. +. ..+++.-.+.++++|+.++ +.+.|-...
T Consensus 113 i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~--~~-----~~~~~~D~~~i~avr~~~g~~~~l~vDaN~ 185 (352)
T cd03325 113 VRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWI--DT-----SKKVDAAVERVAALREAVGPDIDIGVDFHG 185 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccC--CC-----HHHHHHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 4555555556777776555544 459999999887432110 00 0134555778888888874 445555555
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
+|+.+++.++++.+++.|+.+|- ++. .+.+++..+++++.+++||.+.=-+.+.+++..+++.+. -..+-
T Consensus 186 ~~~~~~A~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~--~d~v~ 255 (352)
T cd03325 186 RVSKPMAKDLAKELEPYRLLFIE-------EPV-LPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGA--VDIIQ 255 (352)
T ss_pred CCCHHHHHHHHHhccccCCcEEE-------CCC-CccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCC--CCEEe
Confidence 68999999999999999988874 222 234788899999999999887666788889888877532 00111
Q ss_pred CCC-C----chHHHHHHHHHhcCCCCC
Q psy4398 259 PVE-K----LPKTILYAHCKYKRFEVP 280 (306)
Q Consensus 259 ~~p-~----~~~~~l~~~~~~~g~~~~ 280 (306)
-+| . ..-..+.+..+++|+++.
T Consensus 256 ~d~~~~GGit~~~~~~~lA~~~gi~~~ 282 (352)
T cd03325 256 PDISHAGGITELKKIAAMAEAYDVALA 282 (352)
T ss_pred cCccccCCHHHHHHHHHHHHHcCCcEe
Confidence 122 1 112366777888888844
No 246
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.96 E-value=0.017 Score=50.04 Aligned_cols=143 Identities=14% Similarity=0.128 Sum_probs=80.2
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccc----ccCCc-----cccccCChHHHHHHHHHHHhccccc
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFS----LTGGM-----GAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~----~~~~~-----G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+++.=|.+.++++..+.++.+.+ |+..||+.+..|..-. .+..| |..-.-+++.+.+.+++ +-.
T Consensus 4 ~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a-----GA~ 78 (201)
T PRK06015 4 QPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA-----GSR 78 (201)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc-----CCC
Confidence 467777889999999999997765 9999999988775210 00001 11111122222222111 111
Q ss_pred EEEEeccCCChH----------------HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEe
Q psy4398 172 VSCKIRVFHNEA----------------DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIAN 234 (306)
Q Consensus 172 v~vKir~g~~~~----------------~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~ 234 (306)
+. ++++.+.+ -+..-+..+.++|++.|-+..-.. ..+ ..+++.++.-+ ++|++.+
T Consensus 79 Fi--vSP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~---~GG---~~yikal~~plp~~~l~pt 150 (201)
T PRK06015 79 FI--VSPGTTQELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQ---AGG---AAFLKALSSPLAGTFFCPT 150 (201)
T ss_pred EE--ECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchh---hCC---HHHHHHHHhhCCCCcEEec
Confidence 11 11111110 011122233457777777754211 112 37889998888 7999999
Q ss_pred cCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 235 GGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
|||+ .+++.+.++.+. ..|+.+.
T Consensus 151 GGV~-~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 151 GGIS-LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred CCCC-HHHHHHHHhCCCeEEEEchhhC
Confidence 9986 688889888743 3355555
No 247
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.93 E-value=0.02 Score=53.73 Aligned_cols=146 Identities=8% Similarity=0.045 Sum_probs=87.3
Q ss_pred HHHh-cCCCEEEEccCCCccccccCCcccccc-----CChHHHHHHHHHHHhcccccEEEEe-c-c-C-----------C
Q psy4398 121 KKVE-HDVAAIDINMGCPKQFSLTGGMGAALL-----STPDIACNILTTLISNLSIPVSCKI-R-V-F-----------H 180 (306)
Q Consensus 121 ~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~-----~~~~~~~eiv~~v~~~~~~pv~vKi-r-~-g-----------~ 180 (306)
+.+. .|+|+|-+++-. |..-. .+.+.+.++.++.++ .++|+.+-+ . . + .
T Consensus 113 e~a~~~GAdAVk~lv~~----------~~d~~~~~~~~~~~~l~rv~~ec~~-~giPlllE~l~y~~~~~~~~~~~~a~~ 181 (340)
T PRK12858 113 RRIKEAGADAVKLLLYY----------RPDEDDAINDRKHAFVERVGAECRA-NDIPFFLEPLTYDGKGSDKKAEEFAKV 181 (340)
T ss_pred HHHHHcCCCEEEEEEEe----------CCCcchHHHHHHHHHHHHHHHHHHH-cCCceEEEEeccCCCcccccccccccc
Confidence 4454 599998886442 21100 122344555554433 389988852 2 1 1 1
Q ss_pred ChHHHHHHHHHHHH--cCCcEEEEcccC----CCCC------CCCCCcHHHHHHHHhhCCCcEEE-ecCCCCHHHHHHHH
Q psy4398 181 NEADTIALCKRLEA--CGIIAIGVHGRT----KAER------PRHRNRIEMIRTLTQHLKIPVIA-NGGSKEIVDYGGVF 247 (306)
Q Consensus 181 ~~~~~~~~a~~l~~--~G~d~i~v~~~~----~~~~------~~~p~~~~~v~~i~~~~~ipvia-~GGI~s~~~~~~~l 247 (306)
.++...+.++.+.+ .|+|.+-+.-.. .++. |......+.++++.+..++|+|. +||+ |.+++.+.+
T Consensus 182 ~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l 260 (340)
T PRK12858 182 KPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTL 260 (340)
T ss_pred CHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHH
Confidence 23457788899985 999999873211 1110 11111235677778888899665 7776 556665555
Q ss_pred Hh---------hhhhccccCCCC--Cc---hHHHHHHHHHhcCCC
Q psy4398 248 SL---------NCAFLRNHYPVE--KL---PKTILYAHCKYKRFE 278 (306)
Q Consensus 248 ~~---------~v~vGrall~~p--~~---~~~~l~~~~~~~g~~ 278 (306)
+. |+.+||++++++ .+ ....+++||...|.+
T Consensus 261 ~~A~~aGa~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~~g~~ 305 (340)
T PRK12858 261 EFACEAGADFSGVLCGRATWQDGIEPYAAEGEEARRAWLNTEGVA 305 (340)
T ss_pred HHHHHcCCCccchhhhHHHHhhhhccccCCCHHHHHHHHHHHhHH
Confidence 42 669999999987 22 234888999888865
No 248
>PRK14017 galactonate dehydratase; Provisional
Probab=96.91 E-value=0.057 Score=51.53 Aligned_cols=162 Identities=16% Similarity=0.124 Sum_probs=107.6
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
.|+...++..+++++.+.++.+ ++||..+-+..+-+.. ..++ ..+++.-.+.++++|+.++ +.+.+-...
T Consensus 114 i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~-----~~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDaN~ 186 (382)
T PRK14017 114 IRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQ-----YIDS--PRKVDAAVARVAAVREAVGPEIGIGVDFHG 186 (382)
T ss_pred eeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCcc-----cccc--HHHHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 4555555566888876655544 4699999997542110 0000 1234555778899998874 455555555
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
+|+.+++.++++.+++.|+..|- ++. .+.+++..+++++.+++||.+.=.+.+..+++.+++.+. ...+-
T Consensus 187 ~w~~~~A~~~~~~l~~~~~~~iE-------eP~-~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a--~d~v~ 256 (382)
T PRK14017 187 RVHKPMAKVLAKELEPYRPMFIE-------EPV-LPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGG--VDIIQ 256 (382)
T ss_pred CCCHHHHHHHHHhhcccCCCeEE-------CCC-CcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCC--CCeEe
Confidence 78999999999999999988774 222 245788899999999999988777889999999988642 01111
Q ss_pred CCC-Cc----hHHHHHHHHHhcCCCCC
Q psy4398 259 PVE-KL----PKTILYAHCKYKRFEVP 280 (306)
Q Consensus 259 ~~p-~~----~~~~l~~~~~~~g~~~~ 280 (306)
-++ .. .-+.+.++.+++|++..
T Consensus 257 ~d~~~~GGit~~~~ia~~A~~~gi~~~ 283 (382)
T PRK14017 257 PDLSHAGGITECRKIAAMAEAYDVALA 283 (382)
T ss_pred cCccccCCHHHHHHHHHHHHHcCCeEe
Confidence 122 11 12366777888887743
No 249
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=96.89 E-value=0.034 Score=52.83 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~ 188 (306)
..+.+.++++.+. .||+.+-+..+++... .-.+.++++|++++ ..+.+-...+|+.++..++
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~ 207 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWTLEEAIRL 207 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHH
Confidence 6777888888776 5999999999886531 44567888888875 4555555557898999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++.+++.+..++- + +..+.+++..+++++.+++||.+.=-+.+..+++++++.+
T Consensus 208 ~~~l~~~~l~~iE-------e-P~~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~ 261 (372)
T COG4948 208 ARALEEYGLEWIE-------E-PLPPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAG 261 (372)
T ss_pred HHHhcccCcceEE-------C-CCCccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcC
Confidence 9999999977663 2 2234578888999998889998888899999999988864
No 250
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.88 E-value=0.055 Score=49.51 Aligned_cols=185 Identities=14% Similarity=0.130 Sum_probs=104.0
Q ss_pred cccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhh-cccccccccCCCCCceeeecCCCCCCceE
Q psy4398 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN-DLLNTIDFVDPLDGSVVFRTCPREKNKII 105 (306)
Q Consensus 27 l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~p~i 105 (306)
+.-++..+++|.+ -|..=..++.+.|+..++|-...... ..+ .++ ++++-.+..+ ...+.....+.|++
T Consensus 8 l~~~~~~l~~p~~--~Da~SAri~e~aGf~Ai~~sg~~~a~-~lG--~pD~g~lt~~e~~~-----~~~~I~~~~~iPvi 77 (285)
T TIGR02317 8 ALAKEDILQIPGA--INAMAALLAERAGFEAIYLSGAAVAA-SLG--LPDLGITTLDEVAE-----DARRITRVTDLPLL 77 (285)
T ss_pred HHhCCCcEEeCCC--CCHHHHHHHHHcCCCEEEEcHHHHHH-hCC--CCCCCCCCHHHHHH-----HHHHHHhccCCCEE
Confidence 3334556677776 23333345668899887775433221 111 111 1111101100 01112223467999
Q ss_pred EEec--CCCHHHHHHHHHHHh-cCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc--
Q psy4398 106 LQIG--TADPERALEAAKKVE-HDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV-- 178 (306)
Q Consensus 106 vql~--g~~~~~~~~aa~~~~-~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~-- 178 (306)
+-+- -.++.+..+..+.+. .|+.+|.|.=.. |. +.+..++.-.-.++...+-|++++++. +.++.+=-|.
T Consensus 78 aD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK---~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa 154 (285)
T TIGR02317 78 VDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPK---RCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDA 154 (285)
T ss_pred EECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc---ccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCc
Confidence 9873 245888888888776 499999995332 21 111122222224444444455555543 3444444443
Q ss_pred --CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 179 --FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 179 --g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
....+++++=++...++|+|.|-+++. .+.+.++++.+.++.|++.
T Consensus 155 ~~~~g~deAI~Ra~ay~~AGAD~vfi~g~---------~~~e~i~~~~~~i~~Pl~~ 202 (285)
T TIGR02317 155 RAVEGLDAAIERAKAYVEAGADMIFPEAL---------TSLEEFRQFAKAVKVPLLA 202 (285)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhcCCCEEE
Confidence 234677888899999999999998752 3568889999999889843
No 251
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.86 E-value=0.012 Score=55.32 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=54.5
Q ss_pred HHHHHHHcCCcEEEEcccCCC--CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 188 LCKRLEACGIIAIGVHGRTKA--ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~--~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
-+..+.+.|+|+|.+...... .....|..++.++.+++.+++||++-|||+ .+++.++++. +++++++++..
T Consensus 252 e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 252 EMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVLQAGAKRVAVVRAIMGA 328 (347)
T ss_pred HHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCcEEEEeHHHhCC
Confidence 345556789999998654322 111235678999999999999999999996 8899998876 45899998864
No 252
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.86 E-value=0.14 Score=46.83 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=79.5
Q ss_pred CCCCceEEEec-CCCHHHHHHHHHHHh-cCCCEEEEccCC-CccccccCCcccc---ccCChHHHHHHHHHHHhc-c--c
Q psy4398 99 REKNKIILQIG-TADPERALEAAKKVE-HDVAAIDINMGC-PKQFSLTGGMGAA---LLSTPDIACNILTTLISN-L--S 169 (306)
Q Consensus 99 ~~~~p~ivql~-g~~~~~~~~aa~~~~-~g~d~veln~gc-P~~~~~~~~~G~~---l~~~~~~~~eiv~~v~~~-~--~ 169 (306)
....|+++-+- |.++....+..+.+. .|+.+|.|.=.+ |. +...+|+. ..-..+...+.+++++++ . +
T Consensus 76 a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk---~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~ 152 (285)
T TIGR02320 76 VTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLK---KNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTED 152 (285)
T ss_pred hcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCc---cccccCCCCcccccCHHHHHHHHHHHHHhccCCC
Confidence 34678888773 467888888888765 599999993221 11 11112221 223455556666666654 3 4
Q ss_pred ccEEEEecc---CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-----CCcEEEec
Q psy4398 170 IPVSCKIRV---FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-----KIPVIANG 235 (306)
Q Consensus 170 ~pv~vKir~---g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-----~ipvia~G 235 (306)
++|..+.-. +...+++++-++...++|||.|-+.+. +.+.+.+.++.+.+ ++|++.+.
T Consensus 153 ~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~--------~~~~~ei~~~~~~~~~~~p~~pl~~~~ 218 (285)
T TIGR02320 153 FMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSR--------KKDPDEILEFARRFRNHYPRTPLVIVP 218 (285)
T ss_pred eEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCC--------CCCHHHHHHHHHHhhhhCCCCCEEEec
Confidence 566666221 235788999999999999999998731 12446666666666 46888765
No 253
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.85 E-value=0.026 Score=51.53 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++-+. |-...-..+.-.++++.+.+.+ ..||.+-+.. .+.+++++
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~Gst----------GE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~ 86 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTT----------GESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIE 86 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC----------cchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHH
Confidence 45677777777665 599999997332 2222223344455666665555 3678877763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia------~GGI~s~~~~~~~l~ 248 (306)
+++.++++|+|++.+...... ......-+++.++|.+++++||+. .|-.-|++..+++.+
T Consensus 87 ~a~~a~~~G~d~v~~~~P~~~-~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 87 LTKRAEKAGADAALVVTPYYN-KPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred HHHHHHHcCCCEEEEcccccC-CCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence 999999999999998753211 111112356778888888888773 344556777776664
No 254
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.85 E-value=0.044 Score=51.76 Aligned_cols=142 Identities=8% Similarity=0.098 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+-++.. +.||..+-+.++. +++.-.+.++++|+.++ +.+.+-...+|+.+++.++
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg~----------------~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~ 201 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIGR----------------DPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALAL 201 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCC----------------CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence 567666655544 4699999996541 23455678888898884 4565655557999999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCCC----
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH--LKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEK---- 262 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~--~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p~---- 262 (306)
++.+++.++..+ +++. .+.+++-.+++++. +++||.+.=.+.+..++.++++.+. .-+-+|.
T Consensus 202 ~~~l~~~~~~~~-------EeP~-~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a----~div~~d~~~~ 269 (352)
T cd03328 202 ARAFADEGVTWF-------EEPV-SSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHA----VDVLQADVTRC 269 (352)
T ss_pred HHHHHHhCcchh-------hCCC-ChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCC----CCEEecCcccc
Confidence 999999887655 2222 34578899999999 8899988777889999999988532 1111221
Q ss_pred ---chHHHHHHHHHhcCCCCCc
Q psy4398 263 ---LPKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 263 ---~~~~~l~~~~~~~g~~~~~ 281 (306)
..-+.+.+..+.+|++...
T Consensus 270 GGit~~~~ia~~A~a~gi~~~~ 291 (352)
T cd03328 270 GGVTGFLQAAALAAAHHVDLSA 291 (352)
T ss_pred CCHHHHHHHHHHHHHcCCeecc
Confidence 1122566667777777444
No 255
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=96.83 E-value=0.027 Score=50.90 Aligned_cols=158 Identities=19% Similarity=0.282 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeec-CCCCCC-ceEEEec-C---CCH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRT-CPREKN-KIILQIG-T---ADP 113 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~-p~ivql~-g---~~~ 113 (306)
+.-|.....++.+.|+..+.|........ .+.+.. ..++-.+.. ...+. ....+. ++++-+- + .++
T Consensus 21 tayD~~sArl~e~aG~d~i~vGds~~~~~-lG~~Dt-~~vtl~em~------~h~~~V~r~~~~p~vvaD~pfg~y~~~~ 92 (264)
T PRK00311 21 TAYDYPFAKLFDEAGVDVILVGDSLGMVV-LGYDST-LPVTLDDMI------YHTKAVARGAPRALVVADMPFGSYQASP 92 (264)
T ss_pred eCCCHHHHHHHHHcCCCEEEECHHHHHHH-cCCCCC-CCcCHHHHH------HHHHHHHhcCCCCcEEEeCCCCCccCCH
Confidence 34677777778899999988752211110 110100 000000000 00011 111233 3666662 2 356
Q ss_pred HHH-HHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE---------------EEe
Q psy4398 114 ERA-LEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS---------------CKI 176 (306)
Q Consensus 114 ~~~-~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~---------------vKi 176 (306)
++. ..+.+.++ .|+++|.|-- | +...+.|+++++. ++||. .|+
T Consensus 93 ~~av~~a~r~~~~aGa~aVkiEd------------g-------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i 152 (264)
T PRK00311 93 EQALRNAGRLMKEAGAHAVKLEG------------G-------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKV 152 (264)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcC------------c-------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeee
Confidence 664 44555666 4999999941 1 2345566666543 78875 222
Q ss_pred ccCCC---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 177 RVFHN---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 177 r~g~~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
.|-+ .+++++-++.++++||+.|.+-+. | . +.+++|.+.+++|+|+-|.
T Consensus 153 -~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v--------~-~-~~~~~i~~~l~iP~igiGa 204 (264)
T PRK00311 153 -QGRDEEAAEKLLEDAKALEEAGAFALVLECV--------P-A-ELAKEITEALSIPTIGIGA 204 (264)
T ss_pred -ecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC--------C-H-HHHHHHHHhCCCCEEEecc
Confidence 1223 235788899999999999998653 2 2 7889999999999998875
No 256
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.82 E-value=0.024 Score=52.58 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++.+. |....-..+.-.++++.+.+.+ .+||.+-+.. .+.+++++
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~Gst----------GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~ 94 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTF----------GECATLTWEEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIA 94 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------ccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHH
Confidence 45677777777664 599999997442 2222233444455666555545 4788888773 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEE
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIA 233 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia 233 (306)
+++.+++.|+|++.+....-. ......-.++.+.|.+++ ++||+.
T Consensus 95 ~a~~A~~~Gad~vlv~~P~y~-~~~~~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 95 RTRALLDLGADGTMLGRPMWL-PLDVDTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred HHHHHHHhCCCEEEECCCcCC-CCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 999999999999998754210 011112356667777777 577663
No 257
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.82 E-value=0.025 Score=52.20 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|.|+|=++-+. |-...-..+.-.++++.+++.+ .+||++.+.. .+.+++++
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~Gtt----------GE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~eai~ 90 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTT----------GESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAEAIE 90 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC----------ccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHHHHH
Confidence 45677788777665 599999996442 2222234444466677777666 3678887773 45788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCC---CcHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHR---NRIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p---~~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..| ...+..+.|.+++++|+|.= |--.+++.+..+.+
T Consensus 91 lak~a~~~Gad~il~v~Py----Y~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 91 LAKHAEKLGADGILVVPPY----YNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred HHHHHHhcCCCEEEEeCCC----CcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 9999999999999986432 2222 23567788888888886643 33345666666554
No 258
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=96.80 E-value=0.079 Score=50.19 Aligned_cols=145 Identities=11% Similarity=0.129 Sum_probs=98.9
Q ss_pred ceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccC
Q psy4398 103 KIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVF 179 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g 179 (306)
|+-....+.+++++.+.++.. ++||..+-+.+ .+.++++|+.++ +.+.+-...+
T Consensus 117 ~~ya~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN~~ 173 (361)
T cd03322 117 MVYSHASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVHHR 173 (361)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECCCC
Confidence 444334455677775555544 45999988843 567888998884 4555555556
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCC
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYP 259 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~ 259 (306)
|+.+++.++++.+++.++.++- ++. .+.+++..+++++..++||.+.=.+.+.++++.+++.+. ...+--
T Consensus 174 w~~~~A~~~~~~l~~~~l~~iE-------eP~-~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~di~~~ 243 (361)
T cd03322 174 LTPNQAARFGKDVEPYRLFWME-------DPT-PAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERL--IDYIRT 243 (361)
T ss_pred CCHHHHHHHHHHhhhcCCCEEE-------CCC-CcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CCEEec
Confidence 8999999999999999888774 222 245788999999999999888767888999999887632 000111
Q ss_pred CC-C----chHHHHHHHHHhcCCCCC
Q psy4398 260 VE-K----LPKTILYAHCKYKRFEVP 280 (306)
Q Consensus 260 ~p-~----~~~~~l~~~~~~~g~~~~ 280 (306)
++ . ..-+.+.+..+++|++..
T Consensus 244 d~~~~GGit~~~~ia~~A~~~gi~~~ 269 (361)
T cd03322 244 TVSHAGGITPARKIADLASLYGVRTG 269 (361)
T ss_pred CccccCCHHHHHHHHHHHHHcCCeee
Confidence 22 1 112366777888888743
No 259
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=96.80 E-value=0.12 Score=46.60 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeec-CCCCCCc-eEEEec-C---CCH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRT-CPREKNK-IILQIG-T---ADP 113 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~p-~ivql~-g---~~~ 113 (306)
+.-|.....++.+.|+..+.|........ .+.+.. +.++-.+.. ...+. ....+.| +++-+. + +++
T Consensus 18 ~ayD~~sA~l~e~aG~d~i~vGds~~~~~-lG~pDt-~~vtl~em~------~~~~~V~r~~~~p~viaD~~fg~y~~~~ 89 (254)
T cd06557 18 TAYDYPTAKLADEAGVDVILVGDSLGMVV-LGYDST-LPVTLDEMI------YHTRAVRRGAPRALVVADMPFGSYQTSP 89 (254)
T ss_pred eCCCHHHHHHHHHcCCCEEEECHHHHHHH-cCCCCC-CCcCHHHHH------HHHHHHHhcCCCCeEEEeCCCCcccCCH
Confidence 34577777778889999888763211110 111100 000000000 00111 1123456 555553 2 357
Q ss_pred HHHHHHHH-HHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-------------
Q psy4398 114 ERALEAAK-KVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------------- 178 (306)
Q Consensus 114 ~~~~~aa~-~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------------- 178 (306)
++..+.+. .++ .|+++|.|-- | ....+.|++++++ ++||..=+.+
T Consensus 90 ~~av~~a~r~~~~aGa~aVkiEd------------~-------~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~ 149 (254)
T cd06557 90 EQALRNAARLMKEAGADAVKLEG------------G-------AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKV 149 (254)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcC------------c-------HHHHHHHHHHHHc-CCCeeccccccceeeeccCCcee
Confidence 77666554 556 5999999941 1 2445556666543 6776622221
Q ss_pred -CCC---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 -FHN---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 -g~~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
|-+ .+++++-++.++++|||.|.+-+. | . +.+++|.+.+++|+|+-|.
T Consensus 150 ~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v--------~-~-~~~~~i~~~v~iP~igiGa 201 (254)
T cd06557 150 QGKTEEEAERLLEDALALEEAGAFALVLECV--------P-A-ELAKEITEALSIPTIGIGA 201 (254)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC--------C-H-HHHHHHHHhCCCCEEEecc
Confidence 112 245788899999999999998653 2 2 6889999999999998875
No 260
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=96.77 E-value=0.026 Score=51.76 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++-+. |-...-..+.-.++++.+.+.+ .+||.+-+. .+..++++
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~Gst----------GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~--~~t~~~i~ 85 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGT----------GEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG--YGTATAIA 85 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCC----------cCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC--CCHHHHHH
Confidence 35567777777654 599999996442 1111122233344444444443 478998886 47889999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe--cC-CCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN--GG-SKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~--GG-I~s~~~~~~~l~ 248 (306)
+++.++++|+|++.+....-. ......-.++.+.|.+++++||+.= -| --+++...++.+
T Consensus 86 ~a~~a~~~Gad~v~~~pP~y~-~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 86 YAQAAEKAGADGILLLPPYLT-EAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999998543211 0111112566788888888886653 22 234555555544
No 261
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=96.75 E-value=0.027 Score=52.06 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++.+. |-...-..+.-.++++.+.+.+ .+||.+-+. .+..++++
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~Gst----------GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~~i~ 92 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGT----------GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQAIE 92 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCC----------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHHHHH
Confidence 35567777777664 599999997442 2222223333345555554444 478888886 47889999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe--cCC-CCHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN--GGS-KEIVDYGGVF 247 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~--GGI-~s~~~~~~~l 247 (306)
+++.+++.|+|++.+....-. ......-.++.+.+.+++++||+.= .|+ -+++...++.
T Consensus 93 ~~~~a~~~Gadav~~~pP~y~-~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 93 YAQAAERAGADGILLLPPYLT-EAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999998653211 1111113466778888888886542 222 2555555554
No 262
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=96.74 E-value=0.029 Score=51.59 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+|+|=++-+. |-...-..+.-.++++.+.+.+ ..||.+-+. .+.+++++
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~Gst----------GE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ai~ 90 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGT----------GEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSDAIE 90 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCCC----------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHHHHH
Confidence 45677887777664 599999996442 2122223333344555554444 478888886 46889999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe--cC-CCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN--GG-SKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~--GG-I~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+....-. ..+...-.++.++|.+++++||+.= -| --+++...++.+
T Consensus 91 ~a~~a~~~Gadav~~~pP~y~-~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 91 IARLAEKAGADGYLLLPPYLI-NGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999988653211 1111123567788888888896543 23 235666666654
No 263
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.73 E-value=0.018 Score=50.46 Aligned_cols=142 Identities=13% Similarity=0.189 Sum_probs=81.7
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc-----cc----cCCccccccCChHHH--------------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF-----SL----TGGMGAALLSTPDIA-------------- 157 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~-----~~----~~~~G~~l~~~~~~~-------------- 157 (306)
.+++.=+.+.++++..+.++.+.+ |++.||+-+..|... .+ +-.-|..---+++.+
T Consensus 15 ~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 15 GPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 467777889999999999998876 899999987766421 00 000111111111111
Q ss_pred ---HHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEE
Q psy4398 158 ---CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIA 233 (306)
Q Consensus 158 ---~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia 233 (306)
.++++..++ .++|+.-.+ .+ .-| +..+.++|++.+-+.+-.. . + ...+++.++.-+ ++|++.
T Consensus 95 ~~~~~vi~~a~~-~~i~~iPG~---~T---ptE-i~~a~~~Ga~~vKlFPa~~---~-g--g~~~lk~l~~p~p~~~~~p 160 (212)
T PRK05718 95 GLTPPLLKAAQE-GPIPLIPGV---ST---PSE-LMLGMELGLRTFKFFPAEA---S-G--GVKMLKALAGPFPDVRFCP 160 (212)
T ss_pred CCCHHHHHHHHH-cCCCEeCCC---CC---HHH-HHHHHHCCCCEEEEccchh---c-c--CHHHHHHHhccCCCCeEEE
Confidence 122222111 111111110 11 223 5556678888888754211 1 1 347888888888 799999
Q ss_pred ecCCCCHHHHHHHHHhh-h-hhccccC
Q psy4398 234 NGGSKEIVDYGGVFSLN-C-AFLRNHY 258 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~-v-~vGrall 258 (306)
+|||+ .+++.+.++.+ + .+|...+
T Consensus 161 tGGV~-~~ni~~~l~ag~v~~vggs~L 186 (212)
T PRK05718 161 TGGIS-PANYRDYLALPNVLCIGGSWM 186 (212)
T ss_pred eCCCC-HHHHHHHHhCCCEEEEEChHh
Confidence 99986 68899999875 2 4444444
No 264
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.72 E-value=0.099 Score=48.02 Aligned_cols=189 Identities=14% Similarity=0.059 Sum_probs=105.4
Q ss_pred cccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCce
Q psy4398 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKI 104 (306)
Q Consensus 25 ~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ 104 (306)
..+.-++..+++|.+ -|..=..++.+.|+..++|-.........+.+ ..++++-.+... ...+.....+.|+
T Consensus 10 r~ll~~~~~l~~p~~--~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~P-D~g~l~~~e~~~-----~~~~I~~~~~iPv 81 (292)
T PRK11320 10 RAALAAEKPLQIVGT--INAYHALLAERAGFKAIYLSGGGVAAASLGLP-DLGITTLDDVLI-----DVRRITDACDLPL 81 (292)
T ss_pred HHHHcCCCcEEecCC--CCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCC-CCCCCCHHHHHH-----HHHHHHhccCCCE
Confidence 444345556677766 34443445668899777665432211111111 001211111110 0111122345799
Q ss_pred EEEecC--CCHHHHHHHHHHHhc-CCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc-
Q psy4398 105 ILQIGT--ADPERALEAAKKVEH-DVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV- 178 (306)
Q Consensus 105 ivql~g--~~~~~~~~aa~~~~~-g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~- 178 (306)
++-+-. .++....+..+.+.+ |+.+|.|-=.. |. +.+..++.-.-.++...+=|++++++. +.++.+=-|.
T Consensus 82 iaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK---~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTD 158 (292)
T PRK11320 82 LVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAK---RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTD 158 (292)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc---ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecC
Confidence 998732 388888888887764 99999994322 22 111122222234444444455555543 4445544442
Q ss_pred ---CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 179 ---FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 179 ---g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
....++.++=++...++|+|.|-+++. .+.+.++++.+.++.|+++
T Consensus 159 a~~~~g~deAI~Ra~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~~~Pl~~ 207 (292)
T PRK11320 159 ALAVEGLDAAIERAQAYVEAGADMIFPEAM---------TELEMYRRFADAVKVPILA 207 (292)
T ss_pred cccccCHHHHHHHHHHHHHcCCCEEEecCC---------CCHHHHHHHHHhcCCCEEE
Confidence 234677888899999999999998763 3578899999999989844
No 265
>PRK06852 aldolase; Validated
Probab=96.69 E-value=0.26 Score=45.47 Aligned_cols=101 Identities=15% Similarity=0.029 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcccccEEEEecc-C------CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-C
Q psy4398 157 ACNILTTLISNLSIPVSCKIRV-F------HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-K 228 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~-g------~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ 228 (306)
+.+++++. +..++|+.+=+-. | .+++.....++...+.|+|.|-+.-.+..+ ..+.+.++++.+.. .
T Consensus 156 l~~v~~ea-~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~----~g~~e~f~~vv~~~g~ 230 (304)
T PRK06852 156 AAQIIYEA-HKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEG----ANPAELFKEAVLAAGR 230 (304)
T ss_pred HHHHHHHH-HHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCC----CCCHHHHHHHHHhCCC
Confidence 34444433 2358998762221 2 233457788899999999999874321111 02447778888888 8
Q ss_pred CcEEEecCCC-CHHH----HHHHHH-h---hhhhccccCCCCC
Q psy4398 229 IPVIANGGSK-EIVD----YGGVFS-L---NCAFLRNHYPVEK 262 (306)
Q Consensus 229 ipvia~GGI~-s~~~----~~~~l~-~---~v~vGrall~~p~ 262 (306)
+||+..||=. +.++ .+++++ . |+.+||-+++.|.
T Consensus 231 vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 231 TKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC
Confidence 9999999955 3222 344444 3 5699999998763
No 266
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.69 E-value=0.077 Score=46.32 Aligned_cols=142 Identities=22% Similarity=0.247 Sum_probs=83.3
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
++.+-+--.+.++..+.++.+....+.|+++..+=. .+| .++++.+|+...+++++|+-.-.
T Consensus 5 ~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l~~------~~G----------~~~v~~ir~~~~i~~D~k~~di~-- 66 (215)
T PRK13813 5 RIILALDVTDRERALKIAEELDDYVDAIKVGWPLVL------ASG----------LGIIEELKRYAPVIADLKVADIP-- 66 (215)
T ss_pred CEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHHHH------hhC----------HHHHHHHHhcCCEEEEeeccccH--
Confidence 566666566666666555555445688888744300 122 35677778766788889987211
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC-------------CC--------------------------------CC----CC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK-------------AE--------------------------------RP----RH 213 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~-------------~~--------------------------------~~----~~ 213 (306)
......++.+.++|+|++++|.... .+ +. ..
T Consensus 67 ~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~ 146 (215)
T PRK13813 67 NTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAP 146 (215)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEC
Confidence 2233445777789999999875320 00 00 00
Q ss_pred CCcHHHHHHHHhhCCCc-EEEecCCCCH-HHHHHHHHhh---hhhccccCCCCC
Q psy4398 214 RNRIEMIRTLTQHLKIP-VIANGGSKEI-VDYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 214 p~~~~~v~~i~~~~~ip-via~GGI~s~-~~~~~~l~~~---v~vGrall~~p~ 262 (306)
+..++-++++++..+-+ .+..|||+.. .++.++++.| +.+||+++..+.
T Consensus 147 ~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d 200 (215)
T PRK13813 147 ATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKAGADYVIVGRSIYNAAD 200 (215)
T ss_pred CCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCC
Confidence 11234445666665433 3477998853 1356666654 499999997654
No 267
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.68 E-value=0.027 Score=50.88 Aligned_cols=138 Identities=15% Similarity=0.159 Sum_probs=79.4
Q ss_pred CCceEEEecCCC-----H--HH-HHHHHHHHhcCCCEEEEc--cCCCccccccCCccccccCChHHHHHHHHHHHhcccc
Q psy4398 101 KNKIILQIGTAD-----P--ER-ALEAAKKVEHDVAAIDIN--MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI 170 (306)
Q Consensus 101 ~~p~ivql~g~~-----~--~~-~~~aa~~~~~g~d~veln--~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~ 170 (306)
+.|+++.|.+++ + +. +...-+.++.|+|+|-++ +|++.. .+..+.+.++++.. +..++
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E-----------~~~l~~l~~v~~ea-~~~G~ 141 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYE-----------HQSIKNIIQLVDAG-LRYGM 141 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHH-----------HHHHHHHHHHHHHH-HHhCC
Confidence 346777776532 1 11 121222334588987664 443221 01122333444333 34589
Q ss_pred cEEEEeccCCC----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC-HHHH--
Q psy4398 171 PVSCKIRVFHN----EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE-IVDY-- 243 (306)
Q Consensus 171 pv~vKir~g~~----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~-- 243 (306)
|+.+=...|.+ .+-....++...+.|+|.|-+. |.+ +.++++.+...+||+..||=.. .+++
T Consensus 142 Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~-------y~~----~~f~~vv~a~~vPVviaGG~k~~~~~~L~ 210 (264)
T PRK08227 142 PVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY-------YVE----EGFERITAGCPVPIVIAGGKKLPERDALE 210 (264)
T ss_pred cEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC-------CCH----HHHHHHHHcCCCcEEEeCCCCCCHHHHHH
Confidence 98883322432 2235667788899999999753 322 5678888888999999999653 2222
Q ss_pred --HHHHHh---hhhhccccCCCC
Q psy4398 244 --GGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 244 --~~~l~~---~v~vGrall~~p 261 (306)
+++++. |+.+||-+++.+
T Consensus 211 ~v~~ai~aGa~Gv~~GRNIfQ~~ 233 (264)
T PRK08227 211 MCYQAIDEGASGVDMGRNIFQSE 233 (264)
T ss_pred HHHHHHHcCCceeeechhhhccC
Confidence 223332 569999998865
No 268
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.68 E-value=0.14 Score=48.04 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=105.0
Q ss_pred CceEEEec-CCCHHHHHHHHHHH-hcCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEe
Q psy4398 102 NKIILQIG-TADPERALEAAKKV-EHDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKI 176 (306)
Q Consensus 102 ~p~ivql~-g~~~~~~~~aa~~~-~~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKi 176 (306)
.|+..... ..+++++.+.++.+ ++||..+-+.++. |. + + ..+++.-.+.++++|+.++ +.+.+-.
T Consensus 109 i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~-----~--~---~~~~~~d~~~v~avr~~~g~~~~l~vDa 178 (341)
T cd03327 109 IPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPS-----D--G---HAGLRKNVELVRAIREAVGYDVDLMLDC 178 (341)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC-----c--c---hHHHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 44444432 35777776666544 4699999998653 11 0 0 0134556778888888874 4455555
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccc
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRN 256 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGra 256 (306)
..+|+.+++.++++.+++.++.++- ++. .+.+++..+++++.+++||.+.=.+.+..+++++++... ...
T Consensus 179 n~~~~~~~A~~~~~~l~~~~~~~iE-------eP~-~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a--~d~ 248 (341)
T cd03327 179 YMSWNLNYAIKMARALEKYELRWIE-------EPL-IPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRA--VDI 248 (341)
T ss_pred CCCCCHHHHHHHHHHhhhcCCcccc-------CCC-CccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCC--CCE
Confidence 5568999999999999998876652 222 245788899999999999887666788999999887532 001
Q ss_pred cCCCC-C----chHHHHHHHHHhcCCCCCc
Q psy4398 257 HYPVE-K----LPKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 257 ll~~p-~----~~~~~l~~~~~~~g~~~~~ 281 (306)
+--++ . ..-+.+.++.+++|++...
T Consensus 249 i~~d~~~~GGit~~~~i~~~A~~~g~~~~~ 278 (341)
T cd03327 249 LQPDVNWVGGITELKKIAALAEAYGVPVVP 278 (341)
T ss_pred EecCccccCCHHHHHHHHHHHHHcCCeecc
Confidence 11122 1 1223677778888887443
No 269
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=96.68 E-value=0.12 Score=49.78 Aligned_cols=165 Identities=13% Similarity=0.149 Sum_probs=102.5
Q ss_pred ecCCCHHHHHHHHHHH-hcCCCEEEEccCCCcc---ccccCC----cccc----------c--cCChHHHHHHHHHHHhc
Q psy4398 108 IGTADPERALEAAKKV-EHDVAAIDINMGCPKQ---FSLTGG----MGAA----------L--LSTPDIACNILTTLISN 167 (306)
Q Consensus 108 l~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~---~~~~~~----~G~~----------l--~~~~~~~~eiv~~v~~~ 167 (306)
..+.+++++.+-++.+ +.||..+-+.+|.|.. ...... ++.. + .+..+...+.++++|+.
T Consensus 123 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~ 202 (404)
T PRK15072 123 ANGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK 202 (404)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence 3455677765555444 5699999998875321 000000 0000 0 01124456889999998
Q ss_pred cc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 168 LS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 168 ~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
++ +.+.+-...+|+.+++.++++.+++.++..|- ++. .+.+++-.+++++.+++||.+.=.+.+..+++.
T Consensus 203 ~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------eP~-~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~ 274 (404)
T PRK15072 203 FGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLE-------DPT-PAENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQ 274 (404)
T ss_pred hCCCceEEEECCCCCCHHHHHHHHHhccccCCcEEE-------CCC-CccCHHHHHHHHhcCCCCEEeCcCccCHHHHHH
Confidence 84 44555555579999999999999998887774 222 245788889999999999988777888999999
Q ss_pred HHHhhh-hhcc--ccCCCCCchHHHHHHHHHhcCCCCC
Q psy4398 246 VFSLNC-AFLR--NHYPVEKLPKTILYAHCKYKRFEVP 280 (306)
Q Consensus 246 ~l~~~v-~vGr--all~~p~~~~~~l~~~~~~~g~~~~ 280 (306)
+++.+. .+=. ....+-...-+.+.++.+.+|++..
T Consensus 275 li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~ 312 (404)
T PRK15072 275 LIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTG 312 (404)
T ss_pred HHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCcee
Confidence 888632 1000 0000111122356677778887743
No 270
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.67 E-value=0.1 Score=45.93 Aligned_cols=139 Identities=10% Similarity=0.057 Sum_probs=84.7
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc-EEEEeccC
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP-VSCKIRVF 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g 179 (306)
.+++.=+.+.++++..+.++.+.+ |...||+-+..|+. .+.+.++.+.+++. .| +.+....-
T Consensus 15 ~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a--------------~~~i~~l~~~~~~~--~p~~~vGaGTV 78 (222)
T PRK07114 15 TGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFA--------------HEVFAELVKYAAKE--LPGMILGVGSI 78 (222)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcH--------------HHHHHHHHHHHHhh--CCCeEEeeEeC
Confidence 467777788999999999997765 99999998877662 12233333333332 22 22222211
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccC--------------------C--------CC------CCCCCCcHHHHHHHHh
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRT--------------------K--------AE------RPRHRNRIEMIRTLTQ 225 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~--------------------~--------~~------~~~~p~~~~~v~~i~~ 225 (306)
.+ .+-++.+.++|++++.--+.. . .+ .+.......+++.++.
T Consensus 79 l~----~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~ 154 (222)
T PRK07114 79 VD----AATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKG 154 (222)
T ss_pred cC----HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhc
Confidence 12 333455566677666521100 0 00 0011123578889988
Q ss_pred hC-CCcEEEecCCCC-HHHHHHHHHhhh---hhccccCCC
Q psy4398 226 HL-KIPVIANGGSKE-IVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 226 ~~-~ipvia~GGI~s-~~~~~~~l~~~v---~vGrall~~ 260 (306)
-+ ++|++.+|||+- .+++.+.++.++ .+|+.|+..
T Consensus 155 p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~ 194 (222)
T PRK07114 155 PMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPK 194 (222)
T ss_pred cCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCc
Confidence 88 799999999983 578888888765 678888743
No 271
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.65 E-value=0.013 Score=50.53 Aligned_cols=140 Identities=19% Similarity=0.249 Sum_probs=76.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccc---------cc--CCccccccCChHHHHH----------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFS---------LT--GGMGAALLSTPDIACN---------- 159 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~---------~~--~~~G~~l~~~~~~~~e---------- 159 (306)
.+++.=|.+.++++..+.++.+.+ |+..+|+.+..|+... .. -|.|+- -+.+.+.+
T Consensus 8 ~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV--~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 8 NKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTV--LTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp HSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES----SHHHHHHHHHHT-SEEE
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEec--cCHHHHHHHHHcCCCEEE
Confidence 367777888999999999997765 9999999887765200 00 011110 12222111
Q ss_pred -------HHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCc-HHHHHHHHhhC-CCc
Q psy4398 160 -------ILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNR-IEMIRTLTQHL-KIP 230 (306)
Q Consensus 160 -------iv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~-~~~v~~i~~~~-~ip 230 (306)
+++..++. ++|+.-.+- + .-|+ ..+.++|++.+-+..-.. .. ..+++.++.-+ +++
T Consensus 86 SP~~~~~v~~~~~~~-~i~~iPG~~---T---ptEi-~~A~~~G~~~vK~FPA~~-------~GG~~~ik~l~~p~p~~~ 150 (196)
T PF01081_consen 86 SPGFDPEVIEYAREY-GIPYIPGVM---T---PTEI-MQALEAGADIVKLFPAGA-------LGGPSYIKALRGPFPDLP 150 (196)
T ss_dssp ESS--HHHHHHHHHH-TSEEEEEES---S---HHHH-HHHHHTT-SEEEETTTTT-------TTHHHHHHHHHTTTTT-E
T ss_pred CCCCCHHHHHHHHHc-CCcccCCcC---C---HHHH-HHHHHCCCCEEEEecchh-------cCcHHHHHHHhccCCCCe
Confidence 11111110 111111111 1 1122 223457777777653221 12 58999999888 799
Q ss_pred EEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 231 VIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
++.+|||+ .+++.+.++.+. .+|+.|+.
T Consensus 151 ~~ptGGV~-~~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 151 FMPTGGVN-PDNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp EEEBSS---TTTHHHHHTSTTBSEEEESGGGS
T ss_pred EEEcCCCC-HHHHHHHHhCCCEEEEECchhcC
Confidence 99999987 578888888754 88888775
No 272
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=96.58 E-value=0.074 Score=48.71 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
-|.+.+.+..+.+ +. |+++|=++-+. |-...-..+.-.++++.+.+.+ .+||++-+.. .+.++++
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~Gst----------GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai 86 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNGST----------GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQ 86 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECcCC----------cCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHH
Confidence 4667777777755 57 99999996432 1111122333344455444443 4688887763 4678899
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEE------ecCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia------~GGI~s~~~~~~~l~ 248 (306)
++++.++++|+|++.+....... +....-.++.++|.+++ ++||+. .|---+++...++.+
T Consensus 87 ~~a~~a~~~Gad~v~~~~P~y~~-~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 87 ELAKHAEELGYDAISAITPFYYK-FSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCC-CCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 99999999999999976532111 11112356778888889 899874 343446666666654
No 273
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=96.58 E-value=0.053 Score=49.58 Aligned_cols=126 Identities=14% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+++|=++-+. |-...-..+.-.++++.+.+.+ ..||.+-+.. .+.+++++
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~Gst----------GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~~i~ 84 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVGTT----------GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEEAIS 84 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccC----------cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHHHHH
Confidence 3566777777765 4599999986332 1111122233344444444433 3688877763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia------~GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+....-. .+....-+++.++|.+++++||+. +|---+++..+++.+
T Consensus 85 ~a~~a~~~Gad~v~v~pP~y~-~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 85 LTKFAEDVGADGFLVVTPYYN-KPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHHHHHHcCCCEEEEcCCcCC-CCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 999999999999998754311 111111346677888888888773 343345666665554
No 274
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.57 E-value=0.078 Score=51.21 Aligned_cols=144 Identities=10% Similarity=0.022 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~ 186 (306)
+.+++++.+.++.. ++||..+-+.+| .+++.-.+.++++|+.++ +.+.+-...+|+.+++.
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~ 257 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAI 257 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 45677776666644 469999999654 134445677889998884 44555555568999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-C
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL---KIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-K 262 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~---~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~ 262 (306)
++++.+++.++.++- ++. .+.+++..+++++.+ ++||.+.=.+.+..+++++++.+. -..+--|+ .
T Consensus 258 ~~~~~L~~~~l~~iE-------EP~-~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a--~dil~~d~~~ 327 (415)
T cd03324 258 EWVKQLAEFKPWWIE-------EPT-SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGA--IDVVQIDSCR 327 (415)
T ss_pred HHHHHhhccCCCEEE-------CCC-CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCC--CCEEEeCccc
Confidence 999999999988763 222 245788889999988 699877667889999999887532 00001122 1
Q ss_pred ----chHHHHHHHHHhcCCCC
Q psy4398 263 ----LPKTILYAHCKYKRFEV 279 (306)
Q Consensus 263 ----~~~~~l~~~~~~~g~~~ 279 (306)
..-+.+.+..+.+|++.
T Consensus 328 ~GGit~~~kia~lA~a~gi~~ 348 (415)
T cd03324 328 LGGVNENLAVLLMAAKFGVPV 348 (415)
T ss_pred cCCHHHHHHHHHHHHHcCCeE
Confidence 12236667778888874
No 275
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=96.56 E-value=0.069 Score=48.98 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|.++|=++.+. |-...-..+.-.++++.+.+.+ ..||.+-+.. .+.+++++
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~----------GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~ 87 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTT----------GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIE 87 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcC----------CccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHH
Confidence 45677777777665 599999997442 1111222333344445444444 3688877763 36788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia------~GGI~s~~~~~~~l~ 248 (306)
+++.++++|+|++.+....-. ......-.++.++|.+++++||+. .|---+++.+.++.+
T Consensus 88 ~a~~a~~~G~d~v~~~pP~~~-~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~ 153 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYN-KPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAE 153 (292)
T ss_pred HHHHHHHcCCCEEEECCCcCC-CCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHc
Confidence 999999999999998653211 111112356778888888888773 344446666666643
No 276
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=96.49 E-value=0.063 Score=48.41 Aligned_cols=95 Identities=23% Similarity=0.322 Sum_probs=64.5
Q ss_pred CHHHHHHHHH-HHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE---------EEecc--
Q psy4398 112 DPERALEAAK-KVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS---------CKIRV-- 178 (306)
Q Consensus 112 ~~~~~~~aa~-~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~---------vKir~-- 178 (306)
++++..+.+. .++ .|+++|.|-- + ....+.++++.+ .++||. ++.-.
T Consensus 90 ~~e~a~~na~rl~~eaGa~aVkiEg-------------g------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy 149 (263)
T TIGR00222 90 TPEQALKNAARVMQETGANAVKLEG-------------G------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGY 149 (263)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcC-------------c------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCe
Confidence 4666555444 556 4999999941 1 223455555544 477877 33211
Q ss_pred ---CCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 ---FHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 ---g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
|.+. +++++-|+.++++||+.|.+-+. | -+.+++|.+.+++|+|+.|.
T Consensus 150 ~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~v--------p--~~~a~~It~~l~iP~iGIGa 203 (263)
T TIGR00222 150 KVQGKDEEAAKKLLEDALALEEAGAQLLVLECV--------P--VELAAKITEALAIPVIGIGA 203 (263)
T ss_pred eecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCC--------c--HHHHHHHHHhCCCCEEeecc
Confidence 2232 35788899999999999998654 2 37899999999999998875
No 277
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.48 E-value=0.045 Score=51.25 Aligned_cols=94 Identities=12% Similarity=0.210 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC--CCCCCCC--C--CcHHHHHHHHhhC
Q psy4398 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT--KAERPRH--R--NRIEMIRTLTQHL 227 (306)
Q Consensus 154 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~--~~~~~~~--p--~~~~~v~~i~~~~ 227 (306)
.+...+.++.+++..+.|+++.++. .+.++..++++.++++|+|+|.++-.- ......+ + ..++.++++++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence 4566677777777778999999974 466788999999999999999985321 1111111 1 1357789999999
Q ss_pred CCcEEEe--cCCCCHHHHHHHHH
Q psy4398 228 KIPVIAN--GGSKEIVDYGGVFS 248 (306)
Q Consensus 228 ~ipvia~--GGI~s~~~~~~~l~ 248 (306)
++||++- +++.++.+..+.++
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~ 187 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLD 187 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHH
Confidence 9999987 44444445444443
No 278
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.42 E-value=0.2 Score=46.08 Aligned_cols=139 Identities=12% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCCCceEEEec---CCCHHHHHHHHHHHh-cCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcc-cccE
Q psy4398 99 REKNKIILQIG---TADPERALEAAKKVE-HDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPV 172 (306)
Q Consensus 99 ~~~~p~ivql~---g~~~~~~~~aa~~~~-~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv 172 (306)
..+.|+++-+- |+.++ ..+..+.+. .|+.+|.|.=.. |. +.+..++.-.-..+...+-|++++++. +.++
T Consensus 75 ~~~lPv~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~pK---~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~ 150 (294)
T TIGR02319 75 AVDVPVIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVNPK---RCGHLEGKRLISTEEMTGKIEAAVEAREDEDF 150 (294)
T ss_pred ccCCCEEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCCcc---ccCCCCCccccCHHHHHHHHHHHHHhccCCCe
Confidence 34679999873 34444 566666665 599999995332 21 112222221223333344444444433 2334
Q ss_pred EEEecc----CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcE---EEecCCCCHHHHHH
Q psy4398 173 SCKIRV----FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPV---IANGGSKEIVDYGG 245 (306)
Q Consensus 173 ~vKir~----g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipv---ia~GGI~s~~~~~~ 245 (306)
.+=-|. ....++.++=++...++|+|.|-+++. .+.+.++++.+.++.|+ +..||-.-.-+.++
T Consensus 151 ~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~---------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~e 221 (294)
T TIGR02319 151 TIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAM---------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKE 221 (294)
T ss_pred EEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC---------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHH
Confidence 443332 235677888899999999999998752 35688999999998887 44444322223444
Q ss_pred HHHhh
Q psy4398 246 VFSLN 250 (306)
Q Consensus 246 ~l~~~ 250 (306)
+.+.|
T Consensus 222 L~~lG 226 (294)
T TIGR02319 222 LESIG 226 (294)
T ss_pred HHHcC
Confidence 44443
No 279
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=96.42 E-value=0.25 Score=43.12 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHH
Q psy4398 110 TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~ 188 (306)
..+++++.+ .++. +.|.|+||-. .++++ ++.+++..++|++--++.....+ ..
T Consensus 61 n~~~~~i~~---i~~~~~ld~VQlHG~----------------e~~~~----~~~l~~~~~~~v~kai~v~~~~~---~~ 114 (208)
T COG0135 61 NESIEEILE---IAEELGLDAVQLHGD----------------EDPEY----IDQLKEELGVPVIKAISVSEEGD---LE 114 (208)
T ss_pred CCCHHHHHH---HHHhcCCCEEEECCC----------------CCHHH----HHHHHhhcCCceEEEEEeCCccc---hh
Confidence 345555554 3444 6799999822 24444 45556655788887777533222 22
Q ss_pred HHHHHHcCCcEEEEcccCCC--CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCC
Q psy4398 189 CKRLEACGIIAIGVHGRTKA--ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVE 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~--~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p 261 (306)
....+..-+|.+.+...... ++...+.+|+.+... ....|++..||++ +++..++++. ++-+-+++=.+|
T Consensus 115 ~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 115 LAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred hhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCCC-HHHHHHHHHhcCCceEEeccccccCC
Confidence 33344566899988775432 233335688887766 4578999999987 8888888875 456666666666
No 280
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=96.40 E-value=0.33 Score=45.97 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=96.1
Q ss_pred CceEEEecCCCHHHH-HHHHHHHhcC-CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEec
Q psy4398 102 NKIILQIGTADPERA-LEAAKKVEHD-VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~~~~-~~aa~~~~~g-~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir 177 (306)
.|+...+...++++. .++.+.+++| |..+-+.+|. .+++.-.+.++++|+.++ +.+.+-..
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDaN 196 (365)
T cd03318 132 LPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDVN 196 (365)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 355545544454444 4444455568 9999997542 123333566788888774 33444444
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhcccc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNH 257 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGral 257 (306)
.+|+.+++.++++.+++.++.+|- ++. .+.+++..+++++..++||.+.=.+.+.+++.++++.+. ...+
T Consensus 197 ~~~~~~~A~~~~~~l~~~~~~~iE-------eP~-~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~--~d~~ 266 (365)
T cd03318 197 QAWDESTAIRALPRLEAAGVELIE-------QPV-PRENLDGLARLRSRNRVPIMADESVSGPADAFELARRGA--ADVF 266 (365)
T ss_pred CCCCHHHHHHHHHHHHhcCcceee-------CCC-CcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCC--CCeE
Confidence 468889999999999999876652 222 234778889999999999887666788889988887532 0001
Q ss_pred CCCC-C----chHHHHHHHHHhcCCCC
Q psy4398 258 YPVE-K----LPKTILYAHCKYKRFEV 279 (306)
Q Consensus 258 l~~p-~----~~~~~l~~~~~~~g~~~ 279 (306)
.-+| . ..-+.+.++.+++|++.
T Consensus 267 ~~d~~~~GGit~~~~~~~~a~~~gi~~ 293 (365)
T cd03318 267 SLKIAKSGGLRRAQKVAAIAEAAGIAL 293 (365)
T ss_pred EEeecccCCHHHHHHHHHHHHHcCCce
Confidence 1122 1 12235566677777763
No 281
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=96.39 E-value=0.0086 Score=50.95 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=46.3
Q ss_pred HHHHHHcCCcEEEEcccCC---CCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 189 CKRLEACGIIAIGVHGRTK---AERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~---~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
++.+.+.|+|++.+..... +... .|..++.+.++++..++||++-||| +.+++.++.+.|+
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~-~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~~Ga 171 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGA-PPLGLDGLREIARASPIPVYALGGI-TPENIPELREAGA 171 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS--TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-
T ss_pred HHHhhhcCCCEEEECCccCCCCCccc-cccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCC
Confidence 7777889999999876532 2222 5668999999999999999999999 5888888887654
No 282
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=96.39 E-value=0.067 Score=50.10 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=92.2
Q ss_pred CCCCceEEEecCCCH---HHHHHHHHH----H----hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 99 REKNKIILQIGTADP---ERALEAAKK----V----EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 99 ~~~~p~ivql~g~~~---~~~~~aa~~----~----~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
+...|+++.|-+... +...++.+. + +.||+-|.+..|. -.++++.+...++++....
T Consensus 90 ~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~-----------lpfEeNI~~TkevVe~Ah~- 157 (350)
T PRK09197 90 HYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE-----------EPLEENIEICSKYLERMAK- 157 (350)
T ss_pred HCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC-----------CCHHHHHHHHHHHHHHHHH-
Confidence 356899999976643 222222221 1 1258888886442 3466788888888877764
Q ss_pred ccccEEEEecc--C----C----C-----hHHHHHHHHHHHHcCC----cEEEEcccCCCCCCC-C--CCcHHHHHHHHh
Q psy4398 168 LSIPVSCKIRV--F----H----N-----EADTIALCKRLEACGI----IAIGVHGRTKAERPR-H--RNRIEMIRTLTQ 225 (306)
Q Consensus 168 ~~~pv~vKir~--g----~----~-----~~~~~~~a~~l~~~G~----d~i~v~~~~~~~~~~-~--p~~~~~v~~i~~ 225 (306)
.+++|-.-+.. | . . ..+..+..+-+++.|+ |.|-+.-.+..+.|. + ..+++.+++|++
T Consensus 158 ~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~ 237 (350)
T PRK09197 158 AGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQE 237 (350)
T ss_pred cCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHH
Confidence 46666665553 1 1 0 1223344444456677 999886666555564 2 258899999999
Q ss_pred hC---------CCcEEEecCCCCH-HHHHHHHHhhh
Q psy4398 226 HL---------KIPVIANGGSKEI-VDYGGVFSLNC 251 (306)
Q Consensus 226 ~~---------~ipvia~GGI~s~-~~~~~~l~~~v 251 (306)
.+ ++|++..||-..+ ++.+++++.|+
T Consensus 238 ~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~GI 273 (350)
T PRK09197 238 YVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYGV 273 (350)
T ss_pred HHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCCC
Confidence 99 7999999997765 67788888765
No 283
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.35 E-value=0.083 Score=49.01 Aligned_cols=165 Identities=14% Similarity=0.227 Sum_probs=96.2
Q ss_pred ceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecC-CCCCCceEE-Ee-
Q psy4398 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC-PREKNKIIL-QI- 108 (306)
Q Consensus 32 ~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~p~iv-ql- 108 (306)
||+| ...-|.....++.+.|++++.+.-....-. .+...+.. ++-...+ .+...+ .....++++ -+
T Consensus 36 kivm---lTAyD~~sA~i~d~aGvD~ILVGDSlgmv~-lG~~~T~~-Vtld~mi------~H~~aV~Rga~~a~vVaDmP 104 (332)
T PLN02424 36 PITM---VTAYDYPSAVHVDSAGIDVCLVGDSAAMVV-HGHDTTLP-ITLDEML------VHCRAVARGANRPLLVGDLP 104 (332)
T ss_pred cEEE---EecCCHHHHHHHHHcCCCEEEECCcHHHHh-cCCCCCCC-cCHHHHH------HHHHHHhccCCCCEEEeCCC
Confidence 5554 345677888888889998888763321110 01110000 0000000 001111 112345555 44
Q ss_pred ---cCCCHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-----
Q psy4398 109 ---GTADPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV----- 178 (306)
Q Consensus 109 ---~g~~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~----- 178 (306)
.+.++++..+.|.++ ++ |+++|.|--|. ....++|+++. ..++||.-=+.+
T Consensus 105 fgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~ 165 (332)
T PLN02424 105 FGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAI 165 (332)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceee
Confidence 234788877766655 64 99999995221 22345566665 458998843333
Q ss_pred ---------CCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 ---------FHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 ---------g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
|-+. ..+++-|+.++++||+.|.+-+. | -+++++|.+.+++|+|+.|-
T Consensus 166 ~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~V--------p--~~la~~It~~l~IPtIGIGA 225 (332)
T PLN02424 166 SVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECV--------P--APVAAAITSALQIPTIGIGA 225 (332)
T ss_pred hhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCC--------c--HHHHHHHHHhCCCCEEeecC
Confidence 1122 24778899999999999998764 2 14889999999999998864
No 284
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=96.35 E-value=0.062 Score=49.14 Aligned_cols=125 Identities=14% Similarity=0.201 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~ 188 (306)
|.+.+.+..+.+. .|.+++-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+.++++++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~Gst----------GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~st~~~i~~ 88 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGST----------GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA-NSTEEAIEL 88 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTT----------TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC----------cccccCCHHHHHHHHHHHHHHccCceEEEecCcc-hhHHHHHHH
Confidence 5577777777554 599999996442 1111112233344455544433 4788888773 467889999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
++.+++.|+|++.+...... .+....-.++.+.|.+++++||+.= |---|++...++.+
T Consensus 89 a~~a~~~Gad~v~v~~P~~~-~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 89 ARHAQDAGADAVLVIPPYYF-KPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp HHHHHHTT-SEEEEEESTSS-SCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred HHHHhhcCceEEEEeccccc-cchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc
Confidence 99999999999988653211 1111113567788888888987653 22334555555444
No 285
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=96.35 E-value=0.019 Score=49.30 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=51.5
Q ss_pred HHHHHcCCcEEEEcccCCCC---CCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 190 KRLEACGIIAIGVHGRTKAE---RPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~---~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
..+.+.|+|++.+....... ....+..++.++++++.. ++||++.|||+ .+++.++++. ++++|++++..
T Consensus 110 ~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~-~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGIT-LENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHhhCC
Confidence 34667899999876543221 122234688899988776 59999999994 8999998886 45999998853
No 286
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=96.32 E-value=0.075 Score=48.81 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHH-h-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKKV-E-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
-|.+.+.+..+.+ . .|+++|=++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+.++++
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~Gst----------GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~~ai 89 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGGST----------GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQ 89 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECCCc----------cccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHHHHH
Confidence 4567788777755 5 699999996432 1112222333344555554444 3688887753 4678899
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
++++.+++.|+|++.+....-.. +....-+++.++|.+++++||+.= |---+++.+.++.+
T Consensus 90 ~~a~~a~~~Gad~v~v~~P~y~~-~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 90 ELAKYATELGYDAISAVTPFYYP-FSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCC-CCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 99999999999999987532111 111123566778888888887654 32335665555543
No 287
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=96.29 E-value=0.14 Score=47.00 Aligned_cols=123 Identities=11% Similarity=0.116 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHh-cC-CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKKVE-HD-VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g-~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
-|.+.+.+..+.+. .| +++|=++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+.++++
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~Gst----------GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i 86 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVGGST----------GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAV 86 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEECCcc----------cccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHH
Confidence 45677777777654 58 9999986442 2222223344445555555444 3688877763 4678899
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCC---CcHHHHHHHHhhC-CCcEEE------ecCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHR---NRIEMIRTLTQHL-KIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p---~~~~~v~~i~~~~-~ipvia------~GGI~s~~~~~~~l~ 248 (306)
++++.+++.|+|++.+.... |..+ .-+++.+++.+++ ++||+. .|---+++...++.+
T Consensus 87 ~la~~a~~~Gad~v~v~~P~----y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 87 ELGKYATELGYDCLSAVTPF----YYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred HHHHHHHHhCCCEEEEeCCc----CCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence 99999999999999985432 2211 1345667776666 677662 343445565555543
No 288
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.28 E-value=0.14 Score=50.66 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhhh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+..+-++.|.++|+|.|.+.... ..+ ...|+.+++|++... .+| ..|+|.|.++++.+++.|+
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~---g~~-~~~~~~i~~ik~~~p~~~v-i~g~v~t~e~a~~a~~aGa 311 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQ---GDS-IYQLEMIKYIKKTYPELDV-IGGNVVTMYQAQNLIQAGV 311 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCC---CCc-HHHHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHHHcCc
Confidence 345788889999999999997531 111 135789999999884 554 4688999999999999865
No 289
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=96.28 E-value=0.13 Score=47.26 Aligned_cols=127 Identities=16% Similarity=0.090 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
-|.+.+.+..+.+. .|+++|=++-+.- ..+--+..++.+.+..+++++.. .+||.+-+.. .+.+++++++
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~GstG------E~~~Ls~~Er~~l~~~~~~~~~g--~~pvi~gv~~-~~t~~ai~~a 88 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGGTSG------EPGSLTLEERKQAIENAIDQIAG--RIPFAPGTGA-LNHDETLELT 88 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCc------ccccCCHHHHHHHHHHHHHHhCC--CCcEEEECCc-chHHHHHHHH
Confidence 35567777777554 5999999964431 11111222333333344443332 4788877763 4677899999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEe------cCCCCHHHHHHHH
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIAN------GGSKEIVDYGGVF 247 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~------GGI~s~~~~~~~l 247 (306)
+.+++.|+|++.+....-.. +....-.++.+.|.+++ ++||+.= |---+++...++.
T Consensus 89 ~~A~~~Gad~v~v~pP~y~~-~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 89 KFAEEAGADAAMVIVPYYNK-PNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLR 152 (294)
T ss_pred HHHHHcCCCEEEEcCccCCC-CCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 99999999999987542111 11112356677888888 7887632 3334566665554
No 290
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.26 E-value=0.046 Score=46.43 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEeccCC---ChHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRVFH---NEAD 184 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g~---~~~~ 184 (306)
+.+.+.+.++.+. .|+++|.++. ++++.+++.+ .+|+.+++.... ..++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g------------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~ 66 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP------------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEV 66 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH------------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHH
Confidence 7778888888775 4999999962 3444444433 378999988521 1578
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCC--CCCcHHHHHHHHhhC--CCcEEEec---CCCCHHHHHHH
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPR--HRNRIEMIRTLTQHL--KIPVIANG---GSKEIVDYGGV 246 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~p~~~~~v~~i~~~~--~ipvia~G---GI~s~~~~~~~ 246 (306)
..+.++.+.+.|+|++.++..... .+. .....+.++++++.+ ++|++.-- ...+.+...++
T Consensus 67 ~~~~a~~a~~~Gad~i~v~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~ 134 (201)
T cd00945 67 KVAEVEEAIDLGADEIDVVINIGS-LKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKA 134 (201)
T ss_pred HHHHHHHHHHcCCCEEEEeccHHH-HhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHH
Confidence 999999999999999998643210 000 011257778888884 88977532 22256655554
No 291
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.26 E-value=0.17 Score=46.09 Aligned_cols=125 Identities=12% Similarity=0.064 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHH
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~ 188 (306)
.-|.+.+.+..+.+. .|+|+|=++.+. |-...-..+.-.++++.+.+.++ ++.+-+.. .+.++++++
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~Gst----------GE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg~-~~~~~ai~~ 83 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTT----------GLGPSLSFQEKLELLKAYSDITD-KVIFQVGS-LNLEESIEL 83 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcccC----------CCcccCCHHHHHHHHHHHHHHcC-CEEEEeCc-CCHHHHHHH
Confidence 456778888888665 599999996442 22222233334555555555554 35555542 567899999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia------~GGI~s~~~~~~~l~ 248 (306)
++.++++|+|++.+....-........-.++.+++.+ ++||+. +|---+++...++.+
T Consensus 84 a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~ 147 (279)
T cd00953 84 ARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKK 147 (279)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHh
Confidence 9999999999999865321110000112355667776 778663 343456777666653
No 292
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=96.26 E-value=0.15 Score=45.67 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=88.6
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------------C------
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------------F------ 179 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------------g------ 179 (306)
.|+.-+. |+++|-+ +.-|. .+.| .++ .++.+++.+.+||.+|-=+ |
T Consensus 71 ia~~Ye~~GAa~iSV-LTd~~------~F~G----s~e----~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLL 135 (254)
T COG0134 71 IAKAYEEGGAAAISV-LTDPK------YFQG----SFE----DLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLL 135 (254)
T ss_pred HHHHHHHhCCeEEEE-ecCcc------ccCC----CHH----HHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHH
Confidence 4454444 7999888 22222 2333 334 4577788899999999432 2
Q ss_pred ----CChHHHHHHHHHHHHcCCcEEE-EcccCC-------C-------CCC--CCCCcHHHHHHHHhhC--CCcEEEecC
Q psy4398 180 ----HNEADTIALCKRLEACGIIAIG-VHGRTK-------A-------ERP--RHRNRIEMIRTLTQHL--KIPVIANGG 236 (306)
Q Consensus 180 ----~~~~~~~~~a~~l~~~G~d~i~-v~~~~~-------~-------~~~--~~p~~~~~v~~i~~~~--~ipvia~GG 236 (306)
.+.+...++.+...+.|.+.++ +|.... . .+- .-..+++...++.+.. +.-+|+-.|
T Consensus 136 I~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESG 215 (254)
T COG0134 136 IVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESG 215 (254)
T ss_pred HHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCC
Confidence 1334578888888899998887 665320 0 000 1124667778888877 478999999
Q ss_pred CCCHHHHHHHHHhhh---hhccccCCCCCc
Q psy4398 237 SKEIVDYGGVFSLNC---AFLRNHYPVEKL 263 (306)
Q Consensus 237 I~s~~~~~~~l~~~v---~vGrall~~p~~ 263 (306)
|.+++|++.+.+.|+ -||+++++.+..
T Consensus 216 I~~~~dv~~l~~~ga~a~LVG~slM~~~~~ 245 (254)
T COG0134 216 ISTPEDVRRLAKAGADAFLVGEALMRADDP 245 (254)
T ss_pred CCCHHHHHHHHHcCCCEEEecHHHhcCCCH
Confidence 999999999998854 999999997754
No 293
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=96.21 E-value=0.071 Score=47.62 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=80.7
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C---CChH---HHHHHHHHHHHc
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F---HNEA---DTIALCKRLEAC 195 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g---~~~~---~~~~~a~~l~~~ 195 (306)
+.|+|.|||+-.-. .|| + .|. ..+++.+++.+++||.|=+|+ | .+.+ ...+-++.+.+.
T Consensus 19 ~~GAdRiELc~~L~--------~GG-l--TPS--~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~ 85 (248)
T PRK11572 19 QAGADRIELCAAPK--------EGG-L--TPS--LGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVREL 85 (248)
T ss_pred HcCCCEEEEccCcC--------CCC-c--CCC--HHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 35999999953211 111 1 111 224555666678998888886 2 2233 356677888899
Q ss_pred CCcEEEEcccCCCCCC-------------------CC-----CCcHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHhh
Q psy4398 196 GIIAIGVHGRTKAERP-------------------RH-----RNRIEMIRTLTQHLKI-PVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 196 G~d~i~v~~~~~~~~~-------------------~~-----p~~~~~v~~i~~~~~i-pvia~GGI~s~~~~~~~l~~~ 250 (306)
|+|++++-.-+.++.. .. +...+.+.++.+. ++ -|..+||-.++.+..+.++.+
T Consensus 86 GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~l-G~~rILTSGg~~~a~~g~~~L~~l 164 (248)
T PRK11572 86 GFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADL-GVARILTSGQQQDAEQGLSLIMEL 164 (248)
T ss_pred CCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHc-CCCEEECCCCCCCHHHHHHHHHHH
Confidence 9999997443322110 00 1012233444433 55 578889988888887777776
Q ss_pred hhh--ccccCCCCCchHHHHHHHHHhcCCCCCcceehh
Q psy4398 251 CAF--LRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ 286 (306)
Q Consensus 251 v~v--Grall~~p~~~~~~l~~~~~~~g~~~~~~~~~~ 286 (306)
+.. ++-++.+--+....+.++ .+.| .++||.+.
T Consensus 165 v~~a~~~~Im~GgGV~~~Nv~~l-~~tG--~~~~H~s~ 199 (248)
T PRK11572 165 IAASDGPIIMAGAGVRLSNLHKF-LDAG--VREVHSSA 199 (248)
T ss_pred HHhcCCCEEEeCCCCCHHHHHHH-HHcC--CCEEeeCC
Confidence 532 223455442222334444 3455 56666543
No 294
>KOG1606|consensus
Probab=96.20 E-value=0.054 Score=46.80 Aligned_cols=131 Identities=24% Similarity=0.296 Sum_probs=82.3
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
|+++++ |+-.|..-=..|... + ..-|-.-+.||+.+ +.++.++.+||..|.|+|-. --|+.|+..|+|
T Consensus 34 A~iAE~aGACaVmalervPadi-R-~~GgV~RMsDP~mI----Kei~~aVsiPVMAk~RiGHF-----VEAQIlE~l~vD 102 (296)
T KOG1606|consen 34 ARIAEEAGACAVMALERVPADI-R-AQGGVARMSDPRMI----KEIKNAVSIPVMAKVRIGHF-----VEAQILEALGVD 102 (296)
T ss_pred HHHHHhcCcceEeeeccCCHhH-H-hcCCeeecCCHHHH----HHHHHhccchhhhhhhhhhh-----hHHHHHHHhccC
Confidence 455654 766665544456432 2 22345667888865 45566778999999997642 336788888999
Q ss_pred EEE----Ecc--------------------c-----------------CCCCCCCC------------------------
Q psy4398 199 AIG----VHG--------------------R-----------------TKAERPRH------------------------ 213 (306)
Q Consensus 199 ~i~----v~~--------------------~-----------------~~~~~~~~------------------------ 213 (306)
+|. ++. | ++.+...+
T Consensus 103 YiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~ 182 (296)
T KOG1606|consen 103 YIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDD 182 (296)
T ss_pred ccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCH
Confidence 885 110 0 00000000
Q ss_pred ----------CCcHHHHHHHHhhCCCcE--EEecCCCCHHHHHHHHHh---hhhhccccCCCC
Q psy4398 214 ----------RNRIEMIRTLTQHLKIPV--IANGGSKEIVDYGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 214 ----------p~~~~~v~~i~~~~~ipv--ia~GGI~s~~~~~~~l~~---~v~vGrall~~p 261 (306)
..-++++.+.++.-++|| ++.|||.++.|+.-+... |+-+|+.++..+
T Consensus 183 dev~t~Ak~i~aP~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~ 245 (296)
T KOG1606|consen 183 DEVFTFAKEIAAPYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSG 245 (296)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCC
Confidence 012456666666667786 589999999999877764 668888888754
No 295
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=96.18 E-value=0.53 Score=41.12 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
..++++..+.++ +.+.|.|+||-.. .++ .++.+++..+++++-.++... ..+....
T Consensus 63 ~~~~~~i~~~~~--~~~~d~vQLHg~e----------------~~~----~~~~l~~~~~~~iik~i~v~~-~~~l~~~- 118 (210)
T PRK01222 63 NASDEEIDEIVE--TVPLDLLQLHGDE----------------TPE----FCRQLKRRYGLPVIKALRVRS-AGDLEAA- 118 (210)
T ss_pred CCCHHHHHHHHH--hcCCCEEEECCCC----------------CHH----HHHHHHhhcCCcEEEEEecCC-HHHHHHH-
Confidence 445655554433 2378999998322 222 345666666777776666422 1222221
Q ss_pred HHHHHcCCcEEEEcccCCC-CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccC
Q psy4398 190 KRLEACGIIAIGVHGRTKA-ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHY 258 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~-~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall 258 (306)
... ...+|++.+...... +......+|+.+. +.++.|++..|||+ +++..++++. |+-+-+.+=
T Consensus 119 ~~~-~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~---~~~~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE 187 (210)
T PRK01222 119 AAY-YGDADGLLLDAYVGLPGGTGKTFDWSLLP---AGLAKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVE 187 (210)
T ss_pred Hhh-hccCCEEEEcCCCCCCCCCCCccchHHhh---hccCCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceE
Confidence 111 236899988764421 1112234677661 22367999999986 8888888864 555555553
No 296
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.17 E-value=0.3 Score=44.07 Aligned_cols=151 Identities=11% Similarity=0.066 Sum_probs=95.6
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
..|+...+...+++...++.+..+.||..+-+.+|- .+++.-.+.++++++.++ ..+.+--..
T Consensus 72 ~v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 136 (263)
T cd03320 72 RIPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVGA---------------TSFEEDLARLRALREALPADAKLRLDANG 136 (263)
T ss_pred CcceeEEecCCCHHHHHHHHHHHhCCCCEEEEEECC---------------CChHHHHHHHHHHHHHcCCCCeEEEeCCC
Confidence 345666666666644444444445699999997541 123444567788888774 334444444
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
+|+.+++.++++.+++.++.++- ++.. +.+++-.++++ +++||.+.=.+.+..++.++++.+.. ..+-
T Consensus 137 ~w~~~~A~~~~~~l~~~~i~~iE-------qP~~-~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~--d~v~ 204 (263)
T cd03320 137 GWSLEEALAFLEALAAGRIEYIE-------QPLP-PDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGAL--GALV 204 (263)
T ss_pred CCCHHHHHHHHHhhcccCCceEE-------CCCC-hHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCC--CEEE
Confidence 68999999999999998887763 2222 34666667776 68999887778888888888875320 0011
Q ss_pred CCC-C----chHHHHHHHHHhcCCC
Q psy4398 259 PVE-K----LPKTILYAHCKYKRFE 278 (306)
Q Consensus 259 ~~p-~----~~~~~l~~~~~~~g~~ 278 (306)
-+| . ..-..+.++.+++|++
T Consensus 205 ~k~~~~GGit~~~~i~~~a~~~gi~ 229 (263)
T cd03320 205 LKPALLGGPRALLELAEEARARGIP 229 (263)
T ss_pred ECchhcCCHHHHHHHHHHHHHcCCC
Confidence 122 1 1123667778888877
No 297
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.13 E-value=0.013 Score=51.00 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=84.2
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEcc----CCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINM----GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~----gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
+..+|...+...+.+..+.+++ |+|.+-+.+ -+|+ .-+--++++++++.+..|+.|=+=.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn---------------~~~g~~~i~~i~~~~~~~~DvHLMv 66 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN---------------LTFGPDIIKAIRKITDLPLDVHLMV 66 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS---------------B-B-HHHHHHHHTTSSSEEEEEEES
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCc---------------ccCCHHHHHHHhhcCCCcEEEEeee
Confidence 5677888888888888888875 888755532 2444 2223456788888888898887743
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccC--------------------------C-------------------CCCCCC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRT--------------------------K-------------------AERPRH 213 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~--------------------------~-------------------~~~~~~ 213 (306)
.+ ..++.+.+.++|++.|++|-.. . ..++.+
T Consensus 67 -~~---P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 67 -EN---PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp -SS---GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSS
T ss_pred -cc---HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCc
Confidence 22 3356666777788888776421 0 111222
Q ss_pred ----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 214 ----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 214 ----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
|..++-++++++.. ++.|..=|||+ .+++..+.++|+ .+|++++.
T Consensus 143 q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 143 QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVEAGADIFVAGSAIFK 199 (201)
T ss_dssp B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHHHT--EEEESHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhC
Confidence 12345555555443 47888899987 567888887766 88998875
No 298
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=96.12 E-value=0.12 Score=46.43 Aligned_cols=160 Identities=21% Similarity=0.288 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcc-cccccccCCCCCceeeecCCCCCCceEEEe----cCCCHH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL-LNTIDFVDPLDGSVVFRTCPREKNKIILQI----GTADPE 114 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~p~ivql----~g~~~~ 114 (306)
..-|.++..++.++|++++...-.-..-. .+...+... +..+-+. -+...+-. ....+++-+ .+.+++
T Consensus 22 TaYD~~~A~~~d~agvD~iLVGDSlgmv~-~G~~sT~~vtld~mi~h----~~aV~Rga--~~~~vv~DmPf~sy~~s~e 94 (261)
T PF02548_consen 22 TAYDYPSARIADEAGVDIILVGDSLGMVV-LGYDSTLPVTLDEMIYH----TKAVRRGA--PNAFVVADMPFGSYQASPE 94 (261)
T ss_dssp E--SHHHHHHHHHTT-SEEEE-TTHHHHT-T--SSSTT--HHHHHHH----HHHHHHH---TSSEEEEE--TTSSTSSHH
T ss_pred ecccHHHHHHHHHcCCCEEEeCCcHHHhe-eCCCCCcCcCHHHHHHH----HHHHHhcC--CCceEEecCCcccccCCHH
Confidence 35677888888899999887763211100 000000000 0000000 00000111 123345554 124677
Q ss_pred HHHHHHH-HHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--------------
Q psy4398 115 RALEAAK-KVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-------------- 178 (306)
Q Consensus 115 ~~~~aa~-~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-------------- 178 (306)
+..+.|. .+++ |+|+|-|--+ . ...++++++.+. ++||.-=+.+
T Consensus 95 ~av~nA~rl~ke~GadaVKlEGg-------------~------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~GGyr~q 154 (261)
T PF02548_consen 95 QAVRNAGRLMKEAGADAVKLEGG-------------A------EIAETIKALVDA-GIPVMGHIGLTPQSVHQLGGYRVQ 154 (261)
T ss_dssp HHHHHHHHHHHTTT-SEEEEEBS-------------G------GGHHHHHHHHHT-T--EEEEEES-GGGHHHHTSS--C
T ss_pred HHHHHHHHHHHhcCCCEEEeccc-------------h------hHHHHHHHHHHC-CCcEEEEecCchhheeccCCceEE
Confidence 6666555 4564 9999999522 1 224566666553 8999877654
Q ss_pred CCChH---HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 FHNEA---DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
|-+.+ ...+-|+.++++|+-.|.+.... -++.++|.+.+++|+|+-|.
T Consensus 155 Gk~~~~a~~l~~~A~ale~AGaf~ivlE~vp----------~~la~~It~~l~IPtIGIGa 205 (261)
T PF02548_consen 155 GKTAEEAEKLLEDAKALEEAGAFAIVLECVP----------AELAKAITEALSIPTIGIGA 205 (261)
T ss_dssp STSHHHHHHHHHHHHHHHHHT-SEEEEESBB----------HHHHHHHHHHSSS-EEEESS
T ss_pred ecCHHHHHHHHHHHHHHHHcCccEEeeecCH----------HHHHHHHHHhCCCCEEecCC
Confidence 12222 37888999999999999987642 26889999999999999886
No 299
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.12 E-value=0.11 Score=45.81 Aligned_cols=124 Identities=11% Similarity=0.050 Sum_probs=74.8
Q ss_pred HHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 120 AKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 120 a~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
++.++ .|+|+|-+..+= ++. ..+.+.+.++..++ .++.+.+=+. +. +-++.+.+.|.|
T Consensus 78 ~~~l~~~G~~~vii~~se-----r~~--------~~~e~~~~v~~a~~-~Gl~~I~~v~---~~----~~~~~~~~~~~~ 136 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSE-----RRL--------TLADIEAVVERAKK-LGLESVVCVN---NP----ETSAAAAALGPD 136 (223)
T ss_pred HHHHHHcCCCEEEEeccc-----ccc--------CHHHHHHHHHHHHH-CCCeEEEEcC---CH----HHHHHHhcCCCC
Confidence 45555 499999885331 011 12235667777665 3655444222 32 233445678888
Q ss_pred EEEEcccCCCCC--C---CCCCc-HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCCch
Q psy4398 199 AIGVHGRTKAER--P---RHRNR-IEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEKLP 264 (306)
Q Consensus 199 ~i~v~~~~~~~~--~---~~p~~-~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~~~ 264 (306)
.|-+-++...+. . ..|.. .+.++.+++.. ++||++.|||++.++++.+++. ++.+|++++.-+.+.
T Consensus 137 ~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~ 212 (223)
T PRK04302 137 YVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPE 212 (223)
T ss_pred EEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHH
Confidence 887654311111 0 11222 24456677655 7999999999999999999865 569999999654443
No 300
>PRK08999 hypothetical protein; Provisional
Probab=96.11 E-value=0.028 Score=51.97 Aligned_cols=62 Identities=16% Similarity=0.047 Sum_probs=47.2
Q ss_pred HHHHHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 189 CKRLEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
++.+.+.|+|++.+....... ....+..++.++++++.+++||+|-||| +.+++.++++.|+
T Consensus 239 ~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g~ 302 (312)
T PRK08999 239 LARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAREHGA 302 (312)
T ss_pred HHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHhCC
Confidence 456667899999987643211 1123457888999999999999999999 7999999888754
No 301
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.11 E-value=0.39 Score=46.95 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
+..+-++.+.++|+|.|.+..... .. ...++.++++++.+ ++||++ |+|.|.++++++++.|+
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g---~~-~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGa 287 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG---HS-IYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGA 287 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC---cH-hHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCC
Confidence 456777788899999999865432 11 23568899999986 899988 88999999999999876
No 302
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.10 E-value=0.11 Score=48.29 Aligned_cols=141 Identities=9% Similarity=0.050 Sum_probs=93.6
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHHhcC-----------CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 99 REKNKIILQIGTADPERALEAAKKVEHD-----------VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~~~aa~~~~~g-----------~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
+.+.|+++.|-+...+++..+-+.+..| |+-|.+..|. -.++++.+...++++....
T Consensus 83 ~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~-----------l~~eeNi~~T~~vve~Ah~- 150 (340)
T cd00453 83 HYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSE-----------ESLQENIEICSKYLERMSK- 150 (340)
T ss_pred HCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCC-----------CCHHHHHHHHHHHHHHHHH-
Confidence 4578999999877644454455555678 8888886443 2355677788888877754
Q ss_pred ccccEEEEecc--CC------C-------hHHHHHHHHHHHHcC----CcEEEEcccCCCCCCC---CCCcHHHHHHHHh
Q psy4398 168 LSIPVSCKIRV--FH------N-------EADTIALCKRLEACG----IIAIGVHGRTKAERPR---HRNRIEMIRTLTQ 225 (306)
Q Consensus 168 ~~~pv~vKir~--g~------~-------~~~~~~~a~~l~~~G----~d~i~v~~~~~~~~~~---~p~~~~~v~~i~~ 225 (306)
.+++|-.-+.. |. . ..+..+..+.+++.| +|.|-+.=.+..+.|. ...+++.+++|++
T Consensus 151 ~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~ 230 (340)
T cd00453 151 IGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQE 230 (340)
T ss_pred cCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHH
Confidence 36666665553 10 0 112445555556788 9999865444444443 2358899999999
Q ss_pred hC---------CCcEEEecCCCCH-HHHHHHHHhhh
Q psy4398 226 HL---------KIPVIANGGSKEI-VDYGGVFSLNC 251 (306)
Q Consensus 226 ~~---------~ipvia~GGI~s~-~~~~~~l~~~v 251 (306)
.+ ++|++..||-..+ ++++++++.|+
T Consensus 231 ~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~~Gi 266 (340)
T cd00453 231 YVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGV 266 (340)
T ss_pred HHHhhcccCCCCCceEEeCCCCCCHHHHHHHHHcCC
Confidence 88 7999999997765 55677777765
No 303
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.08 E-value=0.8 Score=42.93 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=72.4
Q ss_pred HHhcCCCEEEEc--cCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-CC------C----hHHHHHH
Q psy4398 122 KVEHDVAAIDIN--MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FH------N----EADTIAL 188 (306)
Q Consensus 122 ~~~~g~d~veln--~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g~------~----~~~~~~~ 188 (306)
.++.|+|+|-++ +|++.. .+..+.+.+++++.. ..++|+.+=+-. |. + ++-+...
T Consensus 155 AlrLGAdAV~~tvy~Gs~~E-----------~~ml~~l~~i~~ea~-~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~A 222 (348)
T PRK09250 155 ALRLGAVAVGATIYFGSEES-----------RRQIEEISEAFEEAH-ELGLATVLWSYLRNSAFKKDGDYHTAADLTGQA 222 (348)
T ss_pred HHHCCCCEEEEEEecCCHHH-----------HHHHHHHHHHHHHHH-HhCCCEEEEecccCcccCCcccccccHHHHHHH
Confidence 344599987664 443221 011233344444432 358897763222 21 1 2346677
Q ss_pred HHHHHHcCCcEEEEcccCC-------------CCCCC---CCCcHHHHHHHHhhC---CCcEEEecCCC-CHHHH----H
Q psy4398 189 CKRLEACGIIAIGVHGRTK-------------AERPR---HRNRIEMIRTLTQHL---KIPVIANGGSK-EIVDY----G 244 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~-------------~~~~~---~p~~~~~v~~i~~~~---~ipvia~GGI~-s~~~~----~ 244 (306)
++...+.|+|.|-+.-.+. ..-|. -...-+.++.+.+.+ ++||+..||=. +.+++ +
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 7888899999998742211 00011 111235566666666 79999999955 33332 3
Q ss_pred HH---HHh---hhhhccccCCCCCch
Q psy4398 245 GV---FSL---NCAFLRNHYPVEKLP 264 (306)
Q Consensus 245 ~~---l~~---~v~vGrall~~p~~~ 264 (306)
++ ++. |+.+||-+++.|.-.
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIfQ~~~~e 328 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAFQRPMAE 328 (348)
T ss_pred HHHHhhhcCCcchhhchhhhcCCcHH
Confidence 33 333 569999999887333
No 304
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.05 E-value=0.095 Score=44.77 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=70.2
Q ss_pred HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE--EEeccC---CChHHHHHHHH
Q psy4398 117 LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS--CKIRVF---HNEADTIALCK 190 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~--vKir~g---~~~~~~~~~a~ 190 (306)
...|+.++. |+.+|-.| . .+=++++|+.++.||+ +|-... ....-+.+-++
T Consensus 2 ~~mA~Aa~~gGA~giR~~-------------------~----~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~ 58 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRAN-------------------G----VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVD 58 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-------------------S----HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHH
T ss_pred HHHHHHHHHCCceEEEcC-------------------C----HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHH
Confidence 345565555 89999987 0 1236788999999987 443211 11223567778
Q ss_pred HHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccC
Q psy4398 191 RLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHY 258 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall 258 (306)
.+.++|+|.|-+.+..+..+ ..-.++++++++.. .+ ....|.|.+++..+.+.|+ .+|+-|.
T Consensus 59 ~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~-~l--~MADist~ee~~~A~~~G~D~I~TTLs 121 (192)
T PF04131_consen 59 ALAEAGADIIALDATDRPRP---ETLEELIREIKEKY-QL--VMADISTLEEAINAAELGFDIIGTTLS 121 (192)
T ss_dssp HHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT-SE--EEEE-SSHHHHHHHHHTT-SEEE-TTT
T ss_pred HHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC-cE--EeeecCCHHHHHHHHHcCCCEEEcccc
Confidence 88889999999887554333 22457889999988 44 4568889999999999988 8888863
No 305
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.01 E-value=0.057 Score=47.26 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=52.5
Q ss_pred HHHHHHcCCcEEEEcccCC---CCCCCCCCcHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCC
Q psy4398 189 CKRLEACGIIAIGVHGRTK---AERPRHRNRIEMIRTLTQH-LKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~---~~~~~~p~~~~~v~~i~~~-~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p 261 (306)
+..+++.|+|++.+..... +..+..+..++.+.++.+. .++||++-|||+ .+++.++++. |+++-++++..+
T Consensus 115 ~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisai~~~~ 193 (211)
T PRK03512 115 IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVLATGVGSIAVVSAITQAA 193 (211)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHHHcCCCEEEEhhHhhCCC
Confidence 4556678999999876432 2223345677878888777 489999999987 8888888886 457888877544
No 306
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.98 E-value=0.27 Score=43.53 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=90.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
.+..+|...+...+.+-.+.++.|+|.+-+.+-- +.+..+.-+--++++++|+.++.|+.|=+=.
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~~g~d~lH~DiMD-----------G~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv---- 68 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLNSKADYFHIDIMD-----------GHFVPNLTLSPFFVSQVKKLASKPLDVHLMV---- 68 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHhCCCEEEEeccc-----------CccCCCcccCHHHHHHHHhcCCCCeEEEEEe----
Confidence 4677888888888888888777688876664321 1122222233457788888777887776652
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC----------------------------------------------CCCCCC---
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK----------------------------------------------AERPRH--- 213 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~----------------------------------------------~~~~~~--- 213 (306)
++..++++.+.++|+|.|++|.-.. ..++.+
T Consensus 69 ~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~f 148 (229)
T PRK09722 69 TDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPF 148 (229)
T ss_pred cCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhc
Confidence 2355677788888888888875310 111111
Q ss_pred -CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccc-cCC
Q psy4398 214 -RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRN-HYP 259 (306)
Q Consensus 214 -p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGra-ll~ 259 (306)
|..++-++++++.. ++.|-.=|||+ .+++..+.++|+ .+|+. ++.
T Consensus 149 i~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 149 IPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcC
Confidence 11344555555432 35577789998 788999998876 77964 876
No 307
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.96 E-value=0.13 Score=44.66 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=70.5
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++..=+|. .+.++..++++.+.+.|+..+-++-++ |..++.++++++.++--+++.|.|.|.+++++++++|
T Consensus 9 ~liaVlr~-~~~e~a~~~~~al~~~Gi~~iEit~~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG 80 (204)
T TIGR01182 9 KIVPVIRI-DDVDDALPLAKALIEGGLRVLEVTLRT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG 80 (204)
T ss_pred CEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC
Confidence 45544553 467889999999999999999998654 4577889999988855689999999999999999965
Q ss_pred hhhccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 251 CAFLRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 251 v~vGrall~~p~~~~~~l~~~~~~~g~~ 278 (306)
+ .++--|.+ ..++-++++++|+.
T Consensus 81 A----~FivsP~~-~~~v~~~~~~~~i~ 103 (204)
T TIGR01182 81 A----QFIVSPGL-TPELAKHAQDHGIP 103 (204)
T ss_pred C----CEEECCCC-CHHHHHHHHHcCCc
Confidence 5 22333422 12555667777665
No 308
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.90 E-value=0.053 Score=47.02 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=50.0
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C---CChH---HHHHHHHHHHHc
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F---HNEA---DTIALCKRLEAC 195 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g---~~~~---~~~~~a~~l~~~ 195 (306)
+.|+|.|||+-+- ..|+. .|. ..+++.+++..++|+.|=+|+ | .+.+ ...+-++.+.+.
T Consensus 18 ~~GAdRiELc~~l--------~~GGl---TPS--~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~ 84 (201)
T PF03932_consen 18 AGGADRIELCSNL--------EVGGL---TPS--LGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLREL 84 (201)
T ss_dssp HTT-SEEEEEBTG--------GGT-B--------HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHT
T ss_pred HcCCCEEEECCCc--------cCCCc---CcC--HHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 4599999995321 11221 222 245666666788998888886 2 2223 366777888899
Q ss_pred CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecC
Q psy4398 196 GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGG 236 (306)
Q Consensus 196 G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GG 236 (306)
|+|++++-.-+.++. .+.+.++++.+.. +.|+...=-
T Consensus 85 GadG~VfG~L~~dg~----iD~~~~~~Li~~a~~~~~tFHRA 122 (201)
T PF03932_consen 85 GADGFVFGALTEDGE----IDEEALEELIEAAGGMPVTFHRA 122 (201)
T ss_dssp T-SEEEE--BETTSS----B-HHHHHHHHHHHTTSEEEE-GG
T ss_pred CCCeeEEEeECCCCC----cCHHHHHHHHHhcCCCeEEEeCc
Confidence 999999865444332 3444554444443 455555443
No 309
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.90 E-value=0.34 Score=42.87 Aligned_cols=139 Identities=9% Similarity=0.060 Sum_probs=87.6
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
.++..+|...+...+.+-.+++++ |+|.+-+.+- +|| .-+--.+++.+++ +.|+.|=+
T Consensus 13 ~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN---------------itfGp~~i~~i~~--~~~~DvHL 75 (228)
T PRK08091 13 QPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPF---------------FTVGAIAIKQFPT--HCFKDVHL 75 (228)
T ss_pred CeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc---------------cccCHHHHHHhCC--CCCEEEEe
Confidence 478889999999999888888875 8888666432 344 2222334556653 45666554
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccC----------------------------C-------------------CC
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRT----------------------------K-------------------AE 209 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~----------------------------~-------------------~~ 209 (306)
=. ++..++++.+.++|+|.|++|.-. + ..
T Consensus 76 Mv----~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~P 151 (228)
T PRK08091 76 MV----RDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDP 151 (228)
T ss_pred cc----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECC
Confidence 42 234556677777777777776321 0 11
Q ss_pred CCCC----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 210 RPRH----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 210 ~~~~----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
++.+ +..++-++++++.. ++.|-.=|||+ .+++..+.++|+ .+|++++.++.
T Consensus 152 GfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 152 RTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALFSQGE 215 (228)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhhCCCC
Confidence 1111 12344555555432 35577779987 788999888876 88999987554
No 310
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=95.90 E-value=0.12 Score=46.43 Aligned_cols=114 Identities=16% Similarity=0.117 Sum_probs=79.7
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.|+|+|=|.... -..+.+.++++...+ ++.-..|-+. +.+ + ++.+.++|++.|-|..
T Consensus 130 ~GADaVLLI~~~---------------L~~~~l~~l~~~a~~-lGle~lVEVh---~~~---E-l~~al~~~a~iiGINn 186 (254)
T PF00218_consen 130 AGADAVLLIAAI---------------LSDDQLEELLELAHS-LGLEALVEVH---NEE---E-LERALEAGADIIGINN 186 (254)
T ss_dssp TT-SEEEEEGGG---------------SGHHHHHHHHHHHHH-TT-EEEEEES---SHH---H-HHHHHHTT-SEEEEES
T ss_pred cCCCEeehhHHh---------------CCHHHHHHHHHHHHH-cCCCeEEEEC---CHH---H-HHHHHHcCCCEEEEeC
Confidence 499999996443 124556777766654 6888888888 322 2 3444578999999998
Q ss_pred cCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCCch
Q psy4398 205 RTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEKLP 264 (306)
Q Consensus 205 ~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~~~ 264 (306)
|.....- .+++...++...+ ++.+|+-+||.+++|+..+.+.|+ .+|+++++.|...
T Consensus 187 RdL~tf~---vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~ 248 (254)
T PF00218_consen 187 RDLKTFE---VDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDPG 248 (254)
T ss_dssp BCTTTCC---BHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHH
T ss_pred ccccCcc---cChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHH
Confidence 8755432 3567777787777 588999999999999999998754 9999999876443
No 311
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=95.89 E-value=0.2 Score=44.65 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=104.9
Q ss_pred CCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec
Q psy4398 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG 109 (306)
Q Consensus 30 ~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~ 109 (306)
++..+++|.+ -|..=..++.+.|+..++|-........ +.+ ..++++-.+... ...+.+...+.|+++-+-
T Consensus 7 ~~~~l~~p~~--~D~~SAr~~e~~Gf~ai~~sg~~~a~s~-G~p-D~~~lt~~e~~~-----~~~~I~~~~~iPv~vD~d 77 (238)
T PF13714_consen 7 PGKPLVLPNV--WDALSARLAERAGFDAIATSGAGVAASL-GYP-DGGLLTLTEMLA-----AVRRIARAVSIPVIVDAD 77 (238)
T ss_dssp SSSSEEEEEE--SSHHHHHHHHHTT-SEEEEHHHHHHHHT-TS--SSS-S-HHHHHH-----HHHHHHHHSSSEEEEE-T
T ss_pred CCCcEEeCCC--cCHHHHHHHHHcCCCEEEechHHHHHHc-CCC-CCCCCCHHHHHH-----HHHHHHhhhcCcEEEEcc
Confidence 4456666665 3444444566789877777543221111 111 001111100000 011111223579999883
Q ss_pred ---CCCHHHHHHHHHHHh-cCCCEEEEccC-CCccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEeccC--
Q psy4398 110 ---TADPERALEAAKKVE-HDVAAIDINMG-CPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRVF-- 179 (306)
Q Consensus 110 ---g~~~~~~~~aa~~~~-~g~d~veln~g-cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g-- 179 (306)
|+++....+..+.+. .|+.+|.|.=. |.+ -+..+. .++...+=|++++++. ++-|..+.-.-
T Consensus 78 ~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~-------~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~ 149 (238)
T PF13714_consen 78 TGYGNDPENVARTVRELERAGAAGINIEDQRCGH-------GGKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLR 149 (238)
T ss_dssp TTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTT-------STT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCH
T ss_pred cccCchhHHHHHHHHHHHHcCCcEEEeeccccCC-------CCCcee-CHHHHHHHHHHHHHhccCCeEEEEEecccccc
Confidence 455999999998776 49999999644 321 122333 4444444445554433 34455554431
Q ss_pred --CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 180 --HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 180 --~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
...+++++=++...++|+|.|-+++. .+.+.++++.++++.|+..+-+ ...-+.+++.+.|+
T Consensus 150 ~~~~~deaI~R~~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~~~Pl~v~~~-~~~~~~~eL~~lGv 213 (238)
T PF13714_consen 150 AEEGLDEAIERAKAYAEAGADMIFIPGL---------QSEEEIERIVKAVDGPLNVNPG-PGTLSAEELAELGV 213 (238)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEETTS---------SSHHHHHHHHHHHSSEEEEETT-SSSS-HHHHHHTTE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhcCCCEEEEcC-CCCCCHHHHHHCCC
Confidence 23466788888899999999998764 2456789999999999887764 22245556555543
No 312
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.84 E-value=0.15 Score=44.25 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=60.0
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++..=+| +.+.++..++++.+.+.|+..|-++-++ |..++.++++++.++--+|+.|.|.|.++++++++.|
T Consensus 5 ~vv~Vir-~~~~~~a~~ia~al~~gGi~~iEit~~t-------p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG 76 (201)
T PRK06015 5 PVIPVLL-IDDVEHAVPLARALAAGGLPAIEITLRT-------PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG 76 (201)
T ss_pred CEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC
Confidence 4444455 2577889999999999999999998654 5577899999988865689999999999999999965
Q ss_pred h
Q psy4398 251 C 251 (306)
Q Consensus 251 v 251 (306)
+
T Consensus 77 A 77 (201)
T PRK06015 77 S 77 (201)
T ss_pred C
Confidence 4
No 313
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.83 E-value=0.21 Score=46.07 Aligned_cols=80 Identities=21% Similarity=0.104 Sum_probs=62.6
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
..|+.+.+-...+.+...+.++.+++.|++.|.++......... ..++.++++++.+++||+.- ++.+.++++.+.+
T Consensus 115 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~--~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~~ 191 (299)
T cd02809 115 PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR--LTWDDLAWLRSQWKGPLILK-GILTPEDALRAVD 191 (299)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--CCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHHHH
Confidence 36888888754467778888999999999999987544322211 46899999999999999876 4788999999988
Q ss_pred hhh
Q psy4398 249 LNC 251 (306)
Q Consensus 249 ~~v 251 (306)
.|+
T Consensus 192 ~G~ 194 (299)
T cd02809 192 AGA 194 (299)
T ss_pred CCC
Confidence 865
No 314
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=95.80 E-value=0.58 Score=44.50 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=85.2
Q ss_pred HHHHHH-HHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEeccCCChHHHHH
Q psy4398 113 PERALE-AAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 113 ~~~~~~-aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g~~~~~~~~ 187 (306)
+++.++ ..+++. .|.|.+-+= ..+||++-+..-++++++.= ...++--+++--+.+..++
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiF---------------DAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~ 160 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIF---------------DALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVE 160 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEec---------------hhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHH
Confidence 345444 344554 488888772 34678888888888887642 2233444443336778999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC---CHHHHHHHHHhhh-hhcccc
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK---EIVDYGGVFSLNC-AFLRNH 257 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~---s~~~~~~~l~~~v-~vGral 257 (306)
+++.+++.|+|.|.+-+.. +...+...+++++.+++.+++||...---+ +...+-.++++|+ .+-+|+
T Consensus 161 ~akel~~~g~DSIciKDma--GlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAi 232 (472)
T COG5016 161 LAKELLEMGVDSICIKDMA--GLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTAI 232 (472)
T ss_pred HHHHHHHcCCCEEEeeccc--ccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhhhh
Confidence 9999999999999997653 223323468999999999999987654322 2455667777777 444443
No 315
>PLN02858 fructose-bisphosphate aldolase
Probab=95.79 E-value=0.17 Score=56.00 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=69.3
Q ss_pred cccCChHHHHHHHHHHHhcccccEEEEecc-C-C-C----------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--
Q psy4398 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV-F-H-N----------EADTIALCKRLEACGIIAIGVHGRTKAERPRH-- 213 (306)
Q Consensus 149 ~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g-~-~----------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-- 213 (306)
.+++|.+...++++.... .+++|-.-+.. + . + ..+..+..+-+++.|+|.+-+.=.+..+.|.+
T Consensus 1204 ~~eeNi~~t~~vv~~Ah~-~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~ 1282 (1378)
T PLN02858 1204 SFTENISYTKSISSLAHS-KGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASG 1282 (1378)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCC
Confidence 456677777888777654 36676666553 1 1 0 12344555555678999998755554455532
Q ss_pred -CCcHHHHHHHHhhC---CCcEEEecCCCC-HHHHHHHHHhhh
Q psy4398 214 -RNRIEMIRTLTQHL---KIPVIANGGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 214 -p~~~~~v~~i~~~~---~ipvia~GGI~s-~~~~~~~l~~~v 251 (306)
..+++.+++|++.+ ++|++..||-.. .++.+++++.|+
T Consensus 1283 p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi 1325 (1378)
T PLN02858 1283 PNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGV 1325 (1378)
T ss_pred CccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCC
Confidence 26899999999999 799999999664 456777777765
No 316
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.73 E-value=0.46 Score=42.55 Aligned_cols=131 Identities=16% Similarity=0.143 Sum_probs=88.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
|+...=+-.++.+..++.. .|+|+|-|.... -.++.+.++++... .++.-..|-+. +
T Consensus 104 PvL~KDFIid~~QI~ea~~---~GADavLLI~~~---------------L~~~~l~~l~~~a~-~lGle~LVEVh---~- 160 (247)
T PRK13957 104 PVLRKDFILDEIQIREARA---FGASAILLIVRI---------------LTPSQIKSFLKHAS-SLGMDVLVEVH---T- 160 (247)
T ss_pred CEEeccccCCHHHHHHHHH---cCCCEEEeEHhh---------------CCHHHHHHHHHHHH-HcCCceEEEEC---C-
Confidence 4444333344544443332 599999886432 13445666666654 36888888888 2
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh--hhhhccccC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL--NCAFLRNHY 258 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~--~v~vGrall 258 (306)
.+-++.+.++|++.|-|..|.....- .+++...++...+ +..+|+-+||.|++|+..+.+. ++-+|++++
T Consensus 161 ---~~El~~a~~~ga~iiGINnRdL~t~~---vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~~davLvG~~lm 234 (247)
T PRK13957 161 ---EDEAKLALDCGAEIIGINTRDLDTFQ---IHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKLVDAALIGTYFM 234 (247)
T ss_pred ---HHHHHHHHhCCCCEEEEeCCCCccce---ECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHhCCEEEECHHHh
Confidence 23344556689999999988755432 3566777777777 5778999999999999887654 569999999
Q ss_pred CCCC
Q psy4398 259 PVEK 262 (306)
Q Consensus 259 ~~p~ 262 (306)
+.+.
T Consensus 235 ~~~d 238 (247)
T PRK13957 235 EKKD 238 (247)
T ss_pred CCCC
Confidence 8664
No 317
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.73 E-value=0.8 Score=41.38 Aligned_cols=116 Identities=11% Similarity=0.141 Sum_probs=78.1
Q ss_pred eeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
+.+.+++.|.+++..++....-++ +.+-+|.+.| |+....+..++ +++. ..+.||
T Consensus 81 l~~~~~~~Gl~~~t~~~d~~~~~~------l~~~~d~lkI--------------~s~~~~n~~LL----~~~a-~~gkPV 135 (260)
T TIGR01361 81 LRRAADEHGLPVVTEVMDPRDVEI------VAEYADILQI--------------GARNMQNFELL----KEVG-KQGKPV 135 (260)
T ss_pred HHHHHHHhCCCEEEeeCChhhHHH------HHhhCCEEEE--------------CcccccCHHHH----HHHh-cCCCcE
Confidence 444555677788877754332221 1112567666 44555666654 4443 358999
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEE-cccCCC--CCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGV-HGRTKA--ERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v-~~~~~~--~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
.+|-....+.+++...++.+.+.|.+-|.+ |..+.. +......++..+..+++.+++||+.
T Consensus 136 ilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ 199 (260)
T TIGR01361 136 LLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIV 199 (260)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEE
Confidence 999998778999999999999999965554 643322 2223346899999999988999999
No 318
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.72 E-value=0.32 Score=42.59 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=64.1
Q ss_pred HHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC
Q psy4398 159 NILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK 238 (306)
Q Consensus 159 eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~ 238 (306)
++.+.+.+. ++..=+| +.+.++..++++.+.+.|++.|-++-+ .|..++.++++++.+.--+|+.|-|.
T Consensus 7 ~~~~~l~~~---~~iaV~r-~~~~~~a~~i~~al~~~Gi~~iEitl~-------~~~~~~~I~~l~~~~p~~~IGAGTVl 75 (212)
T PRK05718 7 SIEEILRAG---PVVPVIV-INKLEDAVPLAKALVAGGLPVLEVTLR-------TPAALEAIRLIAKEVPEALIGAGTVL 75 (212)
T ss_pred HHHHHHHHC---CEEEEEE-cCCHHHHHHHHHHHHHcCCCEEEEecC-------CccHHHHHHHHHHHCCCCEEEEeecc
Confidence 344555443 4444455 357889999999999999999999833 34567899999998865789999999
Q ss_pred CHHHHHHHHHhhh
Q psy4398 239 EIVDYGGVFSLNC 251 (306)
Q Consensus 239 s~~~~~~~l~~~v 251 (306)
+.++++.++++|+
T Consensus 76 ~~~~a~~a~~aGA 88 (212)
T PRK05718 76 NPEQLAQAIEAGA 88 (212)
T ss_pred CHHHHHHHHHcCC
Confidence 9999999999765
No 319
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=95.69 E-value=0.56 Score=44.45 Aligned_cols=125 Identities=14% Similarity=0.268 Sum_probs=84.5
Q ss_pred CceEEEecCCCHH-HHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc--cEEEEec
Q psy4398 102 NKIILQIGTADPE-RALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI--PVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~~-~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir 177 (306)
.|+-..+...+++ ...++.+..+ .||..+-+.+|- .+++.-.+.++++|+.++. .+.+-..
T Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~~~re~~g~~~~l~~DaN 195 (368)
T TIGR02534 131 VDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIGA---------------RDPADDVAHVVAIAKALGDRASVRVDVN 195 (368)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeCC---------------CCcHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 4555555555544 3444444444 599999986542 1234446677888888743 3333333
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+|+.+++.++++.+++.++.+|- ++. .+.+++..+++++.+++||.+.=.+.+..++.++++.
T Consensus 196 ~~~~~~~A~~~~~~l~~~~~~~iE-------eP~-~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~ 259 (368)
T TIGR02534 196 AAWDERTALHYLPQLADAGVELIE-------QPT-PAENREALARLTRRFNVPIMADESVTGPADALAIAKA 259 (368)
T ss_pred CCCCHHHHHHHHHHHHhcChhheE-------CCC-CcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh
Confidence 368899999999999998876552 222 2346788889999999999887778889888888775
No 320
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.68 E-value=0.075 Score=51.19 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHHHHcCCcEEEEcccCC---CCCCCCCCcHHHHHHHHhhC---------CCcEEEecCCCCHHHHHHHHHhhh---hh
Q psy4398 189 CKRLEACGIIAIGVHGRTK---AERPRHRNRIEMIRTLTQHL---------KIPVIANGGSKEIVDYGGVFSLNC---AF 253 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~---~~~~~~p~~~~~v~~i~~~~---------~ipvia~GGI~s~~~~~~~l~~~v---~v 253 (306)
+..+++.|+|+|.+..... +.....|..++.++++++.+ ++||+|-||| +.+++.++++.|+ ++
T Consensus 313 l~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVAV 391 (437)
T PRK12290 313 LLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLAV 391 (437)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 4555678999999865432 22233456788887776654 6999999999 5899999998754 77
Q ss_pred ccccCCCC
Q psy4398 254 LRNHYPVE 261 (306)
Q Consensus 254 Grall~~p 261 (306)
=|+++..+
T Consensus 392 VSAI~~A~ 399 (437)
T PRK12290 392 VRAITLAE 399 (437)
T ss_pred ehHhhcCC
Confidence 77876533
No 321
>PRK14057 epimerase; Provisional
Probab=95.64 E-value=0.42 Score=42.94 Aligned_cols=154 Identities=12% Similarity=0.080 Sum_probs=91.0
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
..++..+|...+...+.+-.+.+++ |+|.+-+.+- +|| .-+--++++++++ ..|+.|=
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN---------------itfGp~~i~~i~~--~~p~DvH 81 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ---------------FTVGPWAVGQLPQ--TFIKDVH 81 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCc---------------cccCHHHHHHhcc--CCCeeEE
Confidence 4578999999999999998888876 8888766532 344 1122334555544 4565555
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEccc-----------------------------------CC-------------
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGR-----------------------------------TK------------- 207 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~-----------------------------------~~------------- 207 (306)
+=. ++...+++.+.++|+|.|++|.- |+
T Consensus 82 LMV----~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~ 157 (254)
T PRK14057 82 LMV----ADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEV 157 (254)
T ss_pred eee----CCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCE
Confidence 442 12345556666667776666532 10
Q ss_pred ------CCCCCC----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCCchHH--H
Q psy4398 208 ------AERPRH----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEKLPKT--I 267 (306)
Q Consensus 208 ------~~~~~~----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~~~~~--~ 267 (306)
..++.+ +..++-++++++.. ++.|-.=|||+ .+++..+.++|+ .+|++++.++...+. .
T Consensus 158 VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~ 236 (254)
T PRK14057 158 IQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQGIDRVVSGSALFRDDRLVENTRS 236 (254)
T ss_pred EEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHH
Confidence 111111 11234445544432 35577779987 678888888876 889999975543221 4
Q ss_pred HHHHHHhcC
Q psy4398 268 LYAHCKYKR 276 (306)
Q Consensus 268 l~~~~~~~g 276 (306)
++..+...|
T Consensus 237 l~~~~~~~~ 245 (254)
T PRK14057 237 WRAMFKVAG 245 (254)
T ss_pred HHHHHhhcC
Confidence 444444444
No 322
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=95.60 E-value=0.28 Score=47.04 Aligned_cols=113 Identities=14% Similarity=0.168 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHH-h-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKV-E-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~-~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+.++.+ + .||..+-+..|- .+++.-.+.++++|+.++ +.+.+-...+|+.+++.++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 677777666654 3 499999997542 124444667888888773 3455554456899999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++.+++ ++..+- ++. + +++..+++++.+++||.+.=-+.+.++++++++.+
T Consensus 233 ~~~l~~-~l~~iE-------eP~--~-d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~ 283 (395)
T cd03323 233 AKELEG-VLAYLE-------DPC--G-GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN 283 (395)
T ss_pred HHhcCc-CCCEEE-------CCC--C-CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC
Confidence 999998 776552 222 2 77888999999999988766677888888888753
No 323
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.60 E-value=0.11 Score=47.19 Aligned_cols=85 Identities=8% Similarity=0.039 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-----CC
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-----KI 229 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-----~i 229 (306)
+.+.++.+|+... .++.|-++ ..+-++.+.++|+|.|.+... +.+.++++.+.. ++
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~-------tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~ 230 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECE-------SLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHV 230 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeC-------CHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCe
Confidence 4677777777664 55777666 345555666799999987643 335555444431 45
Q ss_pred cEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 230 PVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 230 pvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+.++||| +++++.++.+.|+ .+|+....
T Consensus 231 ~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~s 262 (273)
T PRK05848 231 LLEASGNI-TLENINAYAKSGVDAISSGSLIHQ 262 (273)
T ss_pred EEEEECCC-CHHHHHHHHHcCCCEEEeChhhcC
Confidence 69999999 8999999999876 77776653
No 324
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=95.59 E-value=0.25 Score=44.17 Aligned_cols=97 Identities=26% Similarity=0.417 Sum_probs=68.5
Q ss_pred CCCHHHH-HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC--------
Q psy4398 110 TADPERA-LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF-------- 179 (306)
Q Consensus 110 g~~~~~~-~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g-------- 179 (306)
+.++++. ..|++.+++ |+|+|-|. |+ ..+.+.++.+.+. ++||.-=+.+-
T Consensus 89 ~~s~~~a~~nA~r~~ke~gA~aVKlE-------------GG------~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~G 148 (268)
T COG0413 89 EVSPEQALKNAARLMKEAGADAVKLE-------------GG------EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLG 148 (268)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEc-------------CC------HHHHHHHHHHHHc-CCceEEEecCChhhhhccC
Confidence 3356554 555566675 89999994 22 3456666776553 78988766651
Q ss_pred ------CCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 180 ------HNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 180 ------~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
-+. +...+-|+.++++|+-.+.+-+. | -++.++|-+.+++|+|+-|-
T Consensus 149 GykvqGr~~~~a~~l~~dA~ale~AGaf~ivlE~V--------p--~~lA~~IT~~lsiPtIGIGA 204 (268)
T COG0413 149 GYKVQGRTEESAEKLLEDAKALEEAGAFALVLECV--------P--AELAKEITEKLSIPTIGIGA 204 (268)
T ss_pred CeeeecCCHHHHHHHHHHHHHHHhcCceEEEEecc--------H--HHHHHHHHhcCCCCEEeecC
Confidence 122 23677889999999999998654 2 26889999999999998875
No 325
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=95.58 E-value=0.25 Score=47.00 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=68.0
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc--cE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI--PV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv 172 (306)
.+.|++..++ |-+++.+++.+..+.. |+|+|-..-+.-+ ..-..+.+|.+.+.+.++++.+.++. ++
T Consensus 128 ~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge------~~~~~~eER~~~v~~av~~a~~~TG~~~~y 201 (367)
T cd08205 128 HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLAD------QPYAPFEERVRACMEAVRRANEETGRKTLY 201 (367)
T ss_pred CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccC------cccCCHHHHHHHHHHHHHHHHHhhCCcceE
Confidence 4678888875 5678999999887754 8999855322111 11123456777888888888877643 34
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.+-++ .+.+++.+.++.++++|+|++.+..
T Consensus 202 ~~nit--~~~~e~i~~a~~a~~~Gad~vmv~~ 231 (367)
T cd08205 202 APNIT--GDPDELRRRADRAVEAGANALLINP 231 (367)
T ss_pred EEEcC--CCHHHHHHHHHHHHHcCCCEEEEec
Confidence 45554 4458899999999999999998743
No 326
>PLN02417 dihydrodipicolinate synthase
Probab=95.54 E-value=0.34 Score=44.18 Aligned_cols=124 Identities=13% Similarity=0.023 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~Gst----------GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i~ 87 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS-NSTREAIH 87 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccC----------cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC-ccHHHHHH
Confidence 35667777777554 599999996443 1122222333344555444444 3688877763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia------~GGI~s~~~~~~~l~ 248 (306)
+++.++++|+|++.+....-. ......-.++.+.+.++. ||+. +|---+++.++++.+
T Consensus 88 ~a~~a~~~Gadav~~~~P~y~-~~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 88 ATEQGFAVGMHAALHINPYYG-KTSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred HHHHHHHcCCCEEEEcCCccC-CCCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 999999999999998754311 111111245566777654 7753 233335666655543
No 327
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=95.51 E-value=0.14 Score=44.22 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=56.3
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++..=+|. .+.++..++++.+.+.|+..+-++-++ |..++.++++++.+.--+++.|.|.|.+++++++++|
T Consensus 9 ~iiaVir~-~~~~~a~~~~~al~~gGi~~iEiT~~t-------~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG 80 (196)
T PF01081_consen 9 KIIAVIRG-DDPEDAVPIAEALIEGGIRAIEITLRT-------PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG 80 (196)
T ss_dssp SEEEEETT-SSGGGHHHHHHHHHHTT--EEEEETTS-------TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC
Confidence 44545553 467889999999999999999998765 4577899999988866789999999999999999976
Q ss_pred h
Q psy4398 251 C 251 (306)
Q Consensus 251 v 251 (306)
+
T Consensus 81 A 81 (196)
T PF01081_consen 81 A 81 (196)
T ss_dssp -
T ss_pred C
Confidence 5
No 328
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.47 E-value=0.36 Score=42.59 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=60.7
Q ss_pred HHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CC--cEEEe
Q psy4398 159 NILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KI--PVIAN 234 (306)
Q Consensus 159 eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~i--pvia~ 234 (306)
++++.+.+. ++..=+|. .+.++..++++.+.+.|+..+-++-++ |..++.++++++.. .. -++++
T Consensus 7 ~~~~~l~~~---~vi~Vvr~-~~~~~a~~~~~al~~gGi~~iEiT~~t-------p~a~~~i~~l~~~~~~~~p~~~vGa 75 (222)
T PRK07114 7 AVLTAMKAT---GMVPVFYH-ADVEVAKKVIKACYDGGARVFEFTNRG-------DFAHEVFAELVKYAAKELPGMILGV 75 (222)
T ss_pred HHHHHHHhC---CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------CcHHHHHHHHHHHHHhhCCCeEEee
Confidence 344555443 44444552 567889999999999999999998654 45677888876544 22 38999
Q ss_pred cCCCCHHHHHHHHHhhh
Q psy4398 235 GGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v 251 (306)
|-|.|.++++++++.|+
T Consensus 76 GTVl~~e~a~~a~~aGA 92 (222)
T PRK07114 76 GSIVDAATAALYIQLGA 92 (222)
T ss_pred EeCcCHHHHHHHHHcCC
Confidence 99999999999998654
No 329
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.47 E-value=0.54 Score=44.00 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=67.8
Q ss_pred cccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc---EEEEcccCCCCCCCCCCcHHHHHHH
Q psy4398 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII---AIGVHGRTKAERPRHRNRIEMIRTL 223 (306)
Q Consensus 147 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d---~i~v~~~~~~~~~~~p~~~~~v~~i 223 (306)
|+.-+++..++.++. + .+.||.++... .+.+++...++.+.+.|.+ .+.+|+.+.........++..+..+
T Consensus 116 aS~~~~n~pLL~~~A----~-~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~L 189 (329)
T TIGR03569 116 PSGEITNAPLLKKIA----R-FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTL 189 (329)
T ss_pred CcccccCHHHHHHHH----h-cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHH
Confidence 344456666655543 3 58999999987 4788899999999999985 6667876543333345689999999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 224 TQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 224 ~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
++.+++||..++=-....-...++..|+
T Consensus 190 k~~f~~pVG~SdHt~G~~~~~aAvalGA 217 (329)
T TIGR03569 190 KEAFDLPVGYSDHTLGIEAPIAAVALGA 217 (329)
T ss_pred HHHhCCCEEECCCCccHHHHHHHHHcCC
Confidence 9999999988754333333333333343
No 330
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.46 E-value=0.63 Score=43.78 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=79.2
Q ss_pred CceEEEecCCCH-HHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 102 NKIILQIGTADP-ERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 102 ~p~ivql~g~~~-~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
.|+-..+...++ +++.+.++.+ ++||..+-+.++ | +.-.+.++++|+.++ .+++++
T Consensus 126 v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~-~-----------------~~d~~~l~~vr~~~g---~~~l~lD 184 (354)
T cd03317 126 IPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK-P-----------------GWDVEPLKAVRERFP---DIPLMAD 184 (354)
T ss_pred EEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC-h-----------------HHHHHHHHHHHHHCC---CCeEEEE
Confidence 355545543333 6666666655 459999998753 1 112455778887764 344444
Q ss_pred ---CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 179 ---FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 179 ---g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+|+.++. .+++.+++.++.+|- ++. .+.+++-.+++++.+++||.+-=.+.+++++.++++.
T Consensus 185 aN~~~~~~~a-~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~ 249 (354)
T cd03317 185 ANSAYTLADI-PLLKRLDEYGLLMIE-------QPL-AADDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL 249 (354)
T ss_pred CCCCCCHHHH-HHHHHhhcCCccEEE-------CCC-ChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc
Confidence 5787776 478889888876663 222 2346778889999999999877678889998888875
No 331
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.46 E-value=0.39 Score=42.08 Aligned_cols=81 Identities=23% Similarity=0.215 Sum_probs=62.9
Q ss_pred HHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCC---cEEEecC
Q psy4398 160 ILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKI---PVIANGG 236 (306)
Q Consensus 160 iv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~i---pvia~GG 236 (306)
+++.+.+. ++..=+|. .+.++...+++.+.+.|+..+-++-++ |..++.++++++.++- -+++.|-
T Consensus 6 ~~~~l~~~---~vi~vir~-~~~~~a~~~~~al~~~Gi~~iEit~~~-------~~a~~~i~~l~~~~~~~p~~~vGaGT 74 (213)
T PRK06552 6 ILTKLKAN---GVVAVVRG-ESKEEALKISLAVIKGGIKAIEVTYTN-------PFASEVIKELVELYKDDPEVLIGAGT 74 (213)
T ss_pred HHHHHHHC---CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEECCC-------ccHHHHHHHHHHHcCCCCCeEEeeee
Confidence 34444443 45544553 467889999999999999999998654 4577899999988732 3899999
Q ss_pred CCCHHHHHHHHHhhh
Q psy4398 237 SKEIVDYGGVFSLNC 251 (306)
Q Consensus 237 I~s~~~~~~~l~~~v 251 (306)
|.|.++++.+++.|+
T Consensus 75 V~~~~~~~~a~~aGA 89 (213)
T PRK06552 75 VLDAVTARLAILAGA 89 (213)
T ss_pred CCCHHHHHHHHHcCC
Confidence 999999999999754
No 332
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=95.43 E-value=0.99 Score=41.75 Aligned_cols=148 Identities=9% Similarity=0.064 Sum_probs=94.5
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCC
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHN 181 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~ 181 (306)
....|...+++...+.+.. +.||..+-+..|- .+++.-.+.++++|+.++ ..+.+-...+|+
T Consensus 103 ~~~~l~~~~~~~~~~~~~~-~~Gf~~~KiKvG~---------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~ 166 (307)
T TIGR01927 103 YVALLPAGDPALLLLRSAK-AEGFRTFKWKVGV---------------GELAREGMLVNLLLEALPDKAELRLDANGGLS 166 (307)
T ss_pred ceeeccCCCHHHHHHHHHH-hCCCCEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCCeEEEeCCCCCC
Confidence 3444555667666554444 5599999886542 134444677888888774 233333333689
Q ss_pred hHHHHHHHHHHHH---cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 182 EADTIALCKRLEA---CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 182 ~~~~~~~a~~l~~---~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
.+++.++++.+++ .++++|- ++. +.. +..+++++.+++||.+.=.+.+..++..+++.+.. ..+-
T Consensus 167 ~~~A~~~~~~l~~~~~~~i~~iE-------qP~--~~~-~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~--d~i~ 234 (307)
T TIGR01927 167 PDEAQQFLKALDPNLRGRIAFLE-------EPL--PDA-DEMSAFSEATGTAIALDESLWELPQLADEYGPGWR--GALV 234 (307)
T ss_pred HHHHHHHHHhcccccCCCceEEe-------CCC--CCH-HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCC--ceEE
Confidence 9999999999997 6676663 222 112 67788999999999887778889998888875330 0011
Q ss_pred CCC-Cc----hHHHHHHHHHhcCCCC
Q psy4398 259 PVE-KL----PKTILYAHCKYKRFEV 279 (306)
Q Consensus 259 ~~p-~~----~~~~l~~~~~~~g~~~ 279 (306)
-+| .+ .-..+.+....+|++.
T Consensus 235 ik~~~~GGi~~~~~i~~~a~~~gi~~ 260 (307)
T TIGR01927 235 IKPAIIGSPAKLRDLAQKAHRLGLQA 260 (307)
T ss_pred ECchhcCCHHHHHHHHHHHHHcCCCE
Confidence 122 11 1236667778888773
No 333
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=95.39 E-value=1 Score=39.32 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=86.0
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
.++++-+-..|...+. ++.+ ++|+|.+-+-+..| ...+.+.++..++ .+.-+.+-+-..|
T Consensus 57 ~~IvAD~Kt~D~G~~e--~~ma~~aGAd~~tV~g~A~----------------~~TI~~~i~~A~~-~~~~v~iDl~~~~ 117 (217)
T COG0269 57 KIIVADLKTADAGAIE--ARMAFEAGADWVTVLGAAD----------------DATIKKAIKVAKE-YGKEVQIDLIGVW 117 (217)
T ss_pred CeEEeeeeecchhHHH--HHHHHHcCCCEEEEEecCC----------------HHHHHHHHHHHHH-cCCeEEEEeecCC
Confidence 4566666555543332 2334 46999999843332 3344555555444 4555556555345
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhh---hhhcc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--IPVIANGGSKEIVDYGGVFSLN---CAFLR 255 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--ipvia~GGI~s~~~~~~~l~~~---v~vGr 255 (306)
+ ..+-++.+++.|+|.+.+|-..-.+.....+.++.+..+++..+ ..|-..|||. ++++..+...+ +.+||
T Consensus 118 ~---~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~~~~~~ivIvGr 193 (217)
T COG0269 118 D---PEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFKGIGADIVIVGR 193 (217)
T ss_pred C---HHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCC-HHHHHHHhcCCCCEEEECc
Confidence 4 45666777779999999985432222111224677888888875 7898999986 88888888764 49999
Q ss_pred ccCC
Q psy4398 256 NHYP 259 (306)
Q Consensus 256 all~ 259 (306)
++-.
T Consensus 194 aIt~ 197 (217)
T COG0269 194 AITG 197 (217)
T ss_pred hhcC
Confidence 9864
No 334
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=95.35 E-value=0.46 Score=44.69 Aligned_cols=141 Identities=11% Similarity=0.105 Sum_probs=88.0
Q ss_pred CCCCceEEEecCCC-H--HHHHHHHHHH----h-c---CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 99 REKNKIILQIGTAD-P--ERALEAAKKV----E-H---DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 99 ~~~~p~ivql~g~~-~--~~~~~aa~~~----~-~---g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
+...|+++.|-|.. . +...+|.+.- . . ||+-|.+..|. -.++++.+...++++....
T Consensus 97 ~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~-----------lpfeENI~~TrevVe~Ah~- 164 (357)
T TIGR01520 97 HYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSE-----------EPIEENIEICVKYLKRMAK- 164 (357)
T ss_pred HCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCC-----------CCHHHHHHHHHHHHHHHHH-
Confidence 35689999997664 3 2233343321 1 1 49999996442 2356777888888877543
Q ss_pred ccccEEEEecc-C-----------------CChHHHHHHHHHHH-HcCCcEEEEcccCCCCCCC-C--CCcHHHHHHH--
Q psy4398 168 LSIPVSCKIRV-F-----------------HNEADTIALCKRLE-ACGIIAIGVHGRTKAERPR-H--RNRIEMIRTL-- 223 (306)
Q Consensus 168 ~~~pv~vKir~-g-----------------~~~~~~~~~a~~l~-~~G~d~i~v~~~~~~~~~~-~--p~~~~~v~~i-- 223 (306)
.+++|-.-+.. | -++++..++++... ..|+|.+-+.=.+..+.|. + ..+++.+++|
T Consensus 165 ~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~ 244 (357)
T TIGR01520 165 IKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQE 244 (357)
T ss_pred cCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHH
Confidence 46666655543 1 02223333333321 1389999875555444552 2 3588999999
Q ss_pred --HhhCCCc------EEEecCCCCH-HHHHHHHHhhh
Q psy4398 224 --TQHLKIP------VIANGGSKEI-VDYGGVFSLNC 251 (306)
Q Consensus 224 --~~~~~ip------via~GGI~s~-~~~~~~l~~~v 251 (306)
++.+++| ++..||-... ++.+++++.|+
T Consensus 245 ~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI 281 (357)
T TIGR01520 245 YVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGV 281 (357)
T ss_pred HHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCC
Confidence 4666888 9999997765 77888888876
No 335
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=95.33 E-value=0.26 Score=43.28 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=64.4
Q ss_pred EEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc---C--
Q psy4398 106 LQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV---F-- 179 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~---g-- 179 (306)
++|.+.+.+++.+-++.+.. |+|.|||-+- .+.. ...+.+.+.+..++..++.|+.+=+|. |
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD---------~l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~ 69 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLD---------YLEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGR 69 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGG---------GSTT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSS
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEec---------cccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCCC
Confidence 67788899998877777766 9999999543 2221 456788889999988889999998886 2
Q ss_pred --CChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 180 --HNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 180 --~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.+.++-.++.+.+.+.|+|+|.|.-
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~ 96 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIEL 96 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEG
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 1345678899999999999999853
No 336
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=95.29 E-value=0.4 Score=45.52 Aligned_cols=94 Identities=5% Similarity=-0.023 Sum_probs=69.1
Q ss_pred CCCceEEEec---CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhccc--cc
Q psy4398 100 EKNKIILQIG---TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IP 171 (306)
Q Consensus 100 ~~~p~ivql~---g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~p 171 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-- |++.+.. ..+.+|.+.+.+.+++..+.++ ++
T Consensus 124 ~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~--------~p~~eRv~~v~~av~~a~~eTG~~~~ 195 (364)
T cd08210 124 PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPF--------APFEERVKACQEAVAEANAETGGRTL 195 (364)
T ss_pred CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccC--------CCHHHHHHHHHHHHHHHHhhcCCcce
Confidence 4678888764 7789999999887765 8999833 2443221 2345677788888888887775 45
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+.+-++ -+.++..+-++.++++|++++-+.
T Consensus 196 y~~Nit--a~~~em~~ra~~a~~~Ga~~vMv~ 225 (364)
T cd08210 196 YAPNVT--GPPTQLLERARFAKEAGAGGVLIA 225 (364)
T ss_pred EEEecC--CCHHHHHHHHHHHHHcCCCEEEee
Confidence 666666 456789999999999999999874
No 337
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=95.26 E-value=0.57 Score=45.66 Aligned_cols=143 Identities=13% Similarity=0.161 Sum_probs=92.3
Q ss_pred CHHHHHHHHHH-Hh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKK-VE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~-~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+-|+. .+ .||..+-+.+|.+. ++.-.+.++++|+.+ ++.+.+-...+|+.++++++
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~---------------~~~Di~~v~avRea~~d~~L~vDAN~~wt~~~Ai~~ 244 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVLR---------------GEEEIEAVTALAKRFPQARITLDPNGAWSLDEAIAL 244 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCC---------------hHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 56777655553 44 49999999765321 233356678888776 23344444446899999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCC--
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNR----IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVE-- 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~----~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p-- 261 (306)
++.+++. +..+ +++.. +.+ ++..+++++.+++||.+.=.+.+..+++++++.++ .+ +.-++
T Consensus 245 ~~~Le~~-~~~i-------EePv~-~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi---~~~d~~~ 312 (441)
T TIGR03247 245 CKDLKGV-LAYA-------EDPCG-AEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDI---PLADPHF 312 (441)
T ss_pred HHHhhhh-hceE-------eCCCC-cccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCE---EeccCCc
Confidence 9999986 5543 23322 234 78889999999999988666788888888887632 11 11122
Q ss_pred --CchHHHHHHHHHhcCCCCCc
Q psy4398 262 --KLPKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 262 --~~~~~~l~~~~~~~g~~~~~ 281 (306)
...-..+.+..+.+|+.+.+
T Consensus 313 gGIt~~~kIa~lA~a~Gi~v~~ 334 (441)
T TIGR03247 313 WTMQGSVRVAQMCHDWGLTWGS 334 (441)
T ss_pred chHHHHHHHHHHHHHcCCEEEE
Confidence 11123666777788877443
No 338
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.25 E-value=0.066 Score=46.81 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
..+..++|+.++++|+++|++..-.. ... ..++.++.+++.+++||+.-|+|.+.+.++.+.+.|+ .++...+
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~--~~~--g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPK--YFQ--GSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCcc--ccC--CCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 45689999999999999999864321 121 2557888888888999999999999999999988765 4555444
No 339
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.20 E-value=1.3 Score=40.39 Aligned_cols=93 Identities=11% Similarity=0.193 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhc-ccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC-----CCC-CcHHHHHHHHhhC
Q psy4398 155 DIACNILTTLISN-LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP-----RHR-NRIEMIRTLTQHL 227 (306)
Q Consensus 155 ~~~~eiv~~v~~~-~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~-----~~p-~~~~~v~~i~~~~ 227 (306)
+.+.+-++..++. .+.|+.+=+.. .+.++..+.++.++++|+|+|.++...+.... ..+ .-.+.++++++.+
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV 161 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc
Confidence 3333333444443 46888887763 46788999999999999999998654322111 111 1235678888888
Q ss_pred CCcEEEe-cCCCCHHHHHHHHH
Q psy4398 228 KIPVIAN-GGSKEIVDYGGVFS 248 (306)
Q Consensus 228 ~ipvia~-GGI~s~~~~~~~l~ 248 (306)
++||+.= +...+.++..++.+
T Consensus 162 ~~pv~vKl~~~~~~~~~~~~a~ 183 (289)
T cd02810 162 DIPLLVKLSPYFDLEDIVELAK 183 (289)
T ss_pred CCCEEEEeCCCCCHHHHHHHHH
Confidence 8998753 44445444444443
No 340
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=95.19 E-value=0.19 Score=45.16 Aligned_cols=138 Identities=15% Similarity=0.166 Sum_probs=62.2
Q ss_pred CCceEEEecCCCH-HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCC---hHHHHHHHHHHHhcccccEEEE
Q psy4398 101 KNKIILQIGTADP-ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLST---PDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 101 ~~p~ivql~g~~~-~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~---~~~~~eiv~~v~~~~~~pv~vK 175 (306)
+.|++.=+++.|| -++....+.+++ ||.+|. |+ |.--...+.+...|++. .+.=.|+++..++. +.. ++-
T Consensus 81 ~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~-gl~-T~~ 155 (268)
T PF09370_consen 81 DTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEK-GLF-TTA 155 (268)
T ss_dssp SS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHT-T-E-E--
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHC-CCe-eee
Confidence 4799999999988 345556667765 999985 44 43111111122222211 11223444444432 221 111
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---CCcH----HHHHHHHhh---C--CCcEEEecC-CCCHHH
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH---RNRI----EMIRTLTQH---L--KIPVIANGG-SKEIVD 242 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---p~~~----~~v~~i~~~---~--~ipvia~GG-I~s~~~ 242 (306)
.- .+ .+-|+.+.++|+|.|.+|-..-.+...+ ...+ +.+.++.++ + ++-+++.|| |.+++|
T Consensus 156 yv--f~----~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D 229 (268)
T PF09370_consen 156 YV--FN----EEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPED 229 (268)
T ss_dssp EE---S----HHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHH
T ss_pred ee--cC----HHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHH
Confidence 11 23 3445566689999999985432222211 1122 333444443 3 344555555 999999
Q ss_pred HHHHHHh
Q psy4398 243 YGGVFSL 249 (306)
Q Consensus 243 ~~~~l~~ 249 (306)
++.+++.
T Consensus 230 ~~~~l~~ 236 (268)
T PF09370_consen 230 AQYVLRN 236 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999985
No 341
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=95.14 E-value=1.9 Score=40.39 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=104.2
Q ss_pred cccccccccc--CCceEEccCCCCCCH--H--HHHH--HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINY--SNKIILAPMVRMNTL--P--FRLL--ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l--~n~i~lAPm~~~t~~--~--~r~~--~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
.++++|++.+ .||+.+=+|+...+. . ..++ ..+.||.++=.-.-..+.. ....
T Consensus 13 r~V~VG~v~iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a-~al~------------------ 73 (360)
T PRK00366 13 RQVKVGNVPIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAA-AALP------------------ 73 (360)
T ss_pred eEEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHH-HhHH------------------
Confidence 4577888776 899999999953221 1 3332 2478988874432111111 0000
Q ss_pred eeeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+. .....|++.-| |.++ .-|.+.++.|+|.|-||=| ++ .+..+.+.+++++.++. ++|
T Consensus 74 ~I~---~~~~iPlvADI-HFd~---~lAl~a~~~G~~~iRINPG---------Ni----g~~~~~v~~vv~~ak~~-~ip 132 (360)
T PRK00366 74 EIK---KQLPVPLVADI-HFDY---RLALAAAEAGADALRINPG---------NI----GKRDERVREVVEAAKDY-GIP 132 (360)
T ss_pred HHH---HcCCCCEEEec-CCCH---HHHHHHHHhCCCEEEECCC---------CC----CchHHHHHHHHHHHHHC-CCC
Confidence 011 11247899888 4443 3344445569999999833 22 23477889999998875 778
Q ss_pred EEEEeccC------------CCh----HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE
Q psy4398 172 VSCKIRVF------------HNE----ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI 232 (306)
Q Consensus 172 v~vKir~g------------~~~----~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi 232 (306)
+-+.+..| ++. +.+.+.++.+++.|.+-|.++-...+- +..++..+.+++.++.|+-
T Consensus 133 IRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v----~~~i~ayrlla~~~dyPLH 205 (360)
T PRK00366 133 IRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKASDV----QDLIAAYRLLAKRCDYPLH 205 (360)
T ss_pred EEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCH----HHHHHHHHHHHhcCCCCce
Confidence 77766543 122 346788999999999999987653321 2245566777777787753
No 342
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.13 E-value=2.6 Score=38.70 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=105.0
Q ss_pred CCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhh-cccccccccCCCCCceeeecCCCCCCceEEEe
Q psy4398 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN-DLLNTIDFVDPLDGSVVFRTCPREKNKIILQI 108 (306)
Q Consensus 30 ~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql 108 (306)
++.++++|.+ -|.-=..++.+.|+..++|-....... .+ .++ ++++-.+... ...+.+...+.|+++-+
T Consensus 13 ~~~~~~~pg~--~D~lSAri~e~aGf~ai~~ss~~va~s-lG--~pD~g~l~~~e~~~-----~~~~I~~~~~lPv~aD~ 82 (290)
T TIGR02321 13 SGRLFTAMAA--HNPLVAKLAEQAGFGGIWGSGFELSAS-YA--VPDANILSMSTHLE-----MMRAIASTVSIPLIADI 82 (290)
T ss_pred CCCCEEeccc--cCHHHHHHHHHcCCCEEEECHHHHHHH-CC--CCCcccCCHHHHHH-----HHHHHHhccCCCEEEEC
Confidence 4567888877 333333445678998877764322111 11 111 1111100000 01112223467999987
Q ss_pred c---CCCHHHHHHHHHHHh-cCCCEEEEccC-CCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc----
Q psy4398 109 G---TADPERALEAAKKVE-HDVAAIDINMG-CPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV---- 178 (306)
Q Consensus 109 ~---g~~~~~~~~aa~~~~-~g~d~veln~g-cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~---- 178 (306)
- |+.+ +..+..+.+. .|+.+|.|.=. .|..+-.. .-|..-.-+++...+-|++++++- +.++.+=-|.
T Consensus 83 d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~-~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~ 160 (290)
T TIGR02321 83 DTGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLR-TDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALI 160 (290)
T ss_pred CCCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccc-cCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 3 4444 5777777665 49999999533 22210000 001111224444444455555433 4444444332
Q ss_pred -CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--CcEEEecC---CCCHHHHHHH
Q psy4398 179 -FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--IPVIANGG---SKEIVDYGGV 246 (306)
Q Consensus 179 -g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--ipvia~GG---I~s~~~~~~~ 246 (306)
+...+++++=+++..++|+|.|-+++.. .+.+.+.++.+.++ +|++.+.| ..+.++..++
T Consensus 161 ~~~g~deAI~Ra~aY~eAGAD~ifv~~~~--------~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~l 226 (290)
T TIGR02321 161 AGLGQQEAVRRGQAYEEAGADAILIHSRQ--------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAAL 226 (290)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecCCC--------CCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHh
Confidence 2245778888999999999999987521 24578888888885 58866533 3345555553
No 343
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.09 E-value=0.48 Score=44.90 Aligned_cols=117 Identities=19% Similarity=0.171 Sum_probs=78.1
Q ss_pred eeeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+.+.+++.|.+++..++.... ...++ +. +|.+.| |+..+.+..++ +++. ..+.|
T Consensus 173 ~L~~~~~~~Gl~~~t~v~d~~~--~~~l~---~~-vd~lkI--------------~s~~~~n~~LL----~~~a-~~gkP 227 (360)
T PRK12595 173 ILKQVADEYGLAVISEIVNPAD--VEVAL---DY-VDVIQI--------------GARNMQNFELL----KAAG-RVNKP 227 (360)
T ss_pred HHHHHHHHcCCCEEEeeCCHHH--HHHHH---Hh-CCeEEE--------------CcccccCHHHH----HHHH-ccCCc
Confidence 3445556678888877754322 22111 22 677766 44555665554 4443 35899
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEE-Ec-ccCCCCCC-CCCCcHHHHHHHHhhCCCcEEE
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIG-VH-GRTKAERP-RHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~-v~-~~~~~~~~-~~p~~~~~v~~i~~~~~ipvia 233 (306)
|.+|-....+.+++...++.+.+.|..-|. +| |.+.-..+ ....++..+..+++.+++||+.
T Consensus 228 Vilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~ 292 (360)
T PRK12595 228 VLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMV 292 (360)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEE
Confidence 999999777889999999999999985554 55 44322212 2335899999999999999998
No 344
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=94.98 E-value=0.24 Score=49.02 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=52.2
Q ss_pred HHHHHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh------hhhhccccCC
Q psy4398 189 CKRLEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL------NCAFLRNHYP 259 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~------~v~vGrall~ 259 (306)
+..+.+.|+|+|.+....... ....|..++.++++.+..++||++-|||+ .+++.++++. +++++++++.
T Consensus 403 ~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHHHcCCCcCceEEEEeHHhc
Confidence 456667899999865432111 11235578999999988899999999996 8888888875 5578898874
No 345
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=94.97 E-value=0.53 Score=44.21 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=88.5
Q ss_pred CCCCceEEEecCCCH------HHHHHHH----HHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 99 REKNKIILQIGTADP------ERALEAA----KKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 99 ~~~~p~ivql~g~~~------~~~~~aa----~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
+...|+++.|-|... +...+|. +++ ..||+-|.+..|. -.++++.+...++++....
T Consensus 85 ~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~-----------lp~eENI~~TkevVe~Ah~- 152 (345)
T cd00946 85 HYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSE-----------EPLEENIEICKKYLERMAK- 152 (345)
T ss_pred HCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCC-----------CCHHHHHHHHHHHHHHHHH-
Confidence 357899999976532 2222221 222 4599999997553 2356677888888877743
Q ss_pred ccccEEEEecc--C----------------CChHHHHHHHHHHHH-cCCcEEEEcccCCCCCCC-C--CCcHHHHHHH--
Q psy4398 168 LSIPVSCKIRV--F----------------HNEADTIALCKRLEA-CGIIAIGVHGRTKAERPR-H--RNRIEMIRTL-- 223 (306)
Q Consensus 168 ~~~pv~vKir~--g----------------~~~~~~~~~a~~l~~-~G~d~i~v~~~~~~~~~~-~--p~~~~~v~~i-- 223 (306)
.+++|-.-+.. | -+++++.++++.... .|+|.|-+.=.+..+.|. + ..+++.+++|
T Consensus 153 ~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~ 232 (345)
T cd00946 153 INMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQD 232 (345)
T ss_pred cCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHH
Confidence 46666665543 1 122334444433322 388999876555555554 1 2578999998
Q ss_pred --HhhC------CCcEEEecCCCC-HHHHHHHHHhhh
Q psy4398 224 --TQHL------KIPVIANGGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 224 --~~~~------~ipvia~GGI~s-~~~~~~~l~~~v 251 (306)
++.+ ++|++..||-.. .++.+++++.|+
T Consensus 233 ~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI 269 (345)
T cd00946 233 YVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYGV 269 (345)
T ss_pred HHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCC
Confidence 5555 689999999765 467788888765
No 346
>TIGR03586 PseI pseudaminic acid synthase.
Probab=94.92 E-value=1 Score=42.03 Aligned_cols=82 Identities=9% Similarity=0.117 Sum_probs=60.0
Q ss_pred ccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCCcHHHHHHHHhh
Q psy4398 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI-IAIGVHGRTKAERPRHRNRIEMIRTLTQH 226 (306)
Q Consensus 148 ~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~-d~i~v~~~~~~~~~~~p~~~~~v~~i~~~ 226 (306)
+.-+++..++..+. + .+.||.+|... .+.+++...++.+.+.|. +.+.+|+.+.-+......++..+..+++.
T Consensus 118 S~~~~n~~LL~~va----~-~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~ 191 (327)
T TIGR03586 118 SFEITDLPLIRYVA----K-TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAER 191 (327)
T ss_pred CccccCHHHHHHHH----h-cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHH
Confidence 33445666655543 2 48999999887 478889999999999998 55667875433333334689999999999
Q ss_pred CCCcEEEec
Q psy4398 227 LKIPVIANG 235 (306)
Q Consensus 227 ~~ipvia~G 235 (306)
+++||..+.
T Consensus 192 f~~pVG~SD 200 (327)
T TIGR03586 192 FNVPVGLSD 200 (327)
T ss_pred hCCCEEeeC
Confidence 999996665
No 347
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.91 E-value=0.21 Score=45.58 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--CcEEEe
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--IPVIAN 234 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--ipvia~ 234 (306)
+.+-++.+|+.++....+-++. . ..+-++.+.+.|+|+|.+. +...+.++++.+..+ +|+.+.
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv----~-tleea~~A~~~gaDyI~lD----------~~~~e~l~~~~~~~~~~i~i~Ai 238 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVET----E-TEEQVREAVAAGADIIMFD----------NRTPDEIREFVKLVPSAIVTEAS 238 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEe----C-CHHHHHHHHHcCCCEEEEC----------CCCHHHHHHHHHhcCCCceEEEE
Confidence 4566677777765333344442 1 2344555567999999883 134577788777664 778899
Q ss_pred cCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 235 GGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
||| +.+++.++.+.|+ ++|..-+
T Consensus 239 GGI-t~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 239 GGI-TLENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred CCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 999 4999999998865 6666444
No 348
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.91 E-value=0.27 Score=42.79 Aligned_cols=73 Identities=26% Similarity=0.300 Sum_probs=60.6
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
|+..=+|. .+.++...+++.+.+.|++.|-|+-|+ |...+.++++++.+.--+|+.|=|-|+++++++.++|
T Consensus 14 ~vI~Vlr~-~~~e~a~~~a~Ali~gGi~~IEITl~s-------p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aG 85 (211)
T COG0800 14 PVVPVIRG-DDVEEALPLAKALIEGGIPAIEITLRT-------PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAG 85 (211)
T ss_pred CeeEEEEe-CCHHHHHHHHHHHHHcCCCeEEEecCC-------CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcC
Confidence 33333442 457899999999999999999997554 5678999999999987799999999999999999875
Q ss_pred h
Q psy4398 251 C 251 (306)
Q Consensus 251 v 251 (306)
.
T Consensus 86 a 86 (211)
T COG0800 86 A 86 (211)
T ss_pred C
Confidence 4
No 349
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=94.88 E-value=0.34 Score=50.48 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=48.6
Q ss_pred cCCcEEEEcccCCC---CCCCCCCcHHHHHHHHhhCC---CcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 195 CGIIAIGVHGRTKA---ERPRHRNRIEMIRTLTQHLK---IPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 195 ~G~d~i~v~~~~~~---~~~~~p~~~~~v~~i~~~~~---ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
+|+|++.+...... .....+..++.++++++.++ +||++-||| +.+++.++++. |+++-++++..
T Consensus 127 ~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 127 ALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred CCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 46999998764322 12223457889999998887 999999999 58999999887 45888887753
No 350
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=94.81 E-value=0.2 Score=46.85 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEE
Q psy4398 155 DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIA 233 (306)
Q Consensus 155 ~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia 233 (306)
+...+.++.+++. +.+-...+.+ ++..+.++.+.++|++.|.++.... .. +...++++++++.. ++||++
T Consensus 70 ~~~~~~i~~vk~~----l~v~~~~~~~-~~~~~~~~~l~eagv~~I~vd~~~G---~~-~~~~~~i~~ik~~~p~v~Vi~ 140 (325)
T cd00381 70 EEQAEEVRKVKGR----LLVGAAVGTR-EDDKERAEALVEAGVDVIVIDSAHG---HS-VYVIEMIKFIKKKYPNVDVIA 140 (325)
T ss_pred HHHHHHHHHhccC----ceEEEecCCC-hhHHHHHHHHHhcCCCEEEEECCCC---Cc-HHHHHHHHHHHHHCCCceEEE
Confidence 4445666666643 3333333333 4567788888889999998864321 11 22467889999887 488887
Q ss_pred ecCCCCHHHHHHHHHhhh
Q psy4398 234 NGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~v 251 (306)
|.+.|.++++++++.|+
T Consensus 141 -G~v~t~~~A~~l~~aGa 157 (325)
T cd00381 141 -GNVVTAEAARDLIDAGA 157 (325)
T ss_pred -CCCCCHHHHHHHHhcCC
Confidence 89999999999999865
No 351
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=94.74 E-value=1.6 Score=40.75 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=80.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc--cEEEEeccCC
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI--PVSCKIRVFH 180 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir~g~ 180 (306)
|+...+...++++..+.++.. .|+..+-+.++-+. .+++.-.+.++++++.++. .+.+-...+|
T Consensus 80 p~~~tv~~~~~e~~~~~~~~~-~G~~~~KvKVg~~~-------------~~~~~Di~rv~avRe~lGpd~~LrvDAN~~w 145 (327)
T PRK02901 80 PVNATVPAVDAAQVPEVLARF-PGCRTAKVKVAEPG-------------QTLADDVARVNAVRDALGPDGRVRVDANGGW 145 (327)
T ss_pred EeeEEeCCCCHHHHHHHHHHh-CCCCEEEEEECCCC-------------CCHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 444444444565544333322 48998888765221 2345556777888888753 3333333368
Q ss_pred ChHHHHHHHHHH-HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 181 NEADTIALCKRL-EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 181 ~~~~~~~~a~~l-~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+.+++.++++.+ ++.++.+|- ++. ..++-.+++++.+++||.+-=.+++..+...+++.
T Consensus 146 s~~~Ai~~~~~L~e~~~l~~iE-------qP~---~~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~ 205 (327)
T PRK02901 146 SVDEAVAAARALDADGPLEYVE-------QPC---ATVEELAELRRRVGVPIAADESIRRAEDPLRVARA 205 (327)
T ss_pred CHHHHHHHHHHhhhccCceEEe-------cCC---CCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc
Confidence 999999999999 677777764 222 13677788888888998776667888888887764
No 352
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=94.74 E-value=0.71 Score=47.42 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=85.6
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.|+|+|-|-... + ..+.+.++++..++ ++.-+.|-+. + .+-++.+.++|++.|-|..
T Consensus 132 ~GADavLLI~~~--------------L-~~~~l~~l~~~a~~-lGme~LvEvh---~----~~el~~a~~~ga~iiGINn 188 (695)
T PRK13802 132 HGADLVLLIVAA--------------L-DDAQLKHLLDLAHE-LGMTVLVETH---T----REEIERAIAAGAKVIGINA 188 (695)
T ss_pred cCCCEeehhHhh--------------c-CHHHHHHHHHHHHH-cCCeEEEEeC---C----HHHHHHHHhCCCCEEEEeC
Confidence 388998885432 1 24566777766544 6888888888 2 2334455668999999998
Q ss_pred cCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCchHHHHHHH
Q psy4398 205 RTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPKTILYAH 271 (306)
Q Consensus 205 ~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~~~l~~~ 271 (306)
|.....- .+++...++.+.+ ++.+|+-+||.+++|+..+.+.| +.||.++++.|.. ...++++
T Consensus 189 RdL~tf~---vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp-~~~~~~l 256 (695)
T PRK13802 189 RNLKDLK---VDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDH-ELAVERL 256 (695)
T ss_pred CCCccce---eCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCH-HHHHHHH
Confidence 8755432 3667777887777 67889999999999999998875 4999999987653 3334444
No 353
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.66 E-value=0.28 Score=45.02 Aligned_cols=88 Identities=9% Similarity=0.118 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHH-HHHHHHh-hCCCcEE
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIE-MIRTLTQ-HLKIPVI 232 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~-~v~~i~~-~~~ipvi 232 (306)
+.+.++.+|+.++ .+|.|-+. ..+-+..+.++|+|+|-+.... |..+. .+..+++ .-++|+.
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~-------tleea~eA~~~GaD~I~LDn~~-------~e~l~~av~~~~~~~~~i~le 247 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETE-------TLEQVQEALEYGADIIMLDNMP-------VDLMQQAVQLIRQQNPRVKIE 247 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECC-------CHHHHHHHHHcCCCEEEECCCC-------HHHHHHHHHHHHhcCCCeEEE
Confidence 4566777777664 23333333 2333444557999999987332 22222 2222322 2378999
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
++|||+ .+++.++.+.|+ ++|+....
T Consensus 248 AsGGIt-~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 248 ASGNIT-LETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred EECCCC-HHHHHHHHHcCCCEEEEchhhhC
Confidence 999995 999999988866 88877664
No 354
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=94.66 E-value=0.6 Score=46.11 Aligned_cols=128 Identities=9% Similarity=0.033 Sum_probs=70.6
Q ss_pred eEEEecCC-CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 104 IILQIGTA-DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 104 ~ivql~g~-~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
++.-|... ..+...+-|+ .+++|+|.|+||+++..+ .++.+..+++++++.++.||++-.. +
T Consensus 154 v~aEI~~a~~l~~i~~~A~~~~~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT~---~ 217 (499)
T TIGR00284 154 VVAEIPPTVAEDGIEGLAARMERDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADTP---T 217 (499)
T ss_pred EEEEEcCCcchHHHHHHHHHHHHCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeCC---C
Confidence 45555432 2344444444 456799999999876432 2446888899998877888877655 2
Q ss_pred hHHHHHHHHHHHHcCCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC--CCCHHHHHHHHHhhhhhcc-cc
Q psy4398 182 EADTIALCKRLEACGIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG--SKEIVDYGGVFSLNCAFLR-NH 257 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG--I~s~~~~~~~l~~~v~vGr-al 257 (306)
.+.++...++|+|.|. +++ .+++.+..+.+..+.|+|..=. -.+.+.+++.++.....|- .+
T Consensus 218 ----~~v~eaAL~aGAdiINsVs~----------~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~I 283 (499)
T TIGR00284 218 ----LDELYEALKAGASGVIMPDV----------ENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKV 283 (499)
T ss_pred ----HHHHHHHHHcCCCEEEECCc----------cchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcE
Confidence 3444555556888776 111 1222333444445666555432 1112334444443333333 45
Q ss_pred CCCC
Q psy4398 258 YPVE 261 (306)
Q Consensus 258 l~~p 261 (306)
+.||
T Consensus 284 IlDP 287 (499)
T TIGR00284 284 AADP 287 (499)
T ss_pred EEeC
Confidence 6677
No 355
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=94.65 E-value=1.3 Score=41.21 Aligned_cols=139 Identities=10% Similarity=0.133 Sum_probs=90.6
Q ss_pred HHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHH
Q psy4398 114 ERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 114 ~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~ 190 (306)
++..+.++.. +.||..+-+.+|- .+++.-.+.++++|+.++ ..+.+-...+|+.+++.++++
T Consensus 120 ~~~~~~a~~~~~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~ 184 (320)
T PRK02714 120 EAALQQWQTLWQQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQ 184 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4555444444 5699999886542 123444567788888774 445555555789999999999
Q ss_pred HHHH---cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCC-CchH
Q psy4398 191 RLEA---CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVE-KLPK 265 (306)
Q Consensus 191 ~l~~---~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p-~~~~ 265 (306)
.+++ .++.+|- ++. .+.+++-.+++++.+++||.+-=.+.+..++..+++.+. .+ +--+| ...-
T Consensus 185 ~l~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~---v~ik~~k~GG 253 (320)
T PRK02714 185 LCDRRLSGKIEFIE-------QPL-PPDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGI---FVIKPAIAGS 253 (320)
T ss_pred HHhhccCCCccEEE-------CCC-CcccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCE---EEEcchhcCC
Confidence 9988 4665553 222 234788889999999999988878889999998887532 10 11122 1111
Q ss_pred H-HHHHHHHhcCCC
Q psy4398 266 T-ILYAHCKYKRFE 278 (306)
Q Consensus 266 ~-~l~~~~~~~g~~ 278 (306)
+ .+.++.+..|++
T Consensus 254 i~~~~~~a~~~gi~ 267 (320)
T PRK02714 254 PSRLRQFCQQHPLD 267 (320)
T ss_pred HHHHHHHHHHhCCC
Confidence 1 455667777877
No 356
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=94.61 E-value=0.36 Score=46.33 Aligned_cols=136 Identities=10% Similarity=0.056 Sum_probs=89.5
Q ss_pred cCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEE
Q psy4398 125 HDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIG 201 (306)
Q Consensus 125 ~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~ 201 (306)
.||.++-+.++. |. .| ...++.-.+.++++|++++ +.+.+-...+|+.+++.++++.+++.++..+-
T Consensus 171 ~Gf~~~Kik~~~g~~-------~g---~~~~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wiE 240 (394)
T PRK15440 171 MGFIGGKMPLHHGPA-------DG---DAGLRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWIE 240 (394)
T ss_pred CCCCEEEEcCCcCcc-------cc---hHHHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCccee
Confidence 488888887531 21 01 0124555678888888884 56666666679999999999999999887773
Q ss_pred EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC--CCCHHHHHHHHHhhhhhccccCCCCCc-------hHHHHHHHH
Q psy4398 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG--SKEIVDYGGVFSLNCAFLRNHYPVEKL-------PKTILYAHC 272 (306)
Q Consensus 202 v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG--I~s~~~~~~~l~~~v~vGrall~~p~~-------~~~~l~~~~ 272 (306)
++. .+.+++-.+++++.+++||...+| +.+..+++.+++.+. .-+-+|.. .-+.+.+..
T Consensus 241 -------EPl-~~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a----~Divq~d~~~~GGit~~~kia~lA 308 (394)
T PRK15440 241 -------ECL-PPDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGC----IDIIQPDVGWCGGLTELVKIAALA 308 (394)
T ss_pred -------CCC-CcccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCC----CCEEeCCccccCCHHHHHHHHHHH
Confidence 222 345788889999998766555444 567888888887532 11222211 122666777
Q ss_pred HhcCCCCCcc
Q psy4398 273 KYKRFEVPKY 282 (306)
Q Consensus 273 ~~~g~~~~~~ 282 (306)
+.+|++...+
T Consensus 309 ~a~gi~~~pH 318 (394)
T PRK15440 309 KARGQLVVPH 318 (394)
T ss_pred HHcCCeeccc
Confidence 8888775443
No 357
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=94.58 E-value=0.037 Score=48.90 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccc
Q psy4398 181 NEADTIALCKRLEA-CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRN 256 (306)
Q Consensus 181 ~~~~~~~~a~~l~~-~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGra 256 (306)
+.++....+...++ .|...+-+-..+. .+. +..-++++..++..++|+|..|||+|.++++++.++|+ .+|.+
T Consensus 137 ~~~~iaa~~alA~~~~g~~~iYLEaGSG--a~~-~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~ 213 (230)
T PF01884_consen 137 DKPEIAAAAALAAEYLGMPIIYLEAGSG--AYG-PVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNA 213 (230)
T ss_dssp SHHHHHHHHHHHHHHTT-SEEEEE--TT--SSS--HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCH
T ss_pred CcHHHHHHHHHHHHHhCCCEEEEEeCCC--CCC-CccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCE
Confidence 44455444444444 5888887754322 222 22234445555555999999999999999999999865 99999
Q ss_pred cCCCCC
Q psy4398 257 HYPVEK 262 (306)
Q Consensus 257 ll~~p~ 262 (306)
++.|+.
T Consensus 214 iee~~~ 219 (230)
T PF01884_consen 214 IEEDPD 219 (230)
T ss_dssp HHHHH-
T ss_pred EEEcch
Confidence 988764
No 358
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=94.58 E-value=1.3 Score=41.27 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=92.1
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g 179 (306)
.|+-.++...+++++.+.++.. +.||..+-+..+ |. .+ .+.++++|+.++ +.+.+-...+
T Consensus 122 i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~~-------------~d----~~~v~~vr~~~~~~~l~vDaN~~ 183 (324)
T TIGR01928 122 APAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT-PQ-------------IM----HQLVKLRRLRFPQIPLVIDANES 183 (324)
T ss_pred EEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC-Cc-------------hh----HHHHHHHHHhCCCCcEEEECCCC
Confidence 3444445556777776666654 459999998753 10 12 356777887762 2233333335
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccC
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHY 258 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall 258 (306)
|+.++. ..++.+++.++.++- ++. .+.+++-.+++++.+++||.+.=.+.+..++..+++.+. -+ +-
T Consensus 184 ~~~~~a-~~~~~l~~~~~~~iE-------eP~-~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dv---i~ 251 (324)
T TIGR01928 184 YDLQDF-PRLKELDRYQLLYIE-------EPF-KIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKV---IN 251 (324)
T ss_pred CCHHHH-HHHHHHhhCCCcEEE-------CCC-ChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCE---EE
Confidence 777664 568999998877764 222 234678889999999999988777888999888877532 10 00
Q ss_pred CCC-C----chHHHHHHHHHhcCCCC
Q psy4398 259 PVE-K----LPKTILYAHCKYKRFEV 279 (306)
Q Consensus 259 ~~p-~----~~~~~l~~~~~~~g~~~ 279 (306)
-++ . ..-..+.+..++.|+++
T Consensus 252 ~d~~~~GGit~~~~~~~~A~~~gi~~ 277 (324)
T TIGR01928 252 IKPGRLGGLTEVQKAIETCREHGAKV 277 (324)
T ss_pred eCcchhcCHHHHHHHHHHHHHcCCeE
Confidence 122 1 11125566677778773
No 359
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=94.56 E-value=0.44 Score=44.64 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=64.6
Q ss_pred cccCChHHHHHHHHHHHh-cccccEEEEeccCCCh-HHHHHHHHHHHHcCCcEEEEcccCCC--CCCCCCCcH----HHH
Q psy4398 149 ALLSTPDIACNILTTLIS-NLSIPVSCKIRVFHNE-ADTIALCKRLEACGIIAIGVHGRTKA--ERPRHRNRI----EMI 220 (306)
Q Consensus 149 ~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~g~~~-~~~~~~a~~l~~~G~d~i~v~~~~~~--~~~~~p~~~----~~v 220 (306)
....+++...+. +.+|+ ..+.|+.+-+...... .+..++.+..+..++|++.+|-.... ..+.+..++ +.+
T Consensus 93 ~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i 171 (333)
T TIGR02151 93 AALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKI 171 (333)
T ss_pred hhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHH
Confidence 345678866666 77777 5689999877642111 11444555555567778777643211 112222233 678
Q ss_pred HHHHhhCCCcEEE--ecCCCCHHHHHHHHHhhh
Q psy4398 221 RTLTQHLKIPVIA--NGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 221 ~~i~~~~~ipvia--~GGI~s~~~~~~~l~~~v 251 (306)
+.+++.+++||+. +|.-.+.+.++.+.+.|+
T Consensus 172 ~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGv 204 (333)
T TIGR02151 172 AEICSQLSVPVIVKEVGFGISKEVAKLLADAGV 204 (333)
T ss_pred HHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCC
Confidence 9999999999997 455578888888888765
No 360
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=94.56 E-value=3.2 Score=38.68 Aligned_cols=167 Identities=13% Similarity=0.134 Sum_probs=103.4
Q ss_pred ccccccccc--CCceEEccCCCCCC--HH--HHHH--HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 21 NANQANINY--SNKIILAPMVRMNT--LP--FRLL--ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 21 ~~~~~~l~l--~n~i~lAPm~~~t~--~~--~r~~--~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
++++|++.+ .||+..=+|+...+ .. .+++ ..+.||.++=.-.-..+.. ....
T Consensus 6 ~V~VG~v~IGG~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A-~al~------------------- 65 (346)
T TIGR00612 6 SVRVGAVPVGGDAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESA-AAFE------------------- 65 (346)
T ss_pred EEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHH-HhHH-------------------
Confidence 355677665 79999999994322 11 3332 2478988874432111110 0000
Q ss_pred eeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
...+....|++.-|.-. +..|+..++.|+|.|-||=| ++|. .+.+.+++++.++. ++|+
T Consensus 66 --~I~~~~~iPlVADIHFd----~~lAl~a~~~g~dkiRINPG---------Nig~-----~e~v~~vv~~ak~~-~ipI 124 (346)
T TIGR00612 66 --AIKEGTNVPLVADIHFD----YRLAALAMAKGVAKVRINPG---------NIGF-----RERVRDVVEKARDH-GKAM 124 (346)
T ss_pred --HHHhCCCCCEEEeeCCC----cHHHHHHHHhccCeEEECCC---------CCCC-----HHHHHHHHHHHHHC-CCCE
Confidence 00112357899888433 45566666779999999833 3442 67888899888775 7787
Q ss_pred EEEeccC------------CCh----HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE
Q psy4398 173 SCKIRVF------------HNE----ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI 232 (306)
Q Consensus 173 ~vKir~g------------~~~----~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi 232 (306)
-+.+..| ++. +.+.+.++.|++.|.+-|.++-...+- +..++..+.+++.++.|+-
T Consensus 125 RIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsSdv----~~~i~ayr~la~~~dyPLH 196 (346)
T TIGR00612 125 RIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKASDV----AETVAAYRLLAERSDYPLH 196 (346)
T ss_pred EEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCH----HHHHHHHHHHHhhCCCCce
Confidence 7766643 222 346788999999999999987643321 2245556777777777753
No 361
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=94.53 E-value=0.33 Score=44.03 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEE
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVI 232 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvi 232 (306)
..+-++.+|+.++ .++-+-+. ..+-++.+.+.|+|+|.+... ..+.++++.+.+ .+|+.
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~-------t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~ 226 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVE-------SLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLE 226 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeC-------CHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEE
Confidence 3445677777664 33333333 234456667899999998542 335666666655 38999
Q ss_pred EecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
+.|||+ .+++.++.+.|+ ++|.
T Consensus 227 AsGGI~-~~ni~~~a~~Gvd~Isvga 251 (265)
T TIGR00078 227 ASGGIT-LDNLEEYAETGVDVISSGA 251 (265)
T ss_pred EECCCC-HHHHHHHHHcCCCEEEeCH
Confidence 999995 899999998865 6643
No 362
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=94.53 E-value=1.7 Score=38.99 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=65.9
Q ss_pred ceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc--
Q psy4398 103 KIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV-- 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~-- 178 (306)
.+++.|.+.+.+++.+.++.+. .++|.||+ |-|-+.. ..+.+.+.+++..+++.. ++|+++=+|.
T Consensus 17 ~i~v~l~~~~~~e~~~~~~~~~~~~aD~vEl---------RlD~l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~ 85 (253)
T PRK02412 17 KIIVPIMGKTLEEVLAEALAISKYDADIIEW---------RADFLEK--ISDVESVLAAAPAIREKFAGKPLLFTFRTAK 85 (253)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhhcCCCEEEE---------Eechhhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 4778899999999888777665 59999999 4343321 134566777788887765 6899998886
Q ss_pred --C---CChHHHHHHHHHHHHcC-CcEEEEc
Q psy4398 179 --F---HNEADTIALCKRLEACG-IIAIGVH 203 (306)
Q Consensus 179 --g---~~~~~~~~~a~~l~~~G-~d~i~v~ 203 (306)
| .+.++-.++.+.+.+.| +|+|.+.
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiE 116 (253)
T PRK02412 86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVE 116 (253)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 1 23455677778888888 8999985
No 363
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=94.49 E-value=1.8 Score=42.70 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=108.8
Q ss_pred ccccccccccCCceEEccCCCCCC-HHHHHHHHHcCC------CEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNT-LPFRLLALDYGA------DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~-~~~r~~~~~~G~------g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
+.+++.-++-..||++|-|+..|- ..+...+.++|. |.-+||-+ +.....+..++ +.||
T Consensus 24 v~TkfsrLtGr~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~----~~~~i~ql~~~------lepG---- 89 (717)
T COG4981 24 VSTKFSRLTGRSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEI----FTNAIEQLVSL------LEPG---- 89 (717)
T ss_pred EeechhhhcCCCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHH----HHHHHHHHHhc------cCCC----
Confidence 567888888899999999996554 446665556551 33344322 21111111111 1121
Q ss_pred eeecCCCCCCceEEEecCCCHHHH------HHHHHHHhc-C--CCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 93 VFRTCPREKNKIILQIGTADPERA------LEAAKKVEH-D--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~------~~aa~~~~~-g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
.-.-+|..--+|--| ....+.+.+ | .|+|-|..|.|. .+...|+|+.
T Consensus 90 ---------~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~---------------le~A~ElI~~ 145 (717)
T COG4981 90 ---------RTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPS---------------LEEAVELIEE 145 (717)
T ss_pred ---------ccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCc---------------HHHHHHHHHH
Confidence 111122111121110 112233433 5 589999888876 3556677766
Q ss_pred HHhcccccEE-EEeccCCChHHHHHHHHHHHHcCCcEEE--EcccCCCCCCC----CCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 164 LISNLSIPVS-CKIRVFHNEADTIALCKRLEACGIIAIG--VHGRTKAERPR----HRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 164 v~~~~~~pv~-vKir~g~~~~~~~~~a~~l~~~G~d~i~--v~~~~~~~~~~----~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
+-. .++|-. .|-. +.+......+.+.+..---|+ +.+....+..+ ...-+....+++.+-+|-+|..||
T Consensus 146 L~~-~G~~yv~fKPG---tIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGgG 221 (717)
T COG4981 146 LGD-DGFPYVAFKPG---TIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGG 221 (717)
T ss_pred Hhh-cCceeEEecCC---cHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEEecCC
Confidence 633 356633 3322 444455555555555433344 44443333222 112345567888888999999999
Q ss_pred CCCHHHHHHHHH------h--------hhhhccccCC
Q psy4398 237 SKEIVDYGGVFS------L--------NCAFLRNHYP 259 (306)
Q Consensus 237 I~s~~~~~~~l~------~--------~v~vGrall~ 259 (306)
|.+++++...+. + |+.+|++.+.
T Consensus 222 iGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMa 258 (717)
T COG4981 222 IGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMA 258 (717)
T ss_pred cCChhhcccccccchhhhcCCCCCCcceeEechhHHh
Confidence 999999987774 1 4478887765
No 364
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=94.46 E-value=0.16 Score=43.57 Aligned_cols=93 Identities=12% Similarity=0.027 Sum_probs=68.7
Q ss_pred ccccEEEEecc--CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 168 LSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 168 ~~~pv~vKir~--g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
+...+.+|-.. +++.++..+..+.+....--.+++-+...-+..++| +.+.+..+.+....||+..|||.-.|+.+-
T Consensus 120 ~vvslD~k~~~Ll~~~~ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~G~-~~E~l~~~~~~s~~pVllGGGV~g~Edlel 198 (229)
T COG1411 120 IVVSLDVKGGELLGPWLEDFLETVKDLNYRRDPGLIVLDIGAVGTKSGP-DYELLTKVLELSEHPVLLGGGVGGMEDLEL 198 (229)
T ss_pred eEEEEecCCCeecCCCchhHHHHHHHHhccCCCCeEEEEccccccccCC-CHHHHHHHHHhccCceeecCCcCcHHHHHH
Confidence 45667777553 455788888888877654444444333334445555 889999999998999999999999999998
Q ss_pred HHHhhh---hhccccCCCC
Q psy4398 246 VFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 246 ~l~~~v---~vGrall~~p 261 (306)
....|+ .+|||++.+-
T Consensus 199 ~~~~Gv~gvLvaTalh~G~ 217 (229)
T COG1411 199 LLGMGVSGVLVATALHEGV 217 (229)
T ss_pred HhcCCCceeeehhhhhcCc
Confidence 887754 9999999764
No 365
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.43 E-value=0.79 Score=43.20 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=78.2
Q ss_pred ecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEE
Q psy4398 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC 174 (306)
Q Consensus 95 ~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v 174 (306)
+...+.|.+++-.++... +...+++ .+|.+.| |+..+++..++ +++. ..+.||.+
T Consensus 159 ~~~~e~Gl~~~tev~d~~--~v~~~~~----~~d~lqI--------------ga~~~~n~~LL----~~va-~t~kPVll 213 (352)
T PRK13396 159 AAREATGLGIITEVMDAA--DLEKIAE----VADVIQV--------------GARNMQNFSLL----KKVG-AQDKPVLL 213 (352)
T ss_pred HHHHHcCCcEEEeeCCHH--HHHHHHh----hCCeEEE--------------CcccccCHHHH----HHHH-ccCCeEEE
Confidence 334456777777764332 2222222 3688877 45556676654 4443 35899999
Q ss_pred EeccCCChHHHHHHHHHHHHcCCcEEE-EcccC--CCCCC-CCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 175 KIRVFHNEADTIALCKRLEACGIIAIG-VHGRT--KAERP-RHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 175 Kir~g~~~~~~~~~a~~l~~~G~d~i~-v~~~~--~~~~~-~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
|-....+.+++...++.+.+.|..-|. ++... -...| ....+|..+..+++.+++|||..
T Consensus 214 k~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~D 277 (352)
T PRK13396 214 KRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMID 277 (352)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEEC
Confidence 999888899999999999999986555 45533 22122 24568999999999999999776
No 366
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.34 E-value=0.62 Score=42.24 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=76.7
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+.|.|++--+. ++.+... +.+.+|.++| |+.++++.++ ++++.+ ++.||.+|-.
T Consensus 84 ~~~GlpvvTeV~--~~~~~~~----~ae~vDilQI--------------gAr~~rntdL----L~a~~~-t~kpV~lKrG 138 (281)
T PRK12457 84 ARFGVPVITDVH--EVEQAAP----VAEVADVLQV--------------PAFLARQTDL----VVAIAK-TGKPVNIKKP 138 (281)
T ss_pred HHHCCceEEEeC--CHHHHHH----HhhhCeEEee--------------CchhhchHHH----HHHHhc-cCCeEEecCC
Confidence 346777776662 2323332 2335888888 4555666554 444433 5899999998
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCC-CCCcHHHHHHHHhh-CCCcEEE
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR-HRNRIEMIRTLTQH-LKIPVIA 233 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~-~p~~~~~v~~i~~~-~~ipvia 233 (306)
.+.+++++...++.+.+.|...|.+.-|-..-.|. ...++..+..+++. .++|||.
T Consensus 139 qf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~t~lPVi~ 196 (281)
T PRK12457 139 QFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTTGDLPVIF 196 (281)
T ss_pred CcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhCCCCCEEE
Confidence 77788899999999999999999886554332333 24577788888886 5899986
No 367
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.32 E-value=0.33 Score=44.12 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=56.6
Q ss_pred HHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEE
Q psy4398 158 CNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIA 233 (306)
Q Consensus 158 ~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia 233 (306)
.+-++.+|+.++ .++.|-+. + .+-++.+.++|+|+|.+... ..+.++++.+.. ++|+.+
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev~---s----~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~A 231 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVE---T----LEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEA 231 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEEC---C----HHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEE
Confidence 345667777664 23333333 2 34455556799999998643 346777777666 599999
Q ss_pred ecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 234 NGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.|||+ .+++.++.+.|+ ++|+...
T Consensus 232 iGGI~-~~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 232 SGGIT-LENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred ECCCC-HHHHHHHHHcCCCEEEEEeeec
Confidence 99995 899999998765 7776544
No 368
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.31 E-value=3.1 Score=36.23 Aligned_cols=108 Identities=11% Similarity=0.153 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHH
Q psy4398 110 TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~ 187 (306)
..++++..+ .++. +.|.|+||-. .++++ ++.+++.. ..+++--++. +.. ...
T Consensus 61 ~~~~~~i~~---~~~~~~~d~vQLHG~----------------e~~~~----~~~l~~~~~~~~iika~~~--~~~-~~~ 114 (207)
T PRK13958 61 NPDLTTIEH---ILSNTSINTIQLHGT----------------ESIDF----IQEIKKKYSSIKIIKALPA--DEN-IIQ 114 (207)
T ss_pred CCCHHHHHH---HHHhCCCCEEEECCC----------------CCHHH----HHHHhhcCCCceEEEEecc--cHH-HHH
Confidence 345555554 4443 7899999822 12333 44555433 3555555553 222 223
Q ss_pred HHHHHHHcCCcEEEEcccCCC-CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKA-ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~-~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
.++.... .+|++.+...... ++.....+|+.++.+ ...|++..||++ +++..++++
T Consensus 115 ~~~~~~~-~~d~~LlDs~~~~~GGtG~~~dw~~~~~~---~~~p~iLAGGL~-peNV~~a~~ 171 (207)
T PRK13958 115 NINKYKG-FVDLFIIDTPSVSYGGTGQTYDWTILKHI---KDIPYLIAGGIN-SENIQTVEQ 171 (207)
T ss_pred HHHHHHh-hCCEEEEcCCCCCCCcCCcEeChHHhhhc---cCCCEEEECCCC-HHHHHHHHh
Confidence 3333333 4899988763211 112224578888765 356999999986 777777654
No 369
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.28 E-value=0.23 Score=49.13 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
+..+.++.+.++|+|.|+++... ... +..++.++++++.+ ++||++ |.|.|.+++++++++|+
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~---G~s-~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGa 304 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQ---GNS-IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGA 304 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCC---CCc-hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCC
Confidence 34888999999999999986532 111 23478999999997 678777 89999999999999876
No 370
>KOG2334|consensus
Probab=94.25 E-value=0.033 Score=52.82 Aligned_cols=110 Identities=30% Similarity=0.457 Sum_probs=80.4
Q ss_pred EEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC
Q psy4398 130 IDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209 (306)
Q Consensus 130 veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~ 209 (306)
.++|.+||........-+......+..+..+.+..+...+.|+ .|.|.-.++.+..++++.+++.+ .+.++++..-.
T Consensus 290 ~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f~ 366 (477)
T KOG2334|consen 290 RGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIFD 366 (477)
T ss_pred hhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhccccc
Confidence 4556778886555555555555566666777777777777787 78887667788999999999998 44456655444
Q ss_pred CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHH
Q psy4398 210 RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242 (306)
Q Consensus 210 ~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~ 242 (306)
+...|..|+..+.+.....+|++++|-+.+..+
T Consensus 367 r~~~pa~~~~~k~~l~~~~~~~~~~~~~ye~~~ 399 (477)
T KOG2334|consen 367 RPTDPAKWDTPKMVLADLCVKTKANGPVYETVQ 399 (477)
T ss_pred ccCCCcCCCCHHHHHHHhhhhhcCCCcchhhhh
Confidence 445567788888777778899999999877666
No 371
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=94.24 E-value=0.46 Score=41.71 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=75.6
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C---CChHH---HHHHHHHHHHcC
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F---HNEAD---TIALCKRLEACG 196 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g---~~~~~---~~~~a~~l~~~G 196 (306)
.|+|.||| |.++..--.+..|| +++.+++...+|+.+-+|+ | .+..+ ..+=.+.+.++|
T Consensus 20 ~GAdRiEL-C~~La~GG~TPSyG------------~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG 86 (241)
T COG3142 20 AGADRIEL-CDALAEGGLTPSYG------------VIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELG 86 (241)
T ss_pred cCCceeeh-hhccccCCCCCCHH------------HHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcC
Confidence 49999999 54433211112233 4555666678999988886 2 12233 455567778899
Q ss_pred CcEEEEcccCCCCCC-----------CC-------------CCcHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHhhh
Q psy4398 197 IIAIGVHGRTKAERP-----------RH-------------RNRIEMIRTLTQHLKI-PVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 197 ~d~i~v~~~~~~~~~-----------~~-------------p~~~~~v~~i~~~~~i-pvia~GGI~s~~~~~~~l~~~v 251 (306)
+++|++-+-+.++.. .+ +.-.+.+.++.+. ++ .|..+||-.|..+..+.++.++
T Consensus 87 ~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~-Gv~RILTsGg~~sa~eg~~~l~~li 165 (241)
T COG3142 87 VQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIEL-GVERILTSGGKASALEGLDLLKRLI 165 (241)
T ss_pred CCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHC-CCcEEecCCCcCchhhhHHHHHHHH
Confidence 999997655433221 00 1012233333322 44 4788899888777777776655
Q ss_pred --hhcccc-CCCCCchHHHHHHHHHhcC
Q psy4398 252 --AFLRNH-YPVEKLPKTILYAHCKYKR 276 (306)
Q Consensus 252 --~vGral-l~~p~~~~~~l~~~~~~~g 276 (306)
.=||-. +.+--.....+..+.+..|
T Consensus 166 ~~a~gri~Im~GaGV~~~N~~~l~~~tg 193 (241)
T COG3142 166 EQAKGRIIIMAGAGVRAENIAELVLLTG 193 (241)
T ss_pred HHhcCCEEEEeCCCCCHHHHHHHHHhcC
Confidence 224432 3333222224445545555
No 372
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=94.20 E-value=0.46 Score=44.92 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=66.8
Q ss_pred cccCChHHHHHHHHHHHhcc-cccEEEEeccCCC-hHHHHHHHHHHHHcCCcEEEEcccCCCC--CCCCCCcH----HHH
Q psy4398 149 ALLSTPDIACNILTTLISNL-SIPVSCKIRVFHN-EADTIALCKRLEACGIIAIGVHGRTKAE--RPRHRNRI----EMI 220 (306)
Q Consensus 149 ~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~-~~~~~~~a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~----~~v 220 (306)
....+|+ +.+-++.+|+.. +.|+.+-+..... .-+..++.+.++..++|++.+|-..... .+.++.++ +.+
T Consensus 100 ~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i 178 (352)
T PRK05437 100 AALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNI 178 (352)
T ss_pred hhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHH
Confidence 3456777 777788888876 7888887765211 1123445556666678888887432111 12222234 678
Q ss_pred HHHHhhCCCcEEE--ecCCCCHHHHHHHHHhhh
Q psy4398 221 RTLTQHLKIPVIA--NGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 221 ~~i~~~~~ipvia--~GGI~s~~~~~~~l~~~v 251 (306)
+.+++.+++||+. +|.-.+.++++.+.+.|+
T Consensus 179 ~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gv 211 (352)
T PRK05437 179 AEIVSALPVPVIVKEVGFGISKETAKRLADAGV 211 (352)
T ss_pred HHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCC
Confidence 8899988999997 555577899988888765
No 373
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=94.17 E-value=1 Score=40.25 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=68.1
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCC--ChHHHHHHHHHHHHc
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFH--NEADTIALCKRLEAC 195 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~--~~~~~~~~a~~l~~~ 195 (306)
|+.+++ |+|.|-+-=+... ...+|=....-..+.....+++|++.+. .||++-+-.|. +.++..+.++.+.++
T Consensus 25 A~i~e~aG~dai~v~~s~~a---~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~a 101 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGM---TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRA 101 (240)
T ss_pred HHHHHHcCCCEEEEChHHHH---HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHc
Confidence 455554 9999887321111 0011111111245667777888887775 79999998763 346788999999999
Q ss_pred CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC
Q psy4398 196 GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 196 G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI 237 (306)
|+++|++-+.. ...+.++.++++ .+||++--|.
T Consensus 102 Ga~gv~iED~~--------~~~~~i~ai~~a-~i~ViaRtd~ 134 (240)
T cd06556 102 GAAGVKIEGGE--------WHIETLQMLTAA-AVPVIAHTGL 134 (240)
T ss_pred CCcEEEEcCcH--------HHHHHHHHHHHc-CCeEEEEeCC
Confidence 99999997631 123445566554 4899988775
No 374
>PLN02979 glycolate oxidase
Probab=94.13 E-value=0.7 Score=43.68 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=57.6
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc-------cCCC---------------------------------
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG-------RTKA--------------------------------- 208 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~-------~~~~--------------------------------- 208 (306)
+.+.+.++....|.+.+.++.++++++|+.+|.++- |.++
T Consensus 120 ~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (366)
T PLN02979 120 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 199 (366)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHH
Confidence 346777777545556677888888888888877631 1000
Q ss_pred ----CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 209 ----ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 209 ----~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
..+.++..|+.++.+++..++|||. .||.+.+|++.+.+.|+
T Consensus 200 ~~~~~~~~~~ltW~dl~wlr~~~~~Pviv-KgV~~~~dA~~a~~~Gv 245 (366)
T PLN02979 200 SYVAGQIDRTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQAGA 245 (366)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHhcCC
Confidence 0011235789999999999999875 56788999999999866
No 375
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.10 E-value=1.6 Score=40.03 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=49.1
Q ss_pred HHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC--C---CC-CCC-CcHHHHHHHHhhCCCcEEE
Q psy4398 161 LTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA--E---RP-RHR-NRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 161 v~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~--~---~~-~~p-~~~~~v~~i~~~~~ipvia 233 (306)
+...++..+.|+.+-+.. .+.++..+.|+.++++|+|+|.++-..+. . .+ ..| ...+.++.+++.+++||+.
T Consensus 81 ~~~~~~~~~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v 159 (296)
T cd04740 81 LLPWLREFGTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV 159 (296)
T ss_pred HHHHhhcCCCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence 333444457888888863 46788999999999999999998643221 1 11 111 1246778888888999885
No 376
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.08 E-value=0.52 Score=43.01 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.+-++.+.++|+|+|.+.. ...+.++++.+.. ++|+.++|||+ .+++.++.+.|+ ++|....
T Consensus 199 leea~eA~~~gaD~I~LD~----------~~~e~l~~~v~~~~~~i~leAsGGIt-~~ni~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 199 LDELRQALAAGADIVMLDE----------LSLDDMREAVRLTAGRAKLEASGGIN-ESTLRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCcEEEECCCC-HHHHHHHHHcCCCEEEEChhhc
Confidence 4445556689999998742 2446667666665 79999999995 999999998876 6665433
No 377
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.07 E-value=0.18 Score=47.41 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=50.7
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+.|...+|.. ++..+.++.|.++|+|.|+++.... +. ..-.+.++.+++.+. +||| .|+|-|.+.++++++.
T Consensus 96 ~l~V~aavg~~-~~~~er~~~L~~agvD~ivID~a~g---~s-~~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~a 169 (352)
T PF00478_consen 96 RLLVAAAVGTR-DDDFERAEALVEAGVDVIVIDSAHG---HS-EHVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDA 169 (352)
T ss_dssp CBCEEEEEESS-TCHHHHHHHHHHTT-SEEEEE-SST---TS-HHHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHT
T ss_pred cceEEEEecCC-HHHHHHHHHHHHcCCCEEEccccCc---cH-HHHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHc
Confidence 44444444444 3357778888889999999964321 11 123578899999994 8888 5779999999999998
Q ss_pred hh
Q psy4398 250 NC 251 (306)
Q Consensus 250 ~v 251 (306)
|+
T Consensus 170 Ga 171 (352)
T PF00478_consen 170 GA 171 (352)
T ss_dssp T-
T ss_pred CC
Confidence 65
No 378
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=93.98 E-value=0.83 Score=41.22 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=61.3
Q ss_pred CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~ 190 (306)
+.+...+-|. .+++|+|.||++..+.++... +-.-....+.+..+++.+++.++.||++-.. -.+.++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~----~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~-------~~~v~e 90 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGAD----PVSVEEELERVIPVLEALRGELDVLISVDTF-------RAEVAR 90 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC----CCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC-------CHHHHH
Confidence 4455555454 446799999999765443211 1112234456777888888877888877655 245555
Q ss_pred HHHHcCCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 191 RLEACGIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 191 ~l~~~G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
.+.++|++.|. +++.. .+ +.+..+.+..++++|+.
T Consensus 91 ~al~~G~~iINdisg~~--------~~-~~~~~l~~~~~~~vV~m 126 (257)
T cd00739 91 AALEAGADIINDVSGGS--------DD-PAMLEVAAEYGAPLVLM 126 (257)
T ss_pred HHHHhCCCEEEeCCCCC--------CC-hHHHHHHHHcCCCEEEE
Confidence 66667998887 44431 11 22333444557787775
No 379
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.97 E-value=1.2 Score=40.40 Aligned_cols=116 Identities=8% Similarity=0.105 Sum_probs=75.4
Q ss_pred eeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
+.+.+++.|.|++..++....-++ +.+-+|.+.| |+...++..++.++ ...+.||
T Consensus 83 l~~~~~~~Gl~~~te~~d~~~~~~------l~~~vd~~kI--------------ga~~~~n~~LL~~~-----a~~gkPV 137 (266)
T PRK13398 83 LKEVGDKYNLPVVTEVMDTRDVEE------VADYADMLQI--------------GSRNMQNFELLKEV-----GKTKKPI 137 (266)
T ss_pred HHHHHHHcCCCEEEeeCChhhHHH------HHHhCCEEEE--------------CcccccCHHHHHHH-----hcCCCcE
Confidence 334445567788777754332111 1112466666 45555665554444 3568999
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEE-EcccCCC-CCCC-CCCcHHHHHHHHhhCCCcEEE
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIG-VHGRTKA-ERPR-HRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~-v~~~~~~-~~~~-~p~~~~~v~~i~~~~~ipvia 233 (306)
.+|-....+.+++...++.+...|..-++ ++...+. ..|. ...++..+..+++.+++||+.
T Consensus 138 ~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~ 201 (266)
T PRK13398 138 LLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIV 201 (266)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEE
Confidence 99999877889999999999999986555 4443221 1232 234677888999888999998
No 380
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=93.86 E-value=0.48 Score=43.06 Aligned_cols=84 Identities=8% Similarity=0.056 Sum_probs=52.6
Q ss_pred HHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC----CCcEE
Q psy4398 159 NILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL----KIPVI 232 (306)
Q Consensus 159 eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~----~ipvi 232 (306)
+-++.+|+..+ .++.+-+. + . +-+..+.++|+|+|.+.... .+.++++.+.+ ++||.
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~---t---~-eea~~A~~~gaD~I~ld~~~----------~e~l~~~v~~i~~~~~i~i~ 231 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVE---T---L-EEAEEALEAGADIIMLDNMS----------PEELKEAVKLLKGLPRVLLE 231 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecC---C---H-HHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhccCCCeEEE
Confidence 45677777664 33333333 2 2 33344456899999986432 24444444444 78999
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+.|||+ ++++.++.+.|+ ++|...++-
T Consensus 232 asGGIt-~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 232 ASGGIT-LENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred EECCCC-HHHHHHHHHcCCCEEEEcHHHcCC
Confidence 999987 888999888765 665544443
No 381
>PLN02535 glycolate oxidase
Probab=93.85 E-value=0.68 Score=43.91 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=56.7
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC-------CCC--------------------------------
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT-------KAE-------------------------------- 209 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~-------~~~-------------------------------- 209 (306)
+-+.+..+....|-+.+.+++++++++|+.+|.++--+ ++.
T Consensus 123 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (364)
T PLN02535 123 NAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFA 202 (364)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHH
Confidence 44677777754455557777777777787777763110 000
Q ss_pred --CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 210 --RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 210 --~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
......+|+.++.+++..+.||| +.||.+.++++.+++.|+
T Consensus 203 ~~~~~~~~tW~~i~~lr~~~~~Pvi-vKgV~~~~dA~~a~~~Gv 245 (364)
T PLN02535 203 SETFDASLSWKDIEWLRSITNLPIL-IKGVLTREDAIKAVEVGV 245 (364)
T ss_pred HhccCCCCCHHHHHHHHhccCCCEE-EecCCCHHHHHHHHhcCC
Confidence 01223579999999999999987 466899999999998865
No 382
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=93.84 E-value=1.4 Score=39.11 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc-c-ccc-EEEEecc---CCChHHHH
Q psy4398 114 ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN-L-SIP-VSCKIRV---FHNEADTI 186 (306)
Q Consensus 114 ~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~-~~p-v~vKir~---g~~~~~~~ 186 (306)
..|.+..+.+++ ||+.|||+-|. +.-..+...++|+.+++. . ..| +-.|-.. ..+.++.+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~-------------~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i 137 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGS-------------MEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRI 137 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCc-------------cCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHH
Confidence 456667777776 99999998543 222345556677777643 1 011 1112110 13456678
Q ss_pred HHHHHHHHcCCcEEEEcccCCCC---CC--CCCCcHHHHHHHHhhCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAE---RP--RHRNRIEMIRTLTQHLK 228 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~---~~--~~p~~~~~v~~i~~~~~ 228 (306)
+.++...++||+.|.+-+|.... -+ .+....+.+.+|.+.++
T Consensus 138 ~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~ 184 (237)
T TIGR03849 138 KLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVD 184 (237)
T ss_pred HHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCC
Confidence 88888899999999999886532 23 23456678888887763
No 383
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=93.83 E-value=0.8 Score=41.43 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=58.4
Q ss_pred CCHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+.+...+-|+ .+++|+|.||+|++.+. .+.++.+..+++.+++.++.|+++-.. + .+.+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~------------~eE~~r~~~~v~~l~~~~~~plsIDT~---~----~~v~ 82 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAV------------EEEPETMEWLVETVQEVVDVPLCIDSP---N----PAAI 82 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCc------------hhHHHHHHHHHHHHHHhCCCCEEEeCC---C----HHHH
Confidence 34455555555 44569999999987421 234677888999998888899877666 2 2334
Q ss_pred HHHHHc--CCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 190 KRLEAC--GIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 190 ~~l~~~--G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
+...++ |++.|. +++.. ...+.+..+.+..++|+|+
T Consensus 83 eaaL~~~~G~~iINsIs~~~--------~~~~~~~~l~~~~g~~vv~ 121 (261)
T PRK07535 83 EAGLKVAKGPPLINSVSAEG--------EKLEVVLPLVKKYNAPVVA 121 (261)
T ss_pred HHHHHhCCCCCEEEeCCCCC--------ccCHHHHHHHHHhCCCEEE
Confidence 444444 888765 33211 0123334455556788775
No 384
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.81 E-value=1.8 Score=39.49 Aligned_cols=200 Identities=17% Similarity=0.140 Sum_probs=104.1
Q ss_pred ccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccc-cccCCCCCceeeecCCCCCC
Q psy4398 24 QANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI-DFVDPLDGSVVFRTCPREKN 102 (306)
Q Consensus 24 ~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 102 (306)
+..+.-+..++..|.+ -|..-..++.+.|+-.++|........ .+ .++.-+.+. +... ...+.....+.
T Consensus 10 fR~l~~~~~~~~~pg~--~d~~sA~la~~aGF~al~~sg~~vA~s-lG--~pD~~~~t~~e~~~-----~vrrI~~a~~l 79 (289)
T COG2513 10 FRALHASGDPLVLPGA--WDAGSALLAERAGFKALYLSGAGVAAS-LG--LPDLGITTLDEVLA-----DARRITDAVDL 79 (289)
T ss_pred HHHHHhCCCCEEecCC--cCHHHHHHHHHcCCeEEEeccHHHHHh-cC--CCccccccHHHHHH-----HHHHHHhhcCC
Confidence 3444445456666665 233444556688987776654322110 00 111100000 0000 01112233467
Q ss_pred ceEEEecC--CCHHHHHHHHHHHh-cCCCEEEEccC-CCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEec
Q psy4398 103 KIILQIGT--ADPERALEAAKKVE-HDVAAIDINMG-CPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIR 177 (306)
Q Consensus 103 p~ivql~g--~~~~~~~~aa~~~~-~g~d~veln~g-cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir 177 (306)
|+++-+-. .++...++..+.+. .|+.+|.|.=- -|.. +..--|..+ -+++...+-|++++++. +.++.+--|
T Consensus 80 Pv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~--cgh~~gk~l-~~~~e~v~rIkAa~~a~~~~~fvi~AR 156 (289)
T COG2513 80 PVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKR--CGHLPGKEL-VSIDEMVDRIKAAVEARRDPDFVIIAR 156 (289)
T ss_pred ceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchh--cCCCCCCCc-CCHHHHHHHHHHHHHhccCCCeEEEee
Confidence 99998832 23777777777665 49999888411 1110 000011122 23333333444444444 344444444
Q ss_pred c---C-CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe----cC--CCCHHHHHH
Q psy4398 178 V---F-HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN----GG--SKEIVDYGG 245 (306)
Q Consensus 178 ~---g-~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~----GG--I~s~~~~~~ 245 (306)
. + ...+++++=+++..++|+|.|-..+. .+.+.++++.+++++|+.+| |+ ..|.++.++
T Consensus 157 Tda~~~~~ld~AI~Ra~AY~eAGAD~if~~al---------~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~ 225 (289)
T COG2513 157 TDALLVEGLDDAIERAQAYVEAGADAIFPEAL---------TDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAE 225 (289)
T ss_pred hHHHHhccHHHHHHHHHHHHHcCCcEEccccC---------CCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHh
Confidence 2 1 12578889999999999999987654 24688899999998776655 33 455544433
No 385
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=93.78 E-value=0.95 Score=40.77 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHH-HhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~-~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+.+...+-|+. +++|+|.|++|..+..+.... . +-....+.+..+++.+++.++.||++-.. -.+.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~--~--~~~~E~~rl~~~v~~l~~~~~~piSIDT~-------~~~v~ 89 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEP--V--SVEEELERVIPVLRALAGEPDVPISVDTF-------NAEVA 89 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc--C--CHHHHHHHHHHHHHHHHhcCCCeEEEeCC-------cHHHH
Confidence 355666665554 457999999998875542211 0 11123456788888888877888776655 24566
Q ss_pred HHHHHcCCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 190 KRLEACGIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 190 ~~l~~~G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
+...+.|++.|. +++.. .+ +-+..+.+..++|++..
T Consensus 90 ~aaL~~g~~iINdis~~~--------~~-~~~~~l~~~~~~~vV~m 126 (258)
T cd00423 90 EAALKAGADIINDVSGGR--------GD-PEMAPLAAEYGAPVVLM 126 (258)
T ss_pred HHHHHhCCCEEEeCCCCC--------CC-hHHHHHHHHcCCCEEEE
Confidence 666778888765 22211 11 23334555567777765
No 386
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=93.76 E-value=0.25 Score=41.66 Aligned_cols=74 Identities=30% Similarity=0.361 Sum_probs=43.9
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI 197 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~ 197 (306)
-|+++++ |+-+|..-=-.|... |+. -|-+-+.||..+.+|. +++.+||..|.|+|- .--|+.|+..|+
T Consensus 26 QAkIAE~AGA~AVMaLervPadi-R~~-GGVaRMsDP~~I~eI~----~aVsIPVMAK~RIGH-----fvEAqiLealgV 94 (208)
T PF01680_consen 26 QAKIAEEAGAVAVMALERVPADI-RAA-GGVARMSDPKMIKEIM----DAVSIPVMAKVRIGH-----FVEAQILEALGV 94 (208)
T ss_dssp HHHHHHHHT-SEEEE-SS-HHHH-HHT-TS---S--HHHHHHHH----HH-SSEEEEEEETT------HHHHHHHHHTT-
T ss_pred HHHHHHHhCCeEEEEeccCCHhH-Hhc-CCccccCCHHHHHHHH----HheEeceeeccccce-----eehhhhHHHhCC
Confidence 3566664 888877643445432 222 2556778898766665 456899999999764 345789999999
Q ss_pred cEEEEc
Q psy4398 198 IAIGVH 203 (306)
Q Consensus 198 d~i~v~ 203 (306)
|+|.=+
T Consensus 95 D~IDES 100 (208)
T PF01680_consen 95 DYIDES 100 (208)
T ss_dssp SEEEEE
T ss_pred ceeccc
Confidence 999854
No 387
>PLN02363 phosphoribosylanthranilate isomerase
Probab=93.73 E-value=4.5 Score=36.47 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=43.1
Q ss_pred ceEEEecCCCH-HHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 103 KIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 103 p~ivql~g~~~-~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
...+.|+|-.. ++...+ ++.|+|.|-+.+..+++. + =.++.+.++++.+......+|.|-.. .+
T Consensus 46 ~~~VKICGit~~eda~~a---~~~GaD~iGfIf~~~SpR-----~-----Vs~e~a~~I~~~l~~~~~~~VgVfv~--~~ 110 (256)
T PLN02363 46 RPLVKMCGITSARDAAMA---VEAGADFIGMILWPKSKR-----S-----ISLSVAKEISQVAREGGAKPVGVFVD--DD 110 (256)
T ss_pred CceEEECCCCcHHHHHHH---HHcCCCEEEEecCCCCCC-----c-----CCHHHHHHHHHhccccCccEEEEEeC--CC
Confidence 45799999654 333322 246999999975433321 1 13555666666554211112333322 22
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 182 EADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
..++++.+++.|.|.|.+|+
T Consensus 111 ---~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 111 ---ANTILRAADSSDLELVQLHG 130 (256)
T ss_pred ---HHHHHHHHHhcCCCEEEECC
Confidence 33444455566666666665
No 388
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=93.65 E-value=0.7 Score=43.15 Aligned_cols=91 Identities=12% Similarity=0.174 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC--CCCCCCCC----CcHHHHHHHHhhCC
Q psy4398 155 DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT--KAERPRHR----NRIEMIRTLTQHLK 228 (306)
Q Consensus 155 ~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~--~~~~~~~p----~~~~~v~~i~~~~~ 228 (306)
+...+-++..++..+.|+++-+. |.+.++..++++.++++|+|+|.++-.. ......+. ...+.++.+++.++
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~ 163 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT 163 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC
Confidence 33444444455555789988874 3567789999999999999999986432 11111111 12467888998889
Q ss_pred CcEEEe--cCCCCHHHHHHH
Q psy4398 229 IPVIAN--GGSKEIVDYGGV 246 (306)
Q Consensus 229 ipvia~--GGI~s~~~~~~~ 246 (306)
+||+.= ..+.++.+..+.
T Consensus 164 iPv~vKl~p~~~~~~~~a~~ 183 (325)
T cd04739 164 IPVAVKLSPFFSALAHMAKQ 183 (325)
T ss_pred CCEEEEcCCCccCHHHHHHH
Confidence 999876 333344444333
No 389
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.61 E-value=0.77 Score=42.48 Aligned_cols=152 Identities=11% Similarity=0.091 Sum_probs=85.8
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC-----CC---------hHH
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF-----HN---------EAD 184 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g-----~~---------~~~ 184 (306)
++++++ |+|++-+=+-. +.|+--..=..+..+++++.+..+. -++|+++-+=.. .. ++.
T Consensus 111 ~~rike~GadavK~Llyy-----~pD~~~~in~~k~a~vervg~eC~a-~dipf~lE~ltY~~~~~d~~~~~yak~kP~~ 184 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYY-----DVDEPDEINEQKKAYIERIGSECVA-EDIPFFLEILTYDEKIADNGSVEYAKVKPHK 184 (324)
T ss_pred HHHHHHhCCCeEEEEEEE-----CCCCCHHHHHHHHHHHHHHHHHHHH-CCCCeEEEEeeccCcccccccHHHHhhChHH
Confidence 566765 99999884331 1111000000122334444444333 278888764331 11 334
Q ss_pred HHHHHHHHHH--cCCcEEEEcc----cCCCCCC------CCCCcHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHHh--
Q psy4398 185 TIALCKRLEA--CGIIAIGVHG----RTKAERP------RHRNRIEMIRTLTQHLKIP-VIANGGSKEIVDYGGVFSL-- 249 (306)
Q Consensus 185 ~~~~a~~l~~--~G~d~i~v~~----~~~~~~~------~~p~~~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l~~-- 249 (306)
..+.++.+.+ .|+|-+-+-- ...++.. ........+++..+..++| |+.++|+. .+...+.++.
T Consensus 185 V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~-~~~F~~~l~~A~ 263 (324)
T PRK12399 185 VNEAMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKEQDAATHLPYIYLSAGVS-AELFQETLVFAH 263 (324)
T ss_pred HHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCC-HHHHHHHHHHHH
Confidence 5677788855 8999998731 1112211 1111223455566667888 67778875 5556555543
Q ss_pred -------hhhhccccCCCCC--c---hHHHHHHHHHhcCCC
Q psy4398 250 -------NCAFLRNHYPVEK--L---PKTILYAHCKYKRFE 278 (306)
Q Consensus 250 -------~v~vGrall~~p~--~---~~~~l~~~~~~~g~~ 278 (306)
|+..||+..+++. + .....++||...|.+
T Consensus 264 ~aGa~fsGvL~GRAtW~~~v~~~~~~g~~~~~ewL~t~g~~ 304 (324)
T PRK12399 264 EAGAKFNGVLCGRATWAGSVKVYIEQGEAAAREWLRTEGFE 304 (324)
T ss_pred HcCCCcceEEeehhhhHhhhhhhhcCCHHHHHHHHHHHhHH
Confidence 5689999999872 2 334999999999854
No 390
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=93.60 E-value=0.96 Score=42.92 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=31.7
Q ss_pred CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 214 RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 214 p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
..+|+.++.+++..++|||. .||.+.+|++.+++.|+
T Consensus 210 ~~tW~di~wlr~~~~~Piiv-KgV~~~~dA~~a~~~Gv 246 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQAGA 246 (367)
T ss_pred CCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHHcCC
Confidence 35799999999999999875 56788999999999876
No 391
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.54 E-value=1.7 Score=37.86 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=76.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC-
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF- 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g- 179 (306)
.|++.=|.+.++++....++.+.+ |++.|||-+.+|.. .+.|+++++... .+-+..|
T Consensus 13 ~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a------------------~e~I~~l~~~~p---~~lIGAGT 71 (211)
T COG0800 13 QPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAA------------------LEAIRALAKEFP---EALIGAGT 71 (211)
T ss_pred CCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCH------------------HHHHHHHHHhCc---ccEEcccc
Confidence 478888889999999999997765 99999998777662 456777777644 3333322
Q ss_pred -CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 180 -HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 180 -~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+ .+-++.+.++|++.++ +.. .+-+.++ .....++|++ =|+.|+.++..++++|.
T Consensus 72 VL~----~~q~~~a~~aGa~fiV-sP~---------~~~ev~~-~a~~~~ip~~--PG~~TptEi~~Ale~G~ 127 (211)
T COG0800 72 VLN----PEQARQAIAAGAQFIV-SPG---------LNPEVAK-AANRYGIPYI--PGVATPTEIMAALELGA 127 (211)
T ss_pred ccC----HHHHHHHHHcCCCEEE-CCC---------CCHHHHH-HHHhCCCccc--CCCCCHHHHHHHHHcCh
Confidence 23 3445667789999985 211 1223433 3344467775 58888998888888754
No 392
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.51 E-value=2.1 Score=37.34 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=75.3
Q ss_pred CCceEEEecCC----CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 101 KNKIILQIGTA----DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 101 ~~p~ivql~g~----~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
|..+.+|.... +.....++++.+.+ |+..+++ ++ + +.++.+++..++|+..-
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~--~~-----------------~----~~~~~i~~~~~iPil~~ 66 (219)
T cd04729 10 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA--NG-----------------V----EDIRAIRARVDLPIIGL 66 (219)
T ss_pred CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc--CC-----------------H----HHHHHHHHhCCCCEEEE
Confidence 44455565432 34567788887664 8888774 11 2 34566666678898642
Q ss_pred eccCCC-----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 176 IRVFHN-----EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 176 ir~g~~-----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
.+.+.+ .....+.++.+.++|+|.|.+...... ...+....++++.+++..++|++. ++.|++++..+.+.+
T Consensus 67 ~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~~~G 143 (219)
T cd04729 67 IKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEYNCLLMA--DISTLEEALNAAKLG 143 (219)
T ss_pred EecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHHHcC
Confidence 221111 011245778889999998877543211 111112456777887776677765 678899988887776
Q ss_pred h
Q psy4398 251 C 251 (306)
Q Consensus 251 v 251 (306)
+
T Consensus 144 ~ 144 (219)
T cd04729 144 F 144 (219)
T ss_pred C
Confidence 5
No 393
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=93.50 E-value=1.3 Score=41.27 Aligned_cols=106 Identities=10% Similarity=0.057 Sum_probs=60.4
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC--CChHHHHHHHHHHHHcCCcEEEE
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGV 202 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g--~~~~~~~~~a~~l~~~G~d~i~v 202 (306)
.|+|.|+||+.+..++. + ...++...++++.|.+.+++|+.+-.+.. .+.+-....++.+.. =..| +
T Consensus 88 ~GAd~Idl~~~s~dp~~-~-------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g--~~pL-I 156 (319)
T PRK04452 88 YGADMITLHLISTDPNG-K-------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEG--ERCL-L 156 (319)
T ss_pred hCCCEEEEECCCCCccc-c-------cchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCC--CCCE-E
Confidence 39999999975433210 0 12356678899999889999998766621 232323333232221 1223 2
Q ss_pred cccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 203 ~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+-+ ..+++.+..+.+..+.||++.. +.+++.++++...
T Consensus 157 nSat-------~en~~~i~~lA~~y~~~Vva~s-~~Dln~ak~L~~~ 195 (319)
T PRK04452 157 GSAE-------EDNYKKIAAAAMAYGHAVIAWS-PLDINLAKQLNIL 195 (319)
T ss_pred EECC-------HHHHHHHHHHHHHhCCeEEEEc-HHHHHHHHHHHHH
Confidence 2222 1256777777777888888876 3345555555443
No 394
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=93.49 E-value=1.6 Score=42.04 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=67.2
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= |+..|.. .-+.+|.+.+.+.+++..+.++...
T Consensus 141 ~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~ 212 (406)
T cd08207 141 EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPY--------SPLDERVRAVMRVINDHAQRTGRKV 212 (406)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCC--------CcHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5689999875 6789999999887765 7777522 3433221 2344667777888888877777654
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+=++.+.+.|++++.+.
T Consensus 213 ~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~ 243 (406)
T cd08207 213 MYAFNITDDIDEMRRNHDLVVEAGGTCVMVS 243 (406)
T ss_pred eEEEecCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 4333332557889999999999999999874
No 395
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=93.46 E-value=4.3 Score=35.59 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=76.7
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
+.++++-|--.|+..+..-+ .++.|+|.+-+|..+ ..+.+.+.++++++. +.-+.|-+-...
T Consensus 56 ~~~v~~DLK~~Di~~~v~~~-~~~~Gad~vTvH~~a----------------~~~~i~~~~~~~~~~-g~~~~V~llts~ 117 (216)
T PRK13306 56 DKIIVADTKIADAGKILAKM-AFEAGADWVTVICAA----------------HIPTIKAALKVAKEF-NGEIQIELYGNW 117 (216)
T ss_pred CCEEEEEEeecCCcHHHHHH-HHHCCCCEEEEeCCC----------------CHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 45788888777777666534 345699999998543 234556666666542 333333333223
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCC---CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKA---ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFL 254 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~---~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vG 254 (306)
+.++. +...+.|++.+.+|-.... +....|..++.++++++. +..+...|||+ ++.+....+. .+.+|
T Consensus 118 ~~~~l----~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~-~~~i~V~gGI~-~~~~~~~~~~~ad~~VvG 191 (216)
T PRK13306 118 TWEQA----QQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDM-GFKVSVTGGLV-VEDLKLFKGIPVKTFIAG 191 (216)
T ss_pred CHHHH----HHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcC-CCeEEEcCCCC-HhhHHHHhcCCCCEEEEC
Confidence 33322 3455667666655432211 111123234445555432 44488889998 4444444443 44999
Q ss_pred cccCCCCC
Q psy4398 255 RNHYPVEK 262 (306)
Q Consensus 255 rall~~p~ 262 (306)
|+++..+.
T Consensus 192 r~I~~a~d 199 (216)
T PRK13306 192 RAIRGAAD 199 (216)
T ss_pred CcccCCCC
Confidence 99986443
No 396
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=93.41 E-value=0.94 Score=41.93 Aligned_cols=148 Identities=9% Similarity=0.077 Sum_probs=84.6
Q ss_pred HHHHhc-CCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEeccC---------C-----
Q psy4398 120 AKKVEH-DVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRVF---------H----- 180 (306)
Q Consensus 120 a~~~~~-g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g---------~----- 180 (306)
++++++ |+|++-+=+-. |. . ..-.| +.-.++++++.+.| ++|+++-+=.. .
T Consensus 112 ~~rike~GadavK~Llyy~pD------~--~~ein--~~k~a~vervg~ec~a~dipf~lE~ltYd~~~~~~~~~~yak~ 181 (325)
T TIGR01232 112 AKRLKEQGANAVKFLLYYDVD------D--AEEIN--IQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFAKV 181 (325)
T ss_pred HHHHHHhCCCeEEEEEEeCCC------C--ChHHH--HHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCCCCcHHHHHh
Confidence 566765 99999884331 11 0 00001 11233444444443 78888764331 0
Q ss_pred ChHHHHHHHHHHHH--cCCcEEEEc----ccCCCCC------CCCCCcHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHH
Q psy4398 181 NEADTIALCKRLEA--CGIIAIGVH----GRTKAER------PRHRNRIEMIRTLTQHLKIP-VIANGGSKEIVDYGGVF 247 (306)
Q Consensus 181 ~~~~~~~~a~~l~~--~G~d~i~v~----~~~~~~~------~~~p~~~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l 247 (306)
.++...+.++.+.+ .|+|-+-+- ....++. |........+++..+..++| |+.++|+. .+...+.+
T Consensus 182 kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~eq~~~~~~P~i~LSaGV~-~~~F~~~l 260 (325)
T TIGR01232 182 KPRKVNEAMKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEVVYTKEEAAQHFKDQDAATHLPYIYLSAGVS-AELFQETL 260 (325)
T ss_pred ChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCC-HHHHHHHH
Confidence 02235567777777 899999864 2211221 11112233444445567888 67778875 55566555
Q ss_pred Hh---------hhhhccccCCCCC--c---hHHHHHHHHHhcCCC
Q psy4398 248 SL---------NCAFLRNHYPVEK--L---PKTILYAHCKYKRFE 278 (306)
Q Consensus 248 ~~---------~v~vGrall~~p~--~---~~~~l~~~~~~~g~~ 278 (306)
+. |+..||+..++.. + .....++||...|.+
T Consensus 261 ~~A~~aGa~fsGvL~GRAtW~~~v~~~~~~g~~~~~ewL~t~g~~ 305 (325)
T TIGR01232 261 KFAHEAGAKFNGVLCGRATWSGAVQVYIEQGEDAAREWLRTTGFK 305 (325)
T ss_pred HHHHHcCCCcceEEeehhhhHhhhhhhhcCCHHHHHHHHHHHhHH
Confidence 43 5689999999872 2 334999999998854
No 397
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=93.40 E-value=1.3 Score=41.59 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=78.9
Q ss_pred eeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
+.+.+++.|.|++..++... +... +.+.+|.+.| |+..+++..++.++- ..+.||
T Consensus 149 L~~~~~~~Gl~v~tev~d~~--~~~~----l~~~vd~lqI--------------gAr~~~N~~LL~~va-----~~~kPV 203 (335)
T PRK08673 149 LAEAREETGLPIVTEVMDPR--DVEL----VAEYVDILQI--------------GARNMQNFDLLKEVG-----KTNKPV 203 (335)
T ss_pred HHHHHHHcCCcEEEeeCCHH--HHHH----HHHhCCeEEE--------------CcccccCHHHHHHHH-----cCCCcE
Confidence 34445567888887775432 2222 2223577777 556667777665553 468999
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEE-EcccCCC-CCC-CCCCcHHHHHHHHhhCCCcEEE
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIG-VHGRTKA-ERP-RHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~-v~~~~~~-~~~-~~p~~~~~v~~i~~~~~ipvia 233 (306)
.+|-....+.+++...++.+...|..-++ ++...+. ..+ ....++..+..+++.+++|||+
T Consensus 204 iLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~ 267 (335)
T PRK08673 204 LLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIV 267 (335)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEE
Confidence 99999877889999999999999986665 4532322 122 2345788899999999999977
No 398
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=93.39 E-value=0.66 Score=40.46 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=46.2
Q ss_pred HHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEeccCCChHHHHHHHHHHHHcCC
Q psy4398 119 AAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIRVFHNEADTIALCKRLEACGI 197 (306)
Q Consensus 119 aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~ 197 (306)
+.+.+++|+|.||||.++-.+... ...-....+.+..+++.+++ ..++||++-.. + .+.++.+.++|+
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~~----~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~---~----~~v~~~aL~~g~ 93 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGAT----PVSEEEEMERLVPVLQAIREENPDVPLSIDTF---N----PEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTSS----SSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES---S----HHHHHHHHHHTS
T ss_pred HHHHHHhcCCEEEecccccCCCCC----cCCHHHHHHHHHHHHHHHhccCCCeEEEEECC---C----HHHHHHHHHcCc
Confidence 334556799999999987443210 11223456678888888886 55889988777 2 344444555588
Q ss_pred cEEEE
Q psy4398 198 IAIGV 202 (306)
Q Consensus 198 d~i~v 202 (306)
+.|.=
T Consensus 94 ~~ind 98 (210)
T PF00809_consen 94 DIIND 98 (210)
T ss_dssp SEEEE
T ss_pred ceEEe
Confidence 88763
No 399
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=93.33 E-value=1.1 Score=40.13 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=75.6
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+.|.|++--+. ++++...++ +.+|.+.| |+.++++.++ ++++.+ ++.||.+|-.
T Consensus 70 ~~~glpvvTeV~--~~~~~~~va----e~vDilQI--------------gArn~rn~~L----L~a~g~-t~kpV~lKrG 124 (258)
T TIGR01362 70 EEFGVPILTDVH--ESSQCEPVA----EVVDIIQI--------------PAFLCRQTDL----LVAAAK-TGRIVNVKKG 124 (258)
T ss_pred HHhCCceEEEeC--CHHHHHHHH----hhCcEEEe--------------CchhcchHHH----HHHHhc-cCCeEEecCC
Confidence 346778877663 333333333 34789888 4556666554 555543 5899999999
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CCcHHHHHHHHhhCCCcEEE
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH-RNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p~~~~~v~~i~~~~~ipvia 233 (306)
.+.+++++...++.+...|-+-|.+.-|-..-.|.. ..++..+..+++. ++|||.
T Consensus 125 ~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~~-~~PVi~ 180 (258)
T TIGR01362 125 QFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMREL-GCPVIF 180 (258)
T ss_pred CcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhc-CCCEEE
Confidence 888899999999999999999888765543222322 3466777777775 899986
No 400
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=93.32 E-value=3.7 Score=36.01 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=60.7
Q ss_pred eEEEecCC-CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc---C
Q psy4398 104 IILQIGTA-DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV---F 179 (306)
Q Consensus 104 ~ivql~g~-~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~---g 179 (306)
++++|.+. +.++..+.++... |+|.||+ |-|.+... ..+.+.+.++.+++..+.|+++=+|. |
T Consensus 2 i~~~i~~~~~~~e~~~~~~~~~-~aD~vEl---------R~D~~~~~---~~~~~~~~~~~lr~~~~~piI~T~R~~~eG 68 (225)
T cd00502 2 ICVPLTGPDLLEEALSLLELLL-GADAVEL---------RVDLLEDP---SIDDVAEQLSLLRELTPLPIIFTVRTKSEG 68 (225)
T ss_pred EEEEecCCCCHHHHHHHHHHhc-CCCEEEE---------EEeecccc---chHHHHHHHHHHHHhCCCCEEEEEcccccC
Confidence 45677666 6666555555444 8999999 33333211 14566778888888777899998886 2
Q ss_pred ----CChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 180 ----HNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 180 ----~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.+.++..++.+.+.+.|+|+|.+.-
T Consensus 69 G~~~~~~~~~~~ll~~~~~~~~d~vDiEl 97 (225)
T cd00502 69 GNFEGSEEEYLELLEEALKLGPDYVDIEL 97 (225)
T ss_pred CCcCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 2345577888888889999999853
No 401
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=93.31 E-value=0.48 Score=42.36 Aligned_cols=149 Identities=9% Similarity=0.070 Sum_probs=85.4
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc----CCCh--------HHHH
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV----FHNE--------ADTI 186 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~----g~~~--------~~~~ 186 (306)
|+++++ |++++-+-+-. +.|+- ..-+++...+.++....++. ++|+++-.=. ..+. ....
T Consensus 117 a~riK~~G~~avK~Lvy~-----~~D~~-e~neqk~a~ierigsec~ae-di~f~lE~ltyd~~~~d~~eyak~kp~kV~ 189 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYY-----RSDED-EINEQKLAYIERIGSECHAE-DLPFFLEPLTYDPRIGDKEEYAKRKPQKVI 189 (306)
T ss_pred HHHHHHhcccceEEEEEE-----cCCch-HHhHHHHHHHHHHHHHhhhc-CCceeEeeeecCCCCCChHHHHhhchHHHH
Confidence 567775 99998885432 11221 01112233344444433322 7887776433 1122 2356
Q ss_pred HHHHHHHHcCCcEEEEcccC-CCCCCCCCCcHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHHh-------hhhhcccc
Q psy4398 187 ALCKRLEACGIIAIGVHGRT-KAERPRHRNRIEMIRTLTQHLKIP-VIANGGSKEIVDYGGVFSL-------NCAFLRNH 257 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~-~~~~~~~p~~~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l~~-------~v~vGral 257 (306)
+-++.+.+.|+|-+-+--.. .++ ..+.....+.+...+.++| |+.+-||. .+.+.+.++. |+..||+.
T Consensus 190 ~a~k~fsd~GadvlKvevPvyveG--e~~ea~~~f~~~~~~~~lP~i~LSAGV~-~klF~~tv~fA~eaGAsGvL~GRAt 266 (306)
T COG3684 190 EAMKEFSDSGADVLKVEVPVYVEG--EQEEAAAAFQRQNDHINLPWIYLSAGVS-AKLFQRTVRFAMEAGASGVLAGRAT 266 (306)
T ss_pred HHHHHhccCCCceEEeecceeccC--ccHHHHHHHHHhhcCCCCCeEEEecCcc-HHHhHHHHHHHHHcCCceeEechhh
Confidence 67788888999999874322 111 1122334445555566888 77788876 3444444432 56889998
Q ss_pred CCCC-CchHHHHHHHHHhcCCC
Q psy4398 258 YPVE-KLPKTILYAHCKYKRFE 278 (306)
Q Consensus 258 l~~p-~~~~~~l~~~~~~~g~~ 278 (306)
.++- ....-+.++||..-|.+
T Consensus 267 Wa~~v~~g~d~~re~Lrt~g~~ 288 (306)
T COG3684 267 WAGVVEQGEDAAREWLRTVGFP 288 (306)
T ss_pred hhcccccCcHHHHHHHHhhccc
Confidence 8876 44445888999988855
No 402
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.26 E-value=0.57 Score=43.39 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=86.3
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-----C---------hH
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-----N---------EA 183 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-----~---------~~ 183 (306)
.++++++ |+|++-+=+-. +.|+--..=..+..+++++.+..+. -++|+++-+=..+ . ++
T Consensus 112 s~~rike~GadavK~Llyy-----~pD~~~ein~~k~a~vervg~eC~a-~dipf~lE~l~Yd~~~~d~~~~eyak~kP~ 185 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYY-----DVDGDEEINDQKQAYIERIGSECTA-EDIPFFLELLTYDERISDNNSAAYAKLKPH 185 (329)
T ss_pred hHHHHHHhCCCeEEEEEEE-----CCCCCHHHHHHHHHHHHHHHHHHHH-CCCCeEEEEeccCCcccccccHHHHhhChH
Confidence 4567765 99999884331 0110000000112334444444333 2889888654311 0 22
Q ss_pred HHHHHHHHHHH--cCCcEEEEcc----cCCCCC------CCCCCcHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHHh-
Q psy4398 184 DTIALCKRLEA--CGIIAIGVHG----RTKAER------PRHRNRIEMIRTLTQHLKIP-VIANGGSKEIVDYGGVFSL- 249 (306)
Q Consensus 184 ~~~~~a~~l~~--~G~d~i~v~~----~~~~~~------~~~p~~~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l~~- 249 (306)
...+.++.+.+ .|+|-+-+-- ...++. |........+++..+..++| |+.++|+. .+...+.++.
T Consensus 186 ~V~~amkefs~~~~gvDVlKvEvPvn~~~veG~~~g~~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~-~~~F~~~l~~A 264 (329)
T PRK04161 186 KVNGAMKVFSDKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEAATHLPYIYLSAGVS-AKLFQETLVFA 264 (329)
T ss_pred HHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhcccCCCEEEEcCCCC-HHHHHHHHHHH
Confidence 35677777775 7999998721 111221 11112234556666667888 67778875 5566665543
Q ss_pred --------hhhhccccCCCC--Cc---hHHHHHHHHHhcCCC
Q psy4398 250 --------NCAFLRNHYPVE--KL---PKTILYAHCKYKRFE 278 (306)
Q Consensus 250 --------~v~vGrall~~p--~~---~~~~l~~~~~~~g~~ 278 (306)
|+..||+..+++ .+ .+...++||...|.+
T Consensus 265 ~~aGa~fnGvL~GRAtW~~~v~~~~~~g~~a~~~wL~t~g~~ 306 (329)
T PRK04161 265 AEAGAQFNGVLCGRATWAGSVPVYITEGEEAARKWLCTEGFQ 306 (329)
T ss_pred HhcCCCcccEEeehhhhhhhhhhhhcCCHHHHHHHHHHHhHH
Confidence 568999999987 22 124899999999855
No 403
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=93.20 E-value=0.81 Score=43.53 Aligned_cols=77 Identities=23% Similarity=0.291 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+.+.|.+.|+.+.+ |+|-|-|- |-.| .-.|....|+|+++++.+++||.+-......... ....
T Consensus 153 Ht~e~yv~~akel~~~g~DSIciK----------DmaG---lltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~-m~yl 218 (472)
T COG5016 153 HTLEYYVELAKELLEMGVDSICIK----------DMAG---LLTPYEAYELVKAIKKELPVPVELHTHATSGMAE-MTYL 218 (472)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEee----------cccc---cCChHHHHHHHHHHHHhcCCeeEEecccccchHH-HHHH
Confidence 356889999987765 99988883 3333 2478999999999999999888877663111111 1222
Q ss_pred HHHHHcCCcEEEE
Q psy4398 190 KRLEACGIIAIGV 202 (306)
Q Consensus 190 ~~l~~~G~d~i~v 202 (306)
.+.++|+|.|..
T Consensus 219 -kAvEAGvD~iDT 230 (472)
T COG5016 219 -KAVEAGVDGIDT 230 (472)
T ss_pred -HHHHhCcchhhh
Confidence 335699999974
No 404
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=93.20 E-value=2 Score=40.82 Aligned_cols=46 Identities=13% Similarity=-0.024 Sum_probs=37.9
Q ss_pred CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-------hhccccCCCC
Q psy4398 215 NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-------AFLRNHYPVE 261 (306)
Q Consensus 215 ~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-------~vGrall~~p 261 (306)
.+|+.++++++.+++||+.= ||.+.++++.+.+.|+ -=||.+...|
T Consensus 215 ~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~ 267 (367)
T TIGR02708 215 LSPRDIEEIAGYSGLPVYVK-GPQCPEDADRALKAGASGIWVTNHGGRQLDGGP 267 (367)
T ss_pred CCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHHHcCcCEEEECCcCccCCCCCC
Confidence 57899999999999999955 7999999999999876 2267776666
No 405
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=93.10 E-value=1.4 Score=41.50 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=61.7
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC-------C--C----------------------------CC
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK-------A--E----------------------------RP 211 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~-------~--~----------------------------~~ 211 (306)
+.|+++-+....+.+.+.++.++++++|+++|.+|--.. + . ..
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 357887766555667789999999999999999863221 0 0 00
Q ss_pred CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 212 RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 212 ~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+...|+.++++++.+++|||.- ||.+.++++.+.+.|+
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~~G~ 235 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAEYGV 235 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHHcCC
Confidence 12246889999999999999977 6789999999988765
No 406
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=93.01 E-value=1.2 Score=41.58 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=42.8
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
+.+++.|++.+-|..+. -.++++++.+++. +.|||.+-|..+.++++.+++...
T Consensus 103 d~l~~~~v~~~KIaS~~-------~~n~pLL~~~A~~-gkPvilStGmatl~Ei~~Av~~i~ 156 (329)
T TIGR03569 103 DFLEDLGVPRFKIPSGE-------ITNAPLLKKIARF-GKPVILSTGMATLEEIEAAVGVLR 156 (329)
T ss_pred HHHHhcCCCEEEECccc-------ccCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHHHH
Confidence 44567888888886553 2478899999865 899999999999999999988644
No 407
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.99 E-value=0.94 Score=42.19 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCc
Q psy4398 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACG--IIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIP 230 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G--~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ip 230 (306)
+++...+.++.++. .-+.+-++.|.+.++... +..+.++| +|.|.+..-. .++. .-++.++.+++.++.|
T Consensus 67 ~~E~~~sfvrk~k~---~~L~v~~SvG~t~e~~~r-~~~lv~a~~~~d~i~~D~ah---g~s~-~~~~~i~~i~~~~p~~ 138 (321)
T TIGR01306 67 DEESRIPFIKDMQE---RGLFASISVGVKACEYEF-VTQLAEEALTPEYITIDIAH---GHSN-SVINMIKHIKTHLPDS 138 (321)
T ss_pred CHHHHHHHHHhccc---cccEEEEEcCCCHHHHHH-HHHHHhcCCCCCEEEEeCcc---CchH-HHHHHHHHHHHhCCCC
Confidence 44443444444432 234666666666665544 45555667 7999875321 2221 2568899999999999
Q ss_pred EEEecCCCCHHHHHHHHHhhh
Q psy4398 231 VIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~~v 251 (306)
.+..|+|.+.++++.+++.|+
T Consensus 139 ~vi~GnV~t~e~a~~l~~aGa 159 (321)
T TIGR01306 139 FVIAGNVGTPEAVRELENAGA 159 (321)
T ss_pred EEEEecCCCHHHHHHHHHcCc
Confidence 999999999999999999865
No 408
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=92.85 E-value=2 Score=41.19 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=67.7
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= |+..|.. .-+.+|.+.+.+.+++..+.++...
T Consensus 122 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~a~~~a~~~a~~eTG~~~ 193 (391)
T cd08209 122 HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPL--------APALERIRACRPVLQEVYEQTGRRT 193 (391)
T ss_pred CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCC--------CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5789999875 6789999999887765 7776522 3332221 2345677777888888888887654
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+=++.+.+.|++++.+.
T Consensus 194 ~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~ 224 (391)
T cd08209 194 LYAVNLTGPVFTLKEKARRLVEAGANALLFN 224 (391)
T ss_pred eEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 4333332567889999999999999999864
No 409
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=92.85 E-value=0.28 Score=42.33 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=64.8
Q ss_pred HhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEE
Q psy4398 123 VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202 (306)
Q Consensus 123 ~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v 202 (306)
++.|+|.+-+.+. |.+. . + -.++.+.++++.++.. +|.|-.. . +..++.+.+++.+.|.|.+
T Consensus 16 ~~~g~d~~Gfi~~-~~S~---R-~-----v~~~~a~~l~~~~~~~---~VgVf~~--~---~~~~I~~~~~~~~ld~vQL 77 (197)
T PF00697_consen 16 AELGADYLGFIFY-PKSP---R-Y-----VSPDQARELVSAVPPK---IVGVFVN--Q---SPEEILEIVEELGLDVVQL 77 (197)
T ss_dssp HHHTSSEEEEE---TTCT---T-B-------HHHHHHHHCCSSSS---EEEEESS--S----HHHHHHHHHHCTESEEEE
T ss_pred HHcCCCEEeeecC-CCCC---C-c-----cCHHHHHHHHHhcCCC---EEEEEcC--C---CHHHHHHHHHHcCCCEEEE
Confidence 3458899888754 3310 0 1 1355555555444311 3333333 2 3556667778888999998
Q ss_pred cccCC--------------------C-----------------------CCCCCCCcHHHHHHHHhhC-CCcEEEecCCC
Q psy4398 203 HGRTK--------------------A-----------------------ERPRHRNRIEMIRTLTQHL-KIPVIANGGSK 238 (306)
Q Consensus 203 ~~~~~--------------------~-----------------------~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~ 238 (306)
|+... . +......+|+.+..+.+.. +.|++..|||+
T Consensus 78 HG~e~~e~~~~l~~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~~~dw~~~~~~~~~~~~~p~iLAGGl~ 157 (197)
T PF00697_consen 78 HGDESPEYIKLLRAGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGKTFDWSLLKKIVESYSPKPVILAGGLN 157 (197)
T ss_dssp -SGG-HHHHHHHHTTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS---GGGGCCCHHT-GTSTEEEESS--
T ss_pred CCCCCHHHHHHhhcCceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCcccCHHHhhhhhhhcccCcEEEEcCCC
Confidence 87430 0 0001134788888887743 89999999987
Q ss_pred CHHHHHHHHHh----hhhhccccCCCC
Q psy4398 239 EIVDYGGVFSL----NCAFLRNHYPVE 261 (306)
Q Consensus 239 s~~~~~~~l~~----~v~vGrall~~p 261 (306)
+++..++++. ++-+-+++=.+|
T Consensus 158 -p~NV~~ai~~~~p~gvDvsSGvE~~p 183 (197)
T PF00697_consen 158 -PENVREAIRQVRPYGVDVSSGVETSP 183 (197)
T ss_dssp -TTTHHHHHHHC--SEEEESGGGEEET
T ss_pred -hHHHHHHHHhcCceEEEeCCccccCC
Confidence 6777777773 555555544444
No 410
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=92.84 E-value=0.73 Score=41.94 Aligned_cols=79 Identities=11% Similarity=0.145 Sum_probs=48.2
Q ss_pred HHHHHHHHhccc-ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH-HHHHHHHhhC-CCcEEEe
Q psy4398 158 CNILTTLISNLS-IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI-EMIRTLTQHL-KIPVIAN 234 (306)
Q Consensus 158 ~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~-~~v~~i~~~~-~ipvia~ 234 (306)
.+.++.+|+... .++.|-+. +..+ +..+.++|+|+|-+..... ..+ +.++.+++.. ++|++++
T Consensus 171 ~~av~~~R~~~~~~~IgVev~------t~ee-a~~A~~~gaD~I~ld~~~p-------~~l~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD------SLEE-ALAAAEAGADILQLDKFSP-------EELAELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC------CHHH-HHHHHHcCCCEEEECCCCH-------HHHHHHHHHHhccCCCceEEEE
Confidence 455666666542 22222222 2233 3334579999999875432 122 3334454443 6999999
Q ss_pred cCCCCHHHHHHHHHhhh
Q psy4398 235 GGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v 251 (306)
||| +++++.++.+.|+
T Consensus 237 GGI-~~~ni~~~~~~Gv 252 (272)
T cd01573 237 GGI-NIENAAAYAAAGA 252 (272)
T ss_pred CCC-CHHHHHHHHHcCC
Confidence 999 6899999988765
No 411
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=92.82 E-value=0.95 Score=39.42 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=58.9
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKI-PVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~i-pvia~GGI~s~~~~~~~l~~ 249 (306)
++..=+|. .+.++..++++.+.+.|+..+-++-++ +...+.++.+++..+. -+|+.|.|.+.++++.+++.
T Consensus 11 ~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~-------~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~a 82 (206)
T PRK09140 11 PLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNS-------PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADA 82 (206)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHc
Confidence 45555663 467889999999999999999997543 3456788999988865 48999999999999999987
Q ss_pred hh
Q psy4398 250 NC 251 (306)
Q Consensus 250 ~v 251 (306)
++
T Consensus 83 GA 84 (206)
T PRK09140 83 GG 84 (206)
T ss_pred CC
Confidence 54
No 412
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=92.80 E-value=0.68 Score=41.58 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=78.6
Q ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 97 CPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 97 ~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
.++.|-|++--+. ++.++..+++ .+|.+.+ |+.-|++..++.++ .+.++||..|-
T Consensus 105 ~~~~Gl~vvtEvm--~~~~~e~~~~----y~Dilqv--------------GARNMQNF~LLke~-----G~~~kPvLLKR 159 (286)
T COG2876 105 ADETGLPVVTEVM--DVRDVEAAAE----YADILQV--------------GARNMQNFALLKEV-----GRQNKPVLLKR 159 (286)
T ss_pred HHHcCCeeEEEec--CHHHHHHHHh----hhhHHHh--------------cccchhhhHHHHHh-----cccCCCeEEec
Confidence 3456778887764 3333333333 2444444 45556777665544 24589999999
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEccc---CCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGR---TKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~---~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
..+-+.+++...|+.+...|...+++--| +-+.......++..+..+++.+++|||+.
T Consensus 160 g~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLPVivD 220 (286)
T COG2876 160 GLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLPVIVD 220 (286)
T ss_pred CccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhcCCCEEEC
Confidence 98889999999999999999988887543 22222233468889999999999999975
No 413
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=92.79 E-value=0.94 Score=42.27 Aligned_cols=91 Identities=9% Similarity=-0.018 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcE
Q psy4398 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC--GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPV 231 (306)
Q Consensus 154 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~--G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipv 231 (306)
++.-.+.++.+......-+.+ +.|...++ .+-++.|.++ |+|.|++.--. .++. .-++.++.|++...-+.
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~~~d-~er~~~L~~a~~~~d~iviD~Ah---Ghs~-~~i~~ik~ir~~~p~~~ 152 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSSDND-LEKMTSILEAVPQLKFICLDVAN---GYSE-HFVEFVKLVREAFPEHT 152 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccCHHH-HHHHHHHHhcCCCCCEEEEECCC---CcHH-HHHHHHHHHHhhCCCCe
Confidence 343344454443333333344 44444444 4555666666 59999985322 2221 25688999999987677
Q ss_pred EEecCCCCHHHHHHHHHhhh
Q psy4398 232 IANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v 251 (306)
|..|.|-++++++++++.|+
T Consensus 153 viaGNV~T~e~a~~Li~aGA 172 (343)
T TIGR01305 153 IMAGNVVTGEMVEELILSGA 172 (343)
T ss_pred EEEecccCHHHHHHHHHcCC
Confidence 77899999999999999865
No 414
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=92.48 E-value=2.7 Score=36.84 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=77.2
Q ss_pred HHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEec
Q psy4398 158 CNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235 (306)
Q Consensus 158 ~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~G 235 (306)
.+.++++++.++ ..+.+-...+|+.++..++++.+++.++.+|- ++. .+.+++..+++++..++||.+-=
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~L~~~~~~pIa~dE 152 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWIE-------EPC-APDDLEGYAALRRRTGIPIAADE 152 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeEE-------CCC-CccCHHHHHHHHhhCCCCEEeCC
Confidence 677888888874 44555555578999999999999998877774 222 23468888999999999998855
Q ss_pred CCCCHHHHHHHHHhhhhhccccCCCC-Cc---hH-HHHHHHHHhcCCCCC
Q psy4398 236 GSKEIVDYGGVFSLNCAFLRNHYPVE-KL---PK-TILYAHCKYKRFEVP 280 (306)
Q Consensus 236 GI~s~~~~~~~l~~~v~vGrall~~p-~~---~~-~~l~~~~~~~g~~~~ 280 (306)
.+.+..+...+++... ...+.-+| .. .+ +.+.++.+++|++..
T Consensus 153 s~~~~~~~~~~~~~~~--~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~ 200 (229)
T cd00308 153 SVTTVDDALEALELGA--VDILQIKPTRVGGLTESRRAADLAEAFGIRVM 200 (229)
T ss_pred CCCCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCEEe
Confidence 5778888877666422 11111233 11 11 366778889998733
No 415
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=92.40 E-value=2.4 Score=40.07 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=60.0
Q ss_pred ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC-------CC-------C------------------------CC
Q psy4398 170 IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT-------KA-------E------------------------RP 211 (306)
Q Consensus 170 ~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~-------~~-------~------------------------~~ 211 (306)
-+.+..+....+.+.+.++.++++++|+..|.++--+ ++ . ..
T Consensus 125 ~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (351)
T cd04737 125 GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAA 204 (351)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhc
Confidence 3566666644455556677777777777766653210 00 0 00
Q ss_pred CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-------hhccccCCCC
Q psy4398 212 RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-------AFLRNHYPVE 261 (306)
Q Consensus 212 ~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-------~vGrall~~p 261 (306)
.....|+.++++++..++||+.- ||.++++++.+.+.|+ .-||.+...|
T Consensus 205 ~~~~~~~~l~~lr~~~~~PvivK-gv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~ 260 (351)
T cd04737 205 KQKLSPADIEFIAKISGLPVIVK-GIQSPEDADVAINAGADGIWVSNHGGRQLDGGP 260 (351)
T ss_pred cCCCCHHHHHHHHHHhCCcEEEe-cCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCc
Confidence 12347899999999999999976 5899999999998865 2366666555
No 416
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=92.39 E-value=2.1 Score=37.88 Aligned_cols=84 Identities=13% Similarity=-0.014 Sum_probs=61.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 103 KIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
.+++.|.+.+.++....++.+. .|+|.||+ |-|.+.. .+.+.+.++++.+++. +.|+.+=+|.+ +
T Consensus 22 ~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~---------RlD~l~~---~~~~~~~~~~~~l~~~-~~p~I~T~R~~-~ 87 (229)
T PRK01261 22 IVVESIFFKDIKEMKERFKTKVLSDKNLYEI---------RFDLFHD---HSIESEPEIISALNEM-DIDYIFTYRGV-D 87 (229)
T ss_pred EEEEEeCCCCHHHHHHHHHHhhcCCCCEEEE---------EeeccCC---CChHHHHHHHHHHhhc-CCCEEEEEcCC-C
Confidence 4777999999999887777666 59999999 4444422 3555667887777765 88999999943 2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEc
Q psy4398 182 EADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+ .++.+.+.+.++|++.+-
T Consensus 88 --~-~~~l~~a~~~~~d~vDIE 106 (229)
T PRK01261 88 --A-RKYYETAIDKMPPAVDLD 106 (229)
T ss_pred --H-HHHHHHHHhhCCCEEEEE
Confidence 2 356666666788999874
No 417
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=92.37 E-value=4.6 Score=37.04 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=48.0
Q ss_pred hcccccEEEEeccCCChHHHHHHHHHHHHcC-CcEEEEcccCC--CC-CC--C-CC-CcHHHHHHHHhhCCCcEEEecC
Q psy4398 166 SNLSIPVSCKIRVFHNEADTIALCKRLEACG-IIAIGVHGRTK--AE-RP--R-HR-NRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 166 ~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G-~d~i~v~~~~~--~~-~~--~-~p-~~~~~v~~i~~~~~ipvia~GG 236 (306)
+..+.|+.+-+. |.+.++..+.|+.++++| +|+|.+...-+ .. .+ . .+ ...+.++.+++.+++||+.=-.
T Consensus 88 ~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 88 EEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred hccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 344788888775 357788999999999999 99998843211 11 11 1 11 2357788888888999987433
No 418
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.34 E-value=1 Score=42.02 Aligned_cols=91 Identities=7% Similarity=-0.047 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcE
Q psy4398 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEA-CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPV 231 (306)
Q Consensus 154 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~-~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipv 231 (306)
++.-.+.++.++.....-+.| +.|...++...+.+.++. +|+|.|++.--. .++. .-++.++.|++.+ +++|
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~~d~er~~~L~~~~~g~D~iviD~Ah---Ghs~-~~i~~ik~ik~~~P~~~v 154 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSDADFEKTKQILALSPALNFICIDVAN---GYSE-HFVQFVAKAREAWPDKTI 154 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCHHHHHHHHHHHhcCCCCCEEEEECCC---CcHH-HHHHHHHHHHHhCCCCcE
Confidence 444455555555443323334 444555555444444442 699999985322 2221 2568899999998 5664
Q ss_pred EEecCCCCHHHHHHHHHhhh
Q psy4398 232 IANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v 251 (306)
..|.|-|.+.+++++.+|+
T Consensus 155 -IaGNV~T~e~a~~Li~aGA 173 (346)
T PRK05096 155 -CAGNVVTGEMVEELILSGA 173 (346)
T ss_pred -EEecccCHHHHHHHHHcCC
Confidence 5688999999999999865
No 419
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.25 E-value=4.7 Score=35.18 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=75.0
Q ss_pred ceEEEecCC----CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 103 KIILQIGTA----DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 103 p~ivql~g~----~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+-+|.... ++++..+.++.+.. |+.+++++ . .+.++++++.+++|+....+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~~ 64 (221)
T PRK01130 8 IVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGIIK 64 (221)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEEe
Confidence 455565533 34667777776654 88888873 0 35678888888899874443
Q ss_pred cC-CC--h--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 178 VF-HN--E--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 178 ~g-~~--~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.. ++ . ....+.++.+.++|+|.|.+...... ...+....++++.+++..++|++. ++.+.+++..+.+.|+
T Consensus 65 ~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~-~p~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~~~G~ 140 (221)
T PRK01130 65 RDYPDSEVYITPTLKEVDALAAAGADIIALDATLRP-RPDGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQKLGF 140 (221)
T ss_pred cCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHHcCC
Confidence 11 00 0 11235678889999998877543211 010012345667776645677774 5678999888777665
No 420
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=92.18 E-value=0.74 Score=41.24 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVEK 262 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p~ 262 (306)
+..++|+.++++|+++|.|-. ++.+-+ .+++.++++++.+++||+.-+.|.++.+..++...|+ ++ ++-=..
T Consensus 62 d~~~~A~~y~~~GA~aISVlT---e~~~F~-Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADav---LLI~~~ 134 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLT---DQSYFG-GSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAI---LLIVRI 134 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEc---CCCcCC-CCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEE---EeEHhh
Confidence 578999999999999997642 222222 3789999999999999999999999999999888765 21 111111
Q ss_pred c-h-H-HHHHHHHHhcCCC-CCcceehh
Q psy4398 263 L-P-K-TILYAHCKYKRFE-VPKYETVQ 286 (306)
Q Consensus 263 ~-~-~-~~l~~~~~~~g~~-~~~~~~~~ 286 (306)
+ + + ..+-+.....|++ +.+.|+..
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~ 162 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTED 162 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHH
Confidence 1 1 2 2677777888877 55555444
No 421
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=92.17 E-value=1.4 Score=41.12 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=62.9
Q ss_pred cCChHHHHHHHHHHHhccc-ccEEEEeccCC-ChHHHHHHHHHHHHcCCcEEEEcccCC--CCCCCCCCcH----HHHHH
Q psy4398 151 LSTPDIACNILTTLISNLS-IPVSCKIRVFH-NEADTIALCKRLEACGIIAIGVHGRTK--AERPRHRNRI----EMIRT 222 (306)
Q Consensus 151 ~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~-~~~~~~~~a~~l~~~G~d~i~v~~~~~--~~~~~~p~~~----~~v~~ 222 (306)
..+++.. +-++.+|+... .|+.+-+.... ...+..++.+..+..++|++.+|-... ...+.++.++ +.++.
T Consensus 94 ~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~ 172 (326)
T cd02811 94 LEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEE 172 (326)
T ss_pred ccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHH
Confidence 4467755 66677777664 88888776421 011344455556666788888764321 1112223344 56788
Q ss_pred HHhhCCCcEEE--ecCCCCHHHHHHHHHhhh
Q psy4398 223 LTQHLKIPVIA--NGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 223 i~~~~~ipvia--~GGI~s~~~~~~~l~~~v 251 (306)
+++.+++||+. +|--.+.++++.+.+.|+
T Consensus 173 l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gv 203 (326)
T cd02811 173 LVKALSVPVIVKEVGFGISRETAKRLADAGV 203 (326)
T ss_pred HHHhcCCCEEEEecCCCCCHHHHHHHHHcCC
Confidence 88888999998 354477899988888765
No 422
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.11 E-value=2.9 Score=39.10 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
+.+++.|++.+-|..+.. .++++++.+.+. +.|||.+-|..++++++.+++..
T Consensus 104 d~l~~~~v~~~KI~S~~~-------~n~~LL~~va~~-gkPvilstG~~t~~Ei~~Av~~i 156 (327)
T TIGR03586 104 DFLESLDVPAYKIASFEI-------TDLPLIRYVAKT-GKPIIMSTGIATLEEIQEAVEAC 156 (327)
T ss_pred HHHHHcCCCEEEECCccc-------cCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHHH
Confidence 456678899888865532 478899998865 89999999999999999988764
No 423
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.07 E-value=6.4 Score=35.70 Aligned_cols=117 Identities=12% Similarity=0.188 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+.+.+.+.|+.+++ |+..+-...--|-++. ..| ..-.+.-.++++.+.+..++|+..-+- +. .-+
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~--~s~----~G~g~~gl~~l~~~~~~~Gl~~~te~~---d~----~~~ 104 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSP--YSF----QGLGEEGLKILKEVGDKYNLPVVTEVM---DT----RDV 104 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCC--Ccc----CCcHHHHHHHHHHHHHHcCCCEEEeeC---Ch----hhH
Confidence 367888999998876 8776666543333211 111 111133344566666778999887665 22 233
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC-CHHHHHHHHHh
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK-EIVDYGGVFSL 249 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~-s~~~~~~~l~~ 249 (306)
+.+.+. +|.+-|-+++. .+.++++++. .++.||+..-|.. +++++..+.+.
T Consensus 105 ~~l~~~-vd~~kIga~~~-------~n~~LL~~~a-~~gkPV~lk~G~~~s~~e~~~A~e~ 156 (266)
T PRK13398 105 EEVADY-ADMLQIGSRNM-------QNFELLKEVG-KTKKPILLKRGMSATLEEWLYAAEY 156 (266)
T ss_pred HHHHHh-CCEEEECcccc-------cCHHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 344556 89999877653 3567888885 5689999999988 99999888875
No 424
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.02 E-value=1.4 Score=39.97 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=74.3
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+.|.|++--+. ++++...++ +.+|.+.| |+.++++.++ ++++. .++.||.+|-.
T Consensus 84 ~~~glpvvTeV~--~~~q~~~va----e~~DilQI--------------gAr~~rqtdL----L~a~~-~tgkpV~lKkG 138 (290)
T PLN03033 84 VAYDLPIVTDVH--ESSQCEAVG----KVADIIQI--------------PAFLCRQTDL----LVAAA-KTGKIINIKKG 138 (290)
T ss_pred HHHCCceEEeeC--CHHHHHHHH----hhCcEEee--------------CcHHHHHHHH----HHHHH-ccCCeEEeCCC
Confidence 345777776663 333333333 34688888 4455555554 44443 36899999999
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CCcHHHHHHHHhhCCCcEEE
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH-RNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p~~~~~v~~i~~~~~ipvia 233 (306)
...+++++...++.+...|-+-|.+.-|-..-.|.. ..++..+..+++ +++|||.
T Consensus 139 q~~t~~e~~~aaeki~~~GN~~viLcERG~tFgy~~lv~D~r~ip~mk~-~~lPVI~ 194 (290)
T PLN03033 139 QFCAPSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVA 194 (290)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHh-cCCCEEE
Confidence 888999999999999999999998876643223322 246667777774 6899985
No 425
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=91.98 E-value=2.9 Score=40.40 Aligned_cols=96 Identities=8% Similarity=-0.005 Sum_probs=66.7
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEE--EccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAID--INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~ve--ln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++++..+.. |.|.|- =|+..|.. .-+.+|.+.+.+.+++..+.++...
T Consensus 158 ~~RPL~gtiiKPklGLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f--------~p~~eRv~~~~~ai~~a~~eTG~~~ 229 (424)
T cd08208 158 HDRPIFFGVIKPNIGLPPGEFAELGYQSWLGGLDIAKDDEMLADVDW--------CPLEERAALLGKARRRAEAETGVPK 229 (424)
T ss_pred CCCCeeeeeecccccCCHHHHHHHHHHHHcCCcccccccccccCCCC--------CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5678888875 6789999998887765 667652 13433221 2345677788888888888887554
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+-++.+.+.|+.++.+.
T Consensus 230 ~ya~NiT~~~~em~~ra~~a~~~G~~~vmv~ 260 (424)
T cd08208 230 IYLANITDEVDRLMELHDVAVRNGANALLIN 260 (424)
T ss_pred eEEEEccCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 4333332467889999999999999988764
No 426
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=91.93 E-value=6.3 Score=34.34 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=65.2
Q ss_pred EEEecCCC-HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChH
Q psy4398 105 ILQIGTAD-PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA 183 (306)
Q Consensus 105 ivql~g~~-~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~ 183 (306)
.++|+|-. +++.. ...+.|+|.+-+.+..+++. + =.++.+.++.+.+...+ .+|.|-.. .+
T Consensus 4 ~vKICGi~~~eda~---~~~~~Gad~iGfI~~~~S~R-----~-----V~~~~a~~i~~~~~~~i-~~VgVf~~--~~-- 65 (210)
T PRK01222 4 RVKICGITTPEDAE---AAAELGADAIGFVFYPKSPR-----Y-----VSPEQAAELAAALPPFV-KVVGVFVN--AS-- 65 (210)
T ss_pred eEEECCCCcHHHHH---HHHHcCCCEEEEccCCCCCC-----c-----CCHHHHHHHHHhCCCCC-CEEEEEeC--CC--
Confidence 47888864 43322 22345999998865433321 1 24666677766654322 34444444 33
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHH
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~ 243 (306)
..++.+.+++.+.|.|.+|+.. ..++++.+++..+++||-+=.+.+..+.
T Consensus 66 -~~~i~~~~~~~~~d~vQLHg~e---------~~~~~~~l~~~~~~~iik~i~v~~~~~l 115 (210)
T PRK01222 66 -DEEIDEIVETVPLDLLQLHGDE---------TPEFCRQLKRRYGLPVIKALRVRSAGDL 115 (210)
T ss_pred -HHHHHHHHHhcCCCEEEECCCC---------CHHHHHHHHhhcCCcEEEEEecCCHHHH
Confidence 4456666778999999999732 3356677777666776655555444333
No 427
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=91.90 E-value=2.1 Score=38.51 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=75.4
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+.|.|++--+. ++++...++ +.+|.++| |+.++++.++ ++++.+ ++.||.+|-.
T Consensus 78 ~~~GlpvvTeV~--~~~~~~~v~----~~~DilQI--------------gArn~rn~~L----L~a~g~-t~kpV~lKrG 132 (264)
T PRK05198 78 ETFGVPVLTDVH--EPEQAAPVA----EVVDVLQI--------------PAFLCRQTDL----LVAAAK-TGKVVNIKKG 132 (264)
T ss_pred HHHCCceEEEeC--CHHHHHHHH----hhCcEEEE--------------CchhcchHHH----HHHHhc-cCCeEEecCC
Confidence 456778877663 333333333 35789888 4556666554 455443 5899999999
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CCcHHHHHHHHhhCCCcEEE
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH-RNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p~~~~~v~~i~~~~~ipvia 233 (306)
.+.+++++...++.+...|-.-|.+.-|-..-.|.. ..++..+..+++ .++|||.
T Consensus 133 ~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k~-~~lPVi~ 188 (264)
T PRK05198 133 QFLAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMRE-TGAPVIF 188 (264)
T ss_pred CcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHhh-CCCCEEE
Confidence 888899999999999999999998866543222322 246667777776 4599986
No 428
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=91.89 E-value=2.3 Score=40.70 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=31.9
Q ss_pred CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 215 NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 215 ~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+|+.++++++.+++|||.- ||.+.+|++.+++.|+
T Consensus 240 ~tW~~i~~lr~~~~~pvivK-gV~~~~dA~~a~~~G~ 275 (383)
T cd03332 240 LTWEDLAFLREWTDLPIVLK-GILHPDDARRAVEAGV 275 (383)
T ss_pred CCHHHHHHHHHhcCCCEEEe-cCCCHHHHHHHHHCCC
Confidence 57899999999999998865 7899999999999876
No 429
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=91.88 E-value=1.4 Score=36.62 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHH
Q psy4398 114 ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL 192 (306)
Q Consensus 114 ~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l 192 (306)
+...+.++.+.+ |++.|++-..-+.+.. .. ...+ +.++.+++..+.|+.+.+......+.....++.+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~----~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEE----AE---TDDK----EVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECccc----CC---Cccc----cHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 556666666665 8999888543222100 00 0011 4455556666889888887433222233446788
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecC
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGG 236 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GG 236 (306)
.++|+|+|.++...... .....+.++.+++.+ ++|++..-.
T Consensus 81 ~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~~~~~v~~~~~ 122 (200)
T cd04722 81 RAAGADGVEIHGAVGYL---AREDLELIRELREAVPDVKVVVKLS 122 (200)
T ss_pred HHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhcCCceEEEEEC
Confidence 99999999998653211 011356788999887 788776654
No 430
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.87 E-value=2.9 Score=36.30 Aligned_cols=118 Identities=12% Similarity=0.146 Sum_probs=66.2
Q ss_pred CCHHHHHHHHH---HHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAK---KVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~---~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
++.+++....+ .++ .|+|++-+-+-.|.. . =|.+.+.+++++.+ +.|+..=.. .....+..
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg---------~--iD~~~~~~Li~~a~---~~~~tFHRA-fD~~~d~~ 130 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDG---------E--IDEEALEELIEAAG---GMPVTFHRA-FDEVPDPE 130 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETTS---------S--B-HHHHHHHHHHHT---TSEEEE-GG-GGGSSTHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCC---------C--cCHHHHHHHHHhcC---CCeEEEeCc-HHHhCCHH
Confidence 56666655543 444 399999985443331 1 26677777777764 556665333 22223455
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~ 248 (306)
+-.+.+.+.|++.|--+|... .-..+++.++++.+.. ++.|++.|||+ .+++.++++
T Consensus 131 ~al~~L~~lG~~rVLTSGg~~----~a~~g~~~L~~lv~~a~~~i~Im~GgGv~-~~nv~~l~~ 189 (201)
T PF03932_consen 131 EALEQLIELGFDRVLTSGGAP----TALEGIENLKELVEQAKGRIEIMPGGGVR-AENVPELVE 189 (201)
T ss_dssp HHHHHHHHHT-SEEEESTTSS----STTTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHH
T ss_pred HHHHHHHhcCCCEEECCCCCC----CHHHHHHHHHHHHHHcCCCcEEEecCCCC-HHHHHHHHH
Confidence 666777788999997776531 1123567777665554 68899999987 455666655
No 431
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=91.85 E-value=5.2 Score=37.53 Aligned_cols=113 Identities=14% Similarity=0.268 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHhc-CCCEEEE----ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 112 DPERALEAAKKVEH-DVAAIDI----NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 112 ~~~~~~~aa~~~~~-g~d~vel----n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
+.+++.+.|+.+++ |++.+-- |=.+|... .+.| +.-.+++..+++..++|+..-+- +.
T Consensus 105 s~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf---~G~g-------~~gL~~L~~~~~~~Gl~v~tev~---d~---- 167 (335)
T PRK08673 105 SEEQILEIARAVKEAGAQILRGGAFKPRTSPYSF---QGLG-------EEGLKLLAEAREETGLPIVTEVM---DP---- 167 (335)
T ss_pred CHHHHHHHHHHHHHhchhhccCcEecCCCCCccc---cccc-------HHHHHHHHHHHHHcCCcEEEeeC---CH----
Confidence 57888999998875 7663221 11222211 1222 33445777888888999887666 22
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC-CHHHHHHHHHhh
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK-EIVDYGGVFSLN 250 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~-s~~~~~~~l~~~ 250 (306)
+-++.+.+. +|.+.|-++.. .++++++++.+ ++.||+..-|.. +++++..+.+..
T Consensus 168 ~~~~~l~~~-vd~lqIgAr~~-------~N~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i 223 (335)
T PRK08673 168 RDVELVAEY-VDILQIGARNM-------QNFDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYI 223 (335)
T ss_pred HHHHHHHHh-CCeEEECcccc-------cCHHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 223344456 89999977653 36778888875 589999999988 999998888763
No 432
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=91.59 E-value=1.9 Score=41.21 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc--ccC----CCCCCCCCCcHHHH----HHH
Q psy4398 155 DIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH--GRT----KAERPRHRNRIEMI----RTL 223 (306)
Q Consensus 155 ~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~--~~~----~~~~~~~p~~~~~v----~~i 223 (306)
+...+-++.+++.. ++|+++-+..+.+.+++.++++.++++|+|+|.+. +.. +.....--.+.+.+ +.+
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~V 177 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWI 177 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHH
Confidence 33333356666666 67999988654678999999999999999999862 221 11110000133444 566
Q ss_pred HhhCCCcEEEe--cCCCCHHHHHH
Q psy4398 224 TQHLKIPVIAN--GGSKEIVDYGG 245 (306)
Q Consensus 224 ~~~~~ipvia~--GGI~s~~~~~~ 245 (306)
++.+++||+.= -.+.++....+
T Consensus 178 k~~~~iPv~vKLsPn~t~i~~ia~ 201 (385)
T PLN02495 178 NAKATVPVWAKMTPNITDITQPAR 201 (385)
T ss_pred HHhhcCceEEEeCCChhhHHHHHH
Confidence 77778998764 34445544444
No 433
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=91.58 E-value=1.6 Score=30.48 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=46.2
Q ss_pred HHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 161 LTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 161 v~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
++++++.+ ++.+.+-...+|+.+++.++++.+++. ..+ +++. .+.+++..+++++.+++||.+
T Consensus 2 i~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~--~~i-------EeP~-~~~d~~~~~~l~~~~~~pia~ 66 (67)
T PF01188_consen 2 IRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY--EWI-------EEPL-PPDDLDGLAELRQQTSVPIAA 66 (67)
T ss_dssp HHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG--SEE-------ESSS-STTSHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh--hee-------ecCC-CCCCHHHHHHHHHhCCCCEEe
Confidence 56777776 456666666689999999999999983 333 2222 235789999999999999975
No 434
>PRK07534 methionine synthase I; Validated
Probab=91.58 E-value=2.4 Score=39.80 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=59.7
Q ss_pred HcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec---------CCCHHHHHHHHHH
Q psy4398 52 DYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG---------TADPERALEAAKK 122 (306)
Q Consensus 52 ~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~---------g~~~~~~~~aa~~ 122 (306)
+.|++++.-|++..-.-..... ...++.+.|+++|+. |.+.++..+++..
T Consensus 142 ~~gvD~l~~ET~p~l~E~~a~~---------------------~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~ 200 (336)
T PRK07534 142 AGGADVLWVETISAPEEIRAAA---------------------EAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADLVEK 200 (336)
T ss_pred hCCCCEEEEeccCCHHHHHHHH---------------------HHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHHHHh
Confidence 6789999999886432111100 011112457777763 3334444444332
Q ss_pred HhcCCCEEEEccCC-CccccccCCccccccCChHHH-HHHHHHHHhcccccEEEEeccCC------------ChHHHHHH
Q psy4398 123 VEHDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIA-CNILTTLISNLSIPVSCKIRVFH------------NEADTIAL 188 (306)
Q Consensus 123 ~~~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~-~eiv~~v~~~~~~pv~vKir~g~------------~~~~~~~~ 188 (306)
...++++|-+||+. |. .+ ..+++.....++.|+.|+-..|. +.+...++
T Consensus 201 ~~~~~~avGvNC~~gp~-----------------~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~~~~~~~~~~p~~~~~~ 263 (336)
T PRK07534 201 LGEPPLAFGANCGVGAS-----------------DLLRTVLGFTAQGPERPIIAKGNAGIPKYVDGHIHYDGTPELMAEY 263 (336)
T ss_pred cCCCceEEEecCCCCHH-----------------HHHHHHHHHHHhcCCCeEEEEcCCCCcccCCCccccCCCHHHHHHH
Confidence 22245999999886 43 22 22233334444678888766542 22335556
Q ss_pred HHHHHHcCCcEEE
Q psy4398 189 CKRLEACGIIAIG 201 (306)
Q Consensus 189 a~~l~~~G~d~i~ 201 (306)
++.+.+.|+..|-
T Consensus 264 ~~~~~~~Ga~iIG 276 (336)
T PRK07534 264 AVLARDAGARIIG 276 (336)
T ss_pred HHHHHHcCCcEEe
Confidence 6666666666654
No 435
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=91.56 E-value=0.89 Score=38.17 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
|......-.+.+++.++|+|-+-+. ..-..++++.+++++||||.|=|.+.+++++++++|+
T Consensus 106 DS~Al~~~~~~i~~~~pD~iEvLPG---------v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA 167 (181)
T COG1954 106 DSIALEKGIKQIEKSEPDFIEVLPG---------VMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGA 167 (181)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCc---------ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCc
Confidence 3344556667778889999987532 2237889999999999999999999999999999976
No 436
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.54 E-value=5.8 Score=35.89 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCCceEEEec---CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccE
Q psy4398 99 REKNKIILQIG---TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPV 172 (306)
Q Consensus 99 ~~~~p~ivql~---g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv 172 (306)
+.|..+.+++. ..+++.+.+.++.+.+ |++.|-|- |-.|. -.|+.+.++++++++.++ +|+
T Consensus 120 ~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~----------DT~G~---~~P~~v~~lv~~l~~~~~~~~~i 186 (266)
T cd07944 120 EKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV----------DSFGS---MYPEDIKRIISLLRSNLDKDIKL 186 (266)
T ss_pred HCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe----------cCCCC---CCHHHHHHHHHHHHHhcCCCceE
Confidence 34556666653 4678889999888765 89987772 44553 379999999999998876 666
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
.+=.- .+..-...-+..+.++|++.|..+
T Consensus 187 ~~H~H--n~~Gla~AN~laA~~aGa~~vd~s 215 (266)
T cd07944 187 GFHAH--NNLQLALANTLEAIELGVEIIDAT 215 (266)
T ss_pred EEEeC--CCccHHHHHHHHHHHcCCCEEEEe
Confidence 55544 343334444455567999998865
No 437
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=91.43 E-value=4 Score=38.74 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=76.8
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= ++..+. | .-+.+|...+.+.+++..+.++...
T Consensus 125 ~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~-------~-~p~~eRv~~~~~a~~~a~~eTG~~~ 196 (366)
T cd08148 125 YGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIKDDETLTDQP-------F-CPLRDRITEVAAALDRVQEETGEKK 196 (366)
T ss_pred CCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccccccccCCCC-------C-CcHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5779988874 7789999999887765 7776522 233222 1 2344566777777888777776554
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh--CCCcEEEe
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH--LKIPVIAN 234 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~--~~ipvia~ 234 (306)
..-..+..+.++..+=++.+.+.|+.++.+.... .-+..+..+++. .++||.+.
T Consensus 197 ~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~--------~G~~~l~~l~~~~~~~l~IhaH 252 (366)
T cd08148 197 LYAVNVTAGTFEIIERAERALELGANMLMVDVLT--------AGFSALQALAEDFEIDLPIHVH 252 (366)
T ss_pred eEEEEccCCHHHHHHHHHHHHHhCCCEEEEeccc--------cchHHHHHHHHhCcCCcEEEec
Confidence 4333332555789999999999999998875432 233445555552 35666553
No 438
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=91.35 E-value=4.9 Score=34.30 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=74.7
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEE--EeccCC
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSC--KIRVFH 180 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~v--Kir~g~ 180 (306)
+++-|--.++++..+.++.+.++++.||++... - . .+| .+.++.+++. .+.|+.+ |+.
T Consensus 3 ~~~a~d~~~~~~~~~~~~~l~~~i~~ieig~~~--~--~--~~g----------~~~i~~i~~~~~~~~i~~~~~v~--- 63 (202)
T cd04726 3 LQVALDLLDLEEALELAKKVPDGVDIIEAGTPL--I--K--SEG----------MEAVRALREAFPDKIIVADLKTA--- 63 (202)
T ss_pred eEEEEcCCCHHHHHHHHHHhhhcCCEEEcCCHH--H--H--HhC----------HHHHHHHHHHCCCCEEEEEEEec---
Confidence 445555567788888888887779999994221 0 0 111 4567777765 3677776 444
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH-HHHHHHHhhCCCcEEEe-cCCCCHHHHHHHHHhhh
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI-EMIRTLTQHLKIPVIAN-GGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~-~~v~~i~~~~~ipvia~-GGI~s~~~~~~~l~~~v 251 (306)
+.. ..+++.+.++|+|.+++|+... +... ++++.+++ .+++++.. =+..|.++...+...++
T Consensus 64 ~~~--~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~ 127 (202)
T cd04726 64 DAG--ALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGV 127 (202)
T ss_pred ccc--HHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCC
Confidence 111 2456888899999999997531 1112 34455553 47777653 56677887777666443
No 439
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=91.33 E-value=9.8 Score=33.60 Aligned_cols=133 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEeccCCChHHHH--
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIRVFHNEADTI-- 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~g~~~~~~~-- 186 (306)
++++..+.+.+ .+.|+|.+-+|... ..+.+.+..+..++ .-+.-+.|=+=..++.++..
T Consensus 66 ~~t~~~~i~~~--~~~gad~itvH~~a----------------g~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~ 127 (230)
T PRK00230 66 PNTVAKAVRAL--AKLGVDMVNVHASG----------------GPRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAEL 127 (230)
T ss_pred cccHHHHHHHH--HHcCCCEEEEcccC----------------CHHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhC
Q ss_pred -----------HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHH-----------HH
Q psy4398 187 -----------ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIV-----------DY 243 (306)
Q Consensus 187 -----------~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~-----------~~ 243 (306)
.+++...+.|+|++.+ .......+++.. .-.++.++||+ ++ +.
T Consensus 128 ~~~~~~~~~v~~~a~~a~~~g~dgvv~-------------~~~~~~~ir~~~~~~~~~v~pGI~-~~g~~~~dq~~~~~~ 193 (230)
T PRK00230 128 GINLSLEEQVLRLAKLAQEAGLDGVVC-------------SAQEAAAIREATGPDFLLVTPGIR-PAGSDAGDQKRVMTP 193 (230)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCeEEEe-------------ChHHHHHHHhhcCCceEEEcCCcC-CCCCCcchHHHHhCH
Q ss_pred HHHHHhhh---hhccccCCCCCchHH--HHHHHHHh
Q psy4398 244 GGVFSLNC---AFLRNHYPVEKLPKT--ILYAHCKY 274 (306)
Q Consensus 244 ~~~l~~~v---~vGrall~~p~~~~~--~l~~~~~~ 274 (306)
.++++.++ .+||+++..+.-.+. .+.+-+..
T Consensus 194 ~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~~ 229 (230)
T PRK00230 194 AQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIAG 229 (230)
T ss_pred HHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhhc
No 440
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=91.33 E-value=3.2 Score=37.34 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=66.9
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc-EEEEeccC---CChHHHHHHH-HHH
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP-VSCKIRVF---HNEADTIALC-KRL 192 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g---~~~~~~~~~a-~~l 192 (306)
.|+.+++ |+|.|= .|....... -++-....-..+.....+++|++.++.| |.+-+.-| .+.++.++-+ +.+
T Consensus 24 sA~l~e~aG~d~i~--vGds~~~~~-lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~ 100 (254)
T cd06557 24 TAKLADEAGVDVIL--VGDSLGMVV-LGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLM 100 (254)
T ss_pred HHHHHHHcCCCEEE--ECHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHH
Confidence 3455554 999994 342221111 1221122235566777788888888888 66666522 2356655554 555
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE-----------EecCCC----CHHHHHHHHHh
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI-----------ANGGSK----EIVDYGGVFSL 249 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi-----------a~GGI~----s~~~~~~~l~~ 249 (306)
+++|+++|.+-+.. ...+.++.+.++ ++||+ ..||.. +.+.++++++.
T Consensus 101 ~~aGa~aVkiEd~~--------~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~r 163 (254)
T cd06557 101 KEAGADAVKLEGGA--------EVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLED 163 (254)
T ss_pred HHhCCeEEEEcCcH--------HHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCCHHHHHHHHHH
Confidence 55999999997631 122344444432 79988 456532 45446666654
No 441
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=91.30 E-value=5.5 Score=36.17 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=59.9
Q ss_pred CCCCceEEEec-----CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 99 REKNKIILQIG-----TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 99 ~~~~p~ivql~-----g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
+.|..+.+.+. ..+++.+.+.++.+.+ |+|.|-|- |-.|.. .|+.+.++++.+++.+++|+
T Consensus 129 ~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~----------DT~G~~---~P~~v~~lv~~l~~~~~~~l 195 (275)
T cd07937 129 KAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK----------DMAGLL---TPYAAYELVKALKKEVGLPI 195 (275)
T ss_pred HCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc----------CCCCCC---CHHHHHHHHHHHHHhCCCeE
Confidence 34544444442 3567888888887765 99988772 445543 59999999999999887666
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.+=.- .+..-...-+-.+.++|++.|..+-
T Consensus 196 ~~H~H--nd~GlA~aN~laA~~aGa~~vd~sv 225 (275)
T cd07937 196 HLHTH--DTSGLAVATYLAAAEAGVDIVDTAI 225 (275)
T ss_pred EEEec--CCCChHHHHHHHHHHhCCCEEEEec
Confidence 55444 3333334444444568999998653
No 442
>KOG3111|consensus
Probab=91.25 E-value=2.9 Score=35.89 Aligned_cols=143 Identities=9% Similarity=0.057 Sum_probs=79.7
Q ss_pred ceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 103 KIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
.+..+|...+-...++-.+++ ..|+|-+-+..- -+.+..+.-+---+++++|+..+.+-+.-+- .-
T Consensus 6 ~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVM-----------Dg~FVpNiT~G~pvV~slR~~~~~~~ffD~H--mM 72 (224)
T KOG3111|consen 6 KIAPSILSSDFANLAAECKKMLDAGADWLHLDVM-----------DGHFVPNITFGPPVVESLRKHTGADPFFDVH--MM 72 (224)
T ss_pred eechhhhccchHHHHHHHHHHHHcCCCeEEEeee-----------cccccCCcccchHHHHHHHhccCCCcceeEE--Ee
Confidence 344555555544444433434 459998777532 1112222222234788888887766333333 11
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccC--------------------------C-------------------CCCCCCC--
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRT--------------------------K-------------------AERPRHR-- 214 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~--------------------------~-------------------~~~~~~p-- 214 (306)
.++..+++..+.++|++.+++|--. . +.++.+.
T Consensus 73 V~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkF 152 (224)
T KOG3111|consen 73 VENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKF 152 (224)
T ss_pred ecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhh
Confidence 2344566677777888888776311 0 1111111
Q ss_pred --CcHHHHHHHHhhCCCcEE-EecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 215 --NRIEMIRTLTQHLKIPVI-ANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 215 --~~~~~v~~i~~~~~ipvi-a~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.-+.-++.+|+...-+.| .-||+. ++++..+.++|+ ..|++.+.
T Consensus 153 me~mm~KV~~lR~kyp~l~ievDGGv~-~~ti~~~a~AGAN~iVaGsavf~ 202 (224)
T KOG3111|consen 153 MEDMMPKVEWLREKYPNLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVFG 202 (224)
T ss_pred HHHHHHHHHHHHHhCCCceEEecCCcC-cchHHHHHHcCCCEEEecceeec
Confidence 124456777877754555 778876 677777777654 88999886
No 443
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.21 E-value=7.9 Score=36.57 Aligned_cols=114 Identities=15% Similarity=0.207 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHhc-CCCEEEE----ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 112 DPERALEAAKKVEH-DVAAIDI----NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 112 ~~~~~~~aa~~~~~-g~d~vel----n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
+.++..+.|+.+++ |+..+-= |=.+|..+ ..--+.-.++++++++..++|+..-+- +.+ .+
T Consensus 113 s~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf----------~G~g~~gl~~L~~~~~e~Gl~~~tev~---d~~-~v 178 (352)
T PRK13396 113 NEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAF----------QGHGESALELLAAAREATGLGIITEVM---DAA-DL 178 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeeecCCCCCccc----------CCchHHHHHHHHHHHHHcCCcEEEeeC---CHH-HH
Confidence 46788888888875 6554331 22233221 111245577888889999999886665 322 23
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC-CHHHHHHHHHhhh
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK-EIVDYGGVFSLNC 251 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~-s~~~~~~~l~~~v 251 (306)
+.+.+. +|.+.|-++.. .|+++++++.+ ++.||+..-|.. |++++..+++...
T Consensus 179 ---~~~~~~-~d~lqIga~~~-------~n~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~ 232 (352)
T PRK13396 179 ---EKIAEV-ADVIQVGARNM-------QNFSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYIL 232 (352)
T ss_pred ---HHHHhh-CCeEEECcccc-------cCHHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 333445 89999977653 36788888885 489999999999 9999999888743
No 444
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.00 E-value=2 Score=39.23 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH-HHHHHHHhh---CCCcE
Q psy4398 157 ACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI-EMIRTLTQH---LKIPV 231 (306)
Q Consensus 157 ~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~-~~v~~i~~~---~~ipv 231 (306)
+.+.++.+|+.. ..+|.|-+. ..+-+..+.++|+|.|.+...+ |..+ +.++.+++. -++.+
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~-------~leea~~a~~agaDiI~LDn~~-------~e~l~~~v~~l~~~~~~~~~~l 234 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVE-------SLEDALKAAKAGADIIMLDNMT-------PEEIREVIEALKREGLRERVKI 234 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeC-------CHHHHHHHHHcCcCEEEECCCC-------HHHHHHHHHHHHhcCcCCCEEE
Confidence 455566666544 355666666 3444555567999999887653 2222 223334332 25789
Q ss_pred EEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 232 IANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.++||| ++++++++.+.|+ .+|...+
T Consensus 235 eaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 235 EVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred EEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 999999 6999999988876 5555444
No 445
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=90.98 E-value=3.6 Score=36.23 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=62.5
Q ss_pred CCCCceEEEec---CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEE
Q psy4398 99 REKNKIILQIG---TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVS 173 (306)
Q Consensus 99 ~~~~p~ivql~---g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~ 173 (306)
+.+..+.+++- ..+++.+.+.++.+.+ |+|.|-|- |..|. -.|..+.++++.+++.++ +|+.
T Consensus 119 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~----------Dt~G~---~~P~~v~~lv~~~~~~~~~~~l~ 185 (237)
T PF00682_consen 119 ELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA----------DTVGI---MTPEDVAELVRALREALPDIPLG 185 (237)
T ss_dssp HTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE----------ETTS----S-HHHHHHHHHHHHHHSTTSEEE
T ss_pred hcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee----------CccCC---cCHHHHHHHHHHHHHhccCCeEE
Confidence 34555666653 4578999999998875 99999883 44453 379999999999999987 7777
Q ss_pred EEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 174 CKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 174 vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
+-.. .+..-...-+-...++|++.|..+-
T Consensus 186 ~H~H--nd~Gla~An~laA~~aGa~~id~t~ 214 (237)
T PF00682_consen 186 FHAH--NDLGLAVANALAALEAGADRIDGTL 214 (237)
T ss_dssp EEEB--BTTS-HHHHHHHHHHTT-SEEEEBG
T ss_pred EEec--CCccchhHHHHHHHHcCCCEEEccC
Confidence 7777 3433344445555679999998753
No 446
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=90.93 E-value=1.4 Score=40.28 Aligned_cols=62 Identities=10% Similarity=0.115 Sum_probs=37.1
Q ss_pred CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 112 DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 112 ~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
+++...+-|. .+++|+|.|||+.-+-.+... . -...+..+.+..+++++++..++||+|-..
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~--~--v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~ 98 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAA--E--VSVEEELDRVIPVVEAIAQRFEVWISVDTS 98 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCC--C--CCHHHHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 4555554444 446799999998665322110 0 011223345677888888777888887655
No 447
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=90.83 E-value=4.7 Score=36.01 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=55.7
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-ChHHHHHHHHHHHHcCC
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-NEADTIALCKRLEACGI 197 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-~~~~~~~~a~~l~~~G~ 197 (306)
|+.++. |||++=+-=+.-.. ..++-..-.-..+...+.++.|...+..|+++-+..|. +.++..+.++.+.++|+
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~---s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAA---SLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHH---hcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 455554 99998884221110 00111111124466777788888888999999998754 55678888999999999
Q ss_pred cEEEEcccC
Q psy4398 198 IAIGVHGRT 206 (306)
Q Consensus 198 d~i~v~~~~ 206 (306)
++|++-+..
T Consensus 99 ~gv~iED~~ 107 (243)
T cd00377 99 AGIHIEDQV 107 (243)
T ss_pred EEEEEecCC
Confidence 999995543
No 448
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.65 E-value=5.3 Score=35.54 Aligned_cols=153 Identities=10% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C--CChHHHHHHHHH
Q psy4398 117 LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F--HNEADTIALCKR 191 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g--~~~~~~~~~a~~ 191 (306)
.+.++.+.+ |++.|.+-++... ......++.......+.+.+.++..++. +..+.+-+.. . .+.+...++++.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G~~v~~~~~~~~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASE-THSRKNLNKSREEDLENAEEAIEAAKEA-GLEVEGSLEDAFGCKTDPEYVLEVAKA 154 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeecCCCCCHHHHHHHHHH
Q ss_pred HHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEec----CCCCHHHHHHHHHhhh--------hhccccC
Q psy4398 192 LEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANG----GSKEIVDYGGVFSLNC--------AFLRNHY 258 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~G----GI~s~~~~~~~l~~~v--------~vGrall 258 (306)
+.+.|++.|.+.+. .+...+..-.+++..+++.++ +|+-..+ |.. ...+..+++.|+ .+|
T Consensus 155 ~~~~g~~~i~l~Dt--~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla-~an~laA~~aG~~~id~s~~G~G---- 227 (265)
T cd03174 155 LEEAGADEISLKDT--VGLATPEEVAELVKALREALPDVPLGLHTHNTLGLA-VANSLAALEAGADRVDGSVNGLG---- 227 (265)
T ss_pred HHHcCCCEEEechh--cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChH-HHHHHHHHHcCCCEEEecccccc----
Q ss_pred CCC-CchHHHHHHHHHhcCCC
Q psy4398 259 PVE-KLPKTILYAHCKYKRFE 278 (306)
Q Consensus 259 ~~p-~~~~~~l~~~~~~~g~~ 278 (306)
... ..+...+-.+++.+|+.
T Consensus 228 ~~~Gn~~~e~~~~~l~~~~~~ 248 (265)
T cd03174 228 ERAGNAATEDLVAALEGLGID 248 (265)
T ss_pred ccccCccHHHHHHHHHhcCCC
No 449
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.61 E-value=2.5 Score=38.81 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=54.7
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEE
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVI 232 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvi 232 (306)
+.+.++++|+... .+|.|-++ ..+-++.+.++|+|.|.+...+. +.++++.+.+ ++.+.
T Consensus 183 i~~av~~~r~~~~~~~kIeVEv~-------tleea~~a~~agaDiImLDnmsp----------e~l~~av~~~~~~~~le 245 (290)
T PRK06559 183 VQKAIAQARAYAPFVKMVEVEVE-------SLAAAEEAAAAGADIIMLDNMSL----------EQIEQAITLIAGRSRIE 245 (290)
T ss_pred HHHHHHHHHHhCCCCCeEEEECC-------CHHHHHHHHHcCCCEEEECCCCH----------HHHHHHHHHhcCceEEE
Confidence 3456666666653 44555554 33555556679999999976532 3333333333 57899
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
++|||+ ++++.+..+.|+ ++|..-+
T Consensus 246 aSGGI~-~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 246 CSGNID-MTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred EECCCC-HHHHHHHHhcCCCEEEeCcccc
Confidence 999986 888999888876 6665444
No 450
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=90.55 E-value=17 Score=35.69 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
..++++..+. ++. +.|.|+||-. .++++ ++.+++.. +++++--++.... .+
T Consensus 315 ~~~~~~i~~i---~~~~~lD~vQLHG~----------------e~~~~----~~~l~~~~~~~~~iikai~v~~~-~~-- 368 (454)
T PRK09427 315 NADIEDIVDI---AKQLSLAAVQLHGD----------------EDQAY----IDALREALPKTCQIWKAISVGDT-LP-- 368 (454)
T ss_pred CCCHHHHHHH---HHHcCCCEEEeCCC----------------CCHHH----HHHHHhhcCCCCeEEEEeecCch-hh--
Confidence 4455555543 443 7899999832 23444 34444433 2455544553211 11
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p 261 (306)
..+..++|++.+... .++...+.+|..+... .+.|++..||++ +++..+++.. ++-+.+++=..|
T Consensus 369 ----~~~~~~~d~~LlDs~--~GGtG~~~DW~~l~~~---~~~p~iLAGGL~-peNV~~ai~~~P~gVDVsSGVE~~p 436 (454)
T PRK09427 369 ----ARDLQHVDRYLLDNG--QGGTGQTFDWSLLPGQ---SLDNVLLAGGLN-PDNCQQAAQLGCAGLDFNSGVESAP 436 (454)
T ss_pred ----hhhhcCCCEEEEcCC--CCCCCCccChHHhhhc---ccCCEEEECCCC-HHHHHHHHhcCCCEEEeCCcccCCC
Confidence 112346899988752 2222224578766532 267999999987 6777666542 555555544334
No 451
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=90.50 E-value=3.7 Score=40.97 Aligned_cols=176 Identities=12% Similarity=0.144 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc-EEEEeccCCChHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP-VSCKIRVFHNEADTIAL 188 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g~~~~~~~~~ 188 (306)
.+++...+.++.+.+ |+|.|.|- |-.|. -.|..+.++++.+++.++.+ |.+=+- .|..-...-
T Consensus 151 ~~~~~l~~~~~~a~~aGad~i~i~----------DTvG~---~~P~~v~~li~~l~~~~~~~~i~vH~H--ND~GlAvAN 215 (526)
T TIGR00977 151 ANPEYALATLATAQQAGADWLVLC----------DTNGG---TLPHEISEITTKVKRSLKQPQLGIHAH--NDSGTAVAN 215 (526)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEe----------cCCCC---cCHHHHHHHHHHHHHhCCCCEEEEEEC--CCCChHHHH
Confidence 467777777777654 88887662 33443 36889999999998887643 555555 333334444
Q ss_pred HHHHHHcCCcEEEEc--ccC-C---------------CCCCC--CCCcHHHHHHHHh----hC------CCcEEEecCCC
Q psy4398 189 CKRLEACGIIAIGVH--GRT-K---------------AERPR--HRNRIEMIRTLTQ----HL------KIPVIANGGSK 238 (306)
Q Consensus 189 a~~l~~~G~d~i~v~--~~~-~---------------~~~~~--~p~~~~~v~~i~~----~~------~ipvia~GGI~ 238 (306)
+-.+.++||+.|..+ |.- + ...+. ...+++.+..+.+ .+ +.|+++.. ++
T Consensus 216 slaAv~AGA~~Vd~TinGiGERaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~-aF 294 (526)
T TIGR00977 216 SLLAVEAGATMVQGTINGYGERCGNANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRS-AF 294 (526)
T ss_pred HHHHHHhCCCEEEEecccccCccCCCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcc-ee
Confidence 445567999999864 210 0 01111 1245555444443 22 24443321 11
Q ss_pred CH---HHHHHHHHhh-----h---hhccc--cCCCCCchHHHHHHHHHhcCCCCCcceehhhccceeeEEEE--cCcccc
Q psy4398 239 EI---VDYGGVFSLN-----C---AFLRN--HYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTV--NGKQYT 303 (306)
Q Consensus 239 s~---~~~~~~l~~~-----v---~vGra--ll~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 303 (306)
+- -+...+++.- + .+|+. +.-+..-.+..+..+|++.||+++.. ..++++.++..-++ +|++++
T Consensus 295 ~h~sGiH~dgi~k~~~~Ye~~~Pe~vG~~~~i~lg~~SG~~~v~~~l~~~g~~l~~~-~~~~~~~~~~vk~~~~~g~~~~ 373 (526)
T TIGR00977 295 AHKGGVHVSAVQRNPFTYEHIAPELVGNERRIVVSELAGLSNVLSKAKEFGIEIDRQ-SPACRTILAKIKELEQQGYHFE 373 (526)
T ss_pred eeeccccHHHHhCCccccccCCHHHcCCccEEEEecccCHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHHHHHCCcEEe
Confidence 11 1122223220 0 44543 12123333448899999999998764 34455555555543 566665
No 452
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=90.48 E-value=1.7 Score=38.32 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCCCceEEEecC--------CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 98 PREKNKIILQIGT--------ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 98 ~~~~~p~ivql~g--------~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
++.+.|+++...- .+.+...++++.+.+ |+|.|-++.. .+.+. ++.+.+.+
T Consensus 119 ~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~----------------~~~~~----~~~i~~~~ 178 (235)
T cd00958 119 HKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT----------------GDAES----FKEVVEGC 178 (235)
T ss_pred HHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC----------------CCHHH----HHHHHhcC
Confidence 3456777777643 245666776666654 9999888511 13344 44445556
Q ss_pred cccEEEEeccCC---ChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 169 SIPVSCKIRVFH---NEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 169 ~~pv~vKir~g~---~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
.+|+ .+..|+ +.++..+.++.+.++|++++.+.
T Consensus 179 ~~pv--v~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 179 PVPV--VIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred CCCE--EEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 6775 444443 56678888999999999999764
No 453
>KOG4013|consensus
Probab=90.48 E-value=1.7 Score=37.24 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=67.2
Q ss_pred HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--CC---ChHH---HHH
Q psy4398 117 LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--FH---NEAD---TIA 187 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g~---~~~~---~~~ 187 (306)
.+.|..+++ |+|.||| ++.= +-|+. .|. .-+++-+++...+|+.+-+|. |. +.++ ..+
T Consensus 19 ~eSA~nAe~GGAdRiEl-CSaL-------~eGGl---TPS--vG~l~~~k~~~~iP~ycMiRpR~GDFvYsd~Em~a~~~ 85 (255)
T KOG4013|consen 19 LESAENAEAGGADRIEL-CSAL-------QEGGL---TPS--VGFLSILKYKYPIPLYCMIRPRAGDFVYSDDEMAANME 85 (255)
T ss_pred HHHHHhHhhcCccHhHH-hhhh-------ccCCC---CCc--chhhhhhhcccccceEEEEecCCCCcccchHHHHHHHH
Confidence 455666776 8999999 2210 11111 111 124566677888999999986 31 2233 344
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~ 248 (306)
=.+.+.++|+|++++-+-+.++. .+.+....+-... ..||-..--+.-..|+...++
T Consensus 86 Dv~llk~~GAdGfVFGaLt~dgs----id~~~C~si~~~~rplPVTFHRAfD~~~D~k~~lE 143 (255)
T KOG4013|consen 86 DVELLKKAGADGFVFGALTSDGS----IDRTSCQSIIETARPLPVTFHRAFDVAYDWKTCLE 143 (255)
T ss_pred HHHHHHHcCCCceEEeecCCCCC----cCHHHHHHHHHhcCCCceeeeeehhhhcCHHHHHH
Confidence 55778899999999876655432 3445555555544 567766655433335544444
No 454
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=90.38 E-value=5.8 Score=38.24 Aligned_cols=96 Identities=9% Similarity=0.009 Sum_probs=67.0
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++++..+.. |.|.|-= |+..+.. .-+.+|...+.+.+++..+.++...
T Consensus 132 ~~RPL~~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~ 203 (407)
T PRK09549 132 HDRPLLMSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENAL--------TPFEKRIVAGKEVLQEVYETTGHKT 203 (407)
T ss_pred CCCceEEEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCC--------cCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5678988875 6789999999887765 6776532 3433221 2344567777888888888887655
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+-++.+.+.|+.++.+.
T Consensus 204 ~y~~NiT~~~~em~~ra~~a~~~G~~~~m~~ 234 (407)
T PRK09549 204 LYAVNLTGRTFELKEKAKRAAEAGADALLFN 234 (407)
T ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCeEEEe
Confidence 4444433455778888999999999998764
No 455
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=90.37 E-value=2.6 Score=37.64 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-------CCChHHH
Q psy4398 114 ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-------FHNEADT 185 (306)
Q Consensus 114 ~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-------g~~~~~~ 185 (306)
+.+.+..+.+++ ||+.|||+-|+ +.-..+.-.++|+.+++. +.-+..-+.. ..+.+..
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGt-------------i~l~~~~r~~~I~~~~~~-Gf~v~~EvG~K~~~~~~~~~~~~~ 149 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGT-------------IDLPEEERLRLIRKAKEE-GFKVLSEVGKKDPESDFSLDPEEL 149 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SS-------------S---HHHHHHHHHHHCCT-TSEEEEEES-SSHHHHTT--CCHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCc-------------eeCCHHHHHHHHHHHHHC-CCEEeecccCCCchhcccCCHHHH
Confidence 456666677766 99999997543 222344455667766543 3333332322 1234568
Q ss_pred HHHHHHHHHcCCcEEEEcccCCC--CCC--CCCCcHHHHHHHHhhCC
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKA--ERP--RHRNRIEMIRTLTQHLK 228 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~--~~~--~~p~~~~~v~~i~~~~~ 228 (306)
++.++...++||+.|++-+|... +-+ .+....+.+.+|.+.++
T Consensus 150 i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~ 196 (244)
T PF02679_consen 150 IEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLG 196 (244)
T ss_dssp HHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-
T ss_pred HHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCC
Confidence 89999999999999999888532 222 23446678888888774
No 456
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=90.36 E-value=7.5 Score=34.98 Aligned_cols=90 Identities=21% Similarity=0.183 Sum_probs=61.1
Q ss_pred CCCCceEEEec---CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc-cEE
Q psy4398 99 REKNKIILQIG---TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVS 173 (306)
Q Consensus 99 ~~~~p~ivql~---g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~ 173 (306)
+.|..+.+++. ..+++.+.+.++.+.+ |+|.|-|- |-.|. -.|+.+.++++.+++.++. |+.
T Consensus 123 ~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~----------DT~G~---~~P~~v~~lv~~l~~~~~~~~l~ 189 (263)
T cd07943 123 KLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT----------DSAGA---MLPDDVRERVRALREALDPTPVG 189 (263)
T ss_pred HCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc----------CCCCC---cCHHHHHHHHHHHHHhCCCceEE
Confidence 45656666662 3578889999988765 99987662 45554 3699999999999998875 554
Q ss_pred EEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 174 CKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 174 vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+=.- .+..-...-+-.+.++|++.|..+
T Consensus 190 ~H~H--n~~GlA~AN~laAi~aGa~~vd~s 217 (263)
T cd07943 190 FHGH--NNLGLAVANSLAAVEAGATRIDGS 217 (263)
T ss_pred EEec--CCcchHHHHHHHHHHhCCCEEEee
Confidence 4444 333333444444456899999865
No 457
>PRK08444 hypothetical protein; Provisional
Probab=90.35 E-value=2 Score=40.61 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe-c----------c
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI-R----------V 178 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-r----------~ 178 (306)
-++++..+.|+.+++ |+..|-|-.|... ....+.+.++++.+++... .+.++. + .
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~G~~p------------~~~~e~y~e~ir~Ik~~~p-~i~i~a~s~~Ei~~~a~~~ 146 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVSAHNP------------NYGYEWYLEIFKKIKEAYP-NLHVKAMTAAEVDFLSRKF 146 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCC------------CCCHHHHHHHHHHHHHHCC-CceEeeCCHHHHHHHHHHc
Confidence 477889998887765 9999999654211 1246788999999998642 255663 2 1
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCC------CC-CCCCC--CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTK------AE-RPRHR--NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~------~~-~~~~p--~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
|.. ..+.++.|.++|+|.+.-++... .. -..+. ..|..+.+.+...++++.+.+=+.-+|+.++.++
T Consensus 147 g~~---~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~ 222 (353)
T PRK08444 147 GKS---YEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRID 222 (353)
T ss_pred CCC---HHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHH
Confidence 222 45777899999999775432211 00 01111 1344444444566888765544444455544444
No 458
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.34 E-value=3.3 Score=38.79 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=60.7
Q ss_pred CceEEEec-------CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE
Q psy4398 102 NKIILQIG-------TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS 173 (306)
Q Consensus 102 ~p~ivql~-------g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~ 173 (306)
.++.+=+. |.++++..+.++.+++ |+|.|+++.+...........-......+....+..+.+++.+++||.
T Consensus 217 ~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi 296 (338)
T cd04733 217 FPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLM 296 (338)
T ss_pred CeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEE
Confidence 46666664 5678888888988875 999999988753221110000001111223345778888888899988
Q ss_pred EEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 174 CKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 174 vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+-=+ . .+..+..+.+++.++|.|.+.
T Consensus 297 ~~G~--i--~t~~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 297 VTGG--F--RTRAAMEQALASGAVDGIGLA 322 (338)
T ss_pred EeCC--C--CCHHHHHHHHHcCCCCeeeeC
Confidence 7544 2 234455566666679988764
No 459
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=90.24 E-value=3.8 Score=38.23 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=66.9
Q ss_pred HHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEE-EeccC---CChHHHHHHHHHH-
Q psy4398 119 AAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC-KIRVF---HNEADTIALCKRL- 192 (306)
Q Consensus 119 aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v-Kir~g---~~~~~~~~~a~~l- 192 (306)
.|+.++ .|+|.|-+-=+ ..+ ..-||-..+.-..+.....+++|+.....|+.| -+..+ .+.++.++-|.++
T Consensus 47 sA~i~d~aGvD~ILVGDS--lgm-v~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~ 123 (332)
T PLN02424 47 SAVHVDSAGIDVCLVGDS--AAM-VVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRML 123 (332)
T ss_pred HHHHHHHcCCCEEEECCc--HHH-HhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 345555 49999876211 100 112333333345677777888888888888887 66654 3567787778777
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
.+.|+++|.+-+.. ....+.++.+. ..+|||++
T Consensus 124 ~eaGa~aVKlEGg~-------~~~~~~I~~l~-~~GIPV~g 156 (332)
T PLN02424 124 KEGGMDAVKLEGGS-------PSRVTAAKAIV-EAGIAVMG 156 (332)
T ss_pred HHhCCcEEEECCCc-------HHHHHHHHHHH-HcCCCEEE
Confidence 67999999997652 11335666666 44899993
No 460
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.21 E-value=3.2 Score=37.96 Aligned_cols=84 Identities=7% Similarity=0.041 Sum_probs=54.8
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEE
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVI 232 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvi 232 (306)
+.+.++++|+... .++.|-+. + .+-+..+.++|+|.|.+...+. +.+++..+.. +.|+-
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv~---t----leea~ea~~~gaDiI~LDn~s~----------e~l~~av~~~~~~~~le 242 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEVD---T----LDQLEEALELGVDAVLLDNMTP----------DTLREAVAIVAGRAITE 242 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeC---C----HHHHHHHHHcCCCEEEeCCCCH----------HHHHHHHHHhCCCceEE
Confidence 3566677776653 45666665 3 3344445579999999876532 3444444433 57899
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
++|||+ +++++++.+.|+ .+|..-+
T Consensus 243 aSGGI~-~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 243 ASGRIT-PETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred EECCCC-HHHHHHHHhcCCCEEEeChhhc
Confidence 999986 888888888776 5655433
No 461
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=90.20 E-value=7 Score=37.75 Aligned_cols=96 Identities=6% Similarity=-0.012 Sum_probs=66.9
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.++|++..+. |.+++++++.+..+.. |.|.|-= |+..|. | .-+.+|...+.+.+++..+.++...
T Consensus 142 ~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~-------~-~p~~eRv~~~~~a~~~a~~eTG~~~ 213 (412)
T TIGR03326 142 KDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQP-------F-NRFEERVEKLYKVRDKVEAETGERK 213 (412)
T ss_pred CCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCC-------C-ccHHHHHHHHHHHHHHHHHHhCCcc
Confidence 5679988875 6789999999887766 7787633 333222 1 2345667777788888877787654
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+-++.+.+.|+.++.+.
T Consensus 214 ~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~ 244 (412)
T TIGR03326 214 EYLANITAPVREMERRAELVADLGGQYVMVD 244 (412)
T ss_pred eEEEEecCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3333322557889999999999999998764
No 462
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=90.17 E-value=3.4 Score=40.48 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred EecCCCH---HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh---cccccEEEEeccC
Q psy4398 107 QIGTADP---ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS---NLSIPVSCKIRVF 179 (306)
Q Consensus 107 ql~g~~~---~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~---~~~~pv~vKir~g 179 (306)
++.|... +-.....+.+.+ |.|.+-+ ...+++.+.+...++.+++ .+...+..-.+.-
T Consensus 95 n~vgy~~ypddvv~~fv~~a~~~Gidi~Ri---------------fd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~ 159 (468)
T PRK12581 95 NLLGYRHYADDIVDKFISLSAQNGIDVFRI---------------FDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPV 159 (468)
T ss_pred cccCccCCcchHHHHHHHHHHHCCCCEEEE---------------cccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCc
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcE
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPV 231 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipv 231 (306)
-+.+-..++++.+++.|+|.|.+-+. .+...+....++++.+++..++||
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkDt--aG~l~P~~v~~Lv~alk~~~~~pi 209 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKDM--AGILTPKAAKELVSGIKAMTNLPL 209 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECCC--CCCcCHHHHHHHHHHHHhccCCeE
No 463
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=90.08 E-value=5.7 Score=38.26 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=66.4
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEE--EccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAID--INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~ve--ln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.++|++..+. |.+++++++.+..+.. |.|.|- =|+..|.. .-+.+|.+.+.+.+++..+.++...
T Consensus 137 ~~RPL~~tiiKp~~Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~--------~p~~~Rv~~~~~a~~~a~~eTG~~~ 208 (407)
T TIGR03332 137 HERPLLMSIFKGMIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGL--------APFEKRITEGKEVLQEVYEQTGHKT 208 (407)
T ss_pred CCCceeEeEeCCccCCCHHHHHHHHHHHhccCcccccCCCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHCCcc
Confidence 5678888875 5678888887776665 666652 24443321 2345677788888888888887665
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+..+..+=++.+.+.|+.++.+.
T Consensus 209 ~y~~NiT~~~~em~~ra~~a~~~G~~~~mv~ 239 (407)
T TIGR03332 209 LYAVNLTGRTFDLKDKAKRAAELGADVLLFN 239 (407)
T ss_pred eEeecCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 5444443455678999999999999998864
No 464
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=90.07 E-value=4.6 Score=36.85 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=56.2
Q ss_pred HHHHHhc-CCCEEEEc-------cCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-ChHHHHHHH
Q psy4398 119 AAKKVEH-DVAAIDIN-------MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-NEADTIALC 189 (306)
Q Consensus 119 aa~~~~~-g~d~veln-------~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-~~~~~~~~a 189 (306)
.|++++. ||+++=+. +|.|.. +. -..+.+.+.++++.+.+++||+|-+-.|+ +.....+.+
T Consensus 30 sA~la~~aGF~al~~sg~~vA~slG~pD~--------~~--~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV 99 (289)
T COG2513 30 SALLAERAGFKALYLSGAGVAASLGLPDL--------GI--TTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTV 99 (289)
T ss_pred HHHHHHHcCCeEEEeccHHHHHhcCCCcc--------cc--ccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHH
Confidence 3455654 99998884 222221 11 12566778888888899999999998865 355688899
Q ss_pred HHHHHcCCcEEEEccc
Q psy4398 190 KRLEACGIIAIGVHGR 205 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~ 205 (306)
+.++++|+.++++-+-
T Consensus 100 ~~~~~aG~agi~iEDq 115 (289)
T COG2513 100 RELEQAGAAGIHIEDQ 115 (289)
T ss_pred HHHHHcCcceeeeeec
Confidence 9999999999998653
No 465
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.05 E-value=3.8 Score=39.39 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
+..+.++.|.++|+|.|.+..... . +....+.++++++.+ +++| ..|+|.|.++++++++.|+
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g---~-~~~~~~~v~~ik~~~p~~~v-i~g~V~T~e~a~~l~~aGa 216 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHG---H-STRIIELVKKIKTKYPNLDL-IAGNIVTKEAALDLISVGA 216 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCC---C-ChhHHHHHHHHHhhCCCCcE-EEEecCCHHHHHHHHHcCC
Confidence 477888999999999999865431 1 122457899999988 5664 4688899999999999865
No 466
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=90.04 E-value=5.7 Score=38.35 Aligned_cols=96 Identities=7% Similarity=-0.004 Sum_probs=67.5
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= |+..+. | .-+.+|...+.+.+++..+.++...
T Consensus 129 ~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~-------~-~p~~~Rv~~~~~a~~~a~~eTG~~~ 200 (412)
T cd08213 129 KDRPLLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQP-------F-NRFEERAKESLKARDKAEAETGERK 200 (412)
T ss_pred CCCCeEEeecCcccCCCHHHHHHHHHHHHhcCCcccccCccCCCCC-------C-CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5689998875 6789999999887765 6776522 333222 1 2344677778888888888887664
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+-++.+.+.|++++.+.
T Consensus 201 ~y~~NiT~~~~em~~ra~~a~e~G~~~~mv~ 231 (412)
T cd08213 201 AYLANITAPVREMERRAELVADLGGKYVMID 231 (412)
T ss_pred eEEEEecCCHHHHHHHHHHHHHhCCCeEEee
Confidence 4443332457889999999999999998764
No 467
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=90.01 E-value=2.9 Score=40.87 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcE
Q psy4398 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPV 231 (306)
Q Consensus 154 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipv 231 (306)
++.+.++++..++ ++.-..|-+. + .+-++.+.++|++.|-|..|.....- .++....++...+ ++.+
T Consensus 145 ~~~l~~l~~~a~~-lGl~~lvEvh---~----~~El~~al~~~a~iiGiNnRdL~t~~---vd~~~~~~l~~~ip~~~~~ 213 (454)
T PRK09427 145 DEQYRQLAAVAHS-LNMGVLTEVS---N----EEELERAIALGAKVIGINNRNLRDLS---IDLNRTRELAPLIPADVIV 213 (454)
T ss_pred HHHHHHHHHHHHH-cCCcEEEEEC---C----HHHHHHHHhCCCCEEEEeCCCCccce---ECHHHHHHHHhhCCCCcEE
Confidence 3456666666543 5777777777 2 23334456689999888888754332 3566777777777 6788
Q ss_pred EEecCCCCHHHHHHHHHh--hhhhccccCCCCCc
Q psy4398 232 IANGGSKEIVDYGGVFSL--NCAFLRNHYPVEKL 263 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~--~v~vGrall~~p~~ 263 (306)
|+-+||.+++|+..+... ++-+|++++..|..
T Consensus 214 vseSGI~t~~d~~~~~~~~davLiG~~lm~~~d~ 247 (454)
T PRK09427 214 ISESGIYTHAQVRELSPFANGFLIGSSLMAEDDL 247 (454)
T ss_pred EEeCCCCCHHHHHHHHhcCCEEEECHHHcCCCCH
Confidence 999999999999886542 45999999987643
No 468
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=89.96 E-value=2.9 Score=38.19 Aligned_cols=92 Identities=10% Similarity=-0.016 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHh-hCCCcEEE
Q psy4398 156 IACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ-HLKIPVIA 233 (306)
Q Consensus 156 ~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~-~~~ipvia 233 (306)
.+.+.++.+|+.. ..++.|-+. ..+-++.+.++|+|.|.++..+.+ .-.+.++.+++ .-++.+.+
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~-------tleea~ea~~~GaDiI~lDn~~~e------~l~~~v~~l~~~~~~~~lea 240 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEAD-------TIEQALTVLQASPDILQLDKFTPQ------QLHHLHERLKFFDHIPTLAA 240 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCcCEEEECCCCHH------HHHHHHHHHhccCCCEEEEE
Confidence 4567778887754 355666665 345555566899999999854321 11233344432 22678999
Q ss_pred ecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 234 NGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
+|||+ ++++.+..+.++ .+|..-++.|
T Consensus 241 sGGI~-~~ni~~ya~~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 241 AGGIN-PENIADYIEAGIDLFITSAPYYAAP 270 (277)
T ss_pred ECCCC-HHHHHHHHhcCCCEEEeCcceecCc
Confidence 99986 888988888876 5554433455
No 469
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=89.87 E-value=4.3 Score=37.40 Aligned_cols=99 Identities=15% Similarity=0.249 Sum_probs=60.1
Q ss_pred cCCCCCCceEEEecCC----------CHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 96 TCPREKNKIILQIGTA----------DPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 96 ~~~~~~~p~ivql~g~----------~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
.+++.+..++++++|. +.+.|+++...+ .. |+|+|+|.+-.|... +. ...+...+.++.
T Consensus 62 ~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~---d~------~~~~~~~~al~~ 132 (294)
T cd06543 62 ALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALT---DT------AAIDRRAQALAL 132 (294)
T ss_pred HHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccc---cc------hhHHHHHHHHHH
Confidence 4455678999999873 356677666644 44 999999976654411 10 012445566677
Q ss_pred HHhcc-cccEEEEeccCCC--hHHHHHHHHHHHHcCC--cEEEEc
Q psy4398 164 LISNL-SIPVSCKIRVFHN--EADTIALCKRLEACGI--IAIGVH 203 (306)
Q Consensus 164 v~~~~-~~pv~vKir~g~~--~~~~~~~a~~l~~~G~--d~i~v~ 203 (306)
++++. +..|++-+...+. ..+..++.+.+.+.|+ |.|.+-
T Consensus 133 Lq~~~p~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~Gv~~d~VNiM 177 (294)
T cd06543 133 LQKEYPDLKISFTLPVLPTGLTPDGLNVLEAAAANGVDLDTVNIM 177 (294)
T ss_pred HHHHCCCcEEEEecCCCCCCCChhHHHHHHHHHHcCCCcceeeee
Confidence 76654 3345555443221 1245678888889996 566653
No 470
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=89.86 E-value=4 Score=37.58 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=55.9
Q ss_pred HHHHHhc-CCCEEEEccC-CC-ccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-ChHHHHHHHHHHHH
Q psy4398 119 AAKKVEH-DVAAIDINMG-CP-KQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-NEADTIALCKRLEA 194 (306)
Q Consensus 119 aa~~~~~-g~d~veln~g-cP-~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-~~~~~~~~a~~l~~ 194 (306)
.|+.++. ||++|=+.-. +- ...-..|. + .-..+.+.+.++.+.+.+++||++-+-.|. +.....+.++.+++
T Consensus 29 SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~--g--~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~ 104 (292)
T PRK11320 29 HALLAERAGFKAIYLSGGGVAAASLGLPDL--G--ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIK 104 (292)
T ss_pred HHHHHHHcCCCEEEeCHHHHHhHhcCCCCC--C--CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHH
Confidence 3455554 9999877421 10 00000111 1 123456677778888888999999998864 67778899999999
Q ss_pred cCCcEEEEccc
Q psy4398 195 CGIIAIGVHGR 205 (306)
Q Consensus 195 ~G~d~i~v~~~ 205 (306)
+|+.+|+|-+.
T Consensus 105 aGaagi~IEDq 115 (292)
T PRK11320 105 AGAAAVHIEDQ 115 (292)
T ss_pred cCCeEEEEecC
Confidence 99999999653
No 471
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=89.86 E-value=3.6 Score=39.31 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 214 RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 214 p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
..+|+.++.|++..+.|||. .||.|.++++.+++.|+
T Consensus 231 ~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~~~Gv 267 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVI-KGILDPEDARDAVRFGA 267 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHHhCCC
Confidence 45788999999999999875 66899999999999876
No 472
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=89.85 E-value=1.9 Score=38.81 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.++++..+.|+.. ++|+|.|+|+..+..+. .+.. .-....+.+..+++.+++.++.|+++-..
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~--~~~i--~~~~E~~rl~~~v~~~~~~~~~plsiDT~ 83 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPG--ADRV--SPEEELNRVVPVIKALRDQPDVPISVDTY 83 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCC--CCCC--CHHHHHHHHHHHHHHHHhcCCCeEEEeCC
Confidence 4567776666644 56999999975443321 1111 11223346788888888877888887654
No 473
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.76 E-value=7.1 Score=33.47 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=70.3
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-ccc--EEEEeccCC
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIP--VSCKIRVFH 180 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~p--v~vKir~g~ 180 (306)
+++-|-..++++..+.++.+..|.+.||+.... ....-.++++.+++.. +.. +..|+-
T Consensus 2 l~~alD~~~~~~a~~~~~~l~~~v~~iev~~~l----------------~~~~g~~~i~~l~~~~~~~~i~~d~k~~--- 62 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKVADYVDIIEIGTPL----------------IKNEGIEAVKEMKEAFPDRKVLADLKTM--- 62 (206)
T ss_pred eEEEecCCCHHHHHHHHHHcccCeeEEEeCCHH----------------HHHhCHHHHHHHHHHCCCCEEEEEEeec---
Confidence 455566778888888888885589999993111 1122245666666553 333 344444
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCc-HHHHHHHHhhCCCcEEEe-cCCCC-HHHHHHHHHhhh
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNR-IEMIRTLTQHLKIPVIAN-GGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~-~~~v~~i~~~~~ipvia~-GGI~s-~~~~~~~l~~~v 251 (306)
+... ..++.+.++|+|+|++|.-.. +.. .+.+..+++ .+++++.. =+..+ .++++.+.+.++
T Consensus 63 d~~~--~~~~~~~~~Gad~i~vh~~~~------~~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~ 127 (206)
T TIGR03128 63 DAGE--YEAEQAFAAGADIVTVLGVAD------DATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGA 127 (206)
T ss_pred cchH--HHHHHHHHcCCCEEEEeccCC------HHHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCC
Confidence 2221 246788899999999997531 112 244455554 57887754 23333 466666665444
No 474
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=89.73 E-value=2.5 Score=38.94 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----h--
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----N-- 250 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~-- 250 (306)
.|.+...++++.+.+.|+|+|.+-|.+.+...... ...+.++.+++.+ ++|||+.-|-++.+++.+..+. |
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad 101 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGAD 101 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCC
Confidence 57788999999999999999999888765443322 2456677788887 5898887665655555444432 3
Q ss_pred -hhhccccCCCC
Q psy4398 251 -CAFLRNHYPVE 261 (306)
Q Consensus 251 -v~vGrall~~p 261 (306)
+++-...|..|
T Consensus 102 ~il~v~PyY~k~ 113 (299)
T COG0329 102 GILVVPPYYNKP 113 (299)
T ss_pred EEEEeCCCCcCC
Confidence 25555555544
No 475
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=89.72 E-value=4.6 Score=40.88 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+++.+.+.++.+.+ |+|.|-|- |-.|. -.|..+.++++++++.+++||.+=.- .+..-...-.
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~Ik----------DtaG~---l~P~~v~~lv~alk~~~~ipi~~H~H--nt~Gla~an~ 215 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIK----------DMAGL---LTPTVTVELYAGLKQATGLPVHLHSH--STSGLASICH 215 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC----------CcccC---CCHHHHHHHHHHHHhhcCCEEEEEeC--CCCCcHHHHH
Confidence 578999999998765 99988772 44443 37999999999999988877666555 3322233333
Q ss_pred HHHHHcCCcEEEEc
Q psy4398 190 KRLEACGIIAIGVH 203 (306)
Q Consensus 190 ~~l~~~G~d~i~v~ 203 (306)
-.+.++|||.|..+
T Consensus 216 laAieaGad~iD~a 229 (596)
T PRK14042 216 YEAVLAGCNHIDTA 229 (596)
T ss_pred HHHHHhCCCEEEec
Confidence 44467999999864
No 476
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.66 E-value=0.94 Score=44.57 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
++..+.++.|.++|+|.|.+..-. ..+ ..-.+.+++|++.+ ++|||+ |.+.|.+.++++++.|+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~---g~~-~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~ 288 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH---GHQ-VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGA 288 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC---CCc-HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCC
Confidence 356789999999999999986433 111 23568899999987 899998 77899999999999865
No 477
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=89.62 E-value=6.9 Score=37.81 Aligned_cols=96 Identities=6% Similarity=0.017 Sum_probs=67.4
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= |+..|. | .-+.+|...+.+.+++..+.++...
T Consensus 130 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGiD~IKDDE~l~~q~-------~-~p~~eRv~~~~~a~~~a~~eTG~~~ 201 (414)
T cd08206 130 YGRPLLGTIVKPKLGLSPKEYARVVYEALRGGLDFVKDDENQNSQP-------F-MRFEDRILFVAEAMDKAEAETGEAK 201 (414)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhcCCcccccCccCCCCC-------C-CcHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5789998875 6789999999887765 7776621 333222 1 2345677778888888888887654
Q ss_pred EEEecc-CCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRV-FHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~-g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+ +.+.++..+=++.+.+.|+.++.+.
T Consensus 202 ~y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~ 233 (414)
T cd08206 202 GHYLNITADTPEEMIKRAEFAKELGSVIVMVD 233 (414)
T ss_pred eEEeccCCCcHHHHHHHHHHHHHhCCcEEEEe
Confidence 444433 2337889999999999999998864
No 478
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=89.55 E-value=4 Score=35.58 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=58.6
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+.|+|.+-+=+.-+++.. -.++.+.++++++.. + ..|-|-.. ++..++.+.+++.+.|.|.+|
T Consensus 20 ~~gad~iG~If~~~SpR~----------Vs~~~a~~i~~~v~~-~-~~VgVf~n-----~~~~~i~~i~~~~~ld~VQlH 82 (208)
T COG0135 20 KAGADYIGFIFVPKSPRY----------VSPEQAREIASAVPK-V-KVVGVFVN-----ESIEEILEIAEELGLDAVQLH 82 (208)
T ss_pred HcCCCEEEEEEcCCCCCc----------CCHHHHHHHHHhCCC-C-CEEEEECC-----CCHHHHHHHHHhcCCCEEEEC
Confidence 458999888544333311 246777777777654 1 23444444 335567778888999999999
Q ss_pred ccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC
Q psy4398 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK 238 (306)
Q Consensus 204 ~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~ 238 (306)
+- .+.++++++++..++|||=+=.+.
T Consensus 83 G~---------e~~~~~~~l~~~~~~~v~kai~v~ 108 (208)
T COG0135 83 GD---------EDPEYIDQLKEELGVPVIKAISVS 108 (208)
T ss_pred CC---------CCHHHHHHHHhhcCCceEEEEEeC
Confidence 74 356889999988777766554444
No 479
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=89.51 E-value=5.7 Score=36.59 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=54.5
Q ss_pred HHHHHhc-CCCEEEEccCCCcccc--ccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-ChHHHHHHHHHHHH
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFS--LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-NEADTIALCKRLEA 194 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~--~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-~~~~~~~~a~~l~~ 194 (306)
.|+.++. ||+++-+.-++-.... ..| ++ + -..+...+.++.+...+++||++-+-.|. +..+..+.++.+++
T Consensus 28 SArl~e~aGf~ai~~sg~~~~as~lG~pD--~g-~-l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~ 103 (294)
T TIGR02319 28 SAKVIQQAGFPAVHMTGSGTSASMLGLPD--LG-F-TSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFER 103 (294)
T ss_pred HHHHHHHcCCCEEEecHHHHHHHHcCCCC--cC-C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHH
Confidence 4455654 9999977311100000 001 11 1 23445667778888888999999998864 44557888999999
Q ss_pred cCCcEEEEccc
Q psy4398 195 CGIIAIGVHGR 205 (306)
Q Consensus 195 ~G~d~i~v~~~ 205 (306)
+|+.+|+|-+.
T Consensus 104 aGaagi~IEDq 114 (294)
T TIGR02319 104 VGIVGYHLEDQ 114 (294)
T ss_pred cCCeEEEEECC
Confidence 99999999654
No 480
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=89.47 E-value=3.1 Score=35.50 Aligned_cols=73 Identities=25% Similarity=0.330 Sum_probs=57.1
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
|+..=+|. .+.++..++++.+.+.|++.|.++-++ +...+.++.+++..+-..|+.|.|.+.++++++++.+
T Consensus 5 ~~~~i~r~-~~~~~~~~~~~~l~~~G~~~vev~~~~-------~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~G 76 (190)
T cd00452 5 PLVAVLRG-DDAEDALALAEALIEGGIRAIEITLRT-------PGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAG 76 (190)
T ss_pred cEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC
Confidence 44444552 567889999999999999999997542 3366788999988865678899999999999998865
Q ss_pred h
Q psy4398 251 C 251 (306)
Q Consensus 251 v 251 (306)
+
T Consensus 77 a 77 (190)
T cd00452 77 A 77 (190)
T ss_pred C
Confidence 4
No 481
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=89.44 E-value=7.3 Score=34.28 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=57.1
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEecc----
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIRV---- 178 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir~---- 178 (306)
+++.+.+.+.++....++.+..|+|.||+= -|.+.. ..+.+.+.++.+.++.. .++|+.+=+|.
T Consensus 2 i~v~~~~~~~~~~~~~~~~~~~~aD~vElR---------lD~l~~--~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eG 70 (228)
T TIGR01093 2 IFVPLTAPDLEEALATAEKICKGADIVELR---------VDLLKD--PSSNNDVDALIEQLSQLRPDKPLIFTIRTISEG 70 (228)
T ss_pred EEEEccCCCHHHHHHHHHHhccCCCEEEEE---------echhcc--cCcHHHHHHHHHHHHHhcCCCcEEEEECChhhC
Confidence 677888888888777777665699999993 332211 12233444555555432 36898888886
Q ss_pred C---CChHHHHHHHHHH-HHcCCcEEEEc
Q psy4398 179 F---HNEADTIALCKRL-EACGIIAIGVH 203 (306)
Q Consensus 179 g---~~~~~~~~~a~~l-~~~G~d~i~v~ 203 (306)
| .+.++..++.+.+ ...++|+|.+.
T Consensus 71 G~~~~~~~~~~~ll~~~~~~~~~d~vDiE 99 (228)
T TIGR01093 71 GKFPGNEEEYLEELKRAADSPGPDFVDIE 99 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 2 1334455666665 66789999985
No 482
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=89.40 E-value=9.3 Score=35.95 Aligned_cols=110 Identities=16% Similarity=0.264 Sum_probs=68.2
Q ss_pred CCCceEEEecCCC-HHH----HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEE
Q psy4398 100 EKNKIILQIGTAD-PER----ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC 174 (306)
Q Consensus 100 ~~~p~ivql~g~~-~~~----~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v 174 (306)
.+.|+.+|=..++ ..+ ..+..+..++|+|-|-+- +|. ....+-++.+++.+.+|+..
T Consensus 24 g~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRva--v~~----------------~~~a~al~~I~~~~~iPlvA 85 (360)
T PRK00366 24 GDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVA--VPD----------------MEAAAALPEIKKQLPVPLVA 85 (360)
T ss_pred CCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEc--cCC----------------HHHHHhHHHHHHcCCCCEEE
Confidence 4679999965543 222 333333444699998873 333 22355677888888999999
Q ss_pred EeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCc--EEEecC
Q psy4398 175 KIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIP--VIANGG 236 (306)
Q Consensus 175 Kir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ip--via~GG 236 (306)
-+- .+ ..+|-...++|+|.|-+.+...... ...+..+-+.++..++| |=.|.|
T Consensus 86 DIH--Fd----~~lAl~a~~~G~~~iRINPGNig~~---~~~v~~vv~~ak~~~ipIRIGvN~G 140 (360)
T PRK00366 86 DIH--FD----YRLALAAAEAGADALRINPGNIGKR---DERVREVVEAAKDYGIPIRIGVNAG 140 (360)
T ss_pred ecC--CC----HHHHHHHHHhCCCEEEECCCCCCch---HHHHHHHHHHHHHCCCCEEEecCCc
Confidence 988 44 4666677889999998875543110 12344444445555666 444555
No 483
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=89.30 E-value=1.8 Score=38.02 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=59.9
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
++++-|--.+.+++.+.++.+....+.|++++..= ..|| .+.+.++++.+++.- .|+++-+..+.-.
T Consensus 2 ~L~vALD~~~~~~a~~i~~~~~~~v~~iKvG~~l~------~~~G------~~~l~~~i~~l~~~~-~~I~~D~K~~Dig 68 (226)
T PF00215_consen 2 KLQVALDPTDLEEALRIADELGDYVDIIKVGTPLF------LAYG------LEALPEIIEELKERG-KPIFLDLKLGDIG 68 (226)
T ss_dssp EEEEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHH------HHHC------HHHHHHHHHHHHHTT-SEEEEEEEE-SSH
T ss_pred CEEEEeCCCCHHHHHHHHHHhcCcceEEEEChHHH------hcCC------hhhHHHHHHHHHHhc-CCEeeeeeecccc
Confidence 34555556677788888887777899999975421 1133 237788999998774 5655444433434
Q ss_pred HHHHHHHH---HHHHcCCcEEEEccc
Q psy4398 183 ADTIALCK---RLEACGIIAIGVHGR 205 (306)
Q Consensus 183 ~~~~~~a~---~l~~~G~d~i~v~~~ 205 (306)
......++ .+.+.|+|.+++|+.
T Consensus 69 ~t~~~~~~~~~~~~~~gaD~vTv~~~ 94 (226)
T PF00215_consen 69 NTVARYAEAGFAAFELGADAVTVHPF 94 (226)
T ss_dssp HHHHHHHHSCHHHHTTTESEEEEEGT
T ss_pred hHHHHHHHHhhhhhcCCCcEEEEecc
Confidence 45566666 678999999999974
No 484
>KOG4175|consensus
Probab=89.30 E-value=8.8 Score=33.27 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=34.8
Q ss_pred HHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH--hhhhhccccC
Q psy4398 218 EMIRTLTQHL-KIPVIANGGSKEIVDYGGVFS--LNCAFLRNHY 258 (306)
Q Consensus 218 ~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~--~~v~vGrall 258 (306)
+++.++++.+ +.|+-..=||.+.|+...+-+ .|+.+|+.+.
T Consensus 196 ~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsvaDGVvvGSkiv 239 (268)
T KOG4175|consen 196 SLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSVADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHhcCCCceeEeeccCCHHHHHhhhhhccceEecHHHH
Confidence 5778999999 899988889999999998875 4889998864
No 485
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=89.29 E-value=0.42 Score=40.47 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.|......-.+.+++...|++-+-+. .....++++++.+++||||.|=|.+.+++++++++|+
T Consensus 101 iDS~al~~~~~~i~~~~PD~vEilPg---------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa 163 (175)
T PF04309_consen 101 IDSSALETGIKQIEQSKPDAVEILPG---------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGA 163 (175)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEESC---------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTC
T ss_pred ecHHHHHHHHHHHhhcCCCEEEEchH---------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCC
Confidence 34455666778888899999988532 2336778888889999999999999999999999876
No 486
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=89.26 E-value=7 Score=39.79 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=47.1
Q ss_pred HHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC------------Ch
Q psy4398 116 ALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH------------NE 182 (306)
Q Consensus 116 ~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~------------~~ 182 (306)
+.+++..+. .++++|-+||+. .|+.+.++++.+...++.|+.|+-..|. +.
T Consensus 186 ~~~~~~~~~~~~~~avGiNC~~----------------~p~~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~~~~p 249 (612)
T PRK08645 186 LEEALKELVAAGADVVGLNCGL----------------GPYHMLEALERIPIPENAPLSAYPNAGLPEYVDGRYVYSANP 249 (612)
T ss_pred HHHHHHHHHhCCCCEEEecCCC----------------CHHHHHHHHHHHHhccCceEEEEECCCCCCCCCCccccCCCH
Confidence 555555554 379999999875 1344555666666556778888766532 23
Q ss_pred HHHHHHHHHHHHcCCcEEE
Q psy4398 183 ADTIALCKRLEACGIIAIG 201 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~ 201 (306)
+...+.++.+.+.|+..|-
T Consensus 250 ~~~~~~~~~~~~~Ga~iiG 268 (612)
T PRK08645 250 EYFAEYALEFVEQGVRLIG 268 (612)
T ss_pred HHHHHHHHHHHHhCCCEEe
Confidence 4567778888888988885
No 487
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=89.22 E-value=4 Score=38.27 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=47.0
Q ss_pred CCcEEEEcccCCCCCCCCCCcHHHHHHHHh-----hC---CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 196 GIIAIGVHGRTKAERPRHRNRIEMIRTLTQ-----HL---KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 196 G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~-----~~---~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
|++.|-|..|.-...- .+++...++.+ .+ ++-+|+-+||.+++|+..+.+.|+ -||.++++.|.
T Consensus 251 ga~iIGINNRdL~Tf~---vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 251 GVELIGINNRSLETFE---VDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDD 325 (338)
T ss_pred CCCEEEEeCCCCCcce---ECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCC
Confidence 7777777766544322 35666677766 22 455899999999999999998754 99999998764
No 488
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=89.21 E-value=7.1 Score=38.32 Aligned_cols=96 Identities=2% Similarity=-0.088 Sum_probs=66.1
Q ss_pred CCCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 99 REKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 99 ~~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
..+.|++..+. |-+++++++.+..+.. |.|.|-= |+..+. | .-+.++...+.+.+++..+.++..
T Consensus 157 v~~RPL~gtiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~-------f-~p~~~Rv~~~~~a~~~a~~eTG~~ 228 (468)
T PRK04208 157 KYGRPLLGTTPKPKLGLSAKNYGRVVYEALRGGLDFTKDDENLNSQP-------F-NRWRDRFLFVMEAIDKAEAETGER 228 (468)
T ss_pred CCCCceEEEeeccccCCCHHHHHHHHHHHHhcCCceeeCCCCCCCCC-------C-ccHHHHHHHHHHHHHHHHHhhCCc
Confidence 35778988875 6789999999887765 7777632 233221 1 234456677778888877777655
Q ss_pred EE--EEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 172 VS--CKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 172 v~--vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
.. +-++ +.+.++..+-++.+.+.|+.++.+.
T Consensus 229 k~y~~NiT-~~~~~em~~ra~~~~e~G~~~~mv~ 261 (468)
T PRK04208 229 KGHYLNVT-APTMEEMYKRAEFAKELGSPIVMID 261 (468)
T ss_pred ceEEEecC-CCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 33 3344 2347889999999999999998864
No 489
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=89.21 E-value=6 Score=38.86 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~ 190 (306)
+++.+.+.++.+.+ |+|.|-|- |-.|. -.|..+.++++++++.+++||.+=.- .+..-...-+-
T Consensus 151 t~e~~~~~a~~l~~~Gad~I~i~----------Dt~G~---l~P~~v~~Lv~~lk~~~~vpI~~H~H--nt~GlA~AN~l 215 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDSICIK----------DMAGL---LTPKRAYELVKALKKKFGVPVEVHSH--CTTGLASLAYL 215 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC----------CccCC---cCHHHHHHHHHHHHHhcCCceEEEec--CCCCcHHHHHH
Confidence 56888898887765 99987772 44443 37999999999999998877665554 23222333333
Q ss_pred HHHHcCCcEEEEc
Q psy4398 191 RLEACGIIAIGVH 203 (306)
Q Consensus 191 ~l~~~G~d~i~v~ 203 (306)
++.++|||.|..+
T Consensus 216 aAieaGad~vD~s 228 (467)
T PRK14041 216 AAVEAGADMFDTA 228 (467)
T ss_pred HHHHhCCCEEEee
Confidence 4457999999864
No 490
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=89.10 E-value=7.5 Score=38.23 Aligned_cols=96 Identities=3% Similarity=-0.158 Sum_probs=67.5
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= |+..+.- .-+.+|.+.+.+.+++..+.++...
T Consensus 165 ~~RPLigtiiKP~~GLsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~--------~p~~eRv~~~~~a~~~a~~eTG~~~ 236 (475)
T CHL00040 165 YGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPF--------MRWRDRFLFCAEAIYKAQAETGEIK 236 (475)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHcCCCcccccCccCCCCCC--------CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5678998875 6789999998886665 6776532 3332221 2345667777888888888887655
Q ss_pred EEEeccC-CChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVF-HNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g-~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-+.+. .+.++..+=++.+.+.|+.++.+.
T Consensus 237 ~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~ 268 (475)
T CHL00040 237 GHYLNATAGTCEEMYKRAVFARELGVPIVMHD 268 (475)
T ss_pred eeeeccCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 4444543 467889999999999999998763
No 491
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=89.10 E-value=6 Score=38.66 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+++.+.+.++.+.+ |+|.|-|- |-.|. -.|..+.++++++++.+++||.+=.- .+..-...-+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~----------Dt~G~---l~P~~v~~lv~alk~~~~~pi~~H~H--nt~GlA~AN~ 215 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIK----------DMAGI---LTPYVAYELVKRIKEAVTVPLEVHTH--ATSGIAEMTY 215 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc----------CCCCC---CCHHHHHHHHHHHHHhcCCeEEEEec--CCCCcHHHHH
Confidence 356888888887764 99987772 44443 37999999999999998877666555 2222233333
Q ss_pred HHHHHcCCcEEEEc
Q psy4398 190 KRLEACGIIAIGVH 203 (306)
Q Consensus 190 ~~l~~~G~d~i~v~ 203 (306)
-++.++|||.|..+
T Consensus 216 laAieaGad~vD~s 229 (448)
T PRK12331 216 LKAIEAGADIIDTA 229 (448)
T ss_pred HHHHHcCCCEEEee
Confidence 34457999999864
No 492
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=89.01 E-value=1.4 Score=39.30 Aligned_cols=117 Identities=9% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCC--------------ccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCCh
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGG--------------MGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNE 182 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~--------------~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~ 182 (306)
..+.+++ |+|+|-+..-.+..-..... .=..+.++.++..+....+.+.+ ..-+..-.+ +..
T Consensus 1 lI~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~st--pfd 78 (241)
T PF03102_consen 1 LIDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFST--PFD 78 (241)
T ss_dssp HHHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEE--E-S
T ss_pred CHHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEEC--CCC
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
.+.++++ ++.|++++-|.... -.++++++.+++ ++.|||.+-|..+.++.+++++
T Consensus 79 ~~s~d~l---~~~~~~~~KIaS~d-------l~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~Av~ 133 (241)
T PF03102_consen 79 EESVDFL---EELGVPAYKIASGD-------LTNLPLLEYIAK-TGKPVILSTGMSTLEEIERAVE 133 (241)
T ss_dssp HHHHHHH---HHHT-SEEEE-GGG-------TT-HHHHHHHHT-T-S-EEEE-TT--HHHHHHHHH
T ss_pred HHHHHHH---HHcCCCEEEecccc-------ccCHHHHHHHHH-hCCcEEEECCCCCHHHHHHHHH
No 493
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=88.93 E-value=3.7 Score=37.02 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHhc-CCCEEEEccCCCcccccc-CCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 112 DPERALEAAKKVEH-DVAAIDINMGCPKQFSLT-GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 112 ~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~-~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
+-++..++|+.++. |++.+---.--|.++.-. .++| +.-.++.+++++..+.|+...+. +..+...+
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlg-------e~gL~~l~~a~~~~Gl~vvtEvm---~~~~~e~~- 125 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLG-------EEGLKLLKRAADETGLPVVTEVM---DVRDVEAA- 125 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccC-------HHHHHHHHHHHHHcCCeeEEEec---CHHHHHHH-
Confidence 55778888888875 998887665544432211 2222 34566788888889999999988 43433333
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC-CCCHHHHHHHHHhhhhhc
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG-SKEIVDYGGVFSLNCAFL 254 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG-I~s~~~~~~~l~~~v~vG 254 (306)
.++ +|.|.|-+|.. .|+++++++-+ .+.||+.--| -.|++++-.+.++.++=|
T Consensus 126 ---~~y-~DilqvGARNM-------QNF~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~G 179 (286)
T COG2876 126 ---AEY-ADILQVGARNM-------QNFALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHG 179 (286)
T ss_pred ---Hhh-hhHHHhcccch-------hhhHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCC
Confidence 333 66666666532 36677777664 3789988866 457888888888766444
No 494
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=88.89 E-value=6.2 Score=34.45 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=73.0
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCC--EEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVA--AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d--~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
+.++.+|+.+.+.++..+.|+.+..++. .|+| |.++ .-.+.++.+++. ++++.+-.=
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~---------------~gl~ai~~L~~~-gi~v~~T~V- 109 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE---------------DGLKAIKKLSEE-GIKTNVTAI- 109 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH---------------hHHHHHHHHHHc-CCceeeEEe-
Confidence 3589999999999999999988765333 3333 3311 113455555444 444443332
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEE-cccCCCCCCCCCCcHHHHHHHHhhC---CCc-EEEecCCCCHHHHHHHHHhhh
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGV-HGRTKAERPRHRNRIEMIRTLTQHL---KIP-VIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v-~~~~~~~~~~~p~~~~~v~~i~~~~---~ip-via~GGI~s~~~~~~~l~~~v 251 (306)
.+ .+-+..+.++|+++|.. .+|..+... ..++.++++.+.+ +++ =|...|++++.++.++...|+
T Consensus 110 -~s----~~Qa~~Aa~AGA~yvsP~vgR~~~~g~---dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Ga 179 (211)
T cd00956 110 -FS----AAQALLAAKAGATYVSPFVGRIDDLGG---DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGA 179 (211)
T ss_pred -cC----HHHHHHHHHcCCCEEEEecChHhhcCC---CHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCC
Confidence 22 34445556789999774 344333222 2345555555544 433 445677899999998888765
No 495
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=88.89 E-value=19 Score=33.32 Aligned_cols=82 Identities=10% Similarity=0.163 Sum_probs=54.0
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g 179 (306)
.|+...+...+++++.+.++.. +.||..+-+.++ |. . -.+.++++++.++ +.+.+--..+
T Consensus 119 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~-~~---------------~--d~~~v~avr~~~~~~~l~vDaN~~ 180 (321)
T PRK15129 119 VTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLD-NH---------------L--ISERMVAIRSAVPDATLIVDANES 180 (321)
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCC-Cc---------------h--HHHHHHHHHHhCCCCeEEEECCCC
Confidence 3444455556777776666654 469999999752 11 1 1356788888763 2233333336
Q ss_pred CChHHHHHHHHHHHHcCCcEEE
Q psy4398 180 HNEADTIALCKRLEACGIIAIG 201 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~ 201 (306)
|+.+++.++++.+++.++.+|-
T Consensus 181 w~~~~A~~~~~~l~~~~i~~iE 202 (321)
T PRK15129 181 WRAEGLAARCQLLADLGVAMLE 202 (321)
T ss_pred CCHHHHHHHHHHHHhcCceEEE
Confidence 8889999999999999988774
No 496
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=88.88 E-value=4.4 Score=37.50 Aligned_cols=91 Identities=9% Similarity=0.079 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcc-----cccEEEEeccCCChHHHHHHHHHHHH------cCCcEEEEccc--CCCCCCCCCCcHHHHHHH
Q psy4398 157 ACNILTTLISNL-----SIPVSCKIRVFHNEADTIALCKRLEA------CGIIAIGVHGR--TKAERPRHRNRIEMIRTL 223 (306)
Q Consensus 157 ~~eiv~~v~~~~-----~~pv~vKir~g~~~~~~~~~a~~l~~------~G~d~i~v~~~--~~~~~~~~p~~~~~v~~i 223 (306)
+.+.++++++.. ..+|.|-++ + .+-++.+.+ +|+|.|.+... ++++... +.+.+++.
T Consensus 186 i~~av~~~r~~~~~~~~~~kIeVEv~---t----leea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~---~~e~l~~a 255 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIEVETR---T----LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDV---DVSMLKEA 255 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEEEEEC---C----HHHHHHHHHhcccccCCCCEEEeCCCcccccccCC---CHHHHHHH
Confidence 346667776622 234555555 2 333333445 89999999876 3332222 33555555
Q ss_pred HhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 224 TQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 224 ~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.+.. ..|+-++|||+ ++++.+..+.|+ ++|..-+
T Consensus 256 v~~~~~~~~lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 256 VELINGRFETEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred HHhhCCCceEEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 4444 47899999987 888888888776 5555433
No 497
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=88.76 E-value=2.5 Score=38.26 Aligned_cols=133 Identities=16% Similarity=0.228 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--CCChHHHHHH
Q psy4398 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIAL 188 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g~~~~~~~~~ 188 (306)
.+.+++..+. +.|++.|.+-++... ...+...+....+..+.+.++++..++. +..+.+-+.. +-+.+...++
T Consensus 72 ~~~~di~~a~---~~g~~~i~i~~~~S~-~~~~~~~~~~~~e~~~~~~~~i~~a~~~-G~~v~~~~eda~r~~~~~l~~~ 146 (262)
T cd07948 72 CHMDDARIAV---ETGVDGVDLVFGTSP-FLREASHGKSITEIIESAVEVIEFVKSK-GIEVRFSSEDSFRSDLVDLLRV 146 (262)
T ss_pred CCHHHHHHHH---HcCcCEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeeCCCCHHHHHHH
Confidence 3444444332 349998888665321 1122233333333345556666666554 4444444322 2456779999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhCCCcEEEecCCC---CHHHHHHHHHhhh
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHLKIPVIANGGSK---EIVDYGGVFSLNC 251 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~~ipvia~GGI~---s~~~~~~~l~~~v 251 (306)
++.+.++|++.|.+-+.... ..|. -.++++.+++.+++|+-..+-=+ ....+..+++.|+
T Consensus 147 ~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~ 210 (262)
T cd07948 147 YRAVDKLGVNRVGIADTVGI---ATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGA 210 (262)
T ss_pred HHHHHHcCCCEEEECCcCCC---CCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 99999999999988654321 1132 34677888888887775544211 1333444555554
No 498
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=88.65 E-value=16 Score=33.99 Aligned_cols=108 Identities=9% Similarity=0.086 Sum_probs=68.8
Q ss_pred ecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCCChHHHH
Q psy4398 108 IGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFHNEADTI 186 (306)
Q Consensus 108 l~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~ 186 (306)
|...++++..+.++.+ +||..+-+.+|. .+++.-.+.++++++.++ ..+.+-...+|+.+++.
T Consensus 111 l~~~~~~~~~~~a~~~-~Gf~~~KvKvG~---------------~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~ 174 (322)
T PRK05105 111 LCYGDPDELILKLADM-PGEKVAKVKVGL---------------YEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQ 174 (322)
T ss_pred eecCCHHHHHHHHHHc-CCCCEEEEEECC---------------CCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 3345677666555554 799988886542 133444566777777652 22333333368899999
Q ss_pred HHHHHHHH---cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHH
Q psy4398 187 ALCKRLEA---CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241 (306)
Q Consensus 187 ~~a~~l~~---~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~ 241 (306)
++++.+++ .++.+|- ++.. ..+..+++++.+++||.+-=.+.+.+
T Consensus 175 ~~~~~l~~~~~~~i~~iE-------qP~~---~~~~~~~l~~~~~~PIa~DEs~~~~~ 222 (322)
T PRK05105 175 QFAKYVPPDYRHRIAFLE-------EPCK---TPDDSRAFARATGIAIAWDESLREPD 222 (322)
T ss_pred HHHHHhhhhcCCCccEEE-------CCCC---CHHHHHHHHHhCCCCEEECCCCCchh
Confidence 99999998 7777764 2221 23455778888888887766666654
No 499
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.64 E-value=3.8 Score=38.27 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC--cEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-C
Q psy4398 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI--IAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-I 229 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~--d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-i 229 (306)
+++...+.++.++ ...++|-+..+.+.+ ..+-+..+.++|+ |.|.+.... ++. ....+.+++|++.++ +
T Consensus 70 ~~e~~~~~~r~~~---~~~l~v~~~vg~~~~-~~~~~~~Lv~ag~~~d~i~iD~a~---gh~-~~~~e~I~~ir~~~p~~ 141 (326)
T PRK05458 70 DPEARIPFIKDMH---EQGLIASISVGVKDD-EYDFVDQLAAEGLTPEYITIDIAH---GHS-DSVINMIQHIKKHLPET 141 (326)
T ss_pred CHHHHHHHHHhcc---ccccEEEEEecCCHH-HHHHHHHHHhcCCCCCEEEEECCC---Cch-HHHHHHHHHHHhhCCCC
Confidence 4544444443332 334567777655544 4566677777855 999986543 111 224678999999985 5
Q ss_pred cEEEecCCCCHHHHHHHHHhhh
Q psy4398 230 PVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 230 pvia~GGI~s~~~~~~~l~~~v 251 (306)
|| ..|.|.|.+++..+.+.|+
T Consensus 142 ~v-i~g~V~t~e~a~~l~~aGa 162 (326)
T PRK05458 142 FV-IAGNVGTPEAVRELENAGA 162 (326)
T ss_pred eE-EEEecCCHHHHHHHHHcCc
Confidence 54 4566889999999999876
No 500
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=88.62 E-value=1.5 Score=41.68 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred eEEEecCCCH-HHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh----------------
Q psy4398 104 IILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS---------------- 166 (306)
Q Consensus 104 ~ivql~g~~~-~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~---------------- 166 (306)
+.+++.+.+| ++|+++++.+.+..+.=-+=+|| |++.+.+.++.+..
T Consensus 73 Ialr~~S~DPae~fa~~vk~V~~a~~~PLIL~~~----------------D~evl~aale~~~~~kpLL~aAt~eNyk~m 136 (386)
T PF03599_consen 73 IALRLESGDPAEEFAKAVKKVAEAVDVPLILCGC----------------DPEVLKAALEACAGKKPLLYAATEENYKAM 136 (386)
T ss_dssp EEEE-GGGSTHHHHHHHHHHHHHC-SSEEEEESS----------------HHHHHHHHHHHTTTS--EEEEEBTTTHHHH
T ss_pred EEEEecCCChHHHHHHHHHHHHHhcCCCEEEEeC----------------CHHHHHHHHHHhCcCCcEEeEcCHHHHHHH
Q ss_pred -----cccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh-------CCCcEEEe
Q psy4398 167 -----NLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH-------LKIPVIAN 234 (306)
Q Consensus 167 -----~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~-------~~ipvia~ 234 (306)
..+.|+.++-. .+.+...++.+.+.+.|++-|++...+..-+|.-...+....+||.+ ++.|+|..
T Consensus 137 ~~lA~~y~~pl~v~sp--~Dln~lk~Ln~~l~~~Gv~dIVlDpgt~~lGyGie~t~s~~~rIRraALk~Dr~lgyPiI~~ 214 (386)
T PF03599_consen 137 AALAKEYGHPLIVSSP--IDLNLLKQLNIKLTELGVKDIVLDPGTRALGYGIEYTYSNMERIRRAALKGDRPLGYPIITF 214 (386)
T ss_dssp HHHHHHCT-EEEEE-S--SCHHHHHHHHHHHHTTT-GGEEEE---SSTTTTHHHHHHHHHHHHHHHHHT-GGG-S-BEEC
T ss_pred HHHHHHcCCeEEEEec--ccHHHHHHHHHHHHhcCcccEEecCCcccchhHHHHHHHHHHHHHHHHhccCcccCCceeec
Q ss_pred c
Q psy4398 235 G 235 (306)
Q Consensus 235 G 235 (306)
+
T Consensus 215 ~ 215 (386)
T PF03599_consen 215 P 215 (386)
T ss_dssp H
T ss_pred c
Done!