RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4398
(306 letters)
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 102 bits (255), Expect = 5e-26
Identities = 55/226 (24%), Positives = 93/226 (41%), Gaps = 21/226 (9%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+ LAPM FR LA ++GAD +SE + + +K +LL
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL------------ 49
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
P E+N + +QI ++P EAA+ + ID+N GCP + + G G ALL
Sbjct: 50 ----PQPHERN-VAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALL 104
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
I+ L ++S S K R+ + + + + L G+ + +H RT +
Sbjct: 105 KDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSF 164
Query: 212 RHRNRIEMIRTLTQHLKIPVIANGGS----KEIVDYGGVFSLNCAF 253
R + + L + + V + + K ++ G L A
Sbjct: 165 TGRAEWKALSVLEKRIPTFVSGDIFTPEDAKRALEESGCDGLLVAR 210
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l
(2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 128
Score = 43.6 bits (102), Expect = 3e-06
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 245 GVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETV--QYEKLFRSLVTVNGKQY 302
G+ + F R YP + PK L C+ ++ P YETV +++F S+VTV ++Y
Sbjct: 9 GIIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKY 68
Query: 303 TS 304
S
Sbjct: 69 QS 70
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 33.8 bits (77), Expect = 0.003
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 259 PVEKLPKTILYAHCKYKRFEVPKYETVQY---EKLFRSLVTVNGKQYTS 304
P K IL+ + + P Y + + F + VT++G Y S
Sbjct: 6 PNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGS 54
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 71
Score = 31.3 bits (71), Expect = 0.022
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 259 PVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSK 305
P K P IL +++ + K F V V+G+ +
Sbjct: 1 PSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGS 47
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 69
Score = 30.2 bits (68), Expect = 0.052
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 264 PKTILYAHCKYKRFEVPKYETVQ-----YEKLFRSLVTVNGKQYTS 304
KT L + + P+Y V+ +++F V VNGK +
Sbjct: 2 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIAT 47
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 31.0 bits (69), Expect = 0.15
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 15/108 (13%)
Query: 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG-------RTKAERPRHRNRIEMIRTL 223
+ + A+T+ L + +EA G I T A + R L
Sbjct: 216 SMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL 275
Query: 224 TQHLKIPVIANGG------SKEIVDYGGV--FSLNCAFLRNHYPVEKL 263
H+ +P++ + +I+ G S+ FL + + K
Sbjct: 276 KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKA 323
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 29.9 bits (66), Expect = 0.31
Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 26/143 (18%)
Query: 119 AAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178
+ K A+++N+ CP GMG A P++ NI + + IP K+
Sbjct: 122 SRKAEASGADALELNLSCP-HGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTP 180
Query: 179 FHNEADTIA-LCKRLEACGIIAIGVHGRTKAERPRHRNRI-------------------- 217
+ +IA K A G+ A +
Sbjct: 181 NVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRP 240
Query: 218 ---EMIRTLTQHLK-IPVIANGG 236
+ T+ + L P++A GG
Sbjct: 241 IALRAVTTIARALPGFPILATGG 263
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 29.8 bits (66), Expect = 0.35
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 174 CKIRVFHNEADTIALCKRLEACGIIAIGVHG--RTKAERPRHRNRIEMIRTLTQHLKIPV 231
+ A I +HG + ++N + ++ + Q + V
Sbjct: 119 NVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKV 178
Query: 232 IANGG 236
IA G
Sbjct: 179 IAEGN 183
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 29.1 bits (64), Expect = 0.71
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAI 130
P+E + I + + D ER E ++ HDV A
Sbjct: 33 PKEDVQKIRENASFDIERINEIEQETRHDVVAF 65
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 28.7 bits (63), Expect = 0.86
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 2/108 (1%)
Query: 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157
P+ + I D E + +K HDV A +G L++ D+
Sbjct: 40 PKGVTERIRNNAKIDVELFKKIEEKTNHDVVAFVEGIG--SMIGEDSRFFHYGLTSSDVL 97
Query: 158 CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
+ + + ++ F + +A + GVH
Sbjct: 98 DTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAE 145
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 212
Score = 28.3 bits (62), Expect = 0.88
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 2/88 (2%)
Query: 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161
N++IL + + + AL +V + + I + I +
Sbjct: 3 NRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFA 62
Query: 162 TTLISNLSIPVSCKIRVFHNEADTIALC 189
I F AD I +
Sbjct: 63 VADIPE--TNEKICRATFKAGADAIIVH 88
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 81
Score = 26.9 bits (59), Expect = 0.89
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 6/51 (11%)
Query: 259 PVEKLPKTILYAHCKYKRFEVPKYETVQ-----YEKLFRSLVTVNGKQYTS 304
++ K LY+ Y Y TV+ +G +
Sbjct: 3 KLDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGT 52
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B,
RpiB {Escherichia coli [TaxId: 562]}
Length = 159
Score = 28.0 bits (62), Expect = 1.0
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 156 IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL----EACGIIAIGVHGRTKAERP 211
A S P S ++ HN+ + +A R+ A I+ + + E
Sbjct: 88 AANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMIVDAWLG--AQYEGG 145
Query: 212 RHRNRIEMIRTLTQ 225
RH+ R+E I + Q
Sbjct: 146 RHQQRVEAITAIEQ 159
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 28.5 bits (62), Expect = 1.2
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 8/43 (18%)
Query: 80 NTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKK 122
N + G + P + +A AA K
Sbjct: 3 NVFYATNAFTGEALPLAFPVH--------TEVEVNQAATAAAK 37
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second
dsRBD {Xenopus laevis [TaxId: 8355]}
Length = 69
Score = 25.8 bits (56), Expect = 1.6
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 263 LPKTILYAHCKYKRFEVPKYETVQ 286
+P L K + +P+Y Q
Sbjct: 1 MPVGSLQELAVQKGWRLPEYTVAQ 24
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 27.1 bits (59), Expect = 2.2
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 176 IRVFHNEADTIALCKRLEA-CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234
+ + + +A + + G T R + +I L I VIA
Sbjct: 131 QLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEAL-CKAGIAVIAE 189
Query: 235 GG 236
G
Sbjct: 190 GK 191
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 27.3 bits (59), Expect = 2.3
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 194 ACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGV- 246
G IA + + + I ++ + Q K PV+ G EIV G
Sbjct: 257 TIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYAD 316
Query: 247 -FSLNCAFLRNHYPVEKL 263
+ + + +K+
Sbjct: 317 IIGCARPSIADPFLPQKV 334
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 26.0 bits (56), Expect = 2.4
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 261 EKLPKTILYAHCKYKRFEVPKYETVQYEK 289
P + L + ++ + P Y +
Sbjct: 5 SSGPISRLAQIQQARKEKEPDYILLSERG 33
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex
aeolicus [TaxId: 63363]}
Length = 68
Score = 25.3 bits (55), Expect = 2.9
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 264 PKTILYAHCKYKRFEVPKYETVQ-----YEKLFRSLVTVNGKQYTSK 305
KTIL + + E P+Y + ++K F + + +
Sbjct: 2 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE 48
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 27.2 bits (59), Expect = 3.0
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 80 NTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKK 122
N I +P G+ + + + T + + +AKK
Sbjct: 17 NEIKIYEPASGAELGS---------VPAMSTEEVDYVYASAKK 50
>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Bacillus subtilis [TaxId: 1423]}
Length = 237
Score = 26.8 bits (58), Expect = 3.3
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINM 134
N I+ + A E L + + + + M
Sbjct: 3 NNLPIIALDFASAEETLAFLAPFQQEPLFVKVGM 36
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 76
Score = 25.1 bits (54), Expect = 4.1
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 261 EKLPKTILYAHCKYKRFEVPKYETVQ 286
E P L K + +P+Y Q
Sbjct: 8 ECNPVGALQELVVQKGWRLPEYTVTQ 33
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 123
Score = 25.5 bits (56), Expect = 4.4
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 100 EKNKIILQIGTA-DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDI 156
+ IGTA + + L+ ++ D+ +DI M ++ + A P++
Sbjct: 22 SSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNV 79
>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur
protein methyltransferase MetR {Moorella thermoacetica
[TaxId: 1525]}
Length = 262
Score = 26.2 bits (57), Expect = 4.6
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 112 DPERALEAAKK-VEHDVAAIDINMG 135
DP E A++ E A+D+N+G
Sbjct: 23 DPAPVQEWARRQEEGGARALDLNVG 47
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 140
Score = 25.3 bits (55), Expect = 7.3
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 100 EKNKIILQIGTA-DPERALEAAKKVEHDVAAIDINM 134
+ + + TA DP A + KK DV +D+ M
Sbjct: 24 NSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEM 59
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional
regulator Rv1626 {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 190
Score = 25.2 bits (54), Expect = 8.4
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
D + A+E A+ + D+ +D+ M
Sbjct: 35 GDGQEAVELAELHKPDLVIMDVKMPRRDGIDAA 67
>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus),
beta-arrestin 1 [TaxId: 9913]}
Length = 171
Score = 25.0 bits (55), Expect = 9.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 77 DLLNTIDFVDPLDGSVV 93
D ++ ID V+P+DG V+
Sbjct: 22 DFVDHIDLVEPVDGVVL 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.405
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,136,847
Number of extensions: 54306
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 41
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)