Query psy4399
Match_columns 379
No_of_seqs 277 out of 1854
Neff 9.1
Searched_HMMs 46136
Date Sat Aug 17 00:30:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 8.9E-68 1.9E-72 478.7 25.5 329 1-379 155-490 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 6.1E-57 1.3E-61 455.7 33.4 294 1-350 143-440 (657)
3 PTZ00009 heat shock 70 kDa pro 100.0 3.3E-55 7.1E-60 446.4 35.1 278 1-322 123-401 (653)
4 PRK13410 molecular chaperone D 100.0 5.6E-55 1.2E-59 443.3 34.7 294 1-350 118-415 (668)
5 PRK13411 molecular chaperone D 100.0 5.6E-55 1.2E-59 444.2 33.8 273 1-322 116-392 (653)
6 PLN03184 chloroplast Hsp70; Pr 100.0 2.7E-54 5.8E-59 439.6 33.9 302 1-375 155-466 (673)
7 PTZ00400 DnaK-type molecular c 100.0 2.9E-54 6.3E-59 439.2 32.1 271 1-322 157-431 (663)
8 TIGR01991 HscA Fe-S protein as 100.0 6.4E-54 1.4E-58 432.9 34.2 290 1-350 112-401 (599)
9 COG0443 DnaK Molecular chapero 100.0 4.1E-54 9E-59 429.4 29.8 308 1-375 103-410 (579)
10 PRK00290 dnaK molecular chaper 100.0 1.6E-53 3.5E-58 433.6 34.8 271 1-322 116-390 (627)
11 TIGR02350 prok_dnaK chaperone 100.0 2.7E-53 5.9E-58 430.5 34.0 272 1-322 113-388 (595)
12 CHL00094 dnaK heat shock prote 100.0 6.5E-53 1.4E-57 428.1 34.4 271 1-322 118-392 (621)
13 PRK05183 hscA chaperone protei 100.0 5.6E-53 1.2E-57 426.9 33.7 280 1-350 132-417 (616)
14 KOG0101|consensus 100.0 5.5E-54 1.2E-58 416.9 25.1 324 1-379 126-464 (620)
15 KOG0102|consensus 100.0 2.8E-54 6E-59 403.8 19.8 296 1-351 143-443 (640)
16 PRK01433 hscA chaperone protei 100.0 6.4E-51 1.4E-55 408.6 30.8 272 1-350 124-395 (595)
17 PF00012 HSP70: Hsp70 protein; 100.0 6.3E-51 1.4E-55 416.1 30.3 274 1-322 118-394 (602)
18 KOG0103|consensus 100.0 2.8E-48 6E-53 373.6 24.7 304 1-347 120-426 (727)
19 KOG0104|consensus 100.0 6.8E-45 1.5E-49 351.2 24.8 288 1-331 141-440 (902)
20 PRK11678 putative chaperone; P 100.0 3E-42 6.6E-47 334.9 29.4 250 1-303 132-448 (450)
21 PRK13928 rod shape-determining 100.0 1.7E-33 3.8E-38 266.9 26.4 237 2-303 79-324 (336)
22 PRK13929 rod-share determining 100.0 2.9E-32 6.2E-37 258.0 24.9 237 1-300 79-324 (335)
23 PRK13927 rod shape-determining 100.0 3.3E-31 7.2E-36 251.4 24.6 236 2-303 81-325 (334)
24 TIGR02529 EutJ ethanolamine ut 100.0 1.6E-31 3.5E-36 240.2 17.5 195 1-298 44-238 (239)
25 TIGR00904 mreB cell shape dete 100.0 4.9E-30 1.1E-34 243.1 25.7 238 2-302 82-327 (333)
26 PRK13930 rod shape-determining 100.0 6.8E-30 1.5E-34 242.6 23.7 237 2-303 84-329 (335)
27 PRK15080 ethanolamine utilizat 100.0 6.9E-28 1.5E-32 220.4 22.3 196 2-300 72-267 (267)
28 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 3.4E-27 7.4E-32 219.0 17.2 234 2-300 77-319 (326)
29 COG1077 MreB Actin-like ATPase 99.9 2.8E-23 6E-28 186.1 19.9 240 2-304 84-333 (342)
30 TIGR01174 ftsA cell division p 99.9 2.7E-22 5.9E-27 192.9 17.7 207 31-299 157-371 (371)
31 PRK09472 ftsA cell division pr 99.9 8.7E-22 1.9E-26 191.7 19.2 208 33-301 167-387 (420)
32 COG0849 ftsA Cell division ATP 99.8 7.1E-20 1.5E-24 174.3 16.8 218 21-303 158-381 (418)
33 COG4820 EutJ Ethanolamine util 99.7 8.2E-18 1.8E-22 140.5 1.8 175 2-246 77-251 (277)
34 cd00012 ACTIN Actin; An ubiqui 99.5 6.1E-14 1.3E-18 135.1 13.4 237 18-302 95-347 (371)
35 PRK13917 plasmid segregation p 99.5 2.6E-13 5.7E-18 128.7 16.8 216 17-306 109-340 (344)
36 smart00268 ACTIN Actin. ACTIN 99.5 2.7E-13 5.8E-18 130.8 11.4 224 19-302 96-347 (373)
37 TIGR01175 pilM type IV pilus a 99.4 5.4E-12 1.2E-16 120.6 16.4 203 30-300 141-347 (348)
38 PF11104 PilM_2: Type IV pilus 99.4 7.7E-12 1.7E-16 119.0 16.2 164 31-247 135-300 (340)
39 TIGR03739 PRTRC_D PRTRC system 99.4 7.9E-12 1.7E-16 117.8 15.4 209 17-300 101-318 (320)
40 PF00022 Actin: Actin; InterP 99.3 3E-11 6.4E-16 117.4 11.5 232 18-301 94-366 (393)
41 PTZ00280 Actin-related protein 99.2 2.9E-10 6.3E-15 111.1 17.0 207 19-247 103-338 (414)
42 PTZ00281 actin; Provisional 99.1 4.7E-10 1E-14 108.1 11.7 225 18-301 101-349 (376)
43 PF06406 StbA: StbA protein; 99.1 4.9E-10 1.1E-14 105.4 10.9 176 47-297 141-316 (318)
44 PTZ00004 actin-2; Provisional 99.1 6.7E-10 1.5E-14 107.1 11.9 222 18-301 101-351 (378)
45 PF08841 DDR: Diol dehydratase 99.1 1.5E-09 3.3E-14 96.0 11.0 202 40-300 104-329 (332)
46 COG4972 PilM Tfp pilus assembl 99.0 7.6E-09 1.7E-13 93.8 14.7 200 33-300 150-352 (354)
47 PTZ00466 actin-like protein; P 99.0 5.5E-09 1.2E-13 100.6 14.4 222 18-301 106-353 (380)
48 PTZ00452 actin; Provisional 99.0 5.1E-09 1.1E-13 100.7 14.0 222 18-301 100-348 (375)
49 KOG0679|consensus 98.9 1.1E-07 2.3E-12 87.8 15.8 95 19-128 107-202 (426)
50 TIGR00241 CoA_E_activ CoA-subs 98.9 5.2E-08 1.1E-12 88.5 13.7 194 25-298 29-247 (248)
51 PF07520 SrfB: Virulence facto 98.8 1.4E-06 3.1E-11 90.2 23.3 268 17-304 455-836 (1002)
52 COG5277 Actin and related prot 98.5 3.3E-06 7.2E-11 82.3 14.6 97 19-128 107-204 (444)
53 KOG0797|consensus 98.3 2.1E-06 4.5E-11 82.0 8.5 92 20-126 229-321 (618)
54 TIGR03192 benz_CoA_bzdQ benzoy 98.3 3E-05 6.6E-10 70.9 15.5 206 24-302 59-288 (293)
55 TIGR03286 methan_mark_15 putat 98.2 3.2E-05 7E-10 73.5 13.6 69 196-301 333-402 (404)
56 TIGR02261 benz_CoA_red_D benzo 98.2 5.3E-05 1.2E-09 68.4 13.5 208 25-300 33-262 (262)
57 PRK10719 eutA reactivating fac 98.2 6.2E-06 1.4E-10 79.4 7.9 83 20-120 90-184 (475)
58 KOG0676|consensus 98.1 4E-05 8.7E-10 72.4 12.6 92 19-127 100-192 (372)
59 COG1924 Activator of 2-hydroxy 98.1 0.0001 2.2E-09 68.7 14.6 158 80-302 232-390 (396)
60 KOG0677|consensus 98.1 3.4E-05 7.5E-10 67.9 10.2 243 18-306 101-365 (389)
61 TIGR02259 benz_CoA_red_A benzo 98.0 5.3E-05 1.2E-09 71.4 11.5 182 50-300 249-432 (432)
62 COG4457 SrfB Uncharacterized p 97.7 0.013 2.9E-07 58.4 21.5 71 221-305 778-849 (1014)
63 PRK13317 pantothenate kinase; 97.6 0.0031 6.7E-08 58.0 15.3 51 221-301 222-273 (277)
64 PF02782 FGGY_C: FGGY family o 97.1 0.00088 1.9E-08 58.4 5.6 75 194-302 121-196 (198)
65 KOG0680|consensus 97.0 0.012 2.7E-07 53.7 11.5 103 19-126 94-198 (400)
66 COG1069 AraB Ribulose kinase [ 96.8 0.03 6.5E-07 55.0 13.9 191 80-305 271-481 (544)
67 PF14450 FtsA: Cell division p 96.8 0.0079 1.7E-07 48.0 8.2 46 79-130 1-57 (120)
68 PRK15027 xylulokinase; Provisi 96.5 0.0069 1.5E-07 60.6 7.3 74 199-305 364-437 (484)
69 TIGR01315 5C_CHO_kinase FGGY-f 96.5 0.01 2.2E-07 60.3 8.4 83 189-305 411-493 (541)
70 TIGR00555 panK_eukar pantothen 96.4 0.16 3.4E-06 46.7 14.6 49 220-298 229-278 (279)
71 PLN02669 xylulokinase 96.3 0.013 2.9E-07 59.5 7.8 71 197-302 422-492 (556)
72 PF01869 BcrAD_BadFG: BadF/Bad 96.2 0.42 9.1E-06 43.8 17.0 76 194-300 196-271 (271)
73 TIGR01312 XylB D-xylulose kina 95.9 0.023 4.9E-07 56.8 7.5 76 196-305 364-440 (481)
74 KOG2517|consensus 95.8 0.033 7.1E-07 55.0 8.0 75 199-307 391-466 (516)
75 PRK00047 glpK glycerol kinase; 95.8 0.027 5.9E-07 56.6 7.5 76 196-305 377-453 (498)
76 PF01968 Hydantoinase_A: Hydan 95.8 0.0082 1.8E-07 55.7 3.4 42 47-95 54-95 (290)
77 PTZ00294 glycerol kinase-like 95.8 0.028 6.1E-07 56.5 7.5 76 196-305 380-456 (504)
78 TIGR01311 glycerol_kin glycero 95.7 0.028 6E-07 56.4 7.1 74 198-305 375-449 (493)
79 TIGR01234 L-ribulokinase L-rib 95.7 0.031 6.7E-07 56.7 7.5 51 221-305 435-486 (536)
80 PRK04123 ribulokinase; Provisi 95.6 0.03 6.5E-07 57.0 7.1 75 197-305 414-489 (548)
81 PRK10331 L-fuculokinase; Provi 95.5 0.038 8.2E-07 55.1 7.3 75 197-305 364-439 (470)
82 TIGR02628 fuculo_kin_coli L-fu 95.5 0.037 8.1E-07 55.1 7.2 74 196-305 367-443 (465)
83 TIGR01314 gntK_FGGY gluconate 95.4 0.042 9.1E-07 55.3 7.2 51 221-305 401-451 (505)
84 PF02541 Ppx-GppA: Ppx/GppA ph 95.4 0.062 1.3E-06 49.8 7.8 75 37-121 77-151 (285)
85 TIGR02627 rhamnulo_kin rhamnul 95.3 0.052 1.1E-06 53.9 7.4 50 221-305 387-436 (454)
86 COG0533 QRI7 Metal-dependent p 95.2 0.099 2.1E-06 48.8 8.4 73 200-301 245-317 (342)
87 PLN02295 glycerol kinase 95.2 0.052 1.1E-06 54.7 7.1 51 221-305 412-462 (512)
88 PRK11031 guanosine pentaphosph 95.2 0.12 2.5E-06 51.9 9.4 79 33-121 93-171 (496)
89 PRK10939 autoinducer-2 (AI-2) 95.0 0.061 1.3E-06 54.4 7.1 51 221-305 409-459 (520)
90 PF08784 RPA_C: Replication pr 94.8 0.0073 1.6E-07 46.7 -0.2 40 332-373 63-102 (102)
91 PRK10640 rhaB rhamnulokinase; 94.7 0.094 2E-06 52.3 7.4 50 221-305 375-424 (471)
92 PRK10854 exopolyphosphatase; P 94.6 0.14 3.1E-06 51.6 8.5 106 3-120 69-175 (513)
93 KOG2531|consensus 94.6 0.11 2.4E-06 50.0 6.9 54 214-301 435-488 (545)
94 PLN02666 5-oxoprolinase 94.5 1.4 3E-05 49.1 16.1 41 50-95 291-332 (1275)
95 KOG0681|consensus 94.4 0.056 1.2E-06 52.9 4.6 112 3-125 97-213 (645)
96 COG1070 XylB Sugar (pentulose 94.3 0.21 4.6E-06 50.2 8.8 27 221-247 401-427 (502)
97 TIGR00744 ROK_glcA_fam ROK fam 94.1 2.5 5.5E-05 39.6 15.4 72 17-95 57-141 (318)
98 PF08735 DUF1786: Putative pyr 93.5 0.91 2E-05 40.8 10.3 94 15-118 111-206 (254)
99 PF07318 DUF1464: Protein of u 93.5 0.93 2E-05 42.6 10.7 45 199-247 242-286 (343)
100 TIGR03706 exo_poly_only exopol 93.3 0.38 8.3E-06 44.9 8.0 105 3-120 58-163 (300)
101 PRK03011 butyrate kinase; Prov 92.3 3.5 7.6E-05 39.5 13.2 53 221-305 295-347 (358)
102 PTZ00340 O-sialoglycoprotein e 92.0 2.1 4.6E-05 40.6 11.2 46 202-252 249-294 (345)
103 COG3426 Butyrate kinase [Energ 91.9 1.7 3.7E-05 39.6 9.7 29 218-246 293-321 (358)
104 PRK09604 UGMP family protein; 91.4 4.5 9.7E-05 38.4 12.8 27 221-247 254-280 (332)
105 COG4012 Uncharacterized protei 90.8 2.3 5E-05 38.2 9.3 85 25-125 186-273 (342)
106 PF06277 EutA: Ethanolamine ut 90.8 1.1 2.3E-05 44.0 7.9 73 20-96 87-162 (473)
107 COG0248 GppA Exopolyphosphatas 90.5 1.5 3.3E-05 43.7 9.0 85 5-95 60-147 (492)
108 PF03702 UPF0075: Uncharacteri 90.2 0.92 2E-05 43.4 7.0 50 195-247 261-310 (364)
109 COG0145 HyuA N-methylhydantoin 89.8 1 2.2E-05 46.6 7.4 41 49-95 256-296 (674)
110 TIGR03281 methan_mark_12 putat 88.8 2.5 5.4E-05 39.0 8.2 59 222-319 263-324 (326)
111 PRK14878 UGMP family protein; 87.9 24 0.00053 33.2 17.7 26 222-247 242-267 (323)
112 PLN02920 pantothenate kinase 1 86.8 18 0.0004 34.8 13.0 55 220-301 296-351 (398)
113 PRK00976 hypothetical protein; 85.8 5.4 0.00012 37.4 8.9 50 221-305 263-314 (326)
114 PF02543 CmcH_NodU: Carbamoylt 85.8 3.7 8.1E-05 39.3 8.1 80 190-305 135-216 (360)
115 PF13941 MutL: MutL protein 84.8 5.7 0.00012 39.2 8.9 32 216-247 380-412 (457)
116 cd06007 R3H_DEXH_helicase R3H 84.1 4 8.8E-05 27.9 5.4 41 6-48 4-44 (59)
117 KOG3108|consensus 83.3 0.5 1.1E-05 42.9 0.9 45 333-379 220-265 (265)
118 TIGR00143 hypF [NiFe] hydrogen 83.1 2.2 4.8E-05 44.7 5.7 27 221-247 658-684 (711)
119 PRK09557 fructokinase; Reviewe 82.5 41 0.00089 31.1 16.2 56 221-300 244-299 (301)
120 PRK05082 N-acetylmannosamine k 82.0 42 0.00091 30.9 18.2 55 221-301 233-287 (291)
121 COG2441 Predicted butyrate kin 81.1 15 0.00033 33.5 9.3 47 77-126 163-213 (374)
122 TIGR00329 gcp_kae1 metallohydr 80.5 44 0.00096 31.2 12.9 33 221-253 258-290 (305)
123 TIGR03123 one_C_unchar_1 proba 80.1 1.9 4E-05 40.5 3.5 19 77-95 128-146 (318)
124 COG0554 GlpK Glycerol kinase [ 79.5 6.7 0.00014 38.6 7.1 52 221-306 402-453 (499)
125 KOG0681|consensus 78.1 22 0.00048 35.5 10.1 56 222-302 559-614 (645)
126 PF14574 DUF4445: Domain of un 77.8 10 0.00023 36.9 8.0 51 197-247 59-109 (412)
127 PRK07058 acetate kinase; Provi 76.3 17 0.00037 35.1 8.8 47 196-246 297-344 (396)
128 cd02640 R3H_NRF R3H domain of 75.9 11 0.00024 25.8 5.5 42 6-48 4-45 (60)
129 PRK09585 anmK anhydro-N-acetyl 75.5 16 0.00035 35.0 8.4 44 200-246 268-311 (365)
130 KOG2708|consensus 74.6 20 0.00043 31.8 7.9 43 200-247 238-280 (336)
131 PRK09605 bifunctional UGMP fam 74.1 10 0.00022 38.5 7.2 26 222-247 246-271 (535)
132 cd02641 R3H_Smubp-2_like R3H d 71.9 20 0.00043 24.6 6.0 43 5-48 3-45 (60)
133 TIGR03723 bact_gcp putative gl 70.9 11 0.00024 35.5 6.1 27 221-247 259-285 (314)
134 COG5235 RFA2 Single-stranded D 70.0 2.3 5E-05 36.6 1.2 25 354-378 233-257 (258)
135 PF03630 Fumble: Fumble ; Int 66.7 1.2E+02 0.0026 28.9 14.5 53 221-300 287-340 (341)
136 cd02646 R3H_G-patch R3H domain 65.1 22 0.00048 24.0 5.1 42 4-48 2-43 (58)
137 PF14574 DUF4445: Domain of un 64.1 13 0.00027 36.4 5.1 58 184-242 291-348 (412)
138 PRK13310 N-acetyl-D-glucosamin 62.4 29 0.00063 32.2 7.2 56 221-300 245-300 (303)
139 PF00349 Hexokinase_1: Hexokin 57.2 16 0.00036 32.0 4.2 25 75-99 61-85 (206)
140 PRK13318 pantothenate kinase; 56.1 1.6E+02 0.0034 26.7 12.2 44 191-234 184-227 (258)
141 cd02639 R3H_RRM R3H domain of 54.9 39 0.00084 23.2 4.8 30 19-48 16-45 (60)
142 COG1521 Pantothenate kinase ty 54.4 74 0.0016 28.8 8.0 51 190-242 181-231 (251)
143 TIGR03722 arch_KAE1 universal 54.3 49 0.0011 31.1 7.2 26 222-247 243-268 (322)
144 KOG1794|consensus 53.7 35 0.00077 31.4 5.7 22 284-305 298-319 (336)
145 COG4819 EutA Ethanolamine util 51.7 9.3 0.0002 35.7 1.8 22 75-96 143-164 (473)
146 KOG1385|consensus 50.9 13 0.00029 35.8 2.7 20 76-95 212-231 (453)
147 COG2377 Predicted molecular ch 50.7 2E+02 0.0043 27.6 10.3 29 219-247 288-316 (371)
148 TIGR02707 butyr_kinase butyrat 48.2 71 0.0015 30.5 7.3 48 196-246 271-318 (351)
149 PRK00292 glk glucokinase; Prov 47.8 2.3E+02 0.0051 26.3 15.0 53 42-94 88-145 (316)
150 KOG2707|consensus 47.8 2.6E+02 0.0056 26.7 19.6 51 200-250 284-334 (405)
151 PLN02902 pantothenate kinase 47.6 3.4E+02 0.0075 29.3 12.5 36 76-117 213-249 (876)
152 KOG2872|consensus 47.1 63 0.0014 29.8 6.2 42 189-232 221-262 (359)
153 PRK00180 acetate kinase A/prop 46.9 52 0.0011 32.0 6.2 48 196-246 301-349 (402)
154 COG1548 Predicted transcriptio 46.7 66 0.0014 29.2 6.2 22 75-96 128-149 (330)
155 COG5026 Hexokinase [Carbohydra 40.3 43 0.00093 32.7 4.4 29 75-103 73-102 (466)
156 TIGR03393 indolpyr_decarb indo 40.2 1.3E+02 0.0028 30.5 8.3 67 13-90 10-77 (539)
157 TIGR00016 ackA acetate kinase. 38.1 90 0.0019 30.4 6.2 46 198-246 307-353 (404)
158 PF00871 Acetate_kinase: Aceto 38.0 3.9E+02 0.0084 26.0 14.1 48 196-246 298-346 (388)
159 PF00815 Histidinol_dh: Histid 37.6 57 0.0012 31.8 4.8 49 18-66 137-186 (412)
160 PLN02377 3-ketoacyl-CoA syntha 37.5 52 0.0011 33.1 4.7 51 196-246 168-219 (502)
161 PRK06895 putative anthranilate 36.7 40 0.00086 29.0 3.4 20 287-306 73-92 (190)
162 TIGR01319 glmL_fam conserved h 36.3 18 0.0004 35.6 1.3 35 212-246 380-418 (463)
163 PRK09698 D-allose kinase; Prov 35.8 1E+02 0.0022 28.5 6.2 80 194-300 214-294 (302)
164 PLN03172 chalcone synthase fam 34.7 99 0.0022 30.1 6.1 50 198-247 100-150 (393)
165 PLN02914 hexokinase 34.6 1.5E+02 0.0032 29.8 7.3 24 75-98 93-116 (490)
166 COG2192 Predicted carbamoyl tr 34.4 5.1E+02 0.011 26.3 17.5 80 190-305 258-338 (555)
167 cd06572 Histidinol_dh Histidin 33.3 1.1E+02 0.0023 29.8 5.9 78 18-95 123-213 (390)
168 PRK13321 pantothenate kinase; 33.3 1.9E+02 0.0042 26.1 7.4 46 79-125 2-47 (256)
169 PRK14840 undecaprenyl pyrophos 32.7 2.7E+02 0.006 25.2 8.1 73 147-236 125-208 (250)
170 COG0020 UppS Undecaprenyl pyro 32.7 2.7E+02 0.0058 25.2 8.0 75 146-237 118-203 (245)
171 PF01150 GDA1_CD39: GDA1/CD39 32.4 52 0.0011 32.3 3.8 66 31-96 103-183 (434)
172 PF05378 Hydant_A_N: Hydantoin 32.3 1.4E+02 0.003 25.4 5.9 25 81-105 3-27 (176)
173 PRK11199 tyrA bifunctional cho 31.7 4.4E+02 0.0095 25.3 10.0 15 221-235 97-111 (374)
174 PLN03170 chalcone synthase; Pr 31.7 1.1E+02 0.0023 29.9 5.8 50 198-247 104-154 (401)
175 PRK14836 undecaprenyl pyrophos 31.6 2.9E+02 0.0063 25.1 8.1 44 190-235 145-199 (253)
176 PRK14828 undecaprenyl pyrophos 31.6 2.7E+02 0.006 25.3 8.0 44 190-235 155-213 (256)
177 PF00814 Peptidase_M22: Glycop 31.3 82 0.0018 28.8 4.7 41 201-246 206-246 (268)
178 TIGR00055 uppS undecaprenyl di 31.2 3.1E+02 0.0067 24.4 8.0 69 150-235 105-184 (226)
179 COG4012 Uncharacterized protei 31.2 43 0.00092 30.4 2.6 49 78-127 2-73 (342)
180 COG1940 NagC Transcriptional r 31.1 2.5E+02 0.0055 25.9 8.1 56 75-130 4-59 (314)
181 PTZ00107 hexokinase; Provision 30.9 2.1E+02 0.0046 28.5 7.7 25 75-99 72-96 (464)
182 COG4020 Uncharacterized protei 30.7 2.7E+02 0.0059 25.3 7.5 28 219-246 266-296 (332)
183 PF02801 Ketoacyl-synt_C: Beta 30.7 70 0.0015 25.0 3.7 45 203-247 26-72 (119)
184 PRK00865 glutamate racemase; P 30.7 1.1E+02 0.0025 27.7 5.5 24 221-246 177-200 (261)
185 PLN02854 3-ketoacyl-CoA syntha 30.5 77 0.0017 32.1 4.6 52 189-247 184-236 (521)
186 PLN03173 chalcone synthase; Pr 30.0 1.2E+02 0.0026 29.5 5.8 49 199-247 101-150 (391)
187 PRK00877 hisD bifunctional his 29.9 58 0.0013 31.9 3.5 48 18-66 151-199 (425)
188 PF08392 FAE1_CUT1_RppA: FAE1/ 29.8 1E+02 0.0023 28.5 5.0 43 204-246 87-130 (290)
189 PRK14834 undecaprenyl pyrophos 29.8 3.4E+02 0.0074 24.6 8.2 45 190-236 145-200 (249)
190 PRK13320 pantothenate kinase; 29.6 1.9E+02 0.0041 26.0 6.7 44 190-234 173-216 (244)
191 PF03610 EIIA-man: PTS system 29.2 2.7E+02 0.0058 21.5 7.6 60 4-91 12-73 (116)
192 COG2082 CobH Precorrin isomera 29.1 2.2E+02 0.0048 25.0 6.6 55 3-61 141-199 (210)
193 PRK14878 UGMP family protein; 29.0 65 0.0014 30.4 3.7 42 198-239 42-83 (323)
194 PF14450 FtsA: Cell division p 28.9 5.4 0.00012 31.5 -3.1 54 4-61 53-119 (120)
195 COG0068 HypF Hydrogenase matur 28.6 1.2E+02 0.0027 31.6 5.7 33 220-252 692-724 (750)
196 TIGR03722 arch_KAE1 universal 28.6 83 0.0018 29.6 4.4 41 198-238 43-83 (322)
197 smart00732 YqgFc Likely ribonu 28.6 1.4E+02 0.0031 21.9 5.0 21 79-99 3-23 (99)
198 PF00814 Peptidase_M22: Glycop 27.5 66 0.0014 29.4 3.4 45 198-242 27-71 (268)
199 PF11314 DUF3117: Protein of u 27.5 40 0.00087 21.8 1.3 23 278-300 27-49 (51)
200 PRK13318 pantothenate kinase; 27.1 2.7E+02 0.0059 25.1 7.4 17 79-95 2-18 (258)
201 PF13941 MutL: MutL protein 27.0 1.5E+02 0.0032 29.5 5.8 29 79-107 2-30 (457)
202 COG3894 Uncharacterized metal- 26.8 3E+02 0.0064 27.7 7.6 44 79-122 166-210 (614)
203 PRK14830 undecaprenyl pyrophos 26.8 3.9E+02 0.0085 24.2 8.1 60 160-236 138-208 (251)
204 TIGR00329 gcp_kae1 metallohydr 26.6 87 0.0019 29.2 4.1 46 197-242 45-90 (305)
205 TIGR00067 glut_race glutamate 26.6 1.5E+02 0.0033 26.7 5.5 24 221-246 172-195 (251)
206 cd01741 GATase1_1 Subgroup of 26.3 64 0.0014 27.4 2.9 20 287-306 82-101 (188)
207 PTZ00340 O-sialoglycoprotein e 25.8 1.1E+02 0.0023 29.3 4.5 46 196-241 45-90 (345)
208 PF01424 R3H: R3H domain; Int 25.8 1.1E+02 0.0023 20.8 3.4 26 22-48 22-47 (63)
209 cd03012 TlpA_like_DipZ_like Tl 25.7 2.7E+02 0.0059 21.6 6.3 62 3-64 42-103 (126)
210 PRK15080 ethanolamine utilizat 25.6 2.2E+02 0.0047 25.9 6.4 46 75-120 22-67 (267)
211 PRK10240 undecaprenyl pyrophos 25.2 3.6E+02 0.0078 24.1 7.4 70 150-236 99-179 (229)
212 PF12242 Eno-Rase_NADH_b: NAD( 25.2 2.2E+02 0.0047 20.7 4.8 25 221-246 38-62 (78)
213 PRK14832 undecaprenyl pyrophos 25.0 4.3E+02 0.0092 24.0 8.0 45 190-236 149-204 (253)
214 COG0533 QRI7 Metal-dependent p 25.0 1.5E+02 0.0033 28.1 5.2 46 195-240 45-90 (342)
215 smart00842 FtsA Cell division 24.7 42 0.00091 28.7 1.5 31 31-61 156-186 (187)
216 TIGR03723 bact_gcp putative gl 24.2 1E+02 0.0023 28.9 4.1 46 197-242 46-91 (314)
217 cd00475 CIS_IPPS Cis (Z)-Isopr 24.1 4.4E+02 0.0096 23.3 7.8 44 190-235 131-185 (221)
218 cd01745 GATase1_2 Subgroup of 23.8 75 0.0016 27.2 2.9 20 287-306 101-120 (189)
219 KOG1369|consensus 23.7 6.3E+02 0.014 25.3 9.4 26 74-99 83-108 (474)
220 PRK14829 undecaprenyl pyrophos 23.7 5E+02 0.011 23.4 8.1 45 190-236 145-200 (243)
221 PLN02596 hexokinase-like 23.5 1.1E+02 0.0024 30.6 4.3 26 74-99 93-118 (490)
222 KOG0678|consensus 23.5 3.2E+02 0.007 25.9 6.9 99 19-125 107-207 (415)
223 PRK09604 UGMP family protein; 23.3 1.1E+02 0.0024 28.9 4.2 45 198-242 49-93 (332)
224 COG3840 ThiQ ABC-type thiamine 23.1 88 0.0019 27.1 3.0 18 29-46 102-119 (231)
225 PRK12408 glucokinase; Provisio 23.1 2.3E+02 0.0049 26.8 6.2 52 43-94 107-163 (336)
226 cd02198 YjgH_like YjgH belongs 23.0 1.4E+02 0.0029 23.0 3.9 49 199-247 33-83 (111)
227 COG4172 ABC-type uncharacteriz 22.5 73 0.0016 31.1 2.6 35 25-59 423-457 (534)
228 PLN02362 hexokinase 22.4 1.2E+02 0.0026 30.6 4.3 25 75-99 93-117 (509)
229 PLN02192 3-ketoacyl-CoA syntha 22.3 1.7E+02 0.0038 29.5 5.4 46 202-247 178-224 (511)
230 COG0141 HisD Histidinol dehydr 22.2 71 0.0015 31.1 2.5 48 18-66 147-195 (425)
231 PRK14833 undecaprenyl pyrophos 21.8 5.8E+02 0.013 22.8 8.1 44 190-235 135-188 (233)
232 PLN03168 chalcone synthase; Pr 21.4 2E+02 0.0043 27.9 5.5 49 198-246 99-148 (389)
233 COG0444 DppD ABC-type dipeptid 21.3 78 0.0017 29.7 2.6 42 18-59 143-184 (316)
234 PRK07515 3-oxoacyl-(acyl carri 21.2 85 0.0018 30.1 3.0 48 197-246 266-313 (372)
235 TIGR01198 pgl 6-phosphoglucono 21.1 1.8E+02 0.0038 25.9 4.8 41 198-243 10-50 (233)
236 KOG1154|consensus 21.0 1.6E+02 0.0035 26.4 4.2 54 5-58 102-156 (285)
237 TIGR03725 bact_YeaZ universal 21.0 1.4E+02 0.003 25.9 4.0 46 198-243 31-76 (202)
238 PF02472 ExbD: Biopolymer tran 20.9 2.3E+02 0.0049 22.2 5.0 52 5-56 77-130 (130)
239 PRK07157 acetate kinase; Provi 20.7 2.4E+02 0.0053 27.4 5.8 46 198-246 300-346 (400)
240 PF01869 BcrAD_BadFG: BadF/Bad 20.6 6.2E+02 0.014 22.7 11.2 18 82-99 3-20 (271)
241 PRK14842 undecaprenyl pyrophos 20.5 6.2E+02 0.013 22.8 8.0 73 147-236 111-195 (241)
242 PRK12440 acetate kinase; Revie 20.4 2.3E+02 0.005 27.6 5.6 46 197-246 300-346 (397)
243 TIGR02707 butyr_kinase butyrat 20.2 2.1E+02 0.0045 27.4 5.3 27 79-105 2-28 (351)
244 PRK12879 3-oxoacyl-(acyl carri 20.0 1.9E+02 0.0042 26.8 5.1 48 196-246 219-266 (325)
No 1
>KOG0100|consensus
Probab=100.00 E-value=8.9e-68 Score=478.71 Aligned_cols=329 Identities=61% Similarity=0.918 Sum_probs=307.7
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|-++|+.||.|+|.+++++|+|||+||++.||++.++|..+||++++++++||+|||++|+.++.. .+++++
T Consensus 155 MiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~------gEknil 228 (663)
T KOG0100|consen 155 MILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKD------GEKNIL 228 (663)
T ss_pred HHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccccC------CcceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999998763 468999
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|+|+||||||+|++.+.+|+|+++++.|+..+||++||+++++|+.+-++++.+.+++++.+++.+|+++||++|+.||+
T Consensus 229 VfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSs 308 (663)
T KOG0100|consen 229 VFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSS 308 (663)
T ss_pred EEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
+.+..+.++.+++|.||+..++ |..|+++.-+++..++.+++++|+++++.+.+|+.|+||||++|+|.||+.
T Consensus 309 qhq~riEIeS~fdG~DfSEtLt-------RAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQql 381 (663)
T KOG0100|consen 309 QHQVRIEIESLFDGVDFSETLT-------RAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQL 381 (663)
T ss_pred ccceEEeeeeccccccccchhh-------hhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcccceeEeec
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 320 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~~~~ 320 (379)
++++|.+ +++...+||++|||+|||.+|..|||+ +...+++|+||+
T Consensus 382 lk~fF~G--------------------------------KepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~ 427 (663)
T KOG0100|consen 382 LKDFFNG--------------------------------KEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVN 427 (663)
T ss_pred HHHHhCC--------------------------------CCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeec
Confidence 9999976 788999999999999999999999995 678999999999
Q ss_pred ccccccccCCCCcccccccccccccccccccccchh-------hhhhhhcCceeeeecCCccccCC
Q psy4399 321 PQLAWRSFKNDSYGVDIDTIMNNLAIKIPLQQVKNT-------VEELINEGHIYTTIDDNHYQTVD 379 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~~~~~~~-------~~~~~~~~~~~~t~~~~~~~~~~ 379 (379)
|+..+... ..|++.+.|++|+.+|..++|+..+ +-..|+||+.-.|.|++++.+||
T Consensus 428 pLtlGIET---vGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFd 490 (663)
T KOG0100|consen 428 PLTLGIET---VGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFD 490 (663)
T ss_pred cccceeee---ecceeeccccCCcccCccccceeeecccCCceEEEEEeecccccccccccccccc
Confidence 99433321 2457788999999888887777665 33457899999999999999886
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=6.1e-57 Score=455.68 Aligned_cols=294 Identities=48% Similarity=0.777 Sum_probs=259.9
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|||++||+.|+.++|.++.++|||||++|++.||+++++|++.|||+++++++||+|||++|+.... .+.+++
T Consensus 143 ~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~-------~~~~vl 215 (657)
T PTZ00186 143 FVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT-------KDSLIA 215 (657)
T ss_pred HHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC-------CCCEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999988654 468899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.|+..+||++||+.|.+|+.+++.++++.++..+++.+.+|+.+||++|+.||.
T Consensus 216 V~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~ 295 (657)
T PTZ00186 216 VYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSS 295 (657)
T ss_pred EEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999888888888889999999999999999999
Q ss_pred CceeEEEeecccCC----cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 161 STQASIEIDSLFEG----VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 161 ~~~~~~~i~~~~~~----~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
...+.+.++.+..+ .++...++ |++|+++++++++++..+++++|+++++.+.+|+.|+||||+||+|.
T Consensus 296 ~~~~~i~i~~i~~~~~g~~~~~~~It-------R~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~ 368 (657)
T PTZ00186 296 AMETEVNLPFITANADGAQHIQMHIS-------RSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPK 368 (657)
T ss_pred CCceEEEEeeeccCCCCCcceEEEec-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChH
Confidence 98888888765432 23555566 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhccccee
Q psy4399 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 316 (379)
Q Consensus 237 v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~ 316 (379)
|+++|+++|+. .+....||++|||+|||++|+++++. ++++++
T Consensus 369 V~~~l~~~fg~---------------------------------~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l 411 (657)
T PTZ00186 369 VVEEVKKFFQK---------------------------------DPFRGVNPDEAVALGAATLGGVLRGD----VKGLVL 411 (657)
T ss_pred HHHHHHHHhCC---------------------------------CccccCCCchHHHHhHHHHHHHhccc----cCceEE
Confidence 99999999974 45678899999999999999999984 578999
Q ss_pred EeecccccccccCCCCcccccccccccccccccc
Q psy4399 317 LDVTPQLAWRSFKNDSYGVDIDTIMNNLAIKIPL 350 (379)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~ 350 (379)
+||+|+..+.... .|.....|++|+ ++|+
T Consensus 412 ~Dv~p~slgie~~---~g~~~~iI~rnt--~iP~ 440 (657)
T PTZ00186 412 LDVTPLSLGIETL---GGVFTRMIPKNT--TIPT 440 (657)
T ss_pred Eeeccccccceec---CCEEEEEEeCCC--EeeE
Confidence 9999993222211 122234566676 4554
No 3
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=3.3e-55 Score=446.38 Aligned_cols=278 Identities=80% Similarity=1.173 Sum_probs=258.9
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|||++|++.|+.++|.++.++|||||++|+..||+++++||+.||++++++++||+|||++|+...... .+.+++
T Consensus 123 ~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~-----~~~~vl 197 (653)
T PTZ00009 123 MVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGD-----GEKNVL 197 (653)
T ss_pred HHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCC-----CCCEEE
Confidence 689999999999999999999999999999999999999999999999999999999999998765322 367899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhc-cCccccHHHHHHHHHHHHHHhhhcC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK-KDLTTNKRALRRLRTACERAKRTLS 159 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~-~~~~~~~~~~~~L~~~~e~~K~~ls 159 (379)
|||+||||||+|++++.++.++++++.++..+||++||..|++|+.+++.+++. .++..+++.+.+|+.+||++|+.||
T Consensus 198 v~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS 277 (653)
T PTZ00009 198 IFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLS 277 (653)
T ss_pred EEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999987763 5667788999999999999999999
Q ss_pred CCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHH
Q psy4399 160 SSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 239 (379)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~ 239 (379)
.+.++.+.++.+.++.++...++ |++|+++++++++++...++++|+++++...+|+.|+|+||+||+|.|++
T Consensus 278 ~~~~~~i~i~~~~~~~d~~~~it-------R~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~ 350 (653)
T PTZ00009 278 SSTQATIEIDSLFEGIDYNVTIS-------RARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQS 350 (653)
T ss_pred CCceEEEEEEeccCCceEEEEEC-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHH
Confidence 99999999988888888887777 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcccceeEee
Q psy4399 240 LLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDV 319 (379)
Q Consensus 240 ~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~~~ 319 (379)
+|+++|++ ..+....||++|||+|||++|+++++...+.+++++++|+
T Consensus 351 ~i~~~f~~--------------------------------~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv 398 (653)
T PTZ00009 351 LIKDFFNG--------------------------------KEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDV 398 (653)
T ss_pred HHHHHhCC--------------------------------CCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEee
Confidence 99999975 4677789999999999999999999976677889999999
Q ss_pred ccc
Q psy4399 320 TPQ 322 (379)
Q Consensus 320 ~~~ 322 (379)
+|+
T Consensus 399 ~p~ 401 (653)
T PTZ00009 399 TPL 401 (653)
T ss_pred ccc
Confidence 999
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=5.6e-55 Score=443.26 Aligned_cols=294 Identities=50% Similarity=0.790 Sum_probs=260.6
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|||++|++.|+.++|.++.++|||||++|+..||+++++||+.||++++++++||+|||++|+.... .+.+++
T Consensus 118 ~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-------~~~~vl 190 (668)
T PRK13410 118 MILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS-------SSQTVL 190 (668)
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC-------CCCEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999988754 468899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.++..+||++||..|++|+.+++.++++.++..+++.+.+|+.+||++|+.||.
T Consensus 191 V~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~ 270 (668)
T PRK13410 191 VFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSG 270 (668)
T ss_pred EEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999888888888889999999999999999999
Q ss_pred CceeEEEeecccCC----cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 161 STQASIEIDSLFEG----VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 161 ~~~~~~~i~~~~~~----~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
...+.+.++.+..+ .++...++ |++|+++++++++++..+++++|+++++.+.+|+.|+||||+||+|+
T Consensus 271 ~~~~~i~i~~~~~~~~g~~~~~~~it-------R~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~ 343 (668)
T PRK13410 271 VSVTDISLPFITATEDGPKHIETRLD-------RKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPM 343 (668)
T ss_pred CCceEEEEeeeecCCCCCeeEEEEEC-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHH
Confidence 98888888765433 24555555 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhccccee
Q psy4399 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 316 (379)
Q Consensus 237 v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~ 316 (379)
|++.|+++|+. ++....||++|||+|||++|+++++. ++++++
T Consensus 344 V~~~l~~~fg~---------------------------------~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l 386 (668)
T PRK13410 344 VQQLVRTLIPR---------------------------------EPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLL 386 (668)
T ss_pred HHHHHHHHcCC---------------------------------CcccCCCCchHHHHhHHHHHHhhccc----ccceeE
Confidence 99999999973 56778899999999999999999984 578999
Q ss_pred EeecccccccccCCCCcccccccccccccccccc
Q psy4399 317 LDVTPQLAWRSFKNDSYGVDIDTIMNNLAIKIPL 350 (379)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~ 350 (379)
+||+|+..+.... .|.....|++|+ ++|+
T Consensus 387 ~Dv~p~slgie~~---~g~~~~li~rnt--~iP~ 415 (668)
T PRK13410 387 LDVTPLSLGLETI---GGVMKKLIPRNT--TIPV 415 (668)
T ss_pred Eeeccccccceec---CCeeEEEEeCCC--cccc
Confidence 9999993322211 122334566666 5554
No 5
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=5.6e-55 Score=444.21 Aligned_cols=273 Identities=59% Similarity=0.926 Sum_probs=251.6
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|||++|++.|+.++|.++.++|||||++|+..||+++++|++.||++++++++||+|||++|+..... .+.+++
T Consensus 116 ~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~------~~~~vl 189 (653)
T PRK13411 116 MILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQD------QEQLIL 189 (653)
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhcccccC------CCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999886431 467899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.|+..+||++||+.|++|+.+++.++.+.++..+++.+.+|+.+||++|+.||.
T Consensus 190 V~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~ 269 (653)
T PRK13411 190 VFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSS 269 (653)
T ss_pred EEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999888888888889999999999999999999
Q ss_pred CceeEEEeecccCC----cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 161 STQASIEIDSLFEG----VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 161 ~~~~~~~i~~~~~~----~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
...+.+.++.+..+ .++...++ |++|+++++|+++++..+++++|+++++.+.+|+.|+||||+||+|+
T Consensus 270 ~~~~~i~i~~~~~d~~~~~~~~~~it-------R~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~ 342 (653)
T PRK13411 270 MLTTSINLPFITADETGPKHLEMELT-------RAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPA 342 (653)
T ss_pred CCceEEEEeeeccCCCCCeeEEEEEc-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcch
Confidence 98888888765432 34555555 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhccccee
Q psy4399 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 316 (379)
Q Consensus 237 v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~ 316 (379)
|++.|+++|++ ..+..+.||++|||+|||++|+++++. ++++++
T Consensus 343 v~~~l~~~f~~--------------------------------~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~ 386 (653)
T PRK13411 343 VQEAIQKFFGG--------------------------------KQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLL 386 (653)
T ss_pred HHHHHHHHcCC--------------------------------cCcCCCCCchHHHHHHHHHHHHhhcCC----ccceee
Confidence 99999999975 467778999999999999999999984 678999
Q ss_pred Eeeccc
Q psy4399 317 LDVTPQ 322 (379)
Q Consensus 317 ~~~~~~ 322 (379)
+|++|+
T Consensus 387 ~dv~p~ 392 (653)
T PRK13411 387 LDVTPL 392 (653)
T ss_pred eecccc
Confidence 999999
No 6
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.7e-54 Score=439.62 Aligned_cols=302 Identities=52% Similarity=0.822 Sum_probs=266.0
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.++.+++.++.++|||||++|+..||+++++|++.||++++++++||+|||++|+.... .+.++|
T Consensus 155 ~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-------~~~~vl 227 (673)
T PLN03184 155 QVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK-------SNETIL 227 (673)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC-------CCCEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999988654 467899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.|+..+||++||+.|++|+.+++..+++.++..+++.+.+|+.+||++|+.||.
T Consensus 228 V~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~ 307 (673)
T PLN03184 228 VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSS 307 (673)
T ss_pred EEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999888888888899999999999999999999
Q ss_pred CceeEEEeecccC----CcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 161 STQASIEIDSLFE----GVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 161 ~~~~~~~i~~~~~----~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
...+.+.++.+.. +.++...++ |++|+++++++++++..+++++|+++++.+.+|+.|+|+||+||+|.
T Consensus 308 ~~~~~i~i~~~~~~~~g~~~~~~~it-------R~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~ 380 (673)
T PLN03184 308 LTQTSISLPFITATADGPKHIDTTLT-------RAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPA 380 (673)
T ss_pred CCcceEEEEeeeccCCCCceEEEEEC-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHH
Confidence 9888888765432 234555666 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhccccee
Q psy4399 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 316 (379)
Q Consensus 237 v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~ 316 (379)
|++.|+++|+. .+....||++|||.|||++|+++++. ++++++
T Consensus 381 V~~~i~~~fg~---------------------------------~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~ 423 (673)
T PLN03184 381 VQELVKKLTGK---------------------------------DPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVL 423 (673)
T ss_pred HHHHHHHHhCC---------------------------------CcccccCcchHHHHHHHHHHHHhccC----ccceEE
Confidence 99999999973 56678899999999999999999984 568999
Q ss_pred EeecccccccccCCCCccccc------ccccccccccccccccchhhhhhhhcCceeeeecCCcc
Q psy4399 317 LDVTPQLAWRSFKNDSYGVDI------DTIMNNLAIKIPLQQVKNTVEELINEGHIYTTIDDNHY 375 (379)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~ip~~~~~~~~~~~~~~~~~~~t~~~~~~ 375 (379)
+|++|+ +||++. ..|+.|. ++|+. ....|+|..|||.
T Consensus 424 ~dv~p~---------slgi~~~~~~~~~ii~r~t--~iP~~-----------~~~~f~t~~d~q~ 466 (673)
T PLN03184 424 LDVTPL---------SLGLETLGGVMTKIIPRNT--TLPTS-----------KSEVFSTAADGQT 466 (673)
T ss_pred Eecccc---------cceEEecCCeeEEEEeCCC--cccee-----------cceEeeeecCCCc
Confidence 999999 555542 3455555 45542 3445666666553
No 7
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=2.9e-54 Score=439.18 Aligned_cols=271 Identities=57% Similarity=0.904 Sum_probs=250.2
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|||++|++.|+.++|.++.++|||||++|+..||+++++|++.||++++++++||+|||++|+.... .+.+++
T Consensus 157 ~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-------~~~~vl 229 (663)
T PTZ00400 157 FVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN-------DGKTIA 229 (663)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC-------CCcEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999988653 468999
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.|+..+||++||+.|++|+.+++.++++.++..+++.+.+|+.+||++|+.||.
T Consensus 230 V~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~ 309 (663)
T PTZ00400 230 VYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSS 309 (663)
T ss_pred EEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999888878888889999999999999999999
Q ss_pred CceeEEEeecccCC----cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 161 STQASIEIDSLFEG----VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 161 ~~~~~~~i~~~~~~----~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
+.++.+.++.+..+ .++...++ |++|+++++|+++++..++.++|+++++.+.+|+.|+||||+||+|+
T Consensus 310 ~~~~~i~i~~~~~d~~g~~~~~~~it-------R~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~ 382 (663)
T PTZ00400 310 KTQTEINLPFITADQSGPKHLQIKLS-------RAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPK 382 (663)
T ss_pred CCceEEEEEeeccCCCCceEEEEEEC-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChH
Confidence 88888887765433 24555555 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhccccee
Q psy4399 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 316 (379)
Q Consensus 237 v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~ 316 (379)
|++.|+++|+. ++....||++|||+|||++|+++++. .+++++
T Consensus 383 v~~~l~~~f~~---------------------------------~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~ 425 (663)
T PTZ00400 383 VSETVKKIFGK---------------------------------EPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLL 425 (663)
T ss_pred HHHHHHHHhCC---------------------------------CcccCCCCccceeeccHHHHHhhcCC----ccceEE
Confidence 99999999974 56678899999999999999999984 578999
Q ss_pred Eeeccc
Q psy4399 317 LDVTPQ 322 (379)
Q Consensus 317 ~~~~~~ 322 (379)
+|++|+
T Consensus 426 ~dv~p~ 431 (663)
T PTZ00400 426 LDVTPL 431 (663)
T ss_pred Eecccc
Confidence 999999
No 8
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=6.4e-54 Score=432.95 Aligned_cols=290 Identities=45% Similarity=0.688 Sum_probs=253.9
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.++.++|.++.++|||||++|+..||+++++|++.||++++++++||+|||++|+.... .+.+++
T Consensus 112 ~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-------~~~~vl 184 (599)
T TIGR01991 112 EILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA-------SEGIYA 184 (599)
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC-------CCCEEE
Confidence 5899999999999999999999999999999999999999999999999999999999999987754 467899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.++..+||++||+.|++++.+++. .+...+++.+.+|+.+||++|+.||.
T Consensus 185 V~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~ 260 (599)
T TIGR01991 185 VYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLG----ISADLNPEDQRLLLQAARAAKEALTD 260 (599)
T ss_pred EEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhC----CCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999986643 34456788889999999999999999
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
+..+.+.++. +|.++...++ |++|+++++|+++++...++++|+++++.+.+++.|+||||+||+|+|+++
T Consensus 261 ~~~~~i~i~~--~g~~~~~~it-------r~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~ 331 (599)
T TIGR01991 261 AESVEVDFTL--DGKDFKGKLT-------RDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRA 331 (599)
T ss_pred CceEEEEEEE--CCcEEEEEEe-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHH
Confidence 8888887764 5777777777 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcccceeEeec
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 320 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~~~~ 320 (379)
|++.|+. .+..+.||++|||.|||++|+.+++. +..++++++|++
T Consensus 332 l~~~f~~---------------------------------~~~~~~npdeaVA~GAai~a~~l~~~--~~~~~~~l~dv~ 376 (599)
T TIGR01991 332 VAELFGQ---------------------------------EPLTDIDPDQVVALGAAIQADLLAGN--RIGNDLLLLDVT 376 (599)
T ss_pred HHHHhCC---------------------------------CCCCCCCCcHHHHHHHHHHHHHhccc--cccCceEEEEee
Confidence 9999974 45667899999999999999999983 345689999999
Q ss_pred ccccccccCCCCcccccccccccccccccc
Q psy4399 321 PQLAWRSFKNDSYGVDIDTIMNNLAIKIPL 350 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~ 350 (379)
|+..+.... .|.....|++|+ ++|+
T Consensus 377 p~slgi~~~---~g~~~~ii~rnt--~iP~ 401 (599)
T TIGR01991 377 PLSLGIETM---GGLVEKIIPRNT--PIPV 401 (599)
T ss_pred eeeeEEEec---CCEEEEEEeCCC--cCCc
Confidence 993222221 122234566665 5554
No 9
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-54 Score=429.38 Aligned_cols=308 Identities=57% Similarity=0.863 Sum_probs=273.8
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++||+.++.++|.++.++|||||+||++.||+++++|++.||++++++++||+|||++|+.+.. ++..|+
T Consensus 103 ~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~-------~~~~vl 175 (579)
T COG0443 103 MILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG-------KEKTVL 175 (579)
T ss_pred HHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC-------CCcEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999876 678999
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.++..+||++||..|..++..+|.++.+.++..++..+.+|+..||++|+.||.
T Consensus 176 V~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~ 255 (579)
T COG0443 176 VYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSS 255 (579)
T ss_pred EEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
..++.+.++....+.++...++ |++|++++.+++.++..++.+++.+++++..+|+.|+|+||++|+|.|++.
T Consensus 256 ~~~~~i~~~~~~~~~~~~~~lt-------R~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~ 328 (579)
T COG0443 256 ATQTSINLPSIGGDIDLLKELT-------RAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQEL 328 (579)
T ss_pred ccccccchhhccccchhhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHH
Confidence 9999998877666655666666 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcccceeEeec
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 320 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~~~~ 320 (379)
++++|+ +++...+||+++||.|||++|..+++... +++++|++
T Consensus 329 v~~~f~---------------------------------~~~~~~inpdeava~GAa~qa~~l~~~~~----d~ll~Dv~ 371 (579)
T COG0443 329 VKEFFG---------------------------------KEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVI 371 (579)
T ss_pred HHHHhC---------------------------------ccccccCCccHHHHHHHHHHHHhhcCccc----CceEEeee
Confidence 999997 46788999999999999999999999533 99999999
Q ss_pred ccccccccCCCCcccccccccccccccccccccchhhhhhhhcCceeeeecCCcc
Q psy4399 321 PQLAWRSFKNDSYGVDIDTIMNNLAIKIPLQQVKNTVEELINEGHIYTTIDDNHY 375 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~~~~~~~~~~~~~~~~~~~t~~~~~~ 375 (379)
|+..+..... |+....|.+|.++|+ .++..|+|..|||-
T Consensus 372 plslgie~~~---~~~~~ii~rn~~iP~-------------~~~~~f~t~~d~q~ 410 (579)
T COG0443 372 PLSLGIETLG---GVRTPIIERNTTIPV-------------KKSQEFSTAADGQT 410 (579)
T ss_pred eeccccccCc---chhhhHHhcCCCCCc-------------ccceEEEeecCCCc
Confidence 9932221111 233344555553333 34456888888763
No 10
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.6e-53 Score=433.64 Aligned_cols=271 Identities=59% Similarity=0.943 Sum_probs=250.9
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.++.++|.++.++|||||++|+..||+++++|++.||++++++++||+|||++|+.... .+.+++
T Consensus 116 ~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-------~~~~vl 188 (627)
T PRK00290 116 MILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-------GDEKIL 188 (627)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC-------CCCEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999987653 468899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.++..+||++||+.|++++.+++..+++.++..+++.+.+|+.+||++|+.||.
T Consensus 189 V~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~ 268 (627)
T PRK00290 189 VYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSS 268 (627)
T ss_pred EEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999888888888889999999999999999999
Q ss_pred CceeEEEeecccCC----cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 161 STQASIEIDSLFEG----VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 161 ~~~~~~~i~~~~~~----~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
+..+.+.++.+..+ .++...++ |++|+++++++++++...++++|+++++.+.+|+.|+|+||+||+|.
T Consensus 269 ~~~~~i~i~~~~~d~~g~~~~~~~it-------R~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~ 341 (627)
T PRK00290 269 AQQTEINLPFITADASGPKHLEIKLT-------RAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPA 341 (627)
T ss_pred CCeEEEEEeecccCCCCCeEEEEEEC-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChH
Confidence 98888888765432 34555555 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhccccee
Q psy4399 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 316 (379)
Q Consensus 237 v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~ 316 (379)
|++.|++.|+ .++....||++|||.|||++|+++++. ++++++
T Consensus 342 v~~~l~~~fg---------------------------------~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~ 384 (627)
T PRK00290 342 VQELVKEFFG---------------------------------KEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLL 384 (627)
T ss_pred HHHHHHHHhC---------------------------------CCCCcCcCChHHHHHhHHHHHHHhcCC----ccceee
Confidence 9999999996 356778999999999999999999984 578999
Q ss_pred Eeeccc
Q psy4399 317 LDVTPQ 322 (379)
Q Consensus 317 ~~~~~~ 322 (379)
+|++|+
T Consensus 385 ~d~~~~ 390 (627)
T PRK00290 385 LDVTPL 390 (627)
T ss_pred eeccce
Confidence 999999
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=2.7e-53 Score=430.54 Aligned_cols=272 Identities=60% Similarity=0.936 Sum_probs=250.6
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.++.++|.++.++|||||++|+..||+++++|++.||++++++++||+|||++|+.... . .+.+++
T Consensus 113 ~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~-----~~~~vl 186 (595)
T TIGR02350 113 MILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS-K-----KDEKIL 186 (595)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc-C-----CCcEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999987652 1 468899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.|+..+||++||+.|++++.+++.++++.++..+++.+.+|+.+||++|+.||.
T Consensus 187 V~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~ 266 (595)
T TIGR02350 187 VFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSS 266 (595)
T ss_pred EEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999888888888889999999999999999999
Q ss_pred CceeEEEeecccCC----cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 161 STQASIEIDSLFEG----VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 161 ~~~~~~~i~~~~~~----~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
+..+.+.++.+..+ .++...++ |++|+++++|+++++...++++|+++++.+.+|+.|+|+||+||+|+
T Consensus 267 ~~~~~i~i~~~~~~~~g~~~~~~~it-------r~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~ 339 (595)
T TIGR02350 267 VLSTEINLPFITADASGPKHLEMTLT-------RAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPA 339 (595)
T ss_pred CCceEEEeeecccCCCCCeeEEEEEe-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChH
Confidence 98888888765432 34555555 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhccccee
Q psy4399 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 316 (379)
Q Consensus 237 v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~ 316 (379)
|++.|+++|+. ++....||++|||.|||++|+++++. ++++++
T Consensus 340 v~~~i~~~f~~---------------------------------~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~ 382 (595)
T TIGR02350 340 VQELVKDFFGK---------------------------------EPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLL 382 (595)
T ss_pred HHHHHHHHhCC---------------------------------cccCCcCcHHHHHHHHHHHHHHhcCC----ccccee
Confidence 99999999973 56778899999999999999999984 678999
Q ss_pred Eeeccc
Q psy4399 317 LDVTPQ 322 (379)
Q Consensus 317 ~~~~~~ 322 (379)
+|++|+
T Consensus 383 ~d~~~~ 388 (595)
T TIGR02350 383 LDVTPL 388 (595)
T ss_pred eecccc
Confidence 999999
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=6.5e-53 Score=428.09 Aligned_cols=271 Identities=59% Similarity=0.917 Sum_probs=249.5
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.|+.++|.++.++|||||++|++.||+++++|++.||++++++++||+|||++|+.... .+.+++
T Consensus 118 ~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-------~~~~vl 190 (621)
T CHL00094 118 QVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK-------NNETIL 190 (621)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC-------CCCEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999987643 467899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.++..+||++||+.|++++.+++.++++.++..+++.+.+|+.+||++|+.||.
T Consensus 191 V~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~ 270 (621)
T CHL00094 191 VFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSN 270 (621)
T ss_pred EEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999888888888889999999999999999999
Q ss_pred CceeEEEeecccCC----cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 161 STQASIEIDSLFEG----VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 161 ~~~~~~~i~~~~~~----~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
...+.+.++.+..+ .++...++ |++|+++++++++++..+++++|+++++.+.+|+.|+|+||+||+|.
T Consensus 271 ~~~~~i~i~~~~~~~~g~~~~~~~it-------R~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~ 343 (621)
T CHL00094 271 LTQTEINLPFITATQTGPKHIEKTLT-------RAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPA 343 (621)
T ss_pred CCceEEEEeecccCCCCCeeEEEEEc-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChH
Confidence 88888888765422 34555555 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhccccee
Q psy4399 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 316 (379)
Q Consensus 237 v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~ 316 (379)
|++.|+++|+. ++....||++|||+|||++|+++++. ++++++
T Consensus 344 v~~~l~~~fg~---------------------------------~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~ 386 (621)
T CHL00094 344 IQELVKKLLGK---------------------------------KPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILL 386 (621)
T ss_pred HHHHHHHHhCC---------------------------------CcCcCCCchhHHHhhhHHHHHHhcCC----ccceee
Confidence 99999999973 56678899999999999999999983 578999
Q ss_pred Eeeccc
Q psy4399 317 LDVTPQ 322 (379)
Q Consensus 317 ~~~~~~ 322 (379)
+|++|+
T Consensus 387 ~d~~~~ 392 (621)
T CHL00094 387 LDVTPL 392 (621)
T ss_pred eeeece
Confidence 999999
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=5.6e-53 Score=426.91 Aligned_cols=280 Identities=44% Similarity=0.716 Sum_probs=247.4
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.++.++|.++.++|||||++|++.||+++++|++.||++++++++||+|||++|+.... .+.+++
T Consensus 132 ~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-------~~~~vl 204 (616)
T PRK05183 132 EILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG-------QEGVIA 204 (616)
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC-------CCCEEE
Confidence 5899999999999999999999999999999999999999999999999999999999999987643 467899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.|+..+||++||+.|++++.+++. .+...+++.+.+|+.+||++|+.||.
T Consensus 205 V~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~ 280 (616)
T PRK05183 205 VYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG----LSPRLDPEDQRLLLDAARAAKEALSD 280 (616)
T ss_pred EEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999987764 33345778889999999999999999
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
+..+.+.+... ...+ ||++|+++++|+++++..+++++|+++++.+.+|+.|+|+||+||+|+|++.
T Consensus 281 ~~~~~i~i~~~------~~~i-------tr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~ 347 (616)
T PRK05183 281 ADSVEVSVALW------QGEI-------TREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREA 347 (616)
T ss_pred CceEEEEEecC------CCeE-------cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHH
Confidence 88888777421 1224 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcccceeEeec
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 320 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~~~~ 320 (379)
|+++|+. .+..+.||++|||+|||++|+++++. ...++++++|++
T Consensus 348 l~~~fg~---------------------------------~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~ 392 (616)
T PRK05183 348 VGEFFGR---------------------------------TPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVI 392 (616)
T ss_pred HHHHhcc---------------------------------CcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeec
Confidence 9999974 45567899999999999999999984 345689999999
Q ss_pred ccccccccCCCCcccc------cccccccccccccc
Q psy4399 321 PQLAWRSFKNDSYGVD------IDTIMNNLAIKIPL 350 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~------~~~i~~~~~~~ip~ 350 (379)
|+ ++|++ ...|++|+ ++|+
T Consensus 393 p~---------slgi~~~~g~~~~ii~r~t--~iP~ 417 (616)
T PRK05183 393 PL---------SLGLETMGGLVEKIIPRNT--TIPV 417 (616)
T ss_pred cc---------cccceecCCeEEEEEeCCC--cccc
Confidence 99 55554 23555665 5555
No 14
>KOG0101|consensus
Probab=100.00 E-value=5.5e-54 Score=416.89 Aligned_cols=324 Identities=76% Similarity=1.082 Sum_probs=295.6
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|.++++.++.++|.++.++|+|||++|+..||+++.+|+..||++++++++||+||+++|++.+... ...+|+
T Consensus 126 ~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~-----~~~~Vl 200 (620)
T KOG0101|consen 126 MVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVL-----GERNVL 200 (620)
T ss_pred hhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhcccccc-----ceeeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999776532 578899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|+|+||||||+|++.+.+|.+.+.++.++.++||++||+.+.+|+..+++++++.++..+.+.+++|+.+||++|+.||+
T Consensus 201 I~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~ 280 (620)
T KOG0101|consen 201 IFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSS 280 (620)
T ss_pred EEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
...+++.++.+.+|.++...++ |.+|++++.+++.++..++..+|+++.+.+.+|+.|+||||++|+|.++..
T Consensus 281 ~~~~~i~vdsL~~g~d~~~~it-------rarfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~l 353 (620)
T KOG0101|consen 281 STQASIEIDSLYEGIDFYTSIT-------RARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKL 353 (620)
T ss_pred cccceeccchhhccccccceee-------hhhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcccceeEeec
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 320 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~~~~ 320 (379)
++++|++ +++..++|||++||+|||+||+.++|..+..+++++++|+.
T Consensus 354 l~d~f~~--------------------------------k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~ 401 (620)
T KOG0101|consen 354 LEDFFNG--------------------------------KELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVA 401 (620)
T ss_pred HHHHhcc--------------------------------cccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecc
Confidence 9999986 78889999999999999999999999998888999999999
Q ss_pred ccccccccCCCCcccc------cccccccccccccccccc---------hhhhhhhhcCceeeeecCCccccCC
Q psy4399 321 PQLAWRSFKNDSYGVD------IDTIMNNLAIKIPLQQVK---------NTVEELINEGHIYTTIDDNHYQTVD 379 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~------~~~i~~~~~~~ip~~~~~---------~~~~~~~~~~~~~~t~~~~~~~~~~ 379 (379)
|+ +.|++ .-.|+.++ .+|+.+.+ ..+-..|+||..-.|.|+|++.+|+
T Consensus 402 pl---------~~gve~a~~~~~~~i~~~t--~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~fe 464 (620)
T KOG0101|consen 402 PL---------SLGVETAGGVFTVLIPRNT--SIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFE 464 (620)
T ss_pred cc---------cccccccCCcceeeeeccc--ccceeeeeeeeeecCCCCceeEEEEeccccccccccccceee
Confidence 99 44444 33455666 45553222 3344567888888888888776653
No 15
>KOG0102|consensus
Probab=100.00 E-value=2.8e-54 Score=403.79 Aligned_cols=296 Identities=57% Similarity=0.848 Sum_probs=268.9
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|.++++.|+++++.++...|+|||+||+..||+++++|.++||++++++++||+|||++|++++. .+..++
T Consensus 143 ~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iagl~vlrvineptaaalaygld~k-------~~g~ia 215 (640)
T KOG0102|consen 143 FVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKK-------EDGVIA 215 (640)
T ss_pred HHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhccccc-------CCCceE
Confidence 6899999999999999999999999999999999999999999999999999999999999999976 468899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|+|+||||||+|++.+.+++|++.++.+|..+||++||..+.+++..+|....+.++.++...+.+++..+|++|..||.
T Consensus 216 V~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs 295 (640)
T KOG0102|consen 216 VFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSS 295 (640)
T ss_pred EEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeecccCC----cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 161 STQASIEIDSLFEG----VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 161 ~~~~~~~i~~~~~~----~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
.....+.++....+ ..+...+ ||.+|++++.+++++.+.+++++|++++....||+.|+|+||++|+|.
T Consensus 296 ~~~tei~lp~iTada~gpkh~~i~~-------tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpk 368 (640)
T KOG0102|consen 296 RQQTEINLPFITADASGPKHLNIEL-------TRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPK 368 (640)
T ss_pred cccceeccceeeccCCCCeeEEEee-------cHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHH
Confidence 99999988876544 3344444 499999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhccccee
Q psy4399 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 316 (379)
Q Consensus 237 v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~ 316 (379)
+++.+++.|+. .+....||++|||.|||+++..|+|+ +++++|
T Consensus 369 v~s~V~e~fgk---------------------------------~p~~~vnPdeava~GAaiqggvl~ge----VkdvlL 411 (640)
T KOG0102|consen 369 VQSTVKELFGK---------------------------------GPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLL 411 (640)
T ss_pred HHHHHHHHhCC---------------------------------CCCCCcCCcchhccchhhccchhhcc----ccceee
Confidence 99999999984 66778999999999999999999996 799999
Q ss_pred EeecccccccccCCCCc-cccccccccccccccccc
Q psy4399 317 LDVTPQLAWRSFKNDSY-GVDIDTIMNNLAIKIPLQ 351 (379)
Q Consensus 317 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ip~~ 351 (379)
+||+||+.+ .++. |+....|++|+.+|..+.
T Consensus 412 LdVtpLsLg----ietlggvft~Li~rnttIptkks 443 (640)
T KOG0102|consen 412 LDVTPLSLG----IETLGGVFTKLIPRNTTIPTKKS 443 (640)
T ss_pred eecchHHHH----HHhhhhhheecccCCcccCchhh
Confidence 999999322 2232 344577888886555443
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=6.4e-51 Score=408.63 Aligned_cols=272 Identities=38% Similarity=0.580 Sum_probs=229.7
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|||++|++.|+.++|.++.++|||||++|++.||+++++|++.||++++++++||+|||++|+.... ....++
T Consensus 124 ~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-------~~~~vl 196 (595)
T PRK01433 124 EIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN-------QKGCYL 196 (595)
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC-------CCCEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999987643 356899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.|+..+||++||..|.+|+.+++.. ..+.. .++.||++|+.||.
T Consensus 197 V~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~ 266 (595)
T PRK01433 197 VYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDL------PNSID----TLQLAKKAKETLTY 266 (595)
T ss_pred EEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999877631 12222 23359999999987
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
...... ..+.+||++|+++++|+++++..+++++|++++ ..+|+.|+||||+||+|.|++.
T Consensus 267 ~~~~~~-----------------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~ 327 (595)
T PRK01433 267 KDSFNN-----------------DNISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDE 327 (595)
T ss_pred Cccccc-----------------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHH
Confidence 654211 034455999999999999999999999999998 5689999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcccceeEeec
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 320 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~~~~ 320 (379)
|+++|+. ++..+.||++|||+|||++|+.+++. ..+++++||+
T Consensus 328 l~~~f~~---------------------------------~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~ 370 (595)
T PRK01433 328 LYKAFKV---------------------------------DILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVV 370 (595)
T ss_pred HHHHhCC---------------------------------CceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEec
Confidence 9999973 55668899999999999999999874 3578999999
Q ss_pred ccccccccCCCCcccccccccccccccccc
Q psy4399 321 PQLAWRSFKNDSYGVDIDTIMNNLAIKIPL 350 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~ 350 (379)
|+..+.... .|.....|++|+ ++|+
T Consensus 371 p~slgi~~~---~g~~~~ii~rnt--~iP~ 395 (595)
T PRK01433 371 PLSLGMELY---GGIVEKIIMRNT--PIPI 395 (595)
T ss_pred ccceEEEec---CCEEEEEEECCC--cccc
Confidence 993322221 122234566666 5564
No 17
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=6.3e-51 Score=416.08 Aligned_cols=274 Identities=54% Similarity=0.873 Sum_probs=245.5
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.++.+++.++.++|||||++|+..||++|++||+.||++++++++||+|||++|+..... .+.++|
T Consensus 118 ~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~------~~~~vl 191 (602)
T PF00012_consen 118 MILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD------KGKTVL 191 (602)
T ss_dssp HHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS------SEEEEE
T ss_pred cchhhhcccchhhcccccccceeeechhhhhhhhhcccccccccccccceeecccccccccccccccc------ccccee
Confidence 58999999999999999999999999999999999999999999999999999999999999876552 478999
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||+|+|++++.++.+++++..++..+||++||..|++++.+++.++++.+...+++.+.+|+.+||++|+.||.
T Consensus 192 v~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~ 271 (602)
T PF00012_consen 192 VVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSS 271 (602)
T ss_dssp EEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccceEeeeehhcccccccccccccccccccceecceeecccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999998888888899999999999999999999
Q ss_pred --CceeEEEeecccC-CcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHH
Q psy4399 161 --STQASIEIDSLFE-GVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 237 (379)
Q Consensus 161 --~~~~~~~i~~~~~-~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v 237 (379)
+....+.++.+.+ |.++...++ |++|+++++|+++++...++++|++++....+|+.|+|+||+||+|+|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~it-------r~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v 344 (602)
T PF00012_consen 272 NDNTEITISIESLYDDGEDFSITIT-------REEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYV 344 (602)
T ss_dssp SSSSEEEEEEEEEETTTEEEEEEEE-------HHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHH
T ss_pred ccccccccccccccccccccccccc-------cceecccccccccccccccccccccccccccccceeEEecCcccchhh
Confidence 6667777776665 667777777 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcccceeE
Q psy4399 238 QKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 317 (379)
Q Consensus 238 ~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~ 317 (379)
++.|++.|+. .+..+.||++|||.|||++|+.+++ .+..+++.+.
T Consensus 345 ~~~l~~~f~~---------------------------------~~~~~~~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~ 389 (602)
T PF00012_consen 345 QEALKELFGK---------------------------------KISKSVNPDEAVARGAALYAAILSG--SFRVKDIKII 389 (602)
T ss_dssp HHHHHHHTTS---------------------------------EEB-SS-TTTHHHHHHHHHHHHHHT--SCSSTSSCES
T ss_pred hhhhhhcccc---------------------------------ccccccccccccccccccchhhhcc--cccccccccc
Confidence 9999999973 5667889999999999999999998 4667889999
Q ss_pred eeccc
Q psy4399 318 DVTPQ 322 (379)
Q Consensus 318 ~~~~~ 322 (379)
|++|+
T Consensus 390 d~~~~ 394 (602)
T PF00012_consen 390 DVTPF 394 (602)
T ss_dssp EBESS
T ss_pred ccccc
Confidence 99998
No 18
>KOG0103|consensus
Probab=100.00 E-value=2.8e-48 Score=373.61 Aligned_cols=304 Identities=41% Similarity=0.665 Sum_probs=284.5
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|.+|++.|++.+..++.++||+||+||++.||+++.+|++.|||+++++++|-+|+|++|++.+..-+....++.+|+
T Consensus 120 m~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~ 199 (727)
T KOG0103|consen 120 MLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVV 199 (727)
T ss_pred HHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999886665666688999
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
++|+|.+.+.+|++.+..|.+.++++.++..+||++||+.|.+|+..+|+.+++.+...++++..||+.+||+.|+.||.
T Consensus 200 fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSA 279 (727)
T KOG0103|consen 200 FVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSA 279 (727)
T ss_pred EEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
+....++++.++++.|.+..++ |++|++++.|+++++..++.++|+++++..+||+.|.+|||+||+|.|.+.
T Consensus 280 N~~~plNIEcfM~d~dvs~~i~-------ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~ 352 (727)
T KOG0103|consen 280 NTELPLNIECFMNDKDVSSKIK-------REEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEM 352 (727)
T ss_pred CcCCCcchhheeecchhhhhcc-------HHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcccceeEeec
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 320 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~~~~ 320 (379)
|.++|+ +++..+.|.++|||+||||++|+||+ -++++.+-+.|+.
T Consensus 353 Is~~Fg---------------------------------ke~s~TlN~dEavarG~ALqcAIlSP--~frVRef~v~Di~ 397 (727)
T KOG0103|consen 353 ISDFFG---------------------------------KELSRTLNQDEAVARGAALQCAILSP--TFRVREFSVEDIV 397 (727)
T ss_pred HHHHhC---------------------------------CcccccccHHHHHHHhHHHHHHhcCc--cccceecceeccc
Confidence 999998 57888999999999999999999999 7889999999999
Q ss_pred cc---ccccccCCCCccccccccccccccc
Q psy4399 321 PQ---LAWRSFKNDSYGVDIDTIMNNLAIK 347 (379)
Q Consensus 321 ~~---~~~~~~~~~~~~~~~~~i~~~~~~~ 347 (379)
|+ +.|.....+. |-.+.+++.++.+|
T Consensus 398 pysIs~~w~~~~ed~-~~~~evF~~~~~~p 426 (727)
T KOG0103|consen 398 PYSISLRWVKQGEDG-GSVTEVFPKGHPSP 426 (727)
T ss_pred ceeEEEEeccccccC-CCceeeecCCCCCC
Confidence 98 5677766654 43356666666444
No 19
>KOG0104|consensus
Probab=100.00 E-value=6.8e-45 Score=351.22 Aligned_cols=288 Identities=36% Similarity=0.578 Sum_probs=267.1
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|.|.+..|+.+...+++++|||||.+|+..+|+++.+|+++||++++.+|+|..|+|+.|++.+.-. ......++|
T Consensus 141 Mil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~--i~~~~q~~i 218 (902)
T KOG0104|consen 141 MILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKE--INETPQHYI 218 (902)
T ss_pred HHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhcccc--CCCCceEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999986322 123578999
Q ss_pred EEEcCCceeEEEEEEEe------C----CeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhc--cCccccHHHHHHHH
Q psy4399 81 IFDLGGGTFDVSILTIE------D----GIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK--KDLTTNKRALRRLR 148 (379)
Q Consensus 81 VvD~GggT~disv~~~~------~----~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~ 148 (379)
|||||+|.|.++++.+. . ..+++++++.+..|||..|+.+|.++|...|.+..+ .++..+++++.+|.
T Consensus 219 ~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~ 298 (902)
T KOG0104|consen 219 FYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLN 298 (902)
T ss_pred EEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHH
Confidence 99999999999999874 1 378999999999999999999999999999998775 46778899999999
Q ss_pred HHHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEE
Q psy4399 149 TACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLV 228 (379)
Q Consensus 149 ~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLv 228 (379)
++|+++|..||.+.++..+++.+.++.||...+| |++|+++|+++..++..+|.++|..++++.++|+.|+|.
T Consensus 299 keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvT-------Re~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~ 371 (902)
T KOG0104|consen 299 KEAERLKQVLSANSEAFAQIESLIDDIDFRLKVT-------REEFEELCADLEERIVEPINDALKKAQLSLDEINQVILF 371 (902)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHhhcccccccee-------HHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEe
Confidence 9999999999999999999999999999988888 999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCc
Q psy4399 229 GGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKS 308 (379)
Q Consensus 229 GG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~ 308 (379)
||++|+|.||+.|.++.+. .++...+|.|+|+++||+++||.||. +
T Consensus 372 Gg~TRVP~VQe~l~k~v~~--------------------------------~ei~knlNaDEA~vmGav~~aA~LSk--s 417 (902)
T KOG0104|consen 372 GGATRVPKVQETLIKAVGK--------------------------------EELGKNLNADEAAVMGAVYQAAHLSK--S 417 (902)
T ss_pred cCcccCchHHHHHHHHHhH--------------------------------HHHhcccChhHHHHHHHHHHHHhhcc--c
Confidence 9999999999999999987 78889999999999999999999998 9
Q ss_pred hhcccceeEeecccccccccCCC
Q psy4399 309 EEVQDLLLLDVTPQLAWRSFKND 331 (379)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~ 331 (379)
++++.+.+.|..++....+|..+
T Consensus 418 FKvKpf~V~D~~~yp~~v~f~~~ 440 (902)
T KOG0104|consen 418 FKVKPFNVVDASVYPYLVEFETE 440 (902)
T ss_pred ccccceeeeecccccEEEEeccC
Confidence 99999999999987655555554
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=3e-42 Score=334.88 Aligned_cols=250 Identities=25% Similarity=0.357 Sum_probs=208.2
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCC-----HHHHHH---HHHHHHHcCCceeeeccchHHHHHHhccccccCCCC
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFN-----DSQRQA---TKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAA 72 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~-----~~~r~~---l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~ 72 (379)
+||++||+.++.++|.++.++|||||++|+ +.||++ |++|++.||++++++++||+|||++|+....
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----- 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----- 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-----
Confidence 589999999999999999999999999998 677665 7999999999999999999999999986533
Q ss_pred CCCCceEEEEEcCCceeEEEEEEEeCC-------eEEEEEecCCCCCCHHHHHHHHH-HHHHHHHHHHh----ccC----
Q psy4399 73 GSGERNVLIFDLGGGTFDVSILTIEDG-------IFEVKSTAGDTHLGGEDFDNRMV-NHFVQEFKRKY----KKD---- 136 (379)
Q Consensus 73 ~~~~~~vlVvD~GggT~disv~~~~~~-------~~~~~~~~~~~~lGG~~id~~l~-~~l~~~~~~~~----~~~---- 136 (379)
.+..+||+|+||||+|+|++++.++ ..+++++.| ..+||++||..|+ +++...+.... +.+
T Consensus 207 --~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~ 283 (450)
T PRK11678 207 --EEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSL 283 (450)
T ss_pred --CCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcch
Confidence 5788999999999999999998653 367899888 6899999999998 57777664211 100
Q ss_pred ----------c---------------------cccHHHH------------HHHHHHHHHHhhhcCCCceeEEEeecccC
Q psy4399 137 ----------L---------------------TTNKRAL------------RRLRTACERAKRTLSSSTQASIEIDSLFE 173 (379)
Q Consensus 137 ----------~---------------------~~~~~~~------------~~L~~~~e~~K~~ls~~~~~~~~i~~~~~ 173 (379)
+ ..+++.+ .+|+.+||++|+.||...++.+.++...
T Consensus 284 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~- 362 (450)
T PRK11678 284 PFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS- 362 (450)
T ss_pred hhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC-
Confidence 0 0122222 3678899999999999999988887543
Q ss_pred CcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccc
Q psy4399 174 GVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 253 (379)
Q Consensus 174 ~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~ 253 (379)
.++...++ |++|+++++++++++...++++|++++.. ++.|+||||+|++|.|++.+++.|+.
T Consensus 363 -~~~~~~It-------R~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~------ 425 (450)
T PRK11678 363 -DGLATEIS-------QQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPG------ 425 (450)
T ss_pred -CCcceeeC-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCC------
Confidence 33444555 99999999999999999999999999876 58999999999999999999999985
Q ss_pred cCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHH
Q psy4399 254 INPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 303 (379)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l 303 (379)
. .....+|.++||.|+|++|+.+
T Consensus 426 --------------------------~-~v~~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 426 --------------------------I-PIVGGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred --------------------------C-cEEeCCCcchHHHHHHHHHHhh
Confidence 2 3445699999999999999753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1.7e-33 Score=266.92 Aligned_cols=237 Identities=22% Similarity=0.359 Sum_probs=184.5
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 2 iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
+|+++.+.+..........+++|||++|+..+|+++++|++.||++.+.+++||+|||++|+.+.. ++..++|
T Consensus 79 ~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-------~~~~~lV 151 (336)
T PRK13928 79 MLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS-------QPSGNMV 151 (336)
T ss_pred HHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc-------CCCeEEE
Confidence 456666544322223344799999999999999999999999999999999999999999988543 4567899
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC
Q psy4399 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 161 (379)
Q Consensus 82 vD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~ 161 (379)
||+||||||+++++... .. ..++..+||++||+.|.+++.+++..... ...||++|+.++..
T Consensus 152 vDiGggttdvsvv~~g~-~~----~~~~~~lGG~did~~i~~~l~~~~~~~~~-------------~~~ae~lK~~~~~~ 213 (336)
T PRK13928 152 VDIGGGTTDIAVLSLGG-IV----TSSSIKVAGDKFDEAIIRYIRKKYKLLIG-------------ERTAEEIKIKIGTA 213 (336)
T ss_pred EEeCCCeEEEEEEEeCC-EE----EeCCcCCHHHHHHHHHHHHHHHHhchhcC-------------HHHHHHHHHHhccc
Confidence 99999999999999632 21 24568999999999999999877642110 23789999987643
Q ss_pred c----eeEEEeec--ccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhc--CCcCCcC-EEEEEcCCC
Q psy4399 162 T----QASIEIDS--LFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAK--MDKAQIH-DIVLVGGST 232 (379)
Q Consensus 162 ~----~~~~~i~~--~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~--~~~~~i~-~VvLvGG~s 232 (379)
. ...+.+.+ ...+.+.. +.+++++|++++++.++++.+.+++.|+.++ +....++ .|+|+||+|
T Consensus 214 ~~~~~~~~~~v~g~~~~~~~~~~-------~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s 286 (336)
T PRK13928 214 FPGAREEEMEIRGRDLVTGLPKT-------ITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGA 286 (336)
T ss_pred ccccCCcEEEEecccccCCCceE-------EEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECccc
Confidence 1 12233221 12233333 3455999999999999999999999999886 3345677 799999999
Q ss_pred ChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHH
Q psy4399 233 RIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 303 (379)
Q Consensus 233 r~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l 303 (379)
++|++++++++.|+ .++....||++|||.|||+++..+
T Consensus 287 ~ipgi~e~l~~~~~---------------------------------~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 287 LLHGLDKLLAEETK---------------------------------VPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred chhhHHHHHHHHHC---------------------------------CCceecCCHHHHHHHHHHHHHhch
Confidence 99999999999997 356677899999999999998765
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=2.9e-32 Score=257.96 Aligned_cols=237 Identities=21% Similarity=0.377 Sum_probs=188.0
Q ss_pred ChHHHHHHHHHHHcCCCCC--cEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCce
Q psy4399 1 MVLTKMKETAEAYLGKTVS--NAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN 78 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~--~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~ 78 (379)
++|+++++.++..++..+. .+|+|+|++|+..||+++.+|++.||++.+.+++||+|||++|+.... .+..
T Consensus 79 ~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-------~~~~ 151 (335)
T PRK13929 79 DLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVD-------EPVA 151 (335)
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcC-------CCce
Confidence 3789999998888887654 799999999999999999999999999999999999999999977543 4577
Q ss_pred EEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhc
Q psy4399 79 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTL 158 (379)
Q Consensus 79 vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l 158 (379)
++|+|+||||||++++++.+ .. ..++..+||++||+.|.+++.+.+. ... + ...||++|+.+
T Consensus 152 ~lvvDiG~gtt~v~vi~~~~-~~----~~~~~~~GG~~id~~l~~~l~~~~~----~~~--~-------~~~AE~iK~~l 213 (335)
T PRK13929 152 NVVVDIGGGTTEVAIISFGG-VV----SCHSIRIGGDQLDEDIVSFVRKKYN----LLI--G-------ERTAEQVKMEI 213 (335)
T ss_pred EEEEEeCCCeEEEEEEEeCC-EE----EecCcCCHHHHHHHHHHHHHHHHhC----cCc--C-------HHHHHHHHHHH
Confidence 99999999999999998633 22 2455789999999999999976553 111 1 24799999999
Q ss_pred CCCc----eeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCC--cCCcC-EEEEEcCC
Q psy4399 159 SSST----QASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIH-DIVLVGGS 231 (379)
Q Consensus 159 s~~~----~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~VvLvGG~ 231 (379)
+... ...+.+. +.++..... ..+.+++++|.+++.+.+.++.+.+.+.|++++.. ...++ .|+|+||+
T Consensus 214 ~~~~~~~~~~~~~v~----g~~~~~~~p-~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~ 288 (335)
T PRK13929 214 GYALIEHEPETMEVR----GRDLVTGLP-KTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGG 288 (335)
T ss_pred cCCCCCCCCceEEEe----CCccCCCCC-eEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchh
Confidence 7631 1222222 111111111 23456699999999999999999999999988643 35577 69999999
Q ss_pred CChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 232 TRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 232 sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
|++|++.+++++.|+ .++....||+++||.||+..-
T Consensus 289 s~lpgl~e~l~~~~~---------------------------------~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 289 ALLNGIKEWLSEEIV---------------------------------VPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred hhhhhHHHHHHHHHC---------------------------------CCceeCCCHHHHHHHHHHHHH
Confidence 999999999999997 356667899999999999763
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.3e-31 Score=251.45 Aligned_cols=236 Identities=22% Similarity=0.384 Sum_probs=180.6
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 2 iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
+++++........ .....+|+|+|++|+..+|+++++|++.||++.+.+++||+|||++|+.... ++..++|
T Consensus 81 ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~-------~~~~~lv 152 (334)
T PRK13927 81 MLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVT-------EPTGSMV 152 (334)
T ss_pred HHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCccc-------CCCeEEE
Confidence 4555555443332 2224899999999999999999999999999999999999999999987543 4567899
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC
Q psy4399 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 161 (379)
Q Consensus 82 vD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~ 161 (379)
||+||||||+++++..+.. ..+...+||++||+.|.+++.+++. ... + ...+|++|+.++..
T Consensus 153 vDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~----~~~--~-------~~~ae~iK~~~~~~ 214 (334)
T PRK13927 153 VDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYN----LLI--G-------ERTAERIKIEIGSA 214 (334)
T ss_pred EEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhC----cCc--C-------HHHHHHHHHHhhcc
Confidence 9999999999999864322 2345789999999999999976553 111 1 23689999988753
Q ss_pred ce----eEEEee--cccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCC--cCCcC-EEEEEcCCC
Q psy4399 162 TQ----ASIEID--SLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIH-DIVLVGGST 232 (379)
Q Consensus 162 ~~----~~~~i~--~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~VvLvGG~s 232 (379)
.. ..+.+. ....+.+.. +.++|++|++++.+.++++.+.+.++|++++.. ...++ .|+|+||+|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s 287 (334)
T PRK13927 215 YPGDEVLEMEVRGRDLVTGLPKT-------ITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGA 287 (334)
T ss_pred CCCCCCceEEEeCcccCCCCCeE-------EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchh
Confidence 21 223322 111233333 445599999999999999999999999988643 22334 599999999
Q ss_pred ChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHH
Q psy4399 233 RIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 303 (379)
Q Consensus 233 r~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l 303 (379)
++|+++++|++.|+ .++....||+++||.||++++..+
T Consensus 288 ~ipgl~~~l~~~~~---------------------------------~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 288 LLRGLDKLLSEETG---------------------------------LPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred hhhHHHHHHHHHHC---------------------------------CCcEecCCHHHHHHHHHHHHHhhH
Confidence 99999999999996 356778899999999999998753
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.98 E-value=1.6e-31 Score=240.22 Aligned_cols=195 Identities=23% Similarity=0.370 Sum_probs=165.7
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
++|++|++.++..++.++.++|+|||++|++.||+++.+|++.||++++.++.||.|++++|... ..+
T Consensus 44 ~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------------~~~ 111 (239)
T TIGR02529 44 EIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------------NGA 111 (239)
T ss_pred HHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------------CcE
Confidence 47999999999999999999999999999999999999999999999999999999999988532 149
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|+|+||||||+++++ .+... . .++..+||++||+.|.+.+.-.+ .+||++|+.++.
T Consensus 112 vvDiGggtt~i~i~~--~G~i~--~-~~~~~~GG~~it~~Ia~~~~i~~-------------------~~AE~~K~~~~~ 167 (239)
T TIGR02529 112 VVDVGGGTTGISILK--KGKVI--Y-SADEPTGGTHMSLVLAGAYGISF-------------------EEAEEYKRGHKD 167 (239)
T ss_pred EEEeCCCcEEEEEEE--CCeEE--E-EEeeecchHHHHHHHHHHhCCCH-------------------HHHHHHHHhcCC
Confidence 999999999999987 44322 2 34578999999999876553111 388999987431
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
.+++.+++++.++++.+.+++.|++.+ ++.|+|+||+|++|++++.
T Consensus 168 -----------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~~~v~LtGG~a~ipgl~e~ 213 (239)
T TIGR02529 168 -----------------------------EEEIFPVVKPVYQKMASIVKRHIEGQG-----VKDLYLVGGACSFSGFADV 213 (239)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCEEEEECchhcchhHHHH
Confidence 456778899999999999999998643 5789999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHH
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAV 298 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~ 298 (379)
+++.|+ .++..+.||++++|.|||+
T Consensus 214 l~~~lg---------------------------------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 214 FEKQLG---------------------------------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHhC---------------------------------CCcccCCCCCeehhheeec
Confidence 999997 4667788999999999986
No 25
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.97 E-value=4.9e-30 Score=243.13 Aligned_cols=238 Identities=24% Similarity=0.368 Sum_probs=179.4
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 2 iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
+++|+........+.....+|+|+|++|+..+|++++++++.||++.+.+++||+|||++|+.... .+..++|
T Consensus 82 ~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-------~~~~~lV 154 (333)
T TIGR00904 82 MIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE-------EPTGSMV 154 (333)
T ss_pred HHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc-------CCceEEE
Confidence 455555444332222233899999999999999999999999999999999999999999976533 4567899
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC
Q psy4399 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 161 (379)
Q Consensus 82 vD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~ 161 (379)
+|+||||||+++++..+.. ..++..+||++||+.|.+++.+++. .... +..||++|+.++..
T Consensus 155 vDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~~~----~~~~---------~~~ae~lK~~l~~~ 216 (333)
T TIGR00904 155 VDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRTYN----LLIG---------EQTAERIKIEIGSA 216 (333)
T ss_pred EEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHHhc----ccCC---------HHHHHHHHHHHhcc
Confidence 9999999999999874322 2355789999999999999886653 1111 24789999998653
Q ss_pred ce-----eEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCc-CCc-C-EEEEEcCCCC
Q psy4399 162 TQ-----ASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDK-AQI-H-DIVLVGGSTR 233 (379)
Q Consensus 162 ~~-----~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~-~~i-~-~VvLvGG~sr 233 (379)
.. ..+.+. +.+....++ ....++++++.+++.+.++++.+.+.+.++.++... .++ + .|+|+||+|+
T Consensus 217 ~~~~~~~~~~~~~----~~~~~~~~~-~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ 291 (333)
T TIGR00904 217 YPLNDEPRKMEVR----GRDLVTGLP-RTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGAL 291 (333)
T ss_pred ccccccccceeec----CccccCCCC-eEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccc
Confidence 21 122221 111111111 123455999999999999999999999999876432 233 3 6999999999
Q ss_pred hHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHH
Q psy4399 234 IPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 302 (379)
Q Consensus 234 ~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~ 302 (379)
+|.++++|++.|+ .++....||+++||.||++++..
T Consensus 292 ipgl~e~l~~~~~---------------------------------~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 292 LRNLDKLLSKETG---------------------------------LPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred hhhHHHHHHHHHC---------------------------------CCceecCChHHHHHHHHHHHHhC
Confidence 9999999999997 46777889999999999998754
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=6.8e-30 Score=242.65 Aligned_cols=237 Identities=23% Similarity=0.338 Sum_probs=182.7
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 2 iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
+|+++.+.+..........+|+|+|++|+..+|+++.++++.+|++.+.+++||+|||++++.... +...++|
T Consensus 84 ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~-------~~~~~lV 156 (335)
T PRK13930 84 MLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT-------EPVGNMV 156 (335)
T ss_pred HHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC-------CCCceEE
Confidence 577777666554444467899999999999999999999999999999999999999999876533 3456799
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC
Q psy4399 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 161 (379)
Q Consensus 82 vD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~ 161 (379)
||+||||||++++..... . ..+...+||.+||+.|.+++.+++. .... ...||++|+.++..
T Consensus 157 vDiG~gttdvs~v~~g~~----~-~~~~~~lGG~~id~~l~~~l~~~~~----~~~~---------~~~ae~~K~~~~~~ 218 (335)
T PRK13930 157 VDIGGGTTEVAVISLGGI----V-YSESIRVAGDEMDEAIVQYVRRKYN----LLIG---------ERTAEEIKIEIGSA 218 (335)
T ss_pred EEeCCCeEEEEEEEeCCE----E-eecCcCchhHHHHHHHHHHHHHHhC----CCCC---------HHHHHHHHHHhhcC
Confidence 999999999999985322 1 2455899999999999999977643 1111 13789999998753
Q ss_pred ce----eEEEeec--ccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCC--cCCcCE-EEEEcCCC
Q psy4399 162 TQ----ASIEIDS--LFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIHD-IVLVGGST 232 (379)
Q Consensus 162 ~~----~~~~i~~--~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-VvLvGG~s 232 (379)
.. ..+.+.. ...+.+. .+.+++++|++++.+.++++.+.+.+.+++++.. ...++. |+|+||+|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s 291 (335)
T PRK13930 219 YPLDEEESMEVRGRDLVTGLPK-------TIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGA 291 (335)
T ss_pred cCCCCCceEEEECccCCCCCCe-------eEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchh
Confidence 22 1222221 1112222 3445599999999999999999999999986533 223454 99999999
Q ss_pred ChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHH
Q psy4399 233 RIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 303 (379)
Q Consensus 233 r~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l 303 (379)
++|+++++|++.|+ .++....+|++|||.||++.+...
T Consensus 292 ~ipg~~~~l~~~~~---------------------------------~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 292 LLRGLDKLLSEETG---------------------------------LPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred cchhHHHHHHHHHC---------------------------------CCceecCCHHHHHHHHHHHHHhCh
Confidence 99999999999997 356677799999999999998643
No 27
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=6.9e-28 Score=220.40 Aligned_cols=196 Identities=25% Similarity=0.402 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 2 iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
.|+++++.++.++|.++..++++||++|+..+|+++.++++.||++...+++||.|++.+|... ..++
T Consensus 72 ~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------------~~~v 139 (267)
T PRK15080 72 IVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------------NGAV 139 (267)
T ss_pred HHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC------------CcEE
Confidence 5789999999999999999999999999999999999999999999999999999999887442 1489
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC
Q psy4399 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 161 (379)
Q Consensus 82 vD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~ 161 (379)
+|+||||||+++++ ++.... .++..+||++||+.|++++.-. +.+||++|+.++
T Consensus 140 vDIGggtt~i~v~~--~g~~~~---~~~~~~GG~~it~~Ia~~l~i~-------------------~~eAE~lK~~~~-- 193 (267)
T PRK15080 140 VDIGGGTTGISILK--DGKVVY---SADEPTGGTHMSLVLAGAYGIS-------------------FEEAEQYKRDPK-- 193 (267)
T ss_pred EEeCCCcEEEEEEE--CCeEEE---EecccCchHHHHHHHHHHhCCC-------------------HHHHHHHHhccC--
Confidence 99999999999986 453322 2457999999999998776322 237888887642
Q ss_pred ceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHH
Q psy4399 162 TQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 241 (379)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l 241 (379)
+ ++++.+++++.++++.+.+++.++.. +++.|+|+||+|++|++++.+
T Consensus 194 --------------------~-------~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l 241 (267)
T PRK15080 194 --------------------H-------HKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVF 241 (267)
T ss_pred --------------------C-------HHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHH
Confidence 1 67889999999999999999999864 468999999999999999999
Q ss_pred HHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 242 QDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 242 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
++.|+ .++....||++++|.|||+++
T Consensus 242 ~~~lg---------------------------------~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 242 EKQTG---------------------------------LPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHhC---------------------------------CCcccCCCchHHHHHHHHhhC
Confidence 99997 456678899999999999874
No 28
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.95 E-value=3.4e-27 Score=218.95 Aligned_cols=234 Identities=26% Similarity=0.389 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 2 iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
+|+++.+.+.......-..++++||+.-+..+|+++.+|+..||.+.+.+++||.|||+..+.+-. +....||
T Consensus 77 ~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~-------~~~g~mi 149 (326)
T PF06723_consen 77 MLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIF-------EPRGSMI 149 (326)
T ss_dssp HHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TT-------SSS-EEE
T ss_pred HHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCC-------CCCceEE
Confidence 456666655543222344899999999999999999999999999999999999999999988754 5678899
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC
Q psy4399 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 161 (379)
Q Consensus 82 vD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~ 161 (379)
+|+||||||++++.. ++...... ..+||++||+.|.+|+.+++.- .+ =...||++|+.++..
T Consensus 150 VDIG~GtTdiavisl-ggiv~s~s----i~~gG~~~DeaI~~~ir~~y~l----~I---------g~~tAE~iK~~~g~~ 211 (326)
T PF06723_consen 150 VDIGGGTTDIAVISL-GGIVASRS----IRIGGDDIDEAIIRYIREKYNL----LI---------GERTAEKIKIEIGSA 211 (326)
T ss_dssp EEE-SS-EEEEEEET-TEEEEEEE----ES-SHHHHHHHHHHHHHHHHSE----E-----------HHHHHHHHHHH-BS
T ss_pred EEECCCeEEEEEEEC-CCEEEEEE----EEecCcchhHHHHHHHHHhhCc----cc---------CHHHHHHHHHhccee
Confidence 999999999999985 32222222 6899999999999999988751 11 123789999998642
Q ss_pred c----eeEEEee--cccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCc-CCc--CEEEEEcCCC
Q psy4399 162 T----QASIEID--SLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDK-AQI--HDIVLVGGST 232 (379)
Q Consensus 162 ~----~~~~~i~--~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~-~~i--~~VvLvGG~s 232 (379)
. ...+.+. ....|.+....++ .+++.+.+.+.+.++.+.++++|+...... .|| +.|+|+||+|
T Consensus 212 ~~~~~~~~~~v~Grd~~tGlP~~~~i~-------~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga 284 (326)
T PF06723_consen 212 SPPEEEESMEVRGRDLITGLPKSIEIT-------SSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGA 284 (326)
T ss_dssp S--HHHHEEEEEEEETTTTCEEEEEEE-------HHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGG
T ss_pred eccCCCceEEEECccccCCCcEEEEEc-------HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhh
Confidence 2 2233333 2345555656666 999999999999999999999999764431 132 4699999999
Q ss_pred ChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 233 RIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 233 r~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
+++++.++|++.++ .++....||..+||.||....
T Consensus 285 ~l~Gl~~~i~~~~~---------------------------------~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 285 LLRGLDEYISEETG---------------------------------VPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp GSBTHHHHHHHHHS---------------------------------S-EEE-SSTTTHHHHHHHHTT
T ss_pred hhccHHHHHHHHHC---------------------------------CCEEEcCCHHHHHHHHHHHHH
Confidence 99999999999997 578889999999999998654
No 29
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.91 E-value=2.8e-23 Score=186.13 Aligned_cols=240 Identities=22% Similarity=0.363 Sum_probs=183.9
Q ss_pred hHHHHHHHHHHHcC-CCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 2 VLTKMKETAEAYLG-KTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 2 iL~~l~~~a~~~~~-~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
+|+|+.+......+ ...-.+++++|..-+..+|+++++|++.||.+.+.+++||.|||+..+..-. .+..-|
T Consensus 84 ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~-------ep~G~m 156 (342)
T COG1077 84 MLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIM-------EPTGSM 156 (342)
T ss_pred HHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCccc-------CCCCCE
Confidence 46666666653323 3344799999999999999999999999999999999999999998877644 344569
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||++++.+.+ ... .....+||+.||+.+.+|+.++|+-..+ .+.+|++|.....
T Consensus 157 vvDIGgGTTevaVISlgg-iv~----~~Sirv~GD~~De~Ii~yvr~~~nl~IG-------------e~taE~iK~eiG~ 218 (342)
T COG1077 157 VVDIGGGTTEVAVISLGG-IVS----SSSVRVGGDKMDEAIIVYVRKKYNLLIG-------------ERTAEKIKIEIGS 218 (342)
T ss_pred EEEeCCCceeEEEEEecC-EEE----EeeEEEecchhhHHHHHHHHHHhCeeec-------------HHHHHHHHHHhcc
Confidence 999999999999999843 222 2226899999999999999988762211 1268888887654
Q ss_pred Cce------eEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCC--cCCcCE-EEEEcCC
Q psy4399 161 STQ------ASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIHD-IVLVGGS 231 (379)
Q Consensus 161 ~~~------~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-VvLvGG~ 231 (379)
... .++.+ .|.+....++ ..+.++.+++.+.+++.++.|++.++..|+..... .+-++. ++|+||+
T Consensus 219 a~~~~~~~~~~~eV----~Grdl~~GlP-k~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGG 293 (342)
T COG1077 219 AYPEEEDEELEMEV----RGRDLVTGLP-KTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGG 293 (342)
T ss_pred cccccCCccceeeE----EeeecccCCC-eeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecch
Confidence 221 11222 2344433333 44556699999999999999999999999986543 222455 9999999
Q ss_pred CChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHh
Q psy4399 232 TRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 304 (379)
Q Consensus 232 sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~ 304 (379)
|.+..+.+.+++..+ .++....+|-.+||.|+....+.+.
T Consensus 294 alLrglD~~i~~et~---------------------------------~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 294 ALLRGLDRLLSEETG---------------------------------VPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHhcCchHhHHhccC---------------------------------CeEEECCChHHHHHhccchhhhhhH
Confidence 999999999999886 4677788999999999998887664
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.89 E-value=2.7e-22 Score=192.86 Aligned_cols=207 Identities=23% Similarity=0.350 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCC
Q psy4399 31 DSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT 110 (379)
Q Consensus 31 ~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~ 110 (379)
....+.+.+|++.||+++..++.||.|+|++|+.... ++..++|+|+||||||+++++ ++.... ....
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-------~~~~~~vvDiG~gtt~i~i~~--~g~~~~---~~~i 224 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-------KELGVCLIDIGGGTTDIAVYT--GGSIRY---TKVI 224 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-------hcCCEEEEEeCCCcEEEEEEE--CCEEEE---Eeee
Confidence 4557788889999999999999999999999865432 456799999999999999997 443322 2336
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC------ceeEEEeecccCCcceeeeeecc
Q psy4399 111 HLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS------TQASIEIDSLFEGVDFYTSVTRA 184 (379)
Q Consensus 111 ~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~i~~~ 184 (379)
.+||++||+.+.+.+... +.+||++|+.++.. .+..+.++.. +.+....
T Consensus 225 ~~GG~~it~~i~~~l~~~-------------------~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~---- 279 (371)
T TIGR01174 225 PIGGNHITKDIAKALRTP-------------------LEEAERIKIKYGCASIPLEGPDENIEIPSV--GERPPRS---- 279 (371)
T ss_pred cchHHHHHHHHHHHhCCC-------------------HHHHHHHHHHeeEecccCCCCCCEEEeccC--CCCCCeE----
Confidence 899999999987654322 33899999998753 2344444432 2233334
Q ss_pred cccccHHHHHHHHHHHhhchhhHHH-HHHHHhcCCcCCcCE-EEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccc
Q psy4399 185 RLSVTRARFEELNADLFRGTMEPVE-KSLRDAKMDKAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLC 262 (379)
Q Consensus 185 ~~~ltr~~~~~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~ 262 (379)
+++++|.+++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|++++.+++.|+. +.+...|...
T Consensus 280 ---is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~-~vr~~~P~~~---- 350 (371)
T TIGR01174 280 ---LSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDN-PVRIGLPQNI---- 350 (371)
T ss_pred ---EcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCC-CeEEECCCcc----
Confidence 4499999999999999999997 999988775 56776 99999999999999999999974 3333322110
Q ss_pred cccccchhhhhhhcccCccccCCCChhhHHHhhHHHH
Q psy4399 263 WSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299 (379)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~ 299 (379)
.|.. ....+|.+++|.|+++|
T Consensus 351 ---------------~~~~-~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 351 ---------------GGLT-EDVNDPEYSTAVGLLLY 371 (371)
T ss_pred ---------------CCch-hhcCCcHHHHHHHHHhC
Confidence 0000 11338999999999864
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.88 E-value=8.7e-22 Score=191.72 Aligned_cols=208 Identities=20% Similarity=0.251 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCC
Q psy4399 33 QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 112 (379)
Q Consensus 33 ~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~l 112 (379)
..+.+.+|++.||+++..++.||.|+|.+++.... ++..++|+|+||||||+++++ +|.+... ...++
T Consensus 167 ~~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e-------~~~gv~vvDiGggtTdisv~~--~G~l~~~---~~i~~ 234 (420)
T PRK09472 167 MAKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE-------RELGVCVVDIGGGTMDIAVYT--GGALRHT---KVIPY 234 (420)
T ss_pred HHHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh-------hhcCeEEEEeCCCceEEEEEE--CCEEEEE---eeeec
Confidence 34555779999999999999999999999866533 467899999999999999998 5543322 22689
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC------ceeEEEeecccCCcceeeeeecccc
Q psy4399 113 GGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS------TQASIEIDSLFEGVDFYTSVTRARL 186 (379)
Q Consensus 113 GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~i~~~~~ 186 (379)
||+++++.|+..+.-. ...||++|..+... ....+.++... +. ...
T Consensus 235 GG~~it~dIa~~l~i~-------------------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~-~~-~~~------- 286 (420)
T PRK09472 235 AGNVVTSDIAYAFGTP-------------------PSDAEAIKVRHGCALGSIVGKDESVEVPSVG-GR-PPR------- 286 (420)
T ss_pred hHHHHHHHHHHHhCcC-------------------HHHHHHHHHhcceeccccCCCCceeEecCCC-CC-CCe-------
Confidence 9999999998665322 23899999775421 22344444321 11 112
Q ss_pred cccHHHHHHHHHHHhhchhhHHHH-------HHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCcc
Q psy4399 187 SVTRARFEELNADLFRGTMEPVEK-------SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVT 259 (379)
Q Consensus 187 ~ltr~~~~~~~~~~~~~i~~~i~~-------~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~ 259 (379)
.+++.++.+++.+.++++++.+.+ .+.+++.....++.|+|+||+|++|++++.+++.|+. +.++..|..
T Consensus 287 ~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~-~vri~~P~~-- 363 (420)
T PRK09472 287 SLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT-QVRIGAPLN-- 363 (420)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC-CeEEeCCcc--
Confidence 344999999999977777777665 4456666667789999999999999999999999973 333322211
Q ss_pred ccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 260 TLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
..|..- ...+|.+|+|.|+++|+.
T Consensus 364 -----------------~~g~~~-~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 364 -----------------ITGLTD-YAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred -----------------cCCChh-hcCCcHHHHHHHHHHHhh
Confidence 011111 146899999999999976
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.84 E-value=7.1e-20 Score=174.30 Aligned_cols=218 Identities=26% Similarity=0.366 Sum_probs=170.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCe
Q psy4399 21 AVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGI 100 (379)
Q Consensus 21 ~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~ 100 (379)
.++++|..+ -+.+.+|++.+|+++..++.+|.|++.+.+.+.. ++-+++++|+||||||+++++ +|.
T Consensus 158 hvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE-------kelGv~lIDiG~GTTdIai~~--~G~ 224 (418)
T COG0849 158 HVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDE-------KELGVALIDIGGGTTDIAIYK--NGA 224 (418)
T ss_pred EEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc-------HhcCeEEEEeCCCcEEEEEEE--CCE
Confidence 466676544 5689999999999999999999999999888765 788999999999999999999 564
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC------ceeEEEeecccCC
Q psy4399 101 FEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS------TQASIEIDSLFEG 174 (379)
Q Consensus 101 ~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~------~~~~~~i~~~~~~ 174 (379)
+.... ..++||++++..|+.-|...+. .||+.|...... ....++++...+.
T Consensus 225 l~~~~---~ipvgG~~vT~DIa~~l~t~~~-------------------~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~ 282 (418)
T COG0849 225 LRYTG---VIPVGGDHVTKDIAKGLKTPFE-------------------EAERIKIKYGSALISLADDEETIEVPSVGSD 282 (418)
T ss_pred EEEEe---eEeeCccHHHHHHHHHhCCCHH-------------------HHHHHHHHcCccccCcCCCcceEecccCCCc
Confidence 43333 2789999999999988876665 899999987542 2333444443222
Q ss_pred cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCccccccc
Q psy4399 175 VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 254 (379)
Q Consensus 175 ~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~ 254 (379)
.. ..+++.++.+++++.+.+++..+++.|++.+.+..-...|+|+||++++|++.+..++.|+. +
T Consensus 283 --~~-------~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~-~----- 347 (418)
T COG0849 283 --IP-------RQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGR-P----- 347 (418)
T ss_pred --cc-------chhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCC-c-----
Confidence 12 33559999999999999999999999999998766778899999999999999999999973 2
Q ss_pred CCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHH
Q psy4399 255 NPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 303 (379)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l 303 (379)
|+...|....| -.....+|.++.|.|+.+++...
T Consensus 348 --------------vRig~P~~~~G-l~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 348 --------------VRLGVPLNIVG-LTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred --------------eEeCCCccccC-chhhccCchhhhhHHHHHHHhhc
Confidence 33322322233 23334579999999999999865
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.68 E-value=8.2e-18 Score=140.46 Aligned_cols=175 Identities=26% Similarity=0.412 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 2 iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
+.+++++.+|..+|..+.+..-++|+.-.....+...+.++.||++++.+++||+|||.-..++.. .|
T Consensus 77 iVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg------------~V 144 (277)
T COG4820 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG------------GV 144 (277)
T ss_pred HHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC------------cE
Confidence 578999999999999999999999999988788888899999999999999999999976655433 89
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC
Q psy4399 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 161 (379)
Q Consensus 82 vD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~ 161 (379)
+|+|||||-+|+++ +|. +.. ..|..-||.+++..|+-...-.+. +||+.|+.-..
T Consensus 145 VDiGGGTTGIsi~k--kGk--Viy-~ADEpTGGtHmtLvlAG~ygi~~E-------------------eAE~~Kr~~k~- 199 (277)
T COG4820 145 VDIGGGTTGISIVK--KGK--VIY-SADEPTGGTHMTLVLAGNYGISLE-------------------EAEQYKRGHKK- 199 (277)
T ss_pred EEeCCCcceeEEEE--cCc--EEE-eccCCCCceeEEEEEecccCcCHh-------------------HHHHhhhcccc-
Confidence 99999999999999 442 233 234788998887665543322222 67777754211
Q ss_pred ceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHH
Q psy4399 162 TQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 241 (379)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l 241 (379)
.+|.=..+.|.+++..+.+.+.++..+ +..+.|+||+|.-|.+.+..
T Consensus 200 ----------------------------~~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~F 246 (277)
T COG4820 200 ----------------------------GEEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELF 246 (277)
T ss_pred ----------------------------chhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHH
Confidence 112222456888888888888887654 56799999999999999999
Q ss_pred HHHcC
Q psy4399 242 QDFFN 246 (379)
Q Consensus 242 ~~~f~ 246 (379)
++.|+
T Consensus 247 e~~l~ 251 (277)
T COG4820 247 EKQLA 251 (277)
T ss_pred HHHhc
Confidence 99995
No 34
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.54 E-value=6.1e-14 Score=135.12 Aligned_cols=237 Identities=19% Similarity=0.156 Sum_probs=147.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEE
Q psy4399 18 VSNAVITVPAYFNDSQRQATKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~-a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~ 96 (379)
-..+++++|..++..+|+.+.+ +.+..|++.+.++++|.+|+++++. .+.+|||+|+++|+++.+.
T Consensus 95 ~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~i~pv~- 161 (371)
T cd00012 95 EHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR------------TTGLVVDSGDGVTHVVPVY- 161 (371)
T ss_pred CCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC------------CeEEEEECCCCeeEEEEEE-
Confidence 4579999999999989888877 5777899999999999999998754 4569999999999998887
Q ss_pred eCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCce---eEE-Eeeccc
Q psy4399 97 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ---ASI-EIDSLF 172 (379)
Q Consensus 97 ~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~---~~~-~i~~~~ 172 (379)
+|.... ......++||+++|+.|.+++..+.. ..... .-...++..|+.+..-.. ... ......
T Consensus 162 -~G~~~~-~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~ 229 (371)
T cd00012 162 -DGYVLP-HAIKRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKET 229 (371)
T ss_pred -CCEEch-hhheeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccC
Confidence 553322 22334789999999999998865421 00110 112245666665432100 000 000000
Q ss_pred CCcceeeeeec-ccccccHHHH---HHHHHH-----HhhchhhHHHHHHHHhcCC--cCCcCEEEEEcCCCChHHHHHHH
Q psy4399 173 EGVDFYTSVTR-ARLSVTRARF---EELNAD-----LFRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLL 241 (379)
Q Consensus 173 ~~~~~~~~i~~-~~~~ltr~~~---~~~~~~-----~~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~sr~p~v~~~l 241 (379)
.+....+.++. ..+.+..+.| |.++.| ....+.+.|.+.++....+ ..-++.|+|+||+|++|++.++|
T Consensus 230 ~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl 309 (371)
T cd00012 230 SLLEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERL 309 (371)
T ss_pred CccceeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHH
Confidence 01111111111 1122323222 222333 2347778888888765432 33468899999999999999999
Q ss_pred HHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHH
Q psy4399 242 QDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 302 (379)
Q Consensus 242 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~ 302 (379)
++.+....... ..+. ..+....+|..++-.||+++|..
T Consensus 310 ~~el~~~~~~~--------~~~~---------------~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 310 QKELLKLAPPS--------KDTK---------------VKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHHhCCcc--------cceE---------------EEEccCCCccccEEeCchhhcCc
Confidence 99886411000 0000 12345668999999999998864
No 35
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.54 E-value=2.6e-13 Score=128.66 Aligned_cols=216 Identities=14% Similarity=0.189 Sum_probs=140.9
Q ss_pred CCCcEE--EEcCCCCCHHH-HHHHHHHHHHc------------CCceeeeccchHHHHHHhccccccCC-CCCCCCceEE
Q psy4399 17 TVSNAV--ITVPAYFNDSQ-RQATKDSGTIA------------GLNVLRIINEPTAAAIAYGLDKKVGS-AAGSGERNVL 80 (379)
Q Consensus 17 ~~~~~v--itvPa~~~~~~-r~~l~~a~~~A------------Gl~~~~lv~Ep~Aaa~~~~~~~~~~~-~~~~~~~~vl 80 (379)
.+.+++ ...|..+-..+ ++.+++..... -+..+.+++||.+|.+.+..+..... ....+...++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 59998775444 46777665321 12457889999999887766432100 0011346789
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|+|+|+||||+++++ ++.+. ....+....|..++.+.+.+.+..+.. +..+ +.. ++.+..+.-+
T Consensus 189 vIDIG~~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~--~~~---~ie~~l~~g~----- 252 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKEE---GASI--TPY---MLEKGLEYGA----- 252 (344)
T ss_pred EEEcCCCcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhCC---CCCC--CHH---HHHHHHHcCc-----
Confidence 999999999999997 44443 233444789999999998888753321 1221 111 1221211111
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
+.+. .+.+. . + ++++.++++++++++.+.+...+.+ ..+++.|+|+||++++ +++.
T Consensus 253 -----i~~~---~~~~i--d-------~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~ 308 (344)
T PRK13917 253 -----CKLN---QKTVI--D-------F-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDS 308 (344)
T ss_pred -----EEeC---CCceE--e-------h-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHH
Confidence 1111 01010 1 1 5778888899999998888888754 2468999999999987 8899
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCC
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 306 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~ 306 (379)
|++.|+. +....||.+|.|+|...+|..+.+.
T Consensus 309 lk~~f~~----------------------------------~~~~~~p~~ANa~G~~~~g~~~~~~ 340 (344)
T PRK13917 309 LSHWYSD----------------------------------VEKADESQFANVRGYYKYGELLKNK 340 (344)
T ss_pred HHHHcCC----------------------------------eEEcCChHHHHHHHHHHHHHHHhcc
Confidence 9999974 3456799999999999999988764
No 36
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.47 E-value=2.7e-13 Score=130.80 Aligned_cols=224 Identities=20% Similarity=0.212 Sum_probs=139.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHH-HHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEe
Q psy4399 19 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE 97 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~a~-~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~ 97 (379)
..++++.|...+..+|+.+.+.+ +..|++.+.++++|.+|+++++ ..+.+|||+|+++|+++.+.
T Consensus 96 ~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g------------~~~~lVVDiG~~~t~v~pv~-- 161 (373)
T smart00268 96 HPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG------------RTTGLVIDSGDGVTHVVPVV-- 161 (373)
T ss_pred CeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC------------CCEEEEEecCCCcceEEEEE--
Confidence 57999999999999999998875 5779999999999999999874 24569999999999999987
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC----------------
Q psy4399 98 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS---------------- 161 (379)
Q Consensus 98 ~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~---------------- 161 (379)
+|..-. ......++||+++|+.|.+++...-. ..... .-...++.+|+.+...
T Consensus 162 ~G~~~~-~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~ 230 (373)
T smart00268 162 DGYVLP-HAIKRIDIAGRDLTDYLKELLSERGY---QFNSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSE 230 (373)
T ss_pred CCEEch-hhheeccCcHHHHHHHHHHHHHhcCC---CCCcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhccc
Confidence 553322 22233689999999999988765100 00000 1112344555543210
Q ss_pred ---ceeEEEeecccCCcceeeeeecccccccHHHH-HHHHHHH-----hhchhhHHHHHHHHhcCC--cCCcCEEEEEcC
Q psy4399 162 ---TQASIEIDSLFEGVDFYTSVTRARLSVTRARF-EELNADL-----FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGG 230 (379)
Q Consensus 162 ---~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~-~~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG 230 (379)
....+.++ +|..+..... |... |.++.|. ...+.+.|.++++.+... ..-.++|+|+||
T Consensus 231 ~~~~~~~~~lp---dg~~~~~~~e-------r~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG 300 (373)
T smart00268 231 SSKLEKTYELP---DGNTIKVGNE-------RFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGG 300 (373)
T ss_pred ccccceeEECC---CCCEEEEChH-------HeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecc
Confidence 00111111 2222211111 1111 1222231 246777788887765432 223577999999
Q ss_pred CCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHH
Q psy4399 231 STRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 302 (379)
Q Consensus 231 ~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~ 302 (379)
+|++|++.++|++.+...- |. .+. ..+....++..++=.||+++|..
T Consensus 301 ~s~i~Gl~~RL~~el~~~~-----p~-----~~~---------------v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 301 STLIPGFGERLEKELKQLA-----PK-----KLK---------------VKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred cccCcCHHHHHHHHHHHhC-----CC-----Cce---------------eEEecCCCCccceEeCcccccCc
Confidence 9999999999999885410 00 000 12334456778888898877763
No 37
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.42 E-value=5.4e-12 Score=120.56 Aligned_cols=203 Identities=14% Similarity=0.143 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHHcCCceeeeccchHHHHHHhcc-ccccCCCCCCCCc-eEEEEEcCCceeEEEEEEEeCCeEEEEEec
Q psy4399 30 NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL-DKKVGSAAGSGER-NVLIFDLGGGTFDVSILTIEDGIFEVKSTA 107 (379)
Q Consensus 30 ~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~-~~~~~~~~~~~~~-~vlVvD~GggT~disv~~~~~~~~~~~~~~ 107 (379)
.....+.+.++++.||++...+..+|.|.+-.+.. ...... .. ... .++++|+|+++|++++++ ++.+.. .
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~-~~-~~~~~~~lvdiG~~~t~l~i~~--~g~~~~---~ 213 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLAS-RT-YRLTDAALVDIGATSSTLNLLH--PGRMLF---T 213 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCcc-cc-ccCceEEEEEECCCcEEEEEEE--CCeEEE---E
Confidence 35567888999999999999999999998776631 101110 00 233 499999999999999998 443322 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCceeEEEeecccCCcceeeeeeccccc
Q psy4399 108 GDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLS 187 (379)
Q Consensus 108 ~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ 187 (379)
+...+||.++++.+.+.+.-.+ .+||+.|..-....
T Consensus 214 r~i~~G~~~i~~~i~~~~~~~~-------------------~~Ae~~k~~~~~~~------------------------- 249 (348)
T TIGR01175 214 REVPFGTRQLTSELSRAYGLNP-------------------EEAGEAKQQGGLPL------------------------- 249 (348)
T ss_pred EEeechHHHHHHHHHHHcCCCH-------------------HHHHHHHhcCCCCC-------------------------
Confidence 2368999999998875442222 26777776422110
Q ss_pred ccHHHHHHHHHHHhhchhhHHHHHHHHh--cCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCcccccccc
Q psy4399 188 VTRARFEELNADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSV 265 (379)
Q Consensus 188 ltr~~~~~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~ 265 (379)
+.-.+++++.++++...|.+.++-. ......++.|+|+||+++++.+.+.+++.|+- +.... .
T Consensus 250 ---~~~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~-~v~~~------~----- 314 (348)
T TIGR01175 250 ---LYDPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGL-PTEVA------N----- 314 (348)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCC-CeEec------C-----
Confidence 0012345666677777777777532 22334589999999999999999999999973 11111 1
Q ss_pred ccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 266 AQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
|.+.+-.............+|..++|.|+|+++
T Consensus 315 --P~~~~~~~~~~~~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 315 --PFALMALDAKVDAGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred --hHHhcccCccCCHHHHHhhhHHHHHHhhHhhcC
Confidence 111110000000111234578999999999874
No 38
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.40 E-value=7.7e-12 Score=118.95 Aligned_cols=164 Identities=18% Similarity=0.238 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCC
Q psy4399 31 DSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT 110 (379)
Q Consensus 31 ~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~ 110 (379)
...-+...++++.||++...+--+|.|.+-.+.......+ .......++++|+|+.+|.++++. ++.... .+..
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~-~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f---~R~i 208 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLP-DEEDAETVALVDIGASSTTVIIFQ--NGKPIF---SRSI 208 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST-----T-EEEEEEE-SS-EEEEEEE--TTEEEE---EEEE
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCC-cccccceEEEEEecCCeEEEEEEE--CCEEEE---EEEE
Confidence 4556777889999999998888888886655544211111 111346899999999999999998 554322 2236
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccH
Q psy4399 111 HLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTR 190 (379)
Q Consensus 111 ~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr 190 (379)
.+||.++++.+.+.+.-.+. ++|..|..-+.. .
T Consensus 209 ~~G~~~l~~~i~~~~~i~~~-------------------~Ae~~k~~~~l~----------------------------~ 241 (340)
T PF11104_consen 209 PIGGNDLTEAIARELGIDFE-------------------EAEELKRSGGLP----------------------------E 241 (340)
T ss_dssp S-SHHHHHHHHHHHTT--HH-------------------HHHHHHHHT--------------------------------
T ss_pred eeCHHHHHHHHHHhcCCCHH-------------------HHHHHHhcCCCC----------------------------c
Confidence 89999999999987654444 677766652110 1
Q ss_pred HHHHHHHHHHhhchhhHHHHHHH--HhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 191 ARFEELNADLFRGTMEPVEKSLR--DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 191 ~~~~~~~~~~~~~i~~~i~~~l~--~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
+...+.+.+.++++...|.+.++ ........|+.|+|+||+++++++.+.+++.++-
T Consensus 242 ~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~ 300 (340)
T PF11104_consen 242 EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGI 300 (340)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCC
Confidence 22344566677777777777776 2333455799999999999999999999999973
No 39
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.39 E-value=7.9e-12 Score=117.80 Aligned_cols=209 Identities=17% Similarity=0.205 Sum_probs=130.7
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHc---------CCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCc
Q psy4399 17 TVSNAVITVPAYFNDSQRQATKDSGTIA---------GLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGG 87 (379)
Q Consensus 17 ~~~~~vitvPa~~~~~~r~~l~~a~~~A---------Gl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~Ggg 87 (379)
.+..+|+..|..+...+++.+++..... -+..+.+++||.+|.+.+..+.... ......++|+|+|++
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~---~~~~~~~lVIDIG~~ 177 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKL---LTGKEQSLIIDPGYF 177 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCc---ccCcCcEEEEecCCC
Confidence 4567999999999888999999986532 3356899999999988876543211 114567899999999
Q ss_pred eeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCceeEEE
Q psy4399 88 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIE 167 (379)
Q Consensus 88 T~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~ 167 (379)
|||+.+++ ++.+ +....+....|-.++-+.+.+.+.+++. .....+.. ++....+.-|.. .
T Consensus 178 TtD~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~---~i~~~l~~g~~~-------~-- 238 (320)
T TIGR03739 178 TFDWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDID---RIDLALRTGKQP-------R-- 238 (320)
T ss_pred eeeeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHH---HHHHHHHhCCce-------e--
Confidence 99998775 4444 4444555788988888888877766553 22001111 111111111100 0
Q ss_pred eecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 168 IDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 168 i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
+ .+... .+ .+.++ ..+..+++++..+.+.+. ...+++.|+|+||++. .+++.|++.|+.
T Consensus 239 ~----~gk~~--di--------~~~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~ 297 (320)
T TIGR03739 239 I----YQKPV--DI--------KRCLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPK 297 (320)
T ss_pred e----cceec--Cc--------hHHHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCC
Confidence 0 01100 11 12222 233334444444444332 1245889999999997 578999999975
Q ss_pred cccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 248 KELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
..+....||..|.|+|-..++
T Consensus 298 --------------------------------~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 298 --------------------------------HRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred --------------------------------CeeEecCCcHHHHHHHHHHhh
Confidence 344566899999999988665
No 40
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.27 E-value=3e-11 Score=117.42 Aligned_cols=232 Identities=21% Similarity=0.259 Sum_probs=133.9
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHH-HHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEE
Q psy4399 18 VSNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~a-~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~ 96 (379)
-..++++.|..++...|+.+.+. .+..|++.+.++.+|.+|+++++... -+|||+|.+.|.++.+-
T Consensus 94 ~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~t------------glVVD~G~~~t~v~pV~- 160 (393)
T PF00022_consen 94 DHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTT------------GLVVDIGYSSTSVVPVV- 160 (393)
T ss_dssp GSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSS------------EEEEEESSS-EEEEEEE-
T ss_pred cceeeeeccccCCchhhhhhhhhhhcccccceeeeeeccccccccccccc------------ccccccceeeeeeeeee-
Confidence 34699999999999999988884 55669999999999999998886553 39999999999998876
Q ss_pred eCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH---hccCcc----ccHHHHHHHHHHHHHHhhhc-----------
Q psy4399 97 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK---YKKDLT----TNKRALRRLRTACERAKRTL----------- 158 (379)
Q Consensus 97 ~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~---~~~~~~----~~~~~~~~L~~~~e~~K~~l----------- 158 (379)
+|..- ........+||+++++.|.+.+..+-... +..... ........-...++.+|+.+
T Consensus 161 -dG~~~-~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~ 238 (393)
T PF00022_consen 161 -DGYVL-PHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQ 238 (393)
T ss_dssp -TTEE--GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHH
T ss_pred -ecccc-ccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccccccc
Confidence 56332 12222368999999999988887631100 000000 00000011112233333332
Q ss_pred ----CCCceeEEEeecccCCcceeeeeecccccccHHHH--HH-HHHHHhh------------chhhHHHHHHHHhcCC-
Q psy4399 159 ----SSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARF--EE-LNADLFR------------GTMEPVEKSLRDAKMD- 218 (379)
Q Consensus 159 ----s~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~--~~-~~~~~~~------------~i~~~i~~~l~~~~~~- 218 (379)
.......+.++ +|.. +.+..+.+ -| +|.|... .+.+.|.+++.....+
T Consensus 239 ~~~~~~~~~~~~~lP---dg~~---------i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~ 306 (393)
T PF00022_consen 239 EEQASENPEKSYELP---DGQT---------IILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDL 306 (393)
T ss_dssp HHHHCSTTTEEEE-T---TSSE---------EEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTT
T ss_pred ccccccccceecccc---cccc---------cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc
Confidence 11222333322 2221 11222222 22 2222221 4667777777765433
Q ss_pred -cCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCC-ChhhHHHhhH
Q psy4399 219 -KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSI-NPDEAVAYGA 296 (379)
Q Consensus 219 -~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~aVA~Ga 296 (379)
..-...|+|+||+|++|++.++|++.+... .++ .+. .++.... +|..++=.||
T Consensus 307 r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~-----~~~-----~~~---------------~~v~~~~~~~~~~aW~Gg 361 (393)
T PF00022_consen 307 RKELLSNIVLTGGSSLIPGFKERLQQELRSL-----LPS-----STK---------------VKVIAPPSDRQFAAWIGG 361 (393)
T ss_dssp HHHHHTTEEEESGGGGSTTHHHHHHHHHHHH-----SGT-----TST---------------EEEE--T-TTTSHHHHHH
T ss_pred ccccccceEEecccccccchHHHHHHHhhhh-----hhc-----ccc---------------ceeccCchhhhhcccccc
Confidence 222578999999999999999999888531 000 000 2344444 8999999999
Q ss_pred HHHHH
Q psy4399 297 AVQAA 301 (379)
Q Consensus 297 a~~a~ 301 (379)
+++|.
T Consensus 362 silas 366 (393)
T PF00022_consen 362 SILAS 366 (393)
T ss_dssp HHHHT
T ss_pred eeeec
Confidence 98887
No 41
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.24 E-value=2.9e-10 Score=111.06 Aligned_cols=207 Identities=19% Similarity=0.162 Sum_probs=127.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHH-HHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEe
Q psy4399 19 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE 97 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~a~-~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~ 97 (379)
..+++|.|..++..+|+.|.+.+ +..+++.+.+..+|.++++++........ .....+-+|||+|.|+|+++.+-
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~--~~g~~tglVVDiG~~~T~i~PV~-- 178 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKE--LGGTLTGTVIDSGDGVTHVIPVV-- 178 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccc--cCCceeEEEEECCCCceEEEEEE--
Confidence 36899999999999999998854 55599999999999999988643321100 00123459999999999998876
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCc---------------
Q psy4399 98 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST--------------- 162 (379)
Q Consensus 98 ~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~--------------- 162 (379)
+|..-..+.. ..++||+++++.|.+++.++.. .+... ..+..++.+|+.+....
T Consensus 179 ~G~~l~~~~~-~~~~GG~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~ 247 (414)
T PTZ00280 179 DGYVIGSSIK-HIPLAGRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPK 247 (414)
T ss_pred CCEEcccceE-EecCcHHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcc
Confidence 4533222222 3689999999999998854311 11110 01123555565543210
Q ss_pred --eeEEEeecccCCcceeeeeecccccccHHHHH---HHHHHHh------hchhhHHHHHHHHhcCC--cCCcCEEEEEc
Q psy4399 163 --QASIEIDSLFEGVDFYTSVTRARLSVTRARFE---ELNADLF------RGTMEPVEKSLRDAKMD--KAQIHDIVLVG 229 (379)
Q Consensus 163 --~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~---~~~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~VvLvG 229 (379)
...+.++....+.+....+. .+.|. -+|.|.+ ..+.+.|.+.+.++... ..-.++|+|+|
T Consensus 248 ~~~~~~~~~d~~~g~~~~i~l~-------~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~G 320 (414)
T PTZ00280 248 NHFKKYTAVNSVTKKPYTVDVG-------YERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSG 320 (414)
T ss_pred cccceEECCCCCCCCccEEEec-------hHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeC
Confidence 01122211111222222333 33322 2333322 24567777777765433 33467899999
Q ss_pred CCCChHHHHHHHHHHcCC
Q psy4399 230 GSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 230 G~sr~p~v~~~l~~~f~~ 247 (379)
|+|.+|++.++|++.+..
T Consensus 321 G~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 321 GSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred CcccCcCHHHHHHHHHHH
Confidence 999999999999998864
No 42
>PTZ00281 actin; Provisional
Probab=99.12 E-value=4.7e-10 Score=108.11 Aligned_cols=225 Identities=17% Similarity=0.210 Sum_probs=138.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEE
Q psy4399 18 VSNAVITVPAYFNDSQRQATKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~-a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~ 96 (379)
-..+++|-|..+...+|+.|.+ ..+..+++.+.+..+|.+++++++. .+-+|||+|.+.|.++-+-
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------------~tglVVDiG~~~t~v~PV~- 167 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------------TTGIVMDSGDGVSHTVPIY- 167 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------------ceEEEEECCCceEEEEEEE-
Confidence 3578999999999999999988 6677799999999999999987643 2459999999999987665
Q ss_pred eCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCc--------------
Q psy4399 97 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST-------------- 162 (379)
Q Consensus 97 ~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~-------------- 162 (379)
+|..-..+ ....++||.++++.|.+.+..+- ..... .. -...++.+|+.+....
T Consensus 168 -dG~~~~~~-~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~-~~----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~ 235 (376)
T PTZ00281 168 -EGYALPHA-ILRLDLAGRDLTDYMMKILTERG-----YSFTT-TA----EREIVRDIKEKLAYVALDFEAEMQTAASSS 235 (376)
T ss_pred -ecccchhh-eeeccCcHHHHHHHHHHHHHhcC-----CCCCc-HH----HHHHHHHHHHhcEEecCCchHHHHhhhcCc
Confidence 34222222 23368999999999988775421 11100 00 0123555565542110
Q ss_pred --eeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHh-----hchhhHHHHHHHHhcCC--cCCcCEEEEEcCCCC
Q psy4399 163 --QASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLF-----RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTR 233 (379)
Q Consensus 163 --~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~sr 233 (379)
...+.++ +|..+ .+...++... |.+|.|.+ ..+.+.|.+.+..+... ..-.++|+|+||+|.
T Consensus 236 ~~~~~y~LP---dg~~i--~i~~er~~~~----E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~ 306 (376)
T PTZ00281 236 ALEKSYELP---DGQVI--TIGNERFRCP----EALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTM 306 (376)
T ss_pred ccceeEECC---CCCEE--EeeHHHeeCc----ccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCcccc
Confidence 1112211 12221 1221111111 22333322 24566677777655432 233578999999999
Q ss_pred hHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 234 IPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 234 ~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
+|++.++|+..+.... |.. +. .++..+.++..++=+|+++.|.
T Consensus 307 ~~Gf~~RL~~El~~~~-----p~~-----~~---------------v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 307 FPGIADRMNKELTALA-----PST-----MK---------------IKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred CcCHHHHHHHHHHHhC-----CCC-----cc---------------eEEecCCCCceeEEECcccccC
Confidence 9999999998885310 000 00 2344455778889999998876
No 43
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.10 E-value=4.9e-10 Score=105.39 Aligned_cols=176 Identities=18% Similarity=0.292 Sum_probs=99.7
Q ss_pred ceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHH
Q psy4399 47 NVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 126 (379)
Q Consensus 47 ~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~ 126 (379)
..+.+++||.||.+.+..... +...++|+|+||+|+|+++++ ++.-......+...+|-..+.+.+.+.+.
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-------~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~ 211 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-------EDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALR 211 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS--------TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT
T ss_pred eeEEEEcccHHHHHHHHHhhc-------ccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHH
Confidence 468899999999998876622 356799999999999999987 33222333344467898888888877765
Q ss_pred HHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhh
Q psy4399 127 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTME 206 (379)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~ 206 (379)
.. . .. .+.....++..... -+..++ ......+ . .+++.+.++..++++.+
T Consensus 212 ~~-~----~~--~s~~~~~~ii~~~~-~~~~~~----------~~i~~~~-----~-------~~~v~~~i~~~~~~l~~ 261 (318)
T PF06406_consen 212 SA-G----ID--TSELQIDDIIRNRK-DKGYLR----------QVINDED-----V-------IDDVSEVIEEAVEELIN 261 (318)
T ss_dssp ---S----BH--HHHHHHHHHHHTTT--HHHHH----------HHSSSHH-----H-------HHHHHHHHHHHHHHHHH
T ss_pred Hh-c----CC--CcHHHHHHHHHhhh-ccceec----------ccccchh-----h-------HHHHHHHHHHHHHHHHH
Confidence 41 1 00 00111111110000 000000 0000000 0 44555555555555555
Q ss_pred HHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCC
Q psy4399 207 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSI 286 (379)
Q Consensus 207 ~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (379)
.+.+.+.+ ..+++.|+|+||++. .+.+.|++.++-. ...+....
T Consensus 262 ~i~~~~~~----~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~------------------------------~~~i~i~~ 305 (318)
T PF06406_consen 262 RILRELGD----FSDIDRIFFVGGGAI--LLKDAIKEAFPVP------------------------------NERIVIVD 305 (318)
T ss_dssp HHHHHHTT----S-S-SEEEEESTTHH--HHHHHHHHHHT--------------------------------GGGEE--S
T ss_pred HHHHHHhh----hccCCeEEEECCcHH--HHHHHHHHhhCCC------------------------------CCcEEECC
Confidence 55555432 346789999999995 5899999998620 03567788
Q ss_pred ChhhHHHhhHH
Q psy4399 287 NPDEAVAYGAA 297 (379)
Q Consensus 287 ~p~~aVA~Gaa 297 (379)
||++|.|.|-+
T Consensus 306 ~pqfAnv~G~~ 316 (318)
T PF06406_consen 306 DPQFANVRGFY 316 (318)
T ss_dssp SGGGHHHHHHH
T ss_pred CchhhHHHHHh
Confidence 99999999965
No 44
>PTZ00004 actin-2; Provisional
Probab=99.10 E-value=6.7e-10 Score=107.14 Aligned_cols=222 Identities=17% Similarity=0.191 Sum_probs=138.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEE
Q psy4399 18 VSNAVITVPAYFNDSQRQATKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~-a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~ 96 (379)
-..+++|-|..+...+|+.+.+ ..+..|++.+.+..+|.+++++++. .+-+|||+|.+.|+++.+.
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------------~tglVVDiG~~~t~v~pV~- 167 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPIY- 167 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------------ceEEEEECCCCcEEEEEEE-
Confidence 4468899999999999988877 5566799999999999999987643 2449999999999998776
Q ss_pred eCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC---------------
Q psy4399 97 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS--------------- 161 (379)
Q Consensus 97 ~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~--------------- 161 (379)
+|..-..+.. ..++||.++++.|.+.+..+. ..+... . -...++..|+.+...
T Consensus 168 -dG~~l~~~~~-~~~~GG~~lt~~L~~lL~~~~-----~~~~~~--~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~ 235 (378)
T PTZ00004 168 -EGYSLPHAIH-RLDVAGRDLTEYMMKILHERG-----TTFTTT--A---EKEIVRDIKEKLCYIALDFDEEMGNSAGSS 235 (378)
T ss_pred -CCEEeeccee-eecccHHHHHHHHHHHHHhcC-----CCCCcH--H---HHHHHHHHhhcceeecCCHHHHHhhhhcCc
Confidence 5543333333 368999999999998874431 111110 0 011244455443210
Q ss_pred c--eeEEEeecccCCcceeeeeecccccccHHHH---HHHHHHH------hhchhhHHHHHHHHhcCC--cCCcCEEEEE
Q psy4399 162 T--QASIEIDSLFEGVDFYTSVTRARLSVTRARF---EELNADL------FRGTMEPVEKSLRDAKMD--KAQIHDIVLV 228 (379)
Q Consensus 162 ~--~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~---~~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~VvLv 228 (379)
. ...+.++ +|..+ .+..+.| |-+|.|. ...+.+.|.+++.++..+ ..-..+|+|+
T Consensus 236 ~~~~~~y~lP---dg~~i---------~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~ 303 (378)
T PTZ00004 236 DKYEESYELP---DGTII---------TVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLS 303 (378)
T ss_pred cccceEEECC---CCCEE---------EEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEec
Confidence 0 1122221 22222 2222222 2244443 234567777777765432 3346789999
Q ss_pred cCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 229 GGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 229 GG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
||+|.+|++.++|+..+...- |.. +. ..+....++..++=.|+++.|.
T Consensus 304 GG~s~~~Gf~~RL~~EL~~~~-----p~~-----~~---------------~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 304 GGTTMYRGLPERLTKELTTLA-----PST-----MK---------------IKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred cchhcCcCHHHHHHHHHHHhC-----CCC-----cc---------------EEEecCCCCceeEEECcccccC
Confidence 999999999999998885310 000 00 2334455778888889988765
No 45
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=99.05 E-value=1.5e-09 Score=95.95 Aligned_cols=202 Identities=17% Similarity=0.191 Sum_probs=109.5
Q ss_pred HHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHH
Q psy4399 40 SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN 119 (379)
Q Consensus 40 a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~ 119 (379)
.-+..|.++..-=.|+.+|.+..++... .+....|+|+|||+||.|++.-.+. .....-+| .|+-++.
T Consensus 104 l~~~lgv~V~igGvEAemAi~GALTTPG-------t~~PlaIlDmG~GSTDAsii~~~g~-v~~iHlAG----AG~mVTm 171 (332)
T PF08841_consen 104 LEEELGVPVEIGGVEAEMAILGALTTPG-------TDKPLAILDMGGGSTDASIINRDGE-VTAIHLAG----AGNMVTM 171 (332)
T ss_dssp HHHHHTSEEEEECEHHHHHHHHHTTSTT---------SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHH
T ss_pred HHHHHCCceEEccccHHHHHhcccCCCC-------CCCCeEEEecCCCcccHHHhCCCCc-EEEEEecC----CchhhHH
Confidence 3445588888888999999999988876 5678999999999999999986433 33333222 3666665
Q ss_pred HHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhh-------cC----CCceeEEEeecccCC----------ccee
Q psy4399 120 RMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRT-------LS----SSTQASIEIDSLFEG----------VDFY 178 (379)
Q Consensus 120 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~-------ls----~~~~~~~~i~~~~~~----------~~~~ 178 (379)
.|...|- . ++ +.-+|..|+. |. .+...++ ++...+. .+..
T Consensus 172 lI~sELG--------l----~d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~F-fd~pl~p~~faRvvi~~~~~l 232 (332)
T PF08841_consen 172 LINSELG--------L----ED------RELAEDIKKYPLAKVESLFHIRHEDGTVQF-FDEPLDPDVFARVVILKEDGL 232 (332)
T ss_dssp HHHHHCT-------------S-------HHHHHHHHHS-EEEEECTTEEEETTS-EEE--SS---CCCTTSEEEECTTEE
T ss_pred HHHHhhC--------C----CC------HHHHHHhhhcchhhhccceEEEecCCceEE-ecCCCChHHeeEEEEecCCce
Confidence 5543321 1 00 1156666653 10 0111111 1111110 0111
Q ss_pred eeeecccccccHHHHHHHHHHHhhc-hhhHHHHHHHHhcC--CcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccC
Q psy4399 179 TSVTRARLSVTRARFEELNADLFRG-TMEPVEKSLRDAKM--DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 255 (379)
Q Consensus 179 ~~i~~~~~~ltr~~~~~~~~~~~~~-i~~~i~~~l~~~~~--~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~ 255 (379)
..++ ..++-+++..+=...-++ +..-..++|++... +..+|+.|+|+||++.-.-|.+++.+.+..
T Consensus 233 vPi~---~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~-------- 301 (332)
T PF08841_consen 233 VPIP---GDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSH-------- 301 (332)
T ss_dssp EEES---STS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCT--------
T ss_pred eecC---CCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhh--------
Confidence 1111 112233333322221111 12223344443322 244799999999999999999999999975
Q ss_pred CCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 256 PDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
++..+++ .++.-...|..|||.|+++.-
T Consensus 302 --y~iVaGR---------------gNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 302 --YGIVAGR---------------GNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp --TT-EEEE-----------------GGGTSTTSTHHHHHHHHHH
T ss_pred --Ccceeec---------------cccccccCchHHHHHHHHHhh
Confidence 3344444 567778899999999999743
No 46
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.03 E-value=7.6e-09 Score=93.83 Aligned_cols=200 Identities=19% Similarity=0.258 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHcCCceeeeccchHHHHHHhccc-cccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCC
Q psy4399 33 QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLD-KKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 111 (379)
Q Consensus 33 ~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~-~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~ 111 (379)
......+|++.||++...+--|..|.--+|... .+... ......|+|+|+|+..+.+.++. +++. +. ..+..
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~--~~a~~~vav~~Igat~s~l~vi~--~gk~--ly-~r~~~ 222 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGP--EEAAMKVAVFDIGATSSELLVIQ--DGKI--LY-TREVP 222 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCC--chhhhhheeeeecccceEEEEEE--CCee--ee-Eeecc
Confidence 345567899999999999999999988777521 11111 01123478999999999999998 4422 22 34478
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccHH
Q psy4399 112 LGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRA 191 (379)
Q Consensus 112 lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~ 191 (379)
+||+++++.+.+.+.-.+. .++.+|.....-. +
T Consensus 223 ~g~~Qlt~~i~r~~~L~~~-------------------~a~~~k~~~~~P~----------------------------~ 255 (354)
T COG4972 223 VGTDQLTQEIQRAYSLTEE-------------------KAEEIKRGGTLPT----------------------------D 255 (354)
T ss_pred CcHHHHHHHHHHHhCCChh-------------------HhHHHHhCCCCCC----------------------------c
Confidence 9999999998876643333 5666665532211 1
Q ss_pred HHHHHHHHHhhchhhHHHHHHHH--hcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccch
Q psy4399 192 RFEELNADLFRGTMEPVEKSLRD--AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPV 269 (379)
Q Consensus 192 ~~~~~~~~~~~~i~~~i~~~l~~--~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 269 (379)
.-.+...++++.+.+.|.+.|+- +.-...+|+.++|.||++.+-.+.+.+.+.++- |..+.. |.
T Consensus 256 y~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~-------~t~van-------Pf 321 (354)
T COG4972 256 YGSEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSI-------PTEVAN-------PF 321 (354)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCC-------CeEeeC-------HH
Confidence 22334556666666666666652 222345799999999999999999999999863 222222 22
Q ss_pred hhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 270 QKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
..|.-+....+......-|...+|.|+|+++
T Consensus 322 ~~~~~~~~v~k~~l~~dap~l~ia~GLAlRg 352 (354)
T COG4972 322 AYMALNVKVNKGYLQTDAPALTIALGLALRG 352 (354)
T ss_pred HHHhhhhccccccccccchHHHHHhhhhhhc
Confidence 2222222222324456679999999999875
No 47
>PTZ00466 actin-like protein; Provisional
Probab=99.02 E-value=5.5e-09 Score=100.65 Aligned_cols=222 Identities=15% Similarity=0.162 Sum_probs=138.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEE
Q psy4399 18 VSNAVITVPAYFNDSQRQATKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~-a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~ 96 (379)
-..+++|-|..+...+|+.|.+ ..+..+++.+.+..+|.+++++++. .+-+|||+|.+.|.+..+-
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------------~tglVVD~G~~~t~v~PV~- 172 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK------------TNGTVLDCGDGVCHCVSIY- 172 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------------ceEEEEeCCCCceEEEEEE-
Confidence 4468999999999999999877 5666799999999999999987643 2459999999999997766
Q ss_pred eCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC---C----------c-
Q psy4399 97 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS---S----------T- 162 (379)
Q Consensus 97 ~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~---~----------~- 162 (379)
+|..-..+ ....++||.++++.|.+.+.++ +.... .. .-+..++.+|+.+.. + .
T Consensus 173 -~G~~~~~~-~~~~~~GG~~lt~~L~~lL~~~-----~~~~~-~~----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~ 240 (380)
T PTZ00466 173 -EGYSITNT-ITRTDVAGRDITTYLGYLLRKN-----GHLFN-TS----AEMEVVKNMKENCCYVSFNMNKEKNSSEKAL 240 (380)
T ss_pred -CCEEeecc-eeEecCchhHHHHHHHHHHHhc-----CCCCC-cH----HHHHHHHHHHHhCeEecCChHHHHhhccccc
Confidence 55333223 2236899999999998877432 11110 00 111234455554321 0 0
Q ss_pred -eeEEEeecccCCcceeeeeecccccccHHHH---HHHHHHHh-----hchhhHHHHHHHHhcCC--cCCcCEEEEEcCC
Q psy4399 163 -QASIEIDSLFEGVDFYTSVTRARLSVTRARF---EELNADLF-----RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGS 231 (379)
Q Consensus 163 -~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~ 231 (379)
...+.++ +|.. +.+..+.| |-+|.|.+ ..+.+.|.+.+.++... ..-..+|+|+||+
T Consensus 241 ~~~~y~LP---dg~~---------i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~ 308 (380)
T PTZ00466 241 TTLPYILP---DGSQ---------ILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGT 308 (380)
T ss_pred cceeEECC---CCcE---------EEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCc
Confidence 0111111 2221 22323333 22333322 24556677777665432 3346889999999
Q ss_pred CChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 232 TRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 232 sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
|.+|++.++|++.+...- |.. +. ..+....++..++=+|++++|.
T Consensus 309 Sl~~Gf~~RL~~EL~~l~-----p~~-----~~---------------v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 309 TMFHGFGDRLLNEIRKFA-----PKD-----IT---------------IRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred cccCCHHHHHHHHHHHhC-----CCC-----ce---------------EEEecCCCCceeEEECchhhcC
Confidence 999999999999885310 000 00 2334455677788889988875
No 48
>PTZ00452 actin; Provisional
Probab=99.01 E-value=5.1e-09 Score=100.74 Aligned_cols=222 Identities=16% Similarity=0.182 Sum_probs=137.8
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHH-HHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEE
Q psy4399 18 VSNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~a-~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~ 96 (379)
-..+++|-|..++..+|+.|.+. .+..+++.+.+.+.|.+++++++.. +-+|||+|.+.|+++.+-
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~------------tglVVDiG~~~t~v~PV~- 166 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKT------------IGLVVDSGEGVTHCVPVF- 166 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCc------------eeeeecCCCCcceEEEEE-
Confidence 35789999999999999999884 5667899999999999999876432 349999999999998776
Q ss_pred eCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC---------------
Q psy4399 97 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS--------------- 161 (379)
Q Consensus 97 ~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~--------------- 161 (379)
+|..-..+... .++||.++++.|.+.|..+ +...... .. +..++.+|+.+...
T Consensus 167 -dG~~l~~~~~r-~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~ 234 (375)
T PTZ00452 167 -EGHQIPQAITK-INLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESN 234 (375)
T ss_pred -CCEEeccceEE-eeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccC
Confidence 56433333333 6899999999988877432 1111110 00 11234444443211
Q ss_pred -ceeEEEeecccCCcceeeeeecccccccHHHH---HHHHHHHh-----hchhhHHHHHHHHhcC--CcCCcCEEEEEcC
Q psy4399 162 -TQASIEIDSLFEGVDFYTSVTRARLSVTRARF---EELNADLF-----RGTMEPVEKSLRDAKM--DKAQIHDIVLVGG 230 (379)
Q Consensus 162 -~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~VvLvGG 230 (379)
....+.++ +|.. +.+..+.| |-+|+|.+ ..+.+.+.+.+..+.. ...-..+|+|+||
T Consensus 235 ~~~~~y~LP---Dg~~---------i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG 302 (375)
T PTZ00452 235 SQDSPYKLP---DGNI---------LTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGG 302 (375)
T ss_pred CcCceEECC---CCCE---------EEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecc
Confidence 01112221 2222 22223322 22333432 2456677777776543 2344678999999
Q ss_pred CCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 231 STRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 231 ~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
+|.+|++.++|++.+...- |+. + + ..+..+.++..++=.|+++.|.
T Consensus 303 ~Sl~~Gf~~RL~~El~~~~-----p~~-----~----~-----------v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 303 TTLFPGIANRLSNELTNLV-----PSQ-----L----K-----------IQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred cccccCHHHHHHHHHHHhC-----CCC-----c----e-----------eEEecCCCcceeEEECchhhcC
Confidence 9999999999998885310 000 0 0 1233345677788889998876
No 49
>KOG0679|consensus
Probab=98.86 E-value=1.1e-07 Score=87.78 Aligned_cols=95 Identities=18% Similarity=0.267 Sum_probs=78.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEe
Q psy4399 19 SNAVITVPAYFNDSQRQATKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE 97 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~-a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~ 97 (379)
--++||-|++-+.+.|+.+.+ +.+...++...++.+|+++|++.+. .+.+|||+|+++|.++-+.
T Consensus 107 hP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr------------stalVvDiGa~~~svsPV~-- 172 (426)
T KOG0679|consen 107 HPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR------------STALVVDIGATHTSVSPVH-- 172 (426)
T ss_pred cceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC------------CceEEEEecCCCceeeeee--
Confidence 468999999999999988877 5677788999999999999997643 3459999999999999887
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy4399 98 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 128 (379)
Q Consensus 98 ~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~ 128 (379)
+|..-..+... ..+||+.++..+.+.|..+
T Consensus 173 DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 173 DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 66555555555 6899999999998888655
No 50
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.86 E-value=5.2e-08 Score=88.50 Aligned_cols=194 Identities=18% Similarity=0.195 Sum_probs=120.2
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCc-------------------eeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcC
Q psy4399 25 VPAYFNDSQRQATKDSGTIAGLN-------------------VLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLG 85 (379)
Q Consensus 25 vPa~~~~~~r~~l~~a~~~AGl~-------------------~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~G 85 (379)
-|..|.....+.++++.+.+|++ .-..++|-+|-+.+...-.. ..=.|+|+|
T Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~i~~Tg~~~~~v~~~~~~~~ei~~~~~g~~~~~~---------~~~~vidiG 99 (248)
T TIGR00241 29 DTTPVIEETARAILEALKEAGIGLEPIDKIVATGYGRHKVGFADKIVTEISCHGKGANYLAP---------EARGVIDIG 99 (248)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCChhheeEEEEECCCcccccccCCceEEhhHHHHHHHHHCC---------CCCEEEEec
Confidence 34556666678888888776652 01346677665554322211 112599999
Q ss_pred CceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC----C
Q psy4399 86 GGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS----S 161 (379)
Q Consensus 86 ggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~----~ 161 (379)
|..+-+..++ ++..........+..|+..|.+.+++.+--.+. +++.++..-.. +
T Consensus 100 gqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~~~-------------------e~~~~~~~~~~~~~~~ 158 (248)
T TIGR00241 100 GQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVSVE-------------------ELGSLAEKADRKAKIS 158 (248)
T ss_pred CCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCCHH-------------------HHHHHHhcCCCCCCcC
Confidence 9999988887 565555556676888998888888776632222 33333333111 1
Q ss_pred ceeEEEeec-ccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcC-EEEEEcCCCChHHHHH
Q psy4399 162 TQASIEIDS-LFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIH-DIVLVGGSTRIPKVQK 239 (379)
Q Consensus 162 ~~~~~~i~~-~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~-~VvLvGG~sr~p~v~~ 239 (379)
..+.+..+. .... +... ...++++..+.+.+...+.+.+...+ ++ .|+|+||.++++++.+
T Consensus 159 ~~c~vf~~s~vi~~--l~~g----------~~~~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~ 221 (248)
T TIGR00241 159 SMCTVFAESELISL--LAAG----------VKKEDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVK 221 (248)
T ss_pred CEeEEEechhHHHH--HHCC----------CCHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHH
Confidence 112111110 0000 0001 11245556666667766666665443 34 7999999999999999
Q ss_pred HHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHH
Q psy4399 240 LLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAV 298 (379)
Q Consensus 240 ~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~ 298 (379)
.+++.++ .++..+.+|..+.|+|||+
T Consensus 222 ~l~~~lg---------------------------------~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 222 ALEKKLG---------------------------------MKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred HHHHHhC---------------------------------CcEEcCCCccHHHHHHHHh
Confidence 9999996 4677788999999999997
No 51
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.80 E-value=1.4e-06 Score=90.25 Aligned_cols=268 Identities=17% Similarity=0.226 Sum_probs=148.9
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHc--------CCc--------------------ee-eeccchHHHHHHhcccc-
Q psy4399 17 TVSNAVITVPAYFNDSQRQATKDSGTIA--------GLN--------------------VL-RIINEPTAAAIAYGLDK- 66 (379)
Q Consensus 17 ~~~~~vitvPa~~~~~~r~~l~~a~~~A--------Gl~--------------------~~-~lv~Ep~Aaa~~~~~~~- 66 (379)
....+++|+|+.....+|+.+++.++.| |.. .+ .=-+|+++.=+-|+.+.
T Consensus 455 ~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~ 534 (1002)
T PF07520_consen 455 RLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEI 534 (1002)
T ss_pred hhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHH
Confidence 3568999999999999999999888877 431 01 11245555444442211
Q ss_pred ----------------ccCC-----CCCCCCceEEEEEcCCceeEEEEEEEe----CCeEEE-----EEecCCCCCCHHH
Q psy4399 67 ----------------KVGS-----AAGSGERNVLIFDLGGGTFDVSILTIE----DGIFEV-----KSTAGDTHLGGED 116 (379)
Q Consensus 67 ----------------~~~~-----~~~~~~~~vlVvD~GggT~disv~~~~----~~~~~~-----~~~~~~~~lGG~~ 116 (379)
.... ....+.-.|.-+|+||||||+.|-.+. .|.... +-..| -++.|+|
T Consensus 535 ~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDD 613 (1002)
T PF07520_consen 535 QVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDD 613 (1002)
T ss_pred HHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHH
Confidence 0011 012234568899999999999888765 221111 12223 5788999
Q ss_pred HHHHHHHH-HHHHHHHH----------------hccCcccc-HHHH-------------HHHHHHHHHHhhhcCCCceeE
Q psy4399 117 FDNRMVNH-FVQEFKRK----------------YKKDLTTN-KRAL-------------RRLRTACERAKRTLSSSTQAS 165 (379)
Q Consensus 117 id~~l~~~-l~~~~~~~----------------~~~~~~~~-~~~~-------------~~L~~~~e~~K~~ls~~~~~~ 165 (379)
|-..+++. ++..+.+. ++.+-... .+.+ .+++.++|+.-. +.......
T Consensus 614 iLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~-~~~~~~~~ 692 (1002)
T PF07520_consen 614 ILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDP-LDPSAEID 692 (1002)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCcccc
Confidence 98777654 44333322 12220000 0000 112223332111 00011111
Q ss_pred EEeecccC--------------------CcceeeeeecccccccHHHHHHHHH---HHhhchhhHHHHHHHHhcCCcCCc
Q psy4399 166 IEIDSLFE--------------------GVDFYTSVTRARLSVTRARFEELNA---DLFRGTMEPVEKSLRDAKMDKAQI 222 (379)
Q Consensus 166 ~~i~~~~~--------------------~~~~~~~i~~~~~~ltr~~~~~~~~---~~~~~i~~~i~~~l~~~~~~~~~i 222 (379)
..+..+.. .....+.+-.-.+.++.+++...+. -.+..++..+-+++..- +.
T Consensus 693 ~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~C 767 (1002)
T PF07520_consen 693 ATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DC 767 (1002)
T ss_pred ccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CC
Confidence 11111111 0011122233345566777777654 34444444444444433 35
Q ss_pred CEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHH
Q psy4399 223 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 302 (379)
Q Consensus 223 ~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~ 302 (379)
|.++|+|--||+|.|+..+.+..+--+.++.....+-.-.|.. |+... ...||...||.||.+++-.
T Consensus 768 DVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~tg~WYP-----------F~~~~--rI~dPKTTaaVGAmLc~La 834 (1002)
T PF07520_consen 768 DVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRTGNWYP-----------FNDQG--RIDDPKTTAAVGAMLCLLA 834 (1002)
T ss_pred CEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeeeccccc-----------CCCCC--cCCCchHHHHHHHHHHHHh
Confidence 7899999999999999999999986556666666665555662 32222 6779999999999998765
Q ss_pred Hh
Q psy4399 303 LH 304 (379)
Q Consensus 303 l~ 304 (379)
..
T Consensus 835 ~~ 836 (1002)
T PF07520_consen 835 EG 836 (1002)
T ss_pred cc
Confidence 54
No 52
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.48 E-value=3.3e-06 Score=82.30 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=76.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEe
Q psy4399 19 SNAVITVPAYFNDSQRQATKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE 97 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~-a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~ 97 (379)
..+++|-|..+...+|+.+.+ +.+...++.+.+..++.+++++.+.. ..+.+|+|+|.+.|+++-+-
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~----------~~~g~ViD~G~~~t~v~PV~-- 174 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSS----------DETGLVIDSGDSVTHVIPVV-- 174 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCC----------CCceEEEEcCCCceeeEeee--
Confidence 379999999999999998877 67777889999999999988876553 24669999999999998776
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy4399 98 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 128 (379)
Q Consensus 98 ~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~ 128 (379)
+|..--.+. ....+||++++..|.+.+...
T Consensus 175 DG~~l~~a~-~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 175 DGIVLPKAV-KRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred ccccccccc-eeeecCcHHHHHHHHHHHhhc
Confidence 443222232 337899999999999888774
No 53
>KOG0797|consensus
Probab=98.32 E-value=2.1e-06 Score=81.97 Aligned_cols=92 Identities=22% Similarity=0.298 Sum_probs=72.1
Q ss_pred cEEEEcCCCCCHHHHHHHHH-HHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeC
Q psy4399 20 NAVITVPAYFNDSQRQATKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIED 98 (379)
Q Consensus 20 ~~vitvPa~~~~~~r~~l~~-a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~ 98 (379)
.+|+-||-.|...+.+.+.. .....||....++-|+.|+.+..++.. ..|||+|+-+|.++.++ +
T Consensus 229 ~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss------------~CVVdiGAQkTsIaCVE--d 294 (618)
T KOG0797|consen 229 HAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSS------------ACVVDIGAQKTSIACVE--D 294 (618)
T ss_pred eEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccc------------eeEEEccCcceeEEEee--c
Confidence 68999999999988666655 566779999999999999998776653 38999999999998887 5
Q ss_pred CeEEEEEecCCCCCCHHHHHHHHHHHHH
Q psy4399 99 GIFEVKSTAGDTHLGGEDFDNRMVNHFV 126 (379)
Q Consensus 99 ~~~~~~~~~~~~~lGG~~id~~l~~~l~ 126 (379)
|+. ...+.-....||+||++.++-+++
T Consensus 295 Gvs-~~ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 295 GVS-LPNTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred Ccc-ccCceEEeccCCchHHHHHHHHHH
Confidence 532 222222368899999998876554
No 54
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.31 E-value=3e-05 Score=70.92 Aligned_cols=206 Identities=16% Similarity=0.100 Sum_probs=111.1
Q ss_pred EcCCCCCH--HHHHHHHHHHHHcCCc--e-----------------eeeccchHHHHHHhccccccCCCCCCCCceEEEE
Q psy4399 24 TVPAYFND--SQRQATKDSGTIAGLN--V-----------------LRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIF 82 (379)
Q Consensus 24 tvPa~~~~--~~r~~l~~a~~~AGl~--~-----------------~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVv 82 (379)
..|..|+. ..++.+.++.+.+|+. . -..++|-+|-+.+...... +..=-|+
T Consensus 59 ~~~tg~~~~~~a~~~l~~~l~~~g~~~~~v~~~~~TGyGr~~~~~a~~~v~EItaha~Ga~~~~p--------p~v~tII 130 (293)
T TIGR03192 59 SMRTGNNSPDSAKNALQGIMDKIGMKLEDINYVVGTGYGRVNVPFAHKAITEIACHARGANYMGG--------NAVRTIL 130 (293)
T ss_pred eecCCCCHHHHHHHHHHHHHHHcCCcccceEEEEEECcchhhcchhhcceeeHHHHHHHHHHhcC--------CCCCEEE
Confidence 36888874 5578888888888762 1 1226777776655433210 1223899
Q ss_pred EcCCceeEEEEEEE-eCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHh-hhcCC
Q psy4399 83 DLGGGTFDVSILTI-EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK-RTLSS 160 (379)
Q Consensus 83 D~GggT~disv~~~-~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K-~~ls~ 160 (379)
|+||--+- ++++ .+|.+.-...+..+.-|--.|-+.+++.|- .++ ..+.. .+.+.+ ....-
T Consensus 131 DIGGQDsK--~I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lg--------i~l----eel~~---~a~~~~~~p~~I 193 (293)
T TIGR03192 131 DMGGQDCK--AIHCDEKGKVTNFLMNDKCAAGTGRGMEVISDLMQ--------IPI----ADLGP---RSFDVETEPEAV 193 (293)
T ss_pred EeCCCceE--EEEEcCCCcEeeeeecCcccccccHHHHHHHHHcC--------CCH----HHHHH---HHHhcCCCCCCc
Confidence 99997555 4444 355444444444455554444444444432 111 11111 111111 11111
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
+..+.+.-+.-.- .-.....+ + ++++..+...+.+.+...+++.++. ..|+|+||.++.+.+++.
T Consensus 194 ss~CtVFAeSevi-~l~~~G~~-------~---edI~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~a 258 (293)
T TIGR03192 194 SSICVVFAKSEAL-GLLKAGYT-------K---NMVIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKR 258 (293)
T ss_pred CCcceEeccHhHH-HHHHCCCC-------H---HHHHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHH
Confidence 2222222111000 00011122 3 2333445555555555555444433 469999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCcccc-CCCChhhHHHhhHHHHHHH
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELN-KSINPDEAVAYGAAVQAAI 302 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~aVA~Gaa~~a~~ 302 (379)
+++.++. ++. .+.+|+.+-|+|||++|..
T Consensus 259 l~~~Lg~---------------------------------~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 259 IERILGI---------------------------------KAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHhCC---------------------------------CceeCCCCccHHHHHHHHHHHHH
Confidence 9999974 343 4678999999999999864
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.19 E-value=3.2e-05 Score=73.55 Aligned_cols=69 Identities=26% Similarity=0.327 Sum_probs=51.6
Q ss_pred HHHHHhhchhhHHHH-HHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhh
Q psy4399 196 LNADLFRGTMEPVEK-SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQ 274 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (379)
++..+...+.+.+.. +++..+.. +.|+++||.++.+.+.+.+++.++
T Consensus 333 IaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~Lg---------------------------- 380 (404)
T TIGR03286 333 VAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLLG---------------------------- 380 (404)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHhC----------------------------
Confidence 334444455544443 34433333 459999999999999999999997
Q ss_pred hcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 275 DFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 275 ~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
.++..+.+|+.+-|+|||++|.
T Consensus 381 -----~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 381 -----IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred -----CcEEECCcccHHHHHHHHHHhc
Confidence 4677788999999999999885
No 56
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.15 E-value=5.3e-05 Score=68.37 Aligned_cols=208 Identities=13% Similarity=0.070 Sum_probs=108.7
Q ss_pred cCC-CCCH--HHHHHHHHHHHHcCCc---ee---------------eeccchHHHHHHhccccccCCCCCCCCceEEEEE
Q psy4399 25 VPA-YFND--SQRQATKDSGTIAGLN---VL---------------RIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFD 83 (379)
Q Consensus 25 vPa-~~~~--~~r~~l~~a~~~AGl~---~~---------------~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD 83 (379)
.|. .|+. ..++.+.++.+.+|+. .. ..++|-+|-+.+..... +..=-|+|
T Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~i~~TGYGR~~~~a~~~vtEIt~ha~GA~~~~---------p~~~tIiD 103 (262)
T TIGR02261 33 DRIRQRDPFKLAEDAYDDLLEEAGLAAADVAYCATTGEGESLAFHTGHFYSMTTHARGAIYLN---------PEARAVLD 103 (262)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHcCCChhheEEEEEECCchhhhhhcCCeeEEeHHHHHHHHHC---------CCCCEEEE
Confidence 443 4553 4578888888888872 11 33567666655543321 12228999
Q ss_pred cCCceeEEEEEEE-eCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCc
Q psy4399 84 LGGGTFDVSILTI-EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST 162 (379)
Q Consensus 84 ~GggT~disv~~~-~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~ 162 (379)
+||--+- ++++ .+|...-...+..+.-|--.|-+.+++.|--.+ ..|-..+.++++...-+.
T Consensus 104 IGGQD~K--~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L~i~l---------------eel~~~a~~~~~~~~iss 166 (262)
T TIGR02261 104 IGALHGR--AIRMDERGKVEAYKMTSQCASGSGQFLENIARYLGIAQ---------------DEIGSLSQQADNPEKVSG 166 (262)
T ss_pred eCCCceE--EEEEcCCCcEeeEEecCcccccccHHHHHHHHHhCCCH---------------HHHHHHHhcCCCCCCcCC
Confidence 9997665 4554 245444444444444454444444444432111 111112233332222222
Q ss_pred eeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHH
Q psy4399 163 QASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 242 (379)
Q Consensus 163 ~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~ 242 (379)
.+.+.-+...-. -.....+ + ++++..+...+.+.+...++..+.. -..|+|+||.++.+.+.+.++
T Consensus 167 ~CtVFaeSevi~-~~~~G~~-------~---edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le 232 (262)
T TIGR02261 167 ICAVLAETDVIN-MVSRGIS-------A---PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALK 232 (262)
T ss_pred CceEEchhhHHH-HHHCCCC-------H---HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHH
Confidence 232222110000 0011122 3 3334455555555555555544322 145999999999999999999
Q ss_pred HHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 243 DFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 243 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
+.++...+. ..+..+.+|+.+-|+|||++|
T Consensus 233 ~~l~~~~~~----------------------------~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 233 DAIQEAKMA----------------------------VAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHhccCCcc----------------------------eEecCCCcchHHHHHHHHHcC
Confidence 999641100 124446689999999999864
No 57
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.15 E-value=6.2e-06 Score=79.44 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=59.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHH------------cCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCc
Q psy4399 20 NAVITVPAYFNDSQRQATKDSGTI------------AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGG 87 (379)
Q Consensus 20 ~~vitvPa~~~~~~r~~l~~a~~~------------AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~Ggg 87 (379)
-.+||-++. .+++++++++. ||++.-.++. |.|++.+.+.. + ++..++++|+|||
T Consensus 90 ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E-------ke~gVa~IDIGgG 156 (475)
T PRK10719 90 AVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E-------RNTRVLNIDIGGG 156 (475)
T ss_pred EEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h-------ccCceEEEEeCCC
Confidence 467777554 45566667776 6666655555 99999887743 3 6788999999999
Q ss_pred eeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHH
Q psy4399 88 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120 (379)
Q Consensus 88 T~disv~~~~~~~~~~~~~~~~~~lGG~~id~~ 120 (379)
||++++++ +|.+. . .+..++||++++..
T Consensus 157 TT~iaVf~--~G~l~--~-T~~l~vGG~~IT~D 184 (475)
T PRK10719 157 TANYALFD--AGKVI--D-TACLNVGGRLIETD 184 (475)
T ss_pred ceEEEEEE--CCEEE--E-EEEEecccceEEEC
Confidence 99999998 55332 2 22378999988654
No 58
>KOG0676|consensus
Probab=98.12 E-value=4e-05 Score=72.42 Aligned_cols=92 Identities=16% Similarity=0.279 Sum_probs=61.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHH-HHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEe
Q psy4399 19 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE 97 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~a~-~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~ 97 (379)
.-+++|-|..|....|+.|.+.. +.-+.+.+.+-. .|.. |.... .+=+|+|+|.|-|++.-+-
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~--qavl--ya~g~----------ttG~VvD~G~gvt~~vPI~-- 163 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAI--QAVL--YASGR----------TTGLVVDSGDGVTHVVPIY-- 163 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHH--HHHH--HHcCC----------eeEEEEEcCCCceeeeecc--
Confidence 57999999999999999998854 444555555522 3333 33322 2239999999987654332
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy4399 98 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 127 (379)
Q Consensus 98 ~~~~~~~~~~~~~~lGG~~id~~l~~~l~~ 127 (379)
+| +.....-....+||+++++.+...|.+
T Consensus 164 eG-~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 164 EG-YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred cc-cccchhhheecccchhhHHHHHHHHHh
Confidence 34 333333444789999999977777766
No 59
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.11 E-value=0.0001 Score=68.72 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=93.2
Q ss_pred EEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcC
Q psy4399 80 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLS 159 (379)
Q Consensus 80 lVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls 159 (379)
.|+|+||- |.-++++.+|...-...+.-+.-|--.|-+.+++.|- .+ +..+-+.+++.+..-.
T Consensus 232 tIiDIGGQ--D~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~Lg--------v~-------v~E~~~~A~~~~~~v~ 294 (396)
T COG1924 232 TVIDIGGQ--DSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIARRLG--------VD-------VEELGKLALKATPPVK 294 (396)
T ss_pred EEEEecCc--ceeEEEEeCCeeeeeEeccccccccchHHHHHHHHhC--------CC-------HHHHHHHHhcCCCCcc
Confidence 89999995 6666666688666555454444443344444444332 11 1122223344433222
Q ss_pred CCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHH-HHHHhcCCcCCcCEEEEEcCCCChHHHH
Q psy4399 160 SSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEK-SLRDAKMDKAQIHDIVLVGGSTRIPKVQ 238 (379)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~VvLvGG~sr~p~v~ 238 (379)
-+..+.+..+.-.- .-... -...|+++..+...+...+-. +++.-++. +-|+|+||.+....+.
T Consensus 295 i~S~CaVF~eSevi-~~~~~----------G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i~----~~iv~~GGva~n~av~ 359 (396)
T COG1924 295 INSRCAVFAESEVI-SALAE----------GASPEDILAGLAYSVAENVAEKVIKRVDIE----EPIVLQGGVALNKAVV 359 (396)
T ss_pred cCCeeEEEehHHHH-HHHHc----------CCCHHHHHHHHHHHHHHHHHHHHhhccCCC----CCEEEECcchhhHHHH
Confidence 22222222111000 00001 122455666666666665555 55554444 2299999999999999
Q ss_pred HHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHH
Q psy4399 239 KLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 302 (379)
Q Consensus 239 ~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~ 302 (379)
..+++.++ .++..+.+|+..-|.|||++|..
T Consensus 360 ~ale~~lg---------------------------------~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 360 RALEDLLG---------------------------------RKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHhC---------------------------------CeeecCCccchhhHHHHHHHHhh
Confidence 99999997 57889999999999999999864
No 60
>KOG0677|consensus
Probab=98.07 E-value=3.4e-05 Score=67.88 Aligned_cols=243 Identities=18% Similarity=0.247 Sum_probs=142.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEE
Q psy4399 18 VSNAVITVPAYFNDSQRQATKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~-a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~ 96 (379)
-.++.+|-|+--....|+.|.+ ..+..|+.-+.+.-.+.-+.++-+.... +|+|-|.|-|.+.-+-
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tG------------vVvDSGDGVTHi~PVy- 167 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTG------------VVVDSGDGVTHIVPVY- 167 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccce------------EEEecCCCeeEEeeee-
Confidence 3478999999999999999988 5677899888887776666655444433 8999999999986553
Q ss_pred eCC-eEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC-----------cee
Q psy4399 97 EDG-IFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS-----------TQA 164 (379)
Q Consensus 97 ~~~-~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~-----------~~~ 164 (379)
++ .+..+ .+...+.|+++++-+.+.+..+-- ......+-+ .++..|+.|.-. .++
T Consensus 168 -e~~~l~HL--trRldvAGRdiTryLi~LLl~rGY---afN~tADFE-------TVR~iKEKLCYisYd~e~e~kLalET 234 (389)
T KOG0677|consen 168 -EGFVLPHL--TRRLDVAGRDITRYLIKLLLRRGY---AFNHTADFE-------TVREIKEKLCYISYDLELEQKLALET 234 (389)
T ss_pred -cceehhhh--hhhccccchhHHHHHHHHHHhhcc---ccccccchH-------HHHHHHhhheeEeechhhhhHhhhhh
Confidence 22 12222 233678999999999988865421 111111111 333444443210 011
Q ss_pred EEEee--cccCCcceeeeeecccccccHHHHHHHHHHHhh-----chhhHHHHHHHHhcCC--cCCcCEEEEEcCCCChH
Q psy4399 165 SIEID--SLFEGVDFYTSVTRARLSVTRARFEELNADLFR-----GTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIP 235 (379)
Q Consensus 165 ~~~i~--~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~-----~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~sr~p 235 (379)
++-++ .+.+|.-....-. ++ +.=+.+++|.+- .+.+.+.++++.++++ ..-..+|+|.||++.-|
T Consensus 235 TvLv~~YtLPDGRvIkvG~E--RF----eAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYP 308 (389)
T KOG0677|consen 235 TVLVESYTLPDGRVIKVGGE--RF----EAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYP 308 (389)
T ss_pred eeeeeeeecCCCcEEEecce--ec----cCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCC
Confidence 11111 1112332222211 11 112345556542 4567778888876654 33467899999999999
Q ss_pred HHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCC
Q psy4399 236 KVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 306 (379)
Q Consensus 236 ~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~ 306 (379)
++.+++++.++..++......+... +++ |. .++..+..-..-|-+|.|..|.++...
T Consensus 309 GLPSRLEkElkqlyl~rVL~~d~~~--------l~K-----fk-iRIEdPPrRKhMVflGGAVLA~imkD~ 365 (389)
T KOG0677|consen 309 GLPSRLEKELKQLYLDRVLKGDTDK--------LKK-----FK-IRIEDPPRRKHMVFLGGAVLAGIMKDK 365 (389)
T ss_pred CCcHHHHHHHHHHHHHHHHcCChhh--------hhh-----eE-EeccCCCccceeEEEchHHHHHHhcCC
Confidence 9999999887654443333332211 111 00 222223333557888988888887653
No 61
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.04 E-value=5.3e-05 Score=71.43 Aligned_cols=182 Identities=14% Similarity=0.186 Sum_probs=98.5
Q ss_pred eeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEe-CCeEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy4399 50 RIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE-DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 128 (379)
Q Consensus 50 ~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~-~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~ 128 (379)
.+++|-+|-+.+..... +..=.|+|+||--+- ++++. +|.+.-...+..+.-|.-.|-+.+++.|--.
T Consensus 249 ~vitEItcHA~GA~~l~---------P~vrTIIDIGGQDsK--~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lgi~ 317 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY---------PGTRTVLDIGGQDTK--GIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMNMG 317 (432)
T ss_pred ceeeeHHHHHHHHHHHC---------CCCCEEEEeCCCceE--EEEEcCCCcEeeeeecCcccccchHHHHHHHHHcCCC
Confidence 35578887666543331 122389999997666 45554 3545444444445555444544444443211
Q ss_pred HHHHhccCccccHHHHHHHHHHHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHH
Q psy4399 129 FKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPV 208 (379)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i 208 (379)
+ ..+-..+.++++...-+..+.+.-+.-.-. -.....+ + ++++..+...+...+
T Consensus 318 l---------------eEl~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~-------r---eDIaAGL~~SIA~Rv 371 (432)
T TIGR02259 318 L---------------HELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDK-------R---EDILAGLHRAIILRA 371 (432)
T ss_pred H---------------HHHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCC-------H---HHHHHHHHHHHHHHH
Confidence 1 112222333333333223333222110000 0011122 3 333445555555555
Q ss_pred HHHHHHh-cCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCC
Q psy4399 209 EKSLRDA-KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSIN 287 (379)
Q Consensus 209 ~~~l~~~-~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (379)
...+.+. +.. ..|+|+||.++.+.+.+.+++.++.. +.|.++..+.+
T Consensus 372 ~s~l~r~~~i~----~~VvftGGvA~N~gvv~aLe~~L~~~----------------------------~~~~~V~Vp~~ 419 (432)
T TIGR02259 372 ISIISRSGGIT----DQFTFTGGVAKNEAAVKELRKLIKEN----------------------------YGEVQINIDPD 419 (432)
T ss_pred HHHHhcccCCC----CCEEEECCccccHHHHHHHHHHHccc----------------------------cCCCeEecCCC
Confidence 5555544 222 57999999999999999999999620 01145677889
Q ss_pred hhhHHHhhHHHHH
Q psy4399 288 PDEAVAYGAAVQA 300 (379)
Q Consensus 288 p~~aVA~Gaa~~a 300 (379)
|+.+-|+|||++|
T Consensus 420 pq~~GALGAAL~a 432 (432)
T TIGR02259 420 SIYTGALGASEFA 432 (432)
T ss_pred ccHHHHHHHHHhC
Confidence 9999999999875
No 62
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.67 E-value=0.013 Score=58.42 Aligned_cols=71 Identities=24% Similarity=0.359 Sum_probs=49.4
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccC-CCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN-PDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~ 299 (379)
+-|.++|+|--||+|.|+..+....+- +.++..+ .++-.--|.. |+ +--...||...+|.||-++
T Consensus 778 ~cDVlLlTGRPsrlPgvqalfr~~~pv-p~~rilpl~~Yrvg~WYP-----------F~--k~grIddPKtTAaVGAMLC 843 (1014)
T COG4457 778 DCDVLLLTGRPSRLPGVQALFRHLQPV-PVNRILPLDDYRVGTWYP-----------FR--KQGRIDDPKTTAAVGAMLC 843 (1014)
T ss_pred cccEEEEcCCcccCccHHHHHhhcCCC-CCCceEeccceeccceec-----------cc--ccCcCCCcchHHHHHHHHH
Confidence 457899999999999999999988764 3333333 3334444542 11 2344679999999999998
Q ss_pred HHHHhC
Q psy4399 300 AAILHG 305 (379)
Q Consensus 300 a~~l~~ 305 (379)
+-.+.-
T Consensus 844 ~Lsl~~ 849 (1014)
T COG4457 844 ALSLEL 849 (1014)
T ss_pred HHHhhc
Confidence 876543
No 63
>PRK13317 pantothenate kinase; Provisional
Probab=97.59 E-value=0.0031 Score=58.00 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=42.2
Q ss_pred CcCEEEEEc-CCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHH
Q psy4399 221 QIHDIVLVG-GSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299 (379)
Q Consensus 221 ~i~~VvLvG-G~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~ 299 (379)
.+..|+++| |.++.|.+++.+++.+.- .+.++..+.+|+.+.|+|||++
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~------------------------------~~~~~~~p~~~~~~gAlGAaL~ 271 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKL------------------------------RNCTPIFLENGGYSGAIGALLL 271 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhc------------------------------CCceEEecCCCchhHHHHHHHH
Confidence 357899999 799999999999998741 0146777889999999999998
Q ss_pred HH
Q psy4399 300 AA 301 (379)
Q Consensus 300 a~ 301 (379)
+.
T Consensus 272 a~ 273 (277)
T PRK13317 272 AT 273 (277)
T ss_pred hh
Confidence 75
No 64
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.11 E-value=0.00088 Score=58.40 Aligned_cols=75 Identities=24% Similarity=0.344 Sum_probs=52.7
Q ss_pred HHHHHHHhhchhhHHHHHHHHhcCC-cCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhh
Q psy4399 194 EELNADLFRGTMEPVEKSLRDAKMD-KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKL 272 (379)
Q Consensus 194 ~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (379)
.+++.-+++.+.-.++..++..... ...++.|+++||.++++.+.+.+.+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~------------------------- 175 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGR------------------------- 175 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTS-------------------------
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCC-------------------------
Confidence 3444455555555555555433111 23489999999999999999999999973
Q ss_pred hhhcccCccccCCCChhhHHHhhHHHHHHH
Q psy4399 273 LQDFFNGKELNKSINPDEAVAYGAAVQAAI 302 (379)
Q Consensus 273 ~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~ 302 (379)
++.... ..++.|.|||+.|+.
T Consensus 176 --------~V~~~~-~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 176 --------PVVRPE-VEEASALGAALLAAV 196 (198)
T ss_dssp --------EEEEES-SSTHHHHHHHHHHHH
T ss_pred --------ceEeCC-CCchHHHHHHHHHHh
Confidence 444443 389999999999874
No 65
>KOG0680|consensus
Probab=96.96 E-value=0.012 Score=53.73 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=58.7
Q ss_pred CcEEEEcCCCCCHH-HHHHHHHHHHHcCCceeeeccchHHHHHHhccc-cccCCCCCCCCceEEEEEcCCceeEEEEEEE
Q psy4399 19 SNAVITVPAYFNDS-QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLD-KKVGSAAGSGERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 19 ~~~vitvPa~~~~~-~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~-~~~~~~~~~~~~~vlVvD~GggT~disv~~~ 96 (379)
..+++|-|..--+. +.....-..+..++..+.=. +.|+..++-.. ...+..-.......+|+|-|.+-|.+.-+-
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kt--taa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v- 170 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKT--TAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV- 170 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccceEeec--CHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh-
Confidence 46889988754443 44444445666677654332 33333333211 111111112457899999999988875554
Q ss_pred eCCeEEEEEecCCCCCCHHHHHHHHHHHHH
Q psy4399 97 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 126 (379)
Q Consensus 97 ~~~~~~~~~~~~~~~lGG~~id~~l~~~l~ 126 (379)
.+.....+... ..+||..+++.|.+++.
T Consensus 171 -~g~~~~qaV~R-iDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 -KGIPYYQAVKR-IDVGGKALTNLLKETIS 198 (400)
T ss_pred -cCcchhhceEE-eecchHHHHHHHHHHhh
Confidence 33222233333 68999999999887664
No 66
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.85 E-value=0.03 Score=55.01 Aligned_cols=191 Identities=17% Similarity=0.140 Sum_probs=103.1
Q ss_pred EEEEcCCceeEEEEEEEe---CC----eEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccC--ccc-----cHHHHH
Q psy4399 80 LIFDLGGGTFDVSILTIE---DG----IFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD--LTT-----NKRALR 145 (379)
Q Consensus 80 lVvD~GggT~disv~~~~---~~----~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~--~~~-----~~~~~~ 145 (379)
|++=+|-+|+++..-... .| ....+....-..-||..-.=.+.+|+.+...-..... ..+ ......
T Consensus 271 l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~ 350 (544)
T COG1069 271 LAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQ 350 (544)
T ss_pred EEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHH
Confidence 455578888887665521 11 1111111111345777777778888876642111000 000 011223
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeec-ccC-----CcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCc
Q psy4399 146 RLRTACERAKRTLSSSTQASIEIDS-LFE-----GVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDK 219 (379)
Q Consensus 146 ~L~~~~e~~K~~ls~~~~~~~~i~~-~~~-----~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~ 219 (379)
.+..-+++++...+....-. .++. ..+ +-.....|..-.+.-+.+.+..+....+..+.--.+..++.-....
T Consensus 351 ~~~~l~~~~~~~~~l~~~l~-~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g 429 (544)
T COG1069 351 RLELLTEAAAAIPPLASGLH-VLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQG 429 (544)
T ss_pred HHHHHHhhHhccCcccCCcE-ecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC
Confidence 33333444454443222111 1111 111 2233344443344444665666666666665544444443322233
Q ss_pred CCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHH
Q psy4399 220 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299 (379)
Q Consensus 220 ~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~ 299 (379)
..|+.++..||-.+.|.+.+......+. ++..+ ..++++++|+|+.
T Consensus 430 ~~Id~l~~sGG~~KN~llmql~aDvtg~---------------------------------~v~i~-~s~~a~llGsAm~ 475 (544)
T COG1069 430 IAIDTLFASGGIRKNPLLMQLYADVTGR---------------------------------PVVIP-ASDQAVLLGAAMF 475 (544)
T ss_pred CeeeEEEecCCcccCHHHHHHHHHhcCC---------------------------------eEEee-cccchhhhHHHHH
Confidence 4489999999999999999999999873 33333 7789999999999
Q ss_pred HHHHhC
Q psy4399 300 AAILHG 305 (379)
Q Consensus 300 a~~l~~ 305 (379)
++.-.|
T Consensus 476 ~avAag 481 (544)
T COG1069 476 AAVAAG 481 (544)
T ss_pred HHHHhc
Confidence 998776
No 67
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=96.81 E-value=0.0079 Score=48.03 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=29.2
Q ss_pred EEEEEcCCceeEEEEEEEe-CCeEEEEEecCCCCCC--------HHHHH--HHHHHHHHHHHH
Q psy4399 79 VLIFDLGGGTFDVSILTIE-DGIFEVKSTAGDTHLG--------GEDFD--NRMVNHFVQEFK 130 (379)
Q Consensus 79 vlVvD~GggT~disv~~~~-~~~~~~~~~~~~~~lG--------G~~id--~~l~~~l~~~~~ 130 (379)
++++|+|++++.+.+++.. .+.+.++ .+| |.+++ +.+.+-+...+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl------~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~ 57 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVL------GVGEVPSKGIKGGHITDIEDISKAIKIAIE 57 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEE------S----------HHHHH--HHHHHHHT--HH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEE------EEecccccccCCCEEEEHHHHHHHHHHHHH
Confidence 5899999999999999962 2233443 355 77787 777766655544
No 68
>PRK15027 xylulokinase; Provisional
Probab=96.50 E-value=0.0069 Score=60.63 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=52.4
Q ss_pred HHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhccc
Q psy4399 199 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFN 278 (379)
Q Consensus 199 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (379)
.+++.+.-.++..++........++.|+++||+++++...+.+.+.++
T Consensus 364 AvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g-------------------------------- 411 (484)
T PRK15027 364 AVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISG-------------------------------- 411 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHhC--------------------------------
Confidence 444444444444333221112247899999999999999999999997
Q ss_pred CccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 279 GKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 279 ~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.++....+.+++.|+|||+.|+.-.|
T Consensus 412 -~pv~~~~~~~~~~a~GaA~lA~~~~G 437 (484)
T PRK15027 412 -QQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_pred -CeEEeecCCCcchHHHHHHHHHHhcC
Confidence 45555556777889999999997776
No 69
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.48 E-value=0.01 Score=60.27 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccc
Q psy4399 189 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQP 268 (379)
Q Consensus 189 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 268 (379)
+|..+..++..+++.+.=.++..++........++.|.++||+++++...+.+...++
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg---------------------- 468 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACD---------------------- 468 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHC----------------------
Confidence 4666677777777777766666665432222347899999999999999999999997
Q ss_pred hhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 269 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.++....++ ++.++|||+.|+.-.|
T Consensus 469 -----------~pV~~~~~~-e~~alGaA~lA~~~~G 493 (541)
T TIGR01315 469 -----------MPVLIPYVN-EAVLHGAAMLGAKAAG 493 (541)
T ss_pred -----------CeeEecChh-HHHHHHHHHHHHHhcC
Confidence 455555444 5789999999987666
No 70
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.37 E-value=0.16 Score=46.70 Aligned_cols=49 Identities=27% Similarity=0.219 Sum_probs=40.6
Q ss_pred CCcCEEEEEcC-CCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHH
Q psy4399 220 AQIHDIVLVGG-STRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAV 298 (379)
Q Consensus 220 ~~i~~VvLvGG-~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~ 298 (379)
..+..|+++|| .+..|.+++.+...+.= |+ .+...+.|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~---------------~~---------------~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNF---------------WS---------------KKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhh---------------cC---------------ceEEEECCcchHHHhhhcc
Confidence 34789999999 77889999999998752 33 5677788999999999996
No 71
>PLN02669 xylulokinase
Probab=96.26 E-value=0.013 Score=59.52 Aligned_cols=71 Identities=20% Similarity=0.339 Sum_probs=50.3
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhc
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDF 276 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (379)
++.+++.+.=.++..++..+.. ..++.|+++||+|+++.+.+.+.+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~----------------------------- 471 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGC----------------------------- 471 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCC-----------------------------
Confidence 3444555444444444444322 3478999999999999999999999973
Q ss_pred ccCccccCCCChhhHHHhhHHHHHHH
Q psy4399 277 FNGKELNKSINPDEAVAYGAAVQAAI 302 (379)
Q Consensus 277 ~~~~~~~~~~~p~~aVA~Gaa~~a~~ 302 (379)
++.....+ ++.|+|||+.|+.
T Consensus 472 ----pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 472 ----DVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred ----CeEecCCC-CchHHHHHHHHHH
Confidence 44444444 6889999999975
No 72
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.22 E-value=0.42 Score=43.82 Aligned_cols=76 Identities=25% Similarity=0.304 Sum_probs=49.8
Q ss_pred HHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhh
Q psy4399 194 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLL 273 (379)
Q Consensus 194 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (379)
.++++...+.+.+.+...+.+...... .|+|+||..+...+++.+.+.+.....
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~----------------------- 249 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLP----------------------- 249 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcC-----------------------
Confidence 344455556666666666666544321 299999999998787777655542100
Q ss_pred hhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 274 QDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 274 ~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
..++..+..|....|.||+++|
T Consensus 250 -----~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 250 -----KVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp -----CCTCECECCGSSHHHHHHHHHH
T ss_pred -----CCceEECCCCCccHHHHHHHhC
Confidence 0234456789999999999986
No 73
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.91 E-value=0.023 Score=56.80 Aligned_cols=76 Identities=28% Similarity=0.431 Sum_probs=52.0
Q ss_pred HHHHHhhchhhHHHHHHHHhcC-CcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhh
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQ 274 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (379)
++..+++.+.-.++..++.... ....++.|+++||.++++.+.+.+.+.++
T Consensus 364 l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g---------------------------- 415 (481)
T TIGR01312 364 LTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFG---------------------------- 415 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhC----------------------------
Confidence 3334444444444444432211 11247899999999999999999999997
Q ss_pred hcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 275 DFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 275 ~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.++... +..++.|+|||+.|+.-.|
T Consensus 416 -----~pv~~~-~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 416 -----TPVDVP-EGEEGPALGAAILAAWALG 440 (481)
T ss_pred -----Cceeec-CCCcchHHHHHHHHHHhcC
Confidence 344444 4666889999999998776
No 74
>KOG2517|consensus
Probab=95.85 E-value=0.033 Score=54.98 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=57.1
Q ss_pred HHhhchhhHHHHHHHHhcCCc-CCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcc
Q psy4399 199 DLFRGTMEPVEKSLRDAKMDK-AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFF 277 (379)
Q Consensus 199 ~~~~~i~~~i~~~l~~~~~~~-~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (379)
..++.+.-.+++.|+...... ..++.+.+.||.|+.|.+.+.+...++
T Consensus 391 A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g------------------------------- 439 (516)
T KOG2517|consen 391 AALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILG------------------------------- 439 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhC-------------------------------
Confidence 444444444444444333222 468889999999999999999999997
Q ss_pred cCccccCCCChhhHHHhhHHHHHHHHhCCC
Q psy4399 278 NGKELNKSINPDEAVAYGAAVQAAILHGDK 307 (379)
Q Consensus 278 ~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~ 307 (379)
.++..+.+++. ++.|||+.|+..+++.
T Consensus 440 --~pv~~p~~~e~-~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 440 --LPVVRPQDVEA-VALGAAMLAGAASGKW 466 (516)
T ss_pred --CccccccchhH-HHHHHHHHHHhhcCCc
Confidence 46777888888 9999999999999864
No 75
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.78 E-value=0.027 Score=56.55 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=52.1
Q ss_pred HHHHHhhchhhHHHHHHHHhc-CCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhh
Q psy4399 196 LNADLFRGTMEPVEKSLRDAK-MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQ 274 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (379)
++..+++.+.-.+...++... .....++.|.++||+++++...+.+.+.|+
T Consensus 377 l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg---------------------------- 428 (498)
T PRK00047 377 IIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILG---------------------------- 428 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhC----------------------------
Confidence 334444544444444443322 112247899999999999999999999997
Q ss_pred hcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 275 DFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 275 ~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.++... +..++.|+|||+.|+.-.|
T Consensus 429 -----~pV~~~-~~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 429 -----VPVERP-VVAETTALGAAYLAGLAVG 453 (498)
T ss_pred -----CeeEec-CcccchHHHHHHHHhhhcC
Confidence 345433 4556889999999987766
No 76
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=95.77 E-value=0.0082 Score=55.75 Aligned_cols=42 Identities=29% Similarity=0.525 Sum_probs=26.1
Q ss_pred ceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEE
Q psy4399 47 NVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 47 ~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~ 95 (379)
+...+.+-|.|.+........ ..++++++|+||.|||++++.
T Consensus 54 Pv~ti~SGPaas~~ga~~~~~-------g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 54 PVETILSGPAASVIGAAARLT-------GLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp GGCTB--SSHHHHHHHHH--H-------T-SSEEEEEE-SS-EEEEEEE
T ss_pred HHHHhhcCHHHhHhhhhhhcC-------CCCCEEEEeCCCCEEEEEEEE
Confidence 345566677776665544111 346799999999999999997
No 77
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.76 E-value=0.028 Score=56.53 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=51.9
Q ss_pred HHHHHhhchhhHHHHHHHHhcC-CcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhh
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQ 274 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (379)
++..+++.+.-.++..++.... ....++.|.++||+++++.+.+.+.+.|+
T Consensus 380 i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g---------------------------- 431 (504)
T PTZ00294 380 IVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILG---------------------------- 431 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHhC----------------------------
Confidence 3344445444444444433211 11237889999999999999999999997
Q ss_pred hcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 275 DFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 275 ~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.++.... ..++.|+|||+.|+.-.|
T Consensus 432 -----~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 432 -----KDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred -----CceEecC-cccchHHHHHHHHHhhcC
Confidence 3454444 555789999999987766
No 78
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.69 E-value=0.028 Score=56.45 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=50.9
Q ss_pred HHHhhchhhHHHHHHHHhcC-CcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhc
Q psy4399 198 ADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDF 276 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (379)
..+++.+.-.++..++.... ....++.|.++||+++++...+.+.+.|+
T Consensus 375 rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g------------------------------ 424 (493)
T TIGR01311 375 RAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILG------------------------------ 424 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcC------------------------------
Confidence 34444444444444433211 12247899999999999999999999997
Q ss_pred ccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 277 FNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 277 ~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.++... +..++.|+|||+.|+.-.|
T Consensus 425 ---~pv~~~-~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 425 ---VPVVRP-KVTETTALGAAYAAGLAVG 449 (493)
T ss_pred ---CeeEec-CCCcchHHHHHHHHHhhcC
Confidence 345443 4457889999999987766
No 79
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.69 E-value=0.031 Score=56.72 Aligned_cols=51 Identities=29% Similarity=0.501 Sum_probs=42.7
Q ss_pred CcCEEEEEcCC-CChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHH
Q psy4399 221 QIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299 (379)
Q Consensus 221 ~i~~VvLvGG~-sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~ 299 (379)
.++.|+++||+ ++++.+.+.+...|+ .++....+ .++.|+|||+.
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~g---------------------------------~pV~~~~~-~e~~a~GaA~l 480 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVTN---------------------------------RPLQIVAS-DQAPALGAAIF 480 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhhC---------------------------------CeeEeccC-CcchhHHHHHH
Confidence 47899999999 999999999999997 35544544 46889999999
Q ss_pred HHHHhC
Q psy4399 300 AAILHG 305 (379)
Q Consensus 300 a~~l~~ 305 (379)
|+.-.|
T Consensus 481 A~~~~G 486 (536)
T TIGR01234 481 AAVAAG 486 (536)
T ss_pred HHHHcC
Confidence 988776
No 80
>PRK04123 ribulokinase; Provisional
Probab=95.61 E-value=0.03 Score=57.00 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=51.1
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCC-CChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhh
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQD 275 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (379)
+..+++.+.-.+...++........++.|+++||+ ++++.+.+.+.+.|+.
T Consensus 414 ~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~---------------------------- 465 (548)
T PRK04123 414 YRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNR---------------------------- 465 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCC----------------------------
Confidence 44444444434333333222112247889999999 9999999999999973
Q ss_pred cccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 276 FFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 276 ~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
++... .+.++.|+|||+.|+.-.|
T Consensus 466 -----pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 466 -----PIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred -----ceEec-CccccchHHHHHHHHHHhc
Confidence 44333 4567889999999987666
No 81
>PRK10331 L-fuculokinase; Provisional
Probab=95.52 E-value=0.038 Score=55.09 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=51.5
Q ss_pred HHHHhhchhhHHHHHHHHhcC-CcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhh
Q psy4399 197 NADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQD 275 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (379)
...+++.+.-.++..++.... ....++.|.++||+++++...+.+.+.++
T Consensus 364 ~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg----------------------------- 414 (470)
T PRK10331 364 YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLD----------------------------- 414 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcC-----------------------------
Confidence 344445444444444443221 12247899999999999999999999997
Q ss_pred cccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 276 FFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 276 ~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.++.... ..++.++|||+.|+.-.|
T Consensus 415 ----~pV~~~~-~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 415 ----IPIKVLD-DAETTVAGAAMFGWYGVG 439 (470)
T ss_pred ----CeeEecC-cccchHHHHHHHHHHhcC
Confidence 3454444 456889999999987666
No 82
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.49 E-value=0.037 Score=55.07 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=51.1
Q ss_pred HHHHHhhchhhHHHH---HHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhh
Q psy4399 196 LNADLFRGTMEPVEK---SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKL 272 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (379)
++..+++.+.-.++. .+++.+ ...++.|.++||+++++...+.+...++
T Consensus 367 l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~g-------------------------- 418 (465)
T TIGR02628 367 IYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANMLD-------------------------- 418 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhcC--------------------------
Confidence 334444444444443 333332 1236889999999999999999999997
Q ss_pred hhhcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 273 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 273 ~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.++....+ .++.++|||+.|+.-.|
T Consensus 419 -------~pV~~~~~-~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 419 -------IPVKVVDD-AETTVAGAAMFGFYGVG 443 (465)
T ss_pred -------CeeEeccC-CcchHHHHHHHHHHhcC
Confidence 35544444 46789999999987665
No 83
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.39 E-value=0.042 Score=55.31 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=42.7
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++...+.+...|+ .++....++ ++.++|||+.|
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g---------------------------------~pv~~~~~~-e~~a~GaA~la 446 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFE---------------------------------QEIVVPESY-ESSCLGACILG 446 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcC---------------------------------CeeEecCCC-CcchHHHHHHH
Confidence 47899999999999999999999997 355544444 68899999999
Q ss_pred HHHhC
Q psy4399 301 AILHG 305 (379)
Q Consensus 301 ~~l~~ 305 (379)
+.-.|
T Consensus 447 ~~~~G 451 (505)
T TIGR01314 447 LKALG 451 (505)
T ss_pred HHhcC
Confidence 87766
No 84
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=95.38 E-value=0.062 Score=49.79 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=42.9
Q ss_pred HHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHH
Q psy4399 37 TKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 116 (379)
Q Consensus 37 l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~ 116 (379)
+.++-+..|++.-.+=.|-+|...+.+...... .....+++|+|||+|.++.++ ++.+.... ..++|.-.
T Consensus 77 ~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~-----~~~~~lviDIGGGStEl~~~~--~~~~~~~~---Sl~lG~vr 146 (285)
T PF02541_consen 77 LDRIKKETGIDIEIISGEEEARLSFLGVLSSLP-----PDKNGLVIDIGGGSTELILFE--NGKVVFSQ---SLPLGAVR 146 (285)
T ss_dssp HHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHST-----TTSSEEEEEEESSEEEEEEEE--TTEEEEEE---EES--HHH
T ss_pred HHHHHHHhCCceEEecHHHHHHHHHHHHHhhcc-----ccCCEEEEEECCCceEEEEEE--CCeeeEee---eeehHHHH
Confidence 444556669877444444444433333333321 356789999999999999997 44332222 16889877
Q ss_pred HHHHH
Q psy4399 117 FDNRM 121 (379)
Q Consensus 117 id~~l 121 (379)
+.+.+
T Consensus 147 l~e~~ 151 (285)
T PF02541_consen 147 LTERF 151 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 85
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.29 E-value=0.052 Score=53.85 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=41.7
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++...+.+.+.++. ++... +.++.|+|||+.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~---------------------------------pV~~~--~~e~~a~GaA~~a 431 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGI---------------------------------RVIAG--PVEASTLGNIGVQ 431 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCC---------------------------------ceEcC--CchHHHHHHHHHH
Confidence 478999999999999999999999973 45332 3678999999999
Q ss_pred HHHhC
Q psy4399 301 AILHG 305 (379)
Q Consensus 301 ~~l~~ 305 (379)
+.-.|
T Consensus 432 ~~~~G 436 (454)
T TIGR02627 432 LMALD 436 (454)
T ss_pred HHhcC
Confidence 87666
No 86
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.099 Score=48.84 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=48.9
Q ss_pred HhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccC
Q psy4399 200 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNG 279 (379)
Q Consensus 200 ~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (379)
.++-+.+..+++++..+ .+.++++||-+....+|+++++.....+.++..|+
T Consensus 245 v~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~----------------------- 296 (342)
T COG0533 245 VFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMCKERGAEVYIPP----------------------- 296 (342)
T ss_pred HHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCC-----------------------
Confidence 44555566666666655 46799999999999999999998854444444333
Q ss_pred ccccCCCChhhHHHhhHHHHHH
Q psy4399 280 KELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 280 ~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
.-.++.|.-.-...|+.++..
T Consensus 297 -~~lCtDNaaMIA~ag~~~~~~ 317 (342)
T COG0533 297 -LELCTDNAAMIAYAGLLRYKA 317 (342)
T ss_pred -hHhccchHHHHHHHHHHHHHc
Confidence 234556666666666665544
No 87
>PLN02295 glycerol kinase
Probab=95.19 E-value=0.052 Score=54.74 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=42.5
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++...+.+.+.|+ .++... +..++.|+|||+.|
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g---------------------------------~pV~~~-~~~e~~alGaA~~A 457 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLG---------------------------------SPVVRP-ADIETTALGAAYAA 457 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcC---------------------------------CceEec-CccccHHHHHHHHH
Confidence 47889999999999999999999997 345433 45578899999999
Q ss_pred HHHhC
Q psy4399 301 AILHG 305 (379)
Q Consensus 301 ~~l~~ 305 (379)
+.-.|
T Consensus 458 ~~~~G 462 (512)
T PLN02295 458 GLAVG 462 (512)
T ss_pred HhhcC
Confidence 87776
No 88
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.16 E-value=0.12 Score=51.95 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCC
Q psy4399 33 QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 112 (379)
Q Consensus 33 ~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~l 112 (379)
....+.++-+..|++.-.+=.|-+|-..+.+.....+ ..+..+|+|+|||+|.+++++ ++.+... ...++
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~-----~~~~~lviDIGGGStEl~~~~--~~~~~~~---~Sl~l 162 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTG-----GADQRLVVDIGGASTELVTGT--GAQATSL---FSLSM 162 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccC-----CCCCEEEEEecCCeeeEEEec--CCceeee---eEEec
Confidence 3445556666779987444444444444344444432 223589999999999999987 3322211 12578
Q ss_pred CHHHHHHHH
Q psy4399 113 GGEDFDNRM 121 (379)
Q Consensus 113 GG~~id~~l 121 (379)
|.-.+.+.+
T Consensus 163 G~vrl~e~f 171 (496)
T PRK11031 163 GCVTWLERY 171 (496)
T ss_pred cchHHHHHh
Confidence 877665544
No 89
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.04 E-value=0.061 Score=54.37 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=42.4
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++...+.+.+.++ .++....+ .++.++|||+.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg---------------------------------~pV~~~~~-~e~~alGaA~lA 454 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTG---------------------------------LPVKVPVV-KEATALGCAIAA 454 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcC---------------------------------CeeEEecc-cCchHHHHHHHH
Confidence 47899999999999999999999997 35554444 457899999999
Q ss_pred HHHhC
Q psy4399 301 AILHG 305 (379)
Q Consensus 301 ~~l~~ 305 (379)
+.-.|
T Consensus 455 ~~~~G 459 (520)
T PRK10939 455 GVGAG 459 (520)
T ss_pred HHHhC
Confidence 87776
No 90
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=94.79 E-value=0.0073 Score=46.70 Aligned_cols=40 Identities=43% Similarity=0.728 Sum_probs=33.9
Q ss_pred CcccccccccccccccccccccchhhhhhhhcCceeeeecCC
Q psy4399 332 SYGVDIDTIMNNLAIKIPLQQVKNTVEELINEGHIYTTIDDN 373 (379)
Q Consensus 332 ~~~~~~~~i~~~~~~~ip~~~~~~~~~~~~~~~~~~~t~~~~ 373 (379)
.-|+.++.|.... .+|..+++.++++++++|++|+|+||+
T Consensus 63 ~~Gv~v~~I~~~l--~~~~~~v~~al~~L~~eG~IYsTiDd~ 102 (102)
T PF08784_consen 63 EEGVHVDEIAQQL--GMSENEVRKALDFLSNEGHIYSTIDDD 102 (102)
T ss_dssp TTTEEHHHHHHHS--TS-HHHHHHHHHHHHHTTSEEESSSTT
T ss_pred CCcccHHHHHHHh--CcCHHHHHHHHHHHHhCCeEecccCCC
Confidence 4588888777665 788889999999999999999999996
No 91
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.73 E-value=0.094 Score=52.30 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=41.5
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++...+.+.+.++. ++... +.++.++|||+.|
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~---------------------------------pV~~~--~~ea~alGaa~~a 419 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGI---------------------------------RVIAG--PVEASTLGNIGIQ 419 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCC---------------------------------CeeeC--ChhHHHHHHHHHH
Confidence 368899999999999999999999973 45333 2478899999999
Q ss_pred HHHhC
Q psy4399 301 AILHG 305 (379)
Q Consensus 301 ~~l~~ 305 (379)
+.-.|
T Consensus 420 ~~a~G 424 (471)
T PRK10640 420 LMTLD 424 (471)
T ss_pred HHHcC
Confidence 87776
No 92
>PRK10854 exopolyphosphatase; Provisional
Probab=94.63 E-value=0.14 Score=51.55 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHh-ccccccCCCCCCCCceEEE
Q psy4399 3 LTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAY-GLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 3 L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~-~~~~~~~~~~~~~~~~vlV 81 (379)
|+..++.++.+ +..-..+|-|--.-=-.+....+.++-+..|++. .+++..+=|.+.| +.....+ .....+|
T Consensus 69 L~~F~~~~~~~-~v~~v~~vATsAlReA~N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~-----~~~~~lv 141 (513)
T PRK10854 69 LSLFAERLQGF-SPANVCIVGTHTLRQALNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP-----EKGRKLV 141 (513)
T ss_pred HHHHHHHHHhC-CCCeEEEEehHHHHcCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccC-----CCCCeEE
Confidence 44555555544 3322233333222112233444555666679877 5555444444444 4444332 2246899
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHH
Q psy4399 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120 (379)
Q Consensus 82 vD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~ 120 (379)
+|+|||+|.+++++ ++......+ .++|.-.+.+.
T Consensus 142 vDIGGGStEl~~~~--~~~~~~~~S---~~lG~vrl~e~ 175 (513)
T PRK10854 142 IDIGGGSTELVIGE--NFEPILVES---RRMGCVSFAQL 175 (513)
T ss_pred EEeCCCeEEEEEec--CCCeeEeEE---EecceeeHHhh
Confidence 99999999999987 332222211 36666655543
No 93
>KOG2531|consensus
Probab=94.56 E-value=0.11 Score=50.00 Aligned_cols=54 Identities=22% Similarity=0.398 Sum_probs=43.3
Q ss_pred HhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHH
Q psy4399 214 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVA 293 (379)
Q Consensus 214 ~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA 293 (379)
..+......+.|+.|||.|+...|-+.|.+.|+. ++. ..+-.+++|
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~a---------------------------------pVy-~~~~~~sa~ 480 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGA---------------------------------PVY-TIEGPNSAA 480 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCC---------------------------------CeE-eecCCchhh
Confidence 3445555678999999999999999999999974 332 237778899
Q ss_pred hhHHHHHH
Q psy4399 294 YGAAVQAA 301 (379)
Q Consensus 294 ~Gaa~~a~ 301 (379)
+|+|++|+
T Consensus 481 lG~A~ra~ 488 (545)
T KOG2531|consen 481 LGGAYRAA 488 (545)
T ss_pred HHHHHHHH
Confidence 99999975
No 94
>PLN02666 5-oxoprolinase
Probab=94.53 E-value=1.4 Score=49.10 Aligned_cols=41 Identities=29% Similarity=0.535 Sum_probs=26.4
Q ss_pred eeccchHHHHHHhcccc-ccCCCCCCCCceEEEEEcCCceeEEEEEE
Q psy4399 50 RIINEPTAAAIAYGLDK-KVGSAAGSGERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 50 ~lv~Ep~Aaa~~~~~~~-~~~~~~~~~~~~vlVvD~GggT~disv~~ 95 (379)
.+.+=|.|..+++.... ... ...+++++|+||.|||++++.
T Consensus 291 ti~SGPAagv~Gaa~l~~~~~-----g~~~~I~~DmGGTTtDv~li~ 332 (1275)
T PLN02666 291 AILSGPAGGVVGYAQTTFGLE-----TEKPVIGFDMGGTSTDVSRYD 332 (1275)
T ss_pred eEEECHHHHHHHHHHHhcccc-----CCCCEEEEecCCceeeeEEEc
Confidence 34555666655533221 110 235799999999999999984
No 95
>KOG0681|consensus
Probab=94.36 E-value=0.056 Score=52.90 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCCC----CcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCc
Q psy4399 3 LTKMKETAEAYLGKTV----SNAVITVPAYFNDSQRQATKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGER 77 (379)
Q Consensus 3 L~~l~~~a~~~~~~~~----~~~vitvPa~~~~~~r~~l~~-a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~ 77 (379)
+.++.+.+=..+|..- .-+++|-+..-....|+.|-+ ..+..|++.+.+=-+..=+.+ ++.. .. ...
T Consensus 97 ~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~---hN~~-~~----~~~ 168 (645)
T KOG0681|consen 97 MEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFY---HNYG-KS----SNK 168 (645)
T ss_pred HHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHh---hccC-cc----cCc
Confidence 4555566655666433 357888888777778888877 566679887665444332222 1111 10 233
Q ss_pred eEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q psy4399 78 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 125 (379)
Q Consensus 78 ~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l 125 (379)
.-+|+++|..+|.+-.+- +|......+.. .++||.....-|.++|
T Consensus 169 ~~liis~g~~~T~vipvl--dG~~il~~~kR-iN~GG~qa~dYL~~Lm 213 (645)
T KOG0681|consen 169 SGLIISMGHSATHVIPVL--DGRLILKDVKR-INWGGYQAGDYLSRLM 213 (645)
T ss_pred ceEEEecCCCcceeEEEe--cCchhhhccee-eccCcchHHHHHHHHH
Confidence 679999999999987665 44322222222 6778777665554443
No 96
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.27 E-value=0.21 Score=50.19 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=24.7
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
.++.|.++||+|+++...+++.+.++.
T Consensus 401 ~~~~i~~~GGgars~~w~Qi~Ad~~g~ 427 (502)
T COG1070 401 PPSRVRVVGGGARSPLWLQILADALGL 427 (502)
T ss_pred CccEEEEECCcccCHHHHHHHHHHcCC
Confidence 367999999999999999999999973
No 97
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=94.13 E-value=2.5 Score=39.55 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=42.5
Q ss_pred CCCcEEEEcCCCCCHH------------HHHHHHHHHH-HcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEE
Q psy4399 17 TVSNAVITVPAYFNDS------------QRQATKDSGT-IAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFD 83 (379)
Q Consensus 17 ~~~~~vitvPa~~~~~------------~r~~l~~a~~-~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD 83 (379)
++..+.|++|...+.. +...+++..+ ..|++ +.+.++..|+|++-....... ..++++++.
T Consensus 57 ~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~-----~~~~~~~v~ 130 (318)
T TIGR00744 57 EIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAALGEYKKGAGK-----GARDVICIT 130 (318)
T ss_pred ceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHHHHHHHhcccC-----CCCcEEEEE
Confidence 4567788888644321 1112444333 33765 689999999988754332211 246788888
Q ss_pred cCCceeEEEEEE
Q psy4399 84 LGGGTFDVSILT 95 (379)
Q Consensus 84 ~GggT~disv~~ 95 (379)
+|.|- -.+++.
T Consensus 131 igtGi-G~giv~ 141 (318)
T TIGR00744 131 LGTGL-GGGIII 141 (318)
T ss_pred eCCcc-EEEEEE
Confidence 88775 444443
No 98
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=93.51 E-value=0.91 Score=40.82 Aligned_cols=94 Identities=20% Similarity=0.293 Sum_probs=60.9
Q ss_pred CCCCCcEEE--EcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEE
Q psy4399 15 GKTVSNAVI--TVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVS 92 (379)
Q Consensus 15 ~~~~~~~vi--tvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~dis 92 (379)
+..+.+++. .+|.+|+. -+++++.+..+|.+. .+++-..||.+..+.+.... ....++++|+|=|+|-..
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~-----~~~~~~~vniGN~HTlaa 182 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVS-----SREGIIVVNIGNGHTLAA 182 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhh-----ccCCeEEEEeCCccEEEE
Confidence 566778888 88888662 334455555555555 66677777777776665432 467899999999999888
Q ss_pred EEEEeCCeEEEEEecCCCCCCHHHHH
Q psy4399 93 ILTIEDGIFEVKSTAGDTHLGGEDFD 118 (379)
Q Consensus 93 v~~~~~~~~~~~~~~~~~~lGG~~id 118 (379)
+++ ++.+.-+...-...+-...+.
T Consensus 183 ~v~--~~rI~GvfEHHT~~l~~~kL~ 206 (254)
T PF08735_consen 183 LVK--DGRIYGVFEHHTGMLTPEKLE 206 (254)
T ss_pred EEe--CCEEEEEEecccCCCCHHHHH
Confidence 884 554444433333455555443
No 99
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=93.48 E-value=0.93 Score=42.62 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=31.7
Q ss_pred HHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 199 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 199 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
..++.+...|...+.. ..+.+.|+|+|-.+++|-+++.+++.|+.
T Consensus 242 a~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~ 286 (343)
T PF07318_consen 242 AMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLED 286 (343)
T ss_pred HHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHh
Confidence 3444444455444433 23568899999999999999999988864
No 100
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=93.26 E-value=0.38 Score=44.90 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhc-cccccCCCCCCCCceEEE
Q psy4399 3 LTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG-LDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 3 L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~-~~~~~~~~~~~~~~~vlV 81 (379)
|+..++.++.+ +.....++-|--.-.-.+....+.+.-+..|++. ++++..+-|.+.|. .....+ ....++
T Consensus 58 l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~------~~~~~v 129 (300)
T TIGR03706 58 LKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLP------IADGLV 129 (300)
T ss_pred HHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCC------CCCcEE
Confidence 44445555433 3332233333322222233334444555679876 57776666666553 222221 122499
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHH
Q psy4399 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120 (379)
Q Consensus 82 vD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~ 120 (379)
+|+|||+|.++.+. ++.+.. ....++|.-.+.+.
T Consensus 130 ~DiGGGSte~~~~~--~~~~~~---~~Sl~lG~vrl~e~ 163 (300)
T TIGR03706 130 VDIGGGSTELILGK--DFEPGE---GVSLPLGCVRLTEQ 163 (300)
T ss_pred EEecCCeEEEEEec--CCCEeE---EEEEccceEEhHHh
Confidence 99999999999886 332211 11257777655544
No 101
>PRK03011 butyrate kinase; Provisional
Probab=92.33 E-value=3.5 Score=39.50 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=40.5
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
+++.|+|+||.+..+.+++.|++.+... .| ..+....+-.+|.+.||+
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~------------------~p-----------v~i~p~~~e~~A~a~GA~--- 342 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFI------------------AP-----------VIVYPGEDEMEALAEGAL--- 342 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhh------------------CC-----------eEEEeCCCHHHHHHHHHH---
Confidence 5799999999999999999999988531 01 345556677889999987
Q ss_pred HHHhC
Q psy4399 301 AILHG 305 (379)
Q Consensus 301 ~~l~~ 305 (379)
..|.|
T Consensus 343 rvl~g 347 (358)
T PRK03011 343 RVLRG 347 (358)
T ss_pred HHHcC
Confidence 45666
No 102
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=92.05 E-value=2.1 Score=40.61 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=32.6
Q ss_pred hchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCccccc
Q psy4399 202 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 252 (379)
Q Consensus 202 ~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~ 252 (379)
+.+.+.+.++++.. .+..++++||-+...++|+++++....++.++
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~ 294 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAKERGGKL 294 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 34444455555443 36789999999999999999999886533333
No 103
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=91.90 E-value=1.7 Score=39.55 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=25.4
Q ss_pred CcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 218 DKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 218 ~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
-+..+|.|+|+||.++...+-++|++...
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~ 321 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVS 321 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHh
Confidence 34568999999999999999999998774
No 104
>PRK09604 UGMP family protein; Validated
Probab=91.38 E-value=4.5 Score=38.36 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=24.2
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
+++.|+|.||.++...+++.|.+.+..
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~ 280 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKK 280 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998854
No 105
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.83 E-value=2.3 Score=38.24 Aligned_cols=85 Identities=15% Similarity=0.279 Sum_probs=54.0
Q ss_pred cCCCCCHHHHHHHHHHHHHc---CCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeE
Q psy4399 25 VPAYFNDSQRQATKDSGTIA---GLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIF 101 (379)
Q Consensus 25 vPa~~~~~~r~~l~~a~~~A---Gl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~ 101 (379)
+|-+|+ +|+.|+..| +-. ..+++.-.||+...+.+.. ....+|+|+|-|++..+++. ++.+
T Consensus 186 iPe~Ft-----RMraaa~sal~~~t~-av~mDskfaav~gal~dpa--------a~palvVd~GngHttaalvd--edRI 249 (342)
T COG4012 186 IPESFT-----RMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDPA--------ADPALVVDYGNGHTTAALVD--EDRI 249 (342)
T ss_pred CchhHH-----HHHHHHHHHHhcCce-EEEEcchhHhhhhcccCcc--------cCceEEEEccCCceEEEEec--CCeE
Confidence 566665 566655554 333 4666777777777766643 45889999999999998886 4444
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHH
Q psy4399 102 EVKSTAGDTHLGGEDFDNRMVNHF 125 (379)
Q Consensus 102 ~~~~~~~~~~lGG~~id~~l~~~l 125 (379)
.-+...-...+.-+.+...|.++.
T Consensus 250 ~gv~EHHT~~Lspekled~I~rf~ 273 (342)
T COG4012 250 VGVYEHHTIRLSPEKLEDQIIRFV 273 (342)
T ss_pred EEEeecccccCCHHHHHHHHHHHH
Confidence 444444445666655554444443
No 106
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=90.77 E-value=1.1 Score=44.04 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=47.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHcCCceeee---ccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEE
Q psy4399 20 NAVITVPAYFNDSQRQATKDSGTIAGLNVLRI---INEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 20 ~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~l---v~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~ 96 (379)
.+.||==+--.+++|..+...+..||==++.- -.|+.-|+...+...... .....|+=+|+||||+.+++++.
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~----~~~~~V~NiDIGGGTtN~avf~~ 162 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSK----EHHTVVANIDIGGGTTNIAVFDN 162 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhh----hhCCeEEEEEeCCCceeEEEEEC
Confidence 36677666677888888888888887312111 135555554443332211 14577888999999999999983
No 107
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.46 E-value=1.5 Score=43.66 Aligned_cols=85 Identities=20% Similarity=0.209 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCCCC---HHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 5 KMKETAEAYLGKTVSNAVITVPAYFN---DSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 5 ~l~~~a~~~~~~~~~~~vitvPa~~~---~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
-|+..++..-+..+.++ ..|-+... .+.-+.+..+-+..|++.-.+=-|-+|-..+++.....+ .....+|
T Consensus 60 aL~~f~e~~~~~~~~~v-~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~-----~~~~~lv 133 (492)
T COG0248 60 ALKRFAELLDGFGAEEV-RVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLP-----RKGDGLV 133 (492)
T ss_pred HHHHHHHHHhhCCCCEE-EEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCC-----CCCCEEE
Confidence 34555555545555552 22222211 222344666777779887555556666555555554443 2567899
Q ss_pred EEcCCceeEEEEEE
Q psy4399 82 FDLGGGTFDVSILT 95 (379)
Q Consensus 82 vD~GggT~disv~~ 95 (379)
+|+|||+|.+++..
T Consensus 134 ~DIGGGStEl~~g~ 147 (492)
T COG0248 134 IDIGGGSTELVLGD 147 (492)
T ss_pred EEecCCeEEEEEec
Confidence 99999999999987
No 108
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=90.20 E-value=0.92 Score=43.39 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=33.4
Q ss_pred HHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 195 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 195 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
+++..+.+-+...|.+.++..... ++.|++.||+++.+.+.+.|++.++.
T Consensus 261 D~~aTlt~~TA~sI~~~i~~~~~~---~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 261 DILATLTEFTAQSIADAIRRFPPQ---PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT----EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC---CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 344444444555555666654332 68999999999999999999999975
No 109
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.79 E-value=1 Score=46.63 Aligned_cols=41 Identities=24% Similarity=0.507 Sum_probs=27.8
Q ss_pred eeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEE
Q psy4399 49 LRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 49 ~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~ 95 (379)
..+.+=|.|..++...-.... .+ +++++||||.|||++++.
T Consensus 256 ~tI~SGPAagvvGAa~ltg~~-----~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGLK-----AG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeEeeccHHHHHHHHHhcccc-----cC-CEEEEEcCCcceeeeeee
Confidence 345666777665543331211 23 599999999999999998
No 110
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=88.78 E-value=2.5 Score=39.01 Aligned_cols=59 Identities=24% Similarity=0.381 Sum_probs=42.2
Q ss_pred cCEEEEEcC--CCChH-HHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHH
Q psy4399 222 IHDIVLVGG--STRIP-KVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAV 298 (379)
Q Consensus 222 i~~VvLvGG--~sr~p-~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~ 298 (379)
...|+|.|- +++.| .+++.|++.|.. ++.. .+. +..|.|+|+
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~---------------------------------~V~~-L~~-ksAA~G~Ai 307 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSC---------------------------------KVLV-LDS-ESAAIGLAL 307 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCC---------------------------------CeEE-ecc-hhhhhhHHH
Confidence 348999988 99999 999999999963 1111 122 889999999
Q ss_pred HHHHHhCCCchhcccceeEee
Q psy4399 299 QAAILHGDKSEEVQDLLLLDV 319 (379)
Q Consensus 299 ~a~~l~~~~~~~~~~~~~~~~ 319 (379)
.|.-+.+.. ++++-++|
T Consensus 308 IA~dI~gGk----~~iLGi~v 324 (326)
T TIGR03281 308 IAEDIFSGK----REILGIDV 324 (326)
T ss_pred HHHHHhCCc----ceEeeeee
Confidence 998776532 44544443
No 111
>PRK14878 UGMP family protein; Provisional
Probab=87.90 E-value=24 Score=33.24 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.5
Q ss_pred cCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 222 IHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 222 i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
+..|+|+||.+...++++.+.+.+..
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~ 267 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAED 267 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999998753
No 112
>PLN02920 pantothenate kinase 1
Probab=86.81 E-value=18 Score=34.83 Aligned_cols=55 Identities=15% Similarity=-0.002 Sum_probs=39.0
Q ss_pred CCcCEEEEEcCCCChH-HHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHH
Q psy4399 220 AQIHDIVLVGGSTRIP-KVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAV 298 (379)
Q Consensus 220 ~~i~~VvLvGG~sr~p-~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~ 298 (379)
.+++.|+++|.+.|.+ ...+.|.-.+. .|+.. +.+.....+....-|+||++
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~---------------fwS~g------------~~ka~FLrHeGYlGAlGAfl 348 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVH---------------FWSKG------------EAKAMFLRHEGFLGALGAFM 348 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHH---------------HhccC------------ceeEEEecCcchhHHHHHHH
Confidence 4688999999999998 77776654432 23321 14566677899999999997
Q ss_pred HHH
Q psy4399 299 QAA 301 (379)
Q Consensus 299 ~a~ 301 (379)
...
T Consensus 349 ~~~ 351 (398)
T PLN02920 349 SYE 351 (398)
T ss_pred hcc
Confidence 543
No 113
>PRK00976 hypothetical protein; Provisional
Probab=85.83 E-value=5.4 Score=37.44 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=37.9
Q ss_pred CcCEEEEEcCCCChH--HHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHH
Q psy4399 221 QIHDIVLVGGSTRIP--KVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAV 298 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p--~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~ 298 (379)
+++.|+|-||.|+.+ .+.+.+++.+.. . .......|-++|||+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~---------------------------------~--~a~LG~dAGaiGAA~ 307 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDK---------------------------------K--VLVLGKESAAIGLAL 307 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcc---------------------------------c--ccccCCchHHHHHHH
Confidence 368899999999998 788888888742 1 122345899999999
Q ss_pred HHHHHhC
Q psy4399 299 QAAILHG 305 (379)
Q Consensus 299 ~a~~l~~ 305 (379)
.|.-+.+
T Consensus 308 iA~~i~~ 314 (326)
T PRK00976 308 IARDIFN 314 (326)
T ss_pred HHHHHhC
Confidence 9877644
No 114
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=85.79 E-value=3.7 Score=39.34 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhchh-hHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccc
Q psy4399 190 RARFEELNADLFRGTM-EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQP 268 (379)
Q Consensus 190 r~~~~~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 268 (379)
+.++...++..+++++ ..++..+++.+.. +.++|.||.+..-..-..|.+..+-
T Consensus 135 ~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~~----~~L~laGGvaLN~~~N~~l~~~~~~--------------------- 189 (360)
T PF02543_consen 135 HADLAASAQKVLEEIVLHLVRHLLERTGID----NNLCLAGGVALNCKANGRLLEEPGF--------------------- 189 (360)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHT------SEEEEESGGGG-HHHHHHHHTSTT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CeEEEechHHHHHHHHHHHHhcCCC---------------------
Confidence 6677777777776654 5555666666633 3499999999998888888876332
Q ss_pred hhhhhhhcccCccccC-CCChhhHHHhhHHHHHHHHhC
Q psy4399 269 VQKLLQDFFNGKELNK-SINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 269 ~~~~~~~~~~~~~~~~-~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.++.. +.--|..+|+|||+++....+
T Consensus 190 -----------~~v~V~Pa~gD~G~aiGaA~~~~~~~~ 216 (360)
T PF02543_consen 190 -----------DNVFVPPAAGDAGLAIGAALYAWHELG 216 (360)
T ss_dssp -----------SEEE--TTTSGGGHHHHHHHHHHHHTT
T ss_pred -----------CeEEECCCCCCcchHHHHHHHHHHHhc
Confidence 22332 334589999999999986554
No 115
>PF13941 MutL: MutL protein
Probab=84.82 E-value=5.7 Score=39.20 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=25.3
Q ss_pred cCCcCCcCEEEEEcC-CCChHHHHHHHHHHcCC
Q psy4399 216 KMDKAQIHDIVLVGG-STRIPKVQKLLQDFFNG 247 (379)
Q Consensus 216 ~~~~~~i~~VvLvGG-~sr~p~v~~~l~~~f~~ 247 (379)
+.+...++.|+-+|| .++.|.-.+.++..+..
T Consensus 380 GkDL~~v~~iIgtGGvL~h~~~~~~il~~~~~~ 412 (457)
T PF13941_consen 380 GKDLTRVKYIIGTGGVLTHSPNPEEILKAALDA 412 (457)
T ss_pred CcccccCCEEEEeCccccCCCCHHHHHHHHhhc
Confidence 333446899999999 78899988888888764
No 116
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=84.12 E-value=4 Score=27.91 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCce
Q psy4399 6 MKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNV 48 (379)
Q Consensus 6 l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~ 48 (379)
+.+..+++.... .-.++.|+.++..+|..+.+.|...||..
T Consensus 4 i~~~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 4 INKALEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 345566666655 78899999999999999999999999865
No 117
>KOG3108|consensus
Probab=83.27 E-value=0.5 Score=42.87 Aligned_cols=45 Identities=38% Similarity=0.770 Sum_probs=31.0
Q ss_pred ccccccccccccccccccc-ccchhhhhhhhcCceeeeecCCccccCC
Q psy4399 333 YGVDIDTIMNNLAIKIPLQ-QVKNTVEELINEGHIYTTIDDNHYQTVD 379 (379)
Q Consensus 333 ~~~~~~~i~~~~~~~ip~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 379 (379)
-|+.+..|-.-. .+|.. ..++.+.++..+|++|+|.|++||++++
T Consensus 220 eGv~~~~i~~~l--~~~~~~~~~~~~~~l~~eG~iy~TvD~~hFks~~ 265 (265)
T KOG3108|consen 220 EGVHIKEIAAQL--REPSVSELREAVDFLLNEGHIYSTVDEEHFKSTN 265 (265)
T ss_pred ccccHHHHHHHh--cccchhhHHHHHHHHhcCCeEEEeechhheeecC
Confidence 455555443222 34433 4566666799999999999999999874
No 118
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=83.05 E-value=2.2 Score=44.67 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=24.2
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
.++.|+|+||.++...+++.+.+.++.
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~ 684 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKG 684 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999998864
No 119
>PRK09557 fructokinase; Reviewed
Probab=82.51 E-value=41 Score=31.13 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=34.6
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
+++.|+|-||.++.+.+.+.+++.+........ ...++..+...+.+.++||++..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~------------------------~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGE------------------------CETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccc------------------------cCCeEEEcccCCchhhhhhhHhh
Confidence 357888888888887777777776643100000 00234445556778899999753
No 120
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=82.00 E-value=42 Score=30.87 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=36.8
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
+++.|+|.|+.+..+.+.+.+++.+.... ... ..++..+...+.+.+.|||..+
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~--~~~------------------------~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEP--AIY------------------------HVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcc--ccc------------------------CCeEEECccCCchhhhhHHHHh
Confidence 35789998888877777788887775310 000 0234556667888999999875
Q ss_pred H
Q psy4399 301 A 301 (379)
Q Consensus 301 ~ 301 (379)
-
T Consensus 287 ~ 287 (291)
T PRK05082 287 Q 287 (291)
T ss_pred c
Confidence 3
No 121
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=81.11 E-value=15 Score=33.49 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=31.4
Q ss_pred ceEEEEEcCCceeEEEEEEEeCCeEEEEEecC----CCCCCHHHHHHHHHHHHH
Q psy4399 77 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAG----DTHLGGEDFDNRMVNHFV 126 (379)
Q Consensus 77 ~~vlVvD~GggT~disv~~~~~~~~~~~~~~~----~~~lGG~~id~~l~~~l~ 126 (379)
-+++.+.+|-+.|-+..++ +|.+ +-+.+| ...+||-.+|-.++-.+.
T Consensus 163 ~nfIavE~G~aytaavaV~--nGkI-VDGmgGttgf~gylg~g~MD~ElAYaLa 213 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVK--NGKI-VDGMGGTTGFTGYLGGGAMDGELAYALA 213 (374)
T ss_pred hhhHHHhhhccceeEEEEE--CCEE-EeccCCccCcccccccccccHHHHHHHH
Confidence 5568899999988877766 4432 222223 247889889988875554
No 122
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=80.51 E-value=44 Score=31.17 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=26.5
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccc
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 253 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~ 253 (379)
.++.|+|+||.+....+++.+.+.+...+.++.
T Consensus 258 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~ 290 (305)
T TIGR00329 258 GPKELVLVGGVSANKRLREMLETLCQELNVEFY 290 (305)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 467899999999999999999998854333333
No 123
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=80.06 E-value=1.9 Score=40.51 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=17.4
Q ss_pred ceEEEEEcCCceeEEEEEE
Q psy4399 77 RNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 77 ~~vlVvD~GggT~disv~~ 95 (379)
.+++++||||.|||++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 4589999999999999997
No 124
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=79.53 E-value=6.7 Score=38.57 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=42.7
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.+-+=||.++..++.+.....++. ++..+ .-.|+-|+|||+.|
T Consensus 402 ~~~~LrvDGG~s~n~~lmQfqADilg~---------------------------------~V~Rp-~~~EtTAlGaA~lA 447 (499)
T COG0554 402 KLTRLRVDGGASRNNFLMQFQADILGV---------------------------------PVERP-VVLETTALGAAYLA 447 (499)
T ss_pred CceeEEEcCccccchhHHHHHHHHhCC---------------------------------eeecc-ccchhhHHHHHHHH
Confidence 478899999999999999999999973 44433 34577899999999
Q ss_pred HHHhCC
Q psy4399 301 AILHGD 306 (379)
Q Consensus 301 ~~l~~~ 306 (379)
..-.|-
T Consensus 448 Gla~G~ 453 (499)
T COG0554 448 GLAVGF 453 (499)
T ss_pred hhhhCc
Confidence 988873
No 125
>KOG0681|consensus
Probab=78.12 E-value=22 Score=35.52 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=43.8
Q ss_pred cCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 222 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 222 i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
+.+|+|+||+|.+|++.++|++-+-. . .|+++. ..+....||-...=+||+-+|+
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~--m---------rP~gS~--------------i~V~rasdP~LDAW~GA~~~a~ 613 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTS--M---------RPVGSS--------------INVVRASDPVLDAWRGASAWAA 613 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhhe--e---------cccCCc--------------eEEEecCCcchhhhhhhHHhhc
Confidence 78899999999999999999987743 1 112211 4667788999999999998887
Q ss_pred H
Q psy4399 302 I 302 (379)
Q Consensus 302 ~ 302 (379)
.
T Consensus 614 n 614 (645)
T KOG0681|consen 614 N 614 (645)
T ss_pred C
Confidence 4
No 126
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=77.78 E-value=10 Score=36.92 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=33.7
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
-+-+++.+...+.+.+.+++..+.+|..++++|-.+....+...=-+.++.
T Consensus 59 ~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~~ 109 (412)
T PF14574_consen 59 QRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLGR 109 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhcc
Confidence 344556677788888899999999999999999887776665544444443
No 127
>PRK07058 acetate kinase; Provisional
Probab=76.26 E-value=17 Score=35.12 Aligned_cols=47 Identities=6% Similarity=0.078 Sum_probs=34.4
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~ 246 (379)
.++-++.++.+.|-...... ..+|.|+++||-+ ..+.+++.|.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34445555555555555443 2589999999999 99999999999875
No 128
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=75.90 E-value=11 Score=25.84 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCce
Q psy4399 6 MKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNV 48 (379)
Q Consensus 6 l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~ 48 (379)
+.+..+++.... ..-.++.|+.++..+|..+.+.|+..||..
T Consensus 4 ~~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 4 YRQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 455666666544 467899999999999999999999999965
No 129
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=75.52 E-value=16 Score=35.03 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=31.0
Q ss_pred HhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 200 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 200 ~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
+.+-+...|.+.+.... ...+.|++.||+++.|++.++|++.++
T Consensus 268 lt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~ 311 (365)
T PRK09585 268 LTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP 311 (365)
T ss_pred HHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC
Confidence 33344445555554432 224689999999999999999999985
No 130
>KOG2708|consensus
Probab=74.60 E-value=20 Score=31.76 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=30.4
Q ss_pred HhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 200 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 200 ~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
.+.-+.+..++++...+ -+.|++|||....--+|+++.....+
T Consensus 238 vFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~e 280 (336)
T KOG2708|consen 238 VFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSE 280 (336)
T ss_pred HHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHh
Confidence 33344444445554433 36799999999999999999988865
No 131
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=74.10 E-value=10 Score=38.50 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=23.2
Q ss_pred cCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 222 IHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 222 i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
+..|+|+||.+...++++.+.+.+..
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~ 271 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEE 271 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999987754
No 132
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=71.85 E-value=20 Score=24.57 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCce
Q psy4399 5 KMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNV 48 (379)
Q Consensus 5 ~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~ 48 (379)
++.+..+.++..+ ....+..|+.++..+|..+.+.|+..||..
T Consensus 3 ~~~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 3 HLKAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred hHHHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 4566666676654 246789999999999999999999999865
No 133
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=70.93 E-value=11 Score=35.45 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=24.1
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
.++.|+|.||.++...+++.|.+.+..
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~ 285 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEK 285 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998854
No 134
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=70.00 E-value=2.3 Score=36.64 Aligned_cols=25 Identities=36% Similarity=0.838 Sum_probs=20.1
Q ss_pred chhhhhhhhcCceeeeecCCccccC
Q psy4399 354 KNTVEELINEGHIYTTIDDNHYQTV 378 (379)
Q Consensus 354 ~~~~~~~~~~~~~~~t~~~~~~~~~ 378 (379)
+.+...+.++|++|.|.|+|+|+++
T Consensus 233 ~v~~d~L~~~g~iYpTvD~n~fkt~ 257 (258)
T COG5235 233 RVNIDVLLRDGHIYPTVDGNEFKTT 257 (258)
T ss_pred eeeeeeehhCceEEeeecCcceeec
Confidence 3334557799999999999999974
No 135
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=66.69 E-value=1.2e+02 Score=28.86 Aligned_cols=53 Identities=23% Similarity=0.189 Sum_probs=34.8
Q ss_pred CcCEEEEEcCCCCh-HHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHH
Q psy4399 221 QIHDIVLVGGSTRI-PKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299 (379)
Q Consensus 221 ~i~~VvLvGG~sr~-p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~ 299 (379)
.++.|+++|..-+. |...+.+...+. .|+.. ..+.....+...+-|+||.+.
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~---------------~~s~~------------~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAIN---------------FWSKG------------ELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHH---------------HHTTT------------S-EEEEETTTTSHHHHHHHHT
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHH---------------HhccC------------CceEEEecCCchhHHHHHHHh
Confidence 57899999998875 677888883331 12211 145556678999999999875
Q ss_pred H
Q psy4399 300 A 300 (379)
Q Consensus 300 a 300 (379)
.
T Consensus 340 ~ 340 (341)
T PF03630_consen 340 H 340 (341)
T ss_dssp H
T ss_pred c
Confidence 3
No 136
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=65.12 E-value=22 Score=24.05 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCce
Q psy4399 4 TKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNV 48 (379)
Q Consensus 4 ~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~ 48 (379)
+.+++..+.++... .-.++.|+ .+..+|..+.+.|...|+..
T Consensus 2 ~~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 2 EDIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred hHHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 55677777777666 45679999 89999999999999999854
No 137
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=64.10 E-value=13 Score=36.37 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=40.9
Q ss_pred ccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHH
Q psy4399 184 ARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 242 (379)
Q Consensus 184 ~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~ 242 (379)
..+.+|..+++++ +-.-..+..-++-.+++++++..+++.|+|.||++.-=-+.+.+.
T Consensus 291 ~~i~itq~DIr~~-qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 291 DDIYITQKDIREF-QLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp S-EEEEHHHHHHH-HHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCEEEeHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 4556669999876 334456677788889999999999999999999998777777666
No 138
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=62.38 E-value=29 Score=32.17 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=35.7
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
+++.|+|-||.+..+.+.+.+++.+........ . ..++..+...+.+.++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~-------------~-----------~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVA-------------R-----------VPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccc-------------c-----------CceEEEcccCchHHHHhHHHHh
Confidence 457888888877777777777777643110000 0 0234556667889999999765
No 139
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=57.23 E-value=16 Score=31.96 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCceeEEEEEEEeCC
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIEDG 99 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~~~ 99 (379)
....++++|+||.++-+..+++.+.
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~ 85 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGN 85 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESS
T ss_pred CCceEEEEeecCcEEEEEEEEEcCC
Confidence 4578999999999999999999876
No 140
>PRK13318 pantothenate kinase; Reviewed
Probab=56.06 E-value=1.6e+02 Score=26.66 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCCh
Q psy4399 191 ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 234 (379)
Q Consensus 191 ~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~ 234 (379)
+.-+.+....+......|+..+++.......--.|+++||.+..
T Consensus 184 ~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~~~vi~TGG~a~~ 227 (258)
T PRK13318 184 NTVEAMQSGIYYGYVGLVEGIVKRIKEELGKDPKVIATGGLAPL 227 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHH
Confidence 33444444555555555555555322111111369999999754
No 141
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=54.93 E-value=39 Score=23.19 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=26.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHcCCce
Q psy4399 19 SNAVITVPAYFNDSQRQATKDSGTIAGLNV 48 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~a~~~AGl~~ 48 (379)
..-.+..|+.++..+|+.+...|..-|+..
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 366778899999999999999999999865
No 142
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=54.44 E-value=74 Score=28.83 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHH
Q psy4399 190 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 242 (379)
Q Consensus 190 r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~ 242 (379)
++..+.+....+-.....|+..+++.......-..++++||.+++ +.+.+.
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~~--~~~~~~ 231 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAKL--LLDELD 231 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchHh--hhhhcc
Confidence 344555556666666666666666544222234789999998864 444443
No 143
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=54.31 E-value=49 Score=31.14 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=23.4
Q ss_pred cCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 222 IHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 222 i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
+..|+|+||.+....+++.|.+.+..
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~ 268 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAED 268 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998754
No 144
>KOG1794|consensus
Probab=53.70 E-value=35 Score=31.45 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=17.6
Q ss_pred CCCChhhHHHhhHHHHHHHHhC
Q psy4399 284 KSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 284 ~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
....|.+.-|.|||+.|+.+.+
T Consensus 298 ~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 298 ELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred EEEeecccchHHHHHHhhhhcc
Confidence 3457888999999999996654
No 145
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=51.70 E-value=9.3 Score=35.73 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=18.6
Q ss_pred CCceEEEEEcCCceeEEEEEEE
Q psy4399 75 GERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~ 96 (379)
+...|+=+|+||||+..|++..
T Consensus 143 r~t~v~NlDIGGGTtN~slFD~ 164 (473)
T COG4819 143 RLTRVLNLDIGGGTTNYSLFDA 164 (473)
T ss_pred hceEEEEEeccCCccceeeecc
Confidence 3567888999999999999874
No 146
>KOG1385|consensus
Probab=50.94 E-value=13 Score=35.80 Aligned_cols=20 Identities=40% Similarity=0.770 Sum_probs=17.9
Q ss_pred CceEEEEEcCCceeEEEEEE
Q psy4399 76 ERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 76 ~~~vlVvD~GggT~disv~~ 95 (379)
...|.|+|+|||+|.++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 56799999999999998875
No 147
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=50.69 E-value=2e+02 Score=27.60 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=25.5
Q ss_pred cCCcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 219 KAQIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 219 ~~~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
..+.+..++.||+.+.|.+.+.+...+++
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g 316 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEG 316 (371)
T ss_pred cCCCceeEeecCCccCHHHHHHHHHhcCC
Confidence 44568999999999999999999999963
No 148
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=48.23 E-value=71 Score=30.54 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=31.9
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
+++.+..++...|-......+ .+++.|++.||.+..+.+++.|++.+.
T Consensus 271 a~d~~~~~la~~Ia~l~~~l~---g~pD~IV~gGGI~e~~~l~~~I~~~l~ 318 (351)
T TIGR02707 271 ILDAMAYQIAKEIGKMAVVLK---GKVDAIVLTGGLAYSKYFVSEIIKRVS 318 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcchhhcCHHHHHHHHHHHH
Confidence 333444444444444444331 146899999999999999999999885
No 149
>PRK00292 glk glucokinase; Provisional
Probab=47.82 E-value=2.3e+02 Score=26.27 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=30.7
Q ss_pred HHcCCceeeeccchHHHHHHhccccc-----cCCCCCCCCceEEEEEcCCceeEEEEE
Q psy4399 42 TIAGLNVLRIINEPTAAAIAYGLDKK-----VGSAAGSGERNVLIFDLGGGTFDVSIL 94 (379)
Q Consensus 42 ~~AGl~~~~lv~Ep~Aaa~~~~~~~~-----~~~~~~~~~~~vlVvD~GggT~disv~ 94 (379)
+..|++.+.+.++..|+|++-..... ...........++++-+|.|-=---++
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG~giv~ 145 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLGVAGLV 145 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcceEEEEE
Confidence 34588778999999999998543100 000000012567888888764433333
No 150
>KOG2707|consensus
Probab=47.78 E-value=2.6e+02 Score=26.74 Aligned_cols=51 Identities=12% Similarity=0.315 Sum_probs=38.9
Q ss_pred HhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCccc
Q psy4399 200 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL 250 (379)
Q Consensus 200 ~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~ 250 (379)
.+..+.+..+.+++.....+..+...|+.||-++..+|+..|+.....++.
T Consensus 284 v~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~ 334 (405)
T KOG2707|consen 284 VFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAAHNC 334 (405)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHHhhCC
Confidence 344555666666666666666788999999999999999999998765443
No 151
>PLN02902 pantothenate kinase
Probab=47.56 E-value=3.4e+02 Score=29.28 Aligned_cols=36 Identities=28% Similarity=0.617 Sum_probs=24.6
Q ss_pred CceEEEEEcCCceeEEEEEEEeCC-eEEEEEecCCCCCCHHHH
Q psy4399 76 ERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDF 117 (379)
Q Consensus 76 ~~~vlVvD~GggT~disv~~~~~~-~~~~~~~~~~~~lGG~~i 117 (379)
-..++++.+|.|+ |++++.+. .++.+ .| ..+||-.|
T Consensus 213 lyPyLLVNIGSGV---SilkV~~~~~~~RV--gG-TsIGGGT~ 249 (876)
T PLN02902 213 LFPYLLVNIGSGV---SMIKVDGDGKFERV--SG-TNVGGGTY 249 (876)
T ss_pred CCceEEEEcCCce---EEEEEecCCcEEEe--cc-cccccHhH
Confidence 3568999999998 67776533 45544 33 56777765
No 152
>KOG2872|consensus
Probab=47.05 E-value=63 Score=29.78 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC
Q psy4399 189 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 232 (379)
Q Consensus 189 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s 232 (379)
+.++|++.+.|.+.+|.+.+++.+.+.++. .+-.|+..-|+.
T Consensus 221 spe~f~e~s~PYl~~I~~~Vk~rl~~~~~~--~vPmi~fakG~g 262 (359)
T KOG2872|consen 221 SPEDFEEFSLPYLRQIAEAVKKRLPELGLA--PVPMILFAKGSG 262 (359)
T ss_pred CHHHHHHhhhHHHHHHHHHHHHhhhhhcCC--CCceEEEEcCcc
Confidence 389999999999999999999999987654 466777776665
No 153
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=46.87 E-value=52 Score=32.03 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=34.4
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~ 246 (379)
+++-++.++.+.|-...... ...+|.|+++||.+ ..+.|++.|.+.+.
T Consensus 301 A~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 33444555555555554443 13589999999999 99999999999875
No 154
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=46.66 E-value=66 Score=29.23 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=18.3
Q ss_pred CCceEEEEEcCCceeEEEEEEE
Q psy4399 75 GERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~ 96 (379)
.....++||+|..|+|+--+.-
T Consensus 128 ~~dsci~VD~GSTTtDIIPi~~ 149 (330)
T COG1548 128 IKDSCILVDMGSTTTDIIPIKD 149 (330)
T ss_pred cCCceEEEecCCcccceEeecc
Confidence 3566899999999999987763
No 155
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=40.31 E-value=43 Score=32.70 Aligned_cols=29 Identities=34% Similarity=0.730 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCceeEEEEEEEe-CCeEEE
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIE-DGIFEV 103 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~-~~~~~~ 103 (379)
....++++|+||..+-++.+++. +|.+..
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 56789999999999999999997 444443
No 156
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=40.23 E-value=1.3e+02 Score=30.53 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=46.3
Q ss_pred HcCCCCCcEEEEcCCCCCHHHHHHHHHHH-HHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeE
Q psy4399 13 YLGKTVSNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFD 90 (379)
Q Consensus 13 ~~~~~~~~~vitvPa~~~~~~r~~l~~a~-~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~d 90 (379)
.+...-.+.|+++|...... +.+++ +..|++.+..-+|..|+.++.+..+. .+..++++=.|-|.+.
T Consensus 10 ~L~~~Gv~~vFG~pG~~~~~----l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~-------tg~gv~~~t~GPG~~n 77 (539)
T TIGR03393 10 RLTDIGIDHLFGVPGDYNLQ----FLDHVIDSPDICWVGCANELNAAYAADGYARC-------KGAAALLTTFGVGELS 77 (539)
T ss_pred HHHHcCCCEEEECCCCchHH----HHHHHhhCCCCcEeccCCcccHHHHhhhhhhh-------cCceEEEEecCccHHH
Confidence 33444457899999987653 33444 33589999999999999888777655 2335666677777554
No 157
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=38.08 E-value=90 Score=30.42 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=32.8
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcC
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFN 246 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~ 246 (379)
+-++.++.+.|-......+ ..+|.|+++||-+ ..+.+++.|.+.++
T Consensus 307 ~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 307 KMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3444455555554444332 1389999999999 89999999999875
No 158
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=38.03 E-value=3.9e+02 Score=25.98 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=32.2
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCCh-HHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI-PKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~-p~v~~~l~~~f~ 246 (379)
+++-++.++.+.|-....... ..+|.|+++||.+.. +.+++.+.+.+.
T Consensus 298 a~d~~~y~i~k~Ig~~~a~l~---G~vDaivfTGGige~~~~vr~~~~~~l~ 346 (388)
T PF00871_consen 298 ALDAFAYQIAKYIGAYAAVLE---GGVDAIVFTGGIGENSALVRERICRKLW 346 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---SS-SEEEEEHHHHHHTHHHHHHHHCTGG
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cCCCEEEEccccccchHHHHHHHHhhcC
Confidence 344455555555555555432 358999999999875 789999998764
No 159
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=37.58 E-value=57 Score=31.82 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHH-HHHHhcccc
Q psy4399 18 VSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTA-AAIAYGLDK 66 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~A-aa~~~~~~~ 66 (379)
+.++|++.|+.-+..---.+.-|+..+|++.+.-+-=..| ||++|++..
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTet 186 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTET 186 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SS
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCC
Confidence 4689999999876666778899999999999998887776 667888753
No 160
>PLN02377 3-ketoacyl-CoA synthase
Probab=37.50 E-value=52 Score=33.12 Aligned_cols=51 Identities=6% Similarity=0.162 Sum_probs=39.4
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEE-EcCCCChHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVL-VGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~sr~p~v~~~l~~~f~ 246 (379)
..+....-+.+.++++|+++++++.+|+.|+. +.+....|.+-.+|.+.+|
T Consensus 168 ~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 168 AREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 33344444668889999999999999999987 3334457999999999997
No 161
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=36.67 E-value=40 Score=28.95 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=17.3
Q ss_pred ChhhHHHhhHHHHHHHHhCC
Q psy4399 287 NPDEAVAYGAAVQAAILHGD 306 (379)
Q Consensus 287 ~p~~aVA~Gaa~~a~~l~~~ 306 (379)
-|-..+++|+-+.|..+.|.
T Consensus 73 ~PiLGIClG~Qlla~~~Gg~ 92 (190)
T PRK06895 73 KSILGVCLGHQTLCEFFGGE 92 (190)
T ss_pred CCEEEEcHHHHHHHHHhCCe
Confidence 47888999999999999874
No 162
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=36.33 E-value=18 Score=35.59 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=24.4
Q ss_pred HHHhcCCcCCcCEEEEEcC-CCChH--HHHHHHHH-HcC
Q psy4399 212 LRDAKMDKAQIHDIVLVGG-STRIP--KVQKLLQD-FFN 246 (379)
Q Consensus 212 l~~~~~~~~~i~~VvLvGG-~sr~p--~v~~~l~~-~f~ 246 (379)
..+.+.+...++.|+-+|| .++.| .....++. .|.
T Consensus 380 ~~q~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~~~~~ 418 (463)
T TIGR01319 380 DLQIGKDLLNVKCVIGSGGVLSHASQFDMGEILKAGEFD 418 (463)
T ss_pred ecccCCCchhCcEEEEeCcceeCCCCcCHHHHHhhhhcc
Confidence 3444555566899999999 67777 77777765 443
No 163
>PRK09698 D-allose kinase; Provisional
Probab=35.83 E-value=1e+02 Score=28.47 Aligned_cols=80 Identities=18% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCCh-HHHHHHHHHHcCCcccccccCCCccccccccccchhhh
Q psy4399 194 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI-PKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKL 272 (379)
Q Consensus 194 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~-p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (379)
..+++...+.+...+...+.-.+.. .|+|-||.++. +++.+.+.+.+...-........
T Consensus 214 ~~~~~~~~~~la~~l~~li~~ldP~-----~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------- 273 (302)
T PRK09698 214 HPFIQSLLENLARAIATSINLFDPD-----AIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEV--------------- 273 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-----EEEEcCccccCchhHHHHHHHHHHHHccCccccCC---------------
Q ss_pred hhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 273 LQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 273 ~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++..+...+.+.++|||+.+
T Consensus 274 -------~~i~~~~~~~~a~~~GAa~~~ 294 (302)
T PRK09698 274 -------VRFIYASSSDFNGAQGAAILA 294 (302)
T ss_pred -------cEEEECCcCCcccHHhHHHHH
No 164
>PLN03172 chalcone synthase family protein; Provisional
Probab=34.70 E-value=99 Score=30.05 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=40.2
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcCC
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFNG 247 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~~ 247 (379)
+...+=..+..+++|+++++.+.+|+.|+++-.+. .+|.+--.|.+.+|-
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl 150 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGL 150 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCC
Confidence 34445556788899999999999999998776554 699999999999973
No 165
>PLN02914 hexokinase
Probab=34.63 E-value=1.5e+02 Score=29.80 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCceeEEEEEEEeC
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIED 98 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~~ 98 (379)
+...++.+|+||.++-+..+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 456799999999999999999975
No 166
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=34.40 E-value=5.1e+02 Score=26.34 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHH-HHHHHHcCCcccccccCCCccccccccccc
Q psy4399 190 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ-KLLQDFFNGKELNKSINPDVTTLCWSVAQP 268 (379)
Q Consensus 190 r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~-~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 268 (379)
..++...++..+++++-.+-..+.+... .+.+.+.||.+..-..- +.+.+-+..
T Consensus 258 ~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f~--------------------- 312 (555)
T COG2192 258 AADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLFE--------------------- 312 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccCc---------------------
Confidence 5566666667777766666655554321 47899999998875555 455544331
Q ss_pred hhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 269 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.-...+--.|...|.|||++++..-+
T Consensus 313 -----------dlfV~Pa~gD~G~AvGAAl~~~~~~~ 338 (555)
T COG2192 313 -----------DLFVQPAMGDAGLAVGAALAVKRELG 338 (555)
T ss_pred -----------eeEecCCCCCcchHHHHHHHHHHHhc
Confidence 12233444588899999999866544
No 167
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=33.32 E-value=1.1e+02 Score=29.77 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=49.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHH-HHHHhccccccCCCCCC-CC-----------ceEEEEEc
Q psy4399 18 VSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTA-AAIAYGLDKKVGSAAGS-GE-----------RNVLIFDL 84 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~A-aa~~~~~~~~~~~~~~~-~~-----------~~vlVvD~ 84 (379)
+.++|++.|+.=+..--..+.-||..+|++.+..+-=..| ||++|++..-.+-...- .+ ...+=+|+
T Consensus 123 V~~Iv~~TPp~~~g~i~p~iL~aa~~~Gv~eiy~vGGaQAIAAlAyGTesi~~VDkIvGPGN~yV~~AK~~v~g~V~ID~ 202 (390)
T cd06572 123 VKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTETIPKVDKIVGPGNIYVTAAKRLVSGDVGIDM 202 (390)
T ss_pred CCeEEEEeCcCCCCCCCHHHHHHHHHcCCcEEeccCCHHHHHHHHcCCcCCCCCCEeeCCchHHHHHHHHHhcCCcCccC
Confidence 4588999998533333456778999999998888877766 67788875321100000 00 01123777
Q ss_pred CCceeEEEEEE
Q psy4399 85 GGGTFDVSILT 95 (379)
Q Consensus 85 GggT~disv~~ 95 (379)
=+|-+.+.++-
T Consensus 203 ~AGPSEvlIiA 213 (390)
T cd06572 203 PAGPSEVLVIA 213 (390)
T ss_pred CCCCceEEEEe
Confidence 78888877775
No 168
>PRK13321 pantothenate kinase; Reviewed
Probab=33.27 E-value=1.9e+02 Score=26.07 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=26.9
Q ss_pred EEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q psy4399 79 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 125 (379)
Q Consensus 79 vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l 125 (379)
++.+|+|++++-+.++. .+..........+..-+.+.+-..+.+.+
T Consensus 2 iL~IDIGnT~ik~gl~~-~~~i~~~~~~~T~~~~~~~~~~~~l~~l~ 47 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GDRLLRSFRLPTDKSRTSDELGILLLSLF 47 (256)
T ss_pred EEEEEECCCeEEEEEEE-CCEEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 57899999999999998 22222222222323345555555555544
No 169
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.72 E-value=2.7e+02 Score=25.18 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhch-----------hhHHHHHHHHh
Q psy4399 147 LRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGT-----------MEPVEKSLRDA 215 (379)
Q Consensus 147 L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i-----------~~~i~~~l~~~ 215 (379)
+...++++...-..+....+++-..+.| |+|+...++.+++.+ .+.+.+.|...
T Consensus 125 l~~~i~~~e~~T~~~~~~~Lnla~~Ygg---------------r~EI~~A~~~~~~~v~~~~~~~~~i~~~~i~~~L~~~ 189 (250)
T PRK14840 125 LQNNIEQASSATAHYSRMELVLAINYGG---------------KDELVRAFKKLHQDLANKKISSDDISEELISSYLDTS 189 (250)
T ss_pred HHHHHHHHHHHhccCCceEEEEEecCCc---------------HHHHHHHHHHHHHHHHhCCCChhhCCHHHHHHHhccC
Confidence 3334444444333444555666554444 788877777666432 13344445433
Q ss_pred cCCcCCcCEEEEEcCCCChHH
Q psy4399 216 KMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 216 ~~~~~~i~~VvLvGG~sr~p~ 236 (379)
+. .++|-++-+||-.|+..
T Consensus 190 ~~--pdpDLlIRTsGe~RLSn 208 (250)
T PRK14840 190 GL--PDPDLLIRTGGEMRVSN 208 (250)
T ss_pred CC--CCCCEEEeCCCCccccc
Confidence 33 37899999999888643
No 170
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=32.68 E-value=2.7e+02 Score=25.17 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchh-----------hHHHHHHHH
Q psy4399 146 RLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTM-----------EPVEKSLRD 214 (379)
Q Consensus 146 ~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~-----------~~i~~~l~~ 214 (379)
.+...++.+++.-..+....+++...+.| |+|+..+++.+++.+. +.+.+.|..
T Consensus 118 ~~~~~i~~~e~~t~~~~~~~l~~a~nYGG---------------R~eI~~avr~ia~~v~~g~l~~~~I~e~~i~~~L~~ 182 (245)
T COG0020 118 EVREAIEKAEEKTKNNTGLTLNIAVNYGG---------------RDEIVDAVRKIAEDVAAGKLSPEDIDEELISSHLYT 182 (245)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeeCCCC---------------HHHHHHHHHHHHHHHHcCCCChHHcCHHHHHHhhcc
Confidence 34444555555444555666666555555 8888888887776552 344455555
Q ss_pred hcCCcCCcCEEEEEcCCCChHHH
Q psy4399 215 AKMDKAQIHDIVLVGGSTRIPKV 237 (379)
Q Consensus 215 ~~~~~~~i~~VvLvGG~sr~p~v 237 (379)
.+.+ ++|-++=+||--|+...
T Consensus 183 ~~~p--dpDLlIRTsGe~RlSnF 203 (245)
T COG0020 183 SGLP--DPDLLIRTSGEQRLSNF 203 (245)
T ss_pred cCCC--CCCEEEeCCCccccccc
Confidence 4433 79999999998887544
No 171
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=32.40 E-value=52 Score=32.34 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHH-----cCC----ceeeeccchHHHHHHhccccccCCCCCC------CCceEEEEEcCCceeEEEEEE
Q psy4399 31 DSQRQATKDSGTI-----AGL----NVLRIINEPTAAAIAYGLDKKVGSAAGS------GERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 31 ~~~r~~l~~a~~~-----AGl----~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~------~~~~vlVvD~GggT~disv~~ 95 (379)
..+++++.+.++. .++ ..+++|+-.+=+.++|..-+-....... ...++-++|+||+++.|+..-
T Consensus 103 ~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~~ 182 (434)
T PF01150_consen 103 EEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFEP 182 (434)
T ss_dssp HHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEEE
T ss_pred hhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceEEEEecCCcceeeeecc
Confidence 4456666665543 244 2367777655555554321111111111 247899999999999999655
Q ss_pred E
Q psy4399 96 I 96 (379)
Q Consensus 96 ~ 96 (379)
-
T Consensus 183 ~ 183 (434)
T PF01150_consen 183 S 183 (434)
T ss_dssp T
T ss_pred C
Confidence 3
No 172
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=32.32 E-value=1.4e+02 Score=25.40 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=18.7
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEE
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKS 105 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~ 105 (379)
=+|+||..||+.++.-..+.+....
T Consensus 3 gIDvGGT~TD~v~~d~~~~~~~~~K 27 (176)
T PF05378_consen 3 GIDVGGTFTDAVLLDEDTGVVATAK 27 (176)
T ss_pred eEecCCCcEEEEEEeCCCCEEEEEE
Confidence 4899999999999986545444433
No 173
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=31.73 E-value=4.4e+02 Score=25.33 Aligned_cols=15 Identities=27% Similarity=0.694 Sum_probs=11.4
Q ss_pred CcCEEEEEcCCCChH
Q psy4399 221 QIHDIVLVGGSTRIP 235 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p 235 (379)
....|.++||.+.|-
T Consensus 97 ~~~~I~IiGG~GlmG 111 (374)
T PRK11199 97 DLRPVVIVGGKGQLG 111 (374)
T ss_pred ccceEEEEcCCChhh
Confidence 457899999877763
No 174
>PLN03170 chalcone synthase; Provisional
Probab=31.66 E-value=1.1e+02 Score=29.93 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=40.1
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcCC
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFNG 247 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~~ 247 (379)
+...+=..+..+++|++++.++.+|+.|+.+-.+. .+|.+.-.|.+.++-
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl 154 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGL 154 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCc
Confidence 34445556788999999999999999988766544 699999999999973
No 175
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.58 E-value=2.9e+02 Score=25.05 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhch-----------hhHHHHHHHHhcCCcCCcCEEEEEcCCCChH
Q psy4399 190 RARFEELNADLFRGT-----------MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 235 (379)
Q Consensus 190 r~~~~~~~~~~~~~i-----------~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p 235 (379)
|+|+..+++.+.+.+ .+.+.+.|...++ .++|-++=+||-.|+.
T Consensus 145 R~EI~~A~k~l~~~~~~g~l~~~~i~e~~i~~~L~~~~~--pdpDLlIRTsGE~RLS 199 (253)
T PRK14836 145 RWDIVTAARALAREVAAGKLAPDEIDEALLAQHLALADL--PEPDLFIRTSGELRIS 199 (253)
T ss_pred HHHHHHHHHHHHHHHHhCCCChHhCCHHHHHHHhccCCC--CCCCEEEEcCCccccc
Confidence 888888877776443 1334445544433 3789999999987763
No 176
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.56 E-value=2.7e+02 Score=25.27 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhchh---------------hHHHHHHHHhcCCcCCcCEEEEEcCCCChH
Q psy4399 190 RARFEELNADLFRGTM---------------EPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 235 (379)
Q Consensus 190 r~~~~~~~~~~~~~i~---------------~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p 235 (379)
|+|+...++.+++... +.+.+.|...+. .++|-++=+||-.|+.
T Consensus 155 r~EI~~A~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~L~~~~~--P~pDLlIRTsGE~RLS 213 (256)
T PRK14828 155 RQEIVDAVRSLLTEHKDKGTSIDELAESVTVDAISTHLYTGGQ--PDPDLVIRTSGEQRLS 213 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhccccCCHHHHHHHhccCCC--CCCCEEEeCCCCCccc
Confidence 7888777776654321 334455543333 3789999999988763
No 177
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=31.28 E-value=82 Score=28.76 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=30.2
Q ss_pred hhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 201 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 201 ~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
++.+...+...++.. .+..+++.||-+...++|+.+++...
T Consensus 206 ~~~l~~~~~~a~~~~-----~~~~lv~~GGVaaN~~lr~~l~~~~~ 246 (268)
T PF00814_consen 206 ADHLAKKAPRALEKP-----RAKSLVVSGGVAANKYLREGLRKLCS 246 (268)
T ss_dssp HHHHHHHHHHHHHHH-----TCSEEEEESGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-----cccccchHHHHHHHHHHHHHHHHHHH
Confidence 344445555555543 46789999999999999999998764
No 178
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=31.21 E-value=3.1e+02 Score=24.45 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=41.3
Q ss_pred HHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchh-----------hHHHHHHHHhcCC
Q psy4399 150 ACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTM-----------EPVEKSLRDAKMD 218 (379)
Q Consensus 150 ~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~-----------~~i~~~l~~~~~~ 218 (379)
..+++-+.-..+....+++-..+.| |+|+...++.++.++. +.+.+.|...+.+
T Consensus 105 ~i~~~e~~T~~n~~~~lnia~~Ygg---------------r~EI~~A~~~~~~~~~~g~~~~~~i~e~~~~~~L~t~~~p 169 (226)
T TIGR00055 105 KIKKAEEDTKNNTDFTLNIAFNYGG---------------RNEILHAVKQIAEKVKSGKLLPEDIDEETLNKHLYTANLP 169 (226)
T ss_pred HHHHHHHHhcCCCceEEEEEecCCC---------------HHHHHHHHHHHHHHHHhCCCChhhCCHHHHHHhhccCCCC
Confidence 3333333333455566666555554 8888888777664432 3344555444433
Q ss_pred cCCcCEEEEEcCCCChH
Q psy4399 219 KAQIHDIVLVGGSTRIP 235 (379)
Q Consensus 219 ~~~i~~VvLvGG~sr~p 235 (379)
++|-++=+||-.|+.
T Consensus 170 --dpDLlIRTsGE~RLS 184 (226)
T TIGR00055 170 --PVDLLIRTSGEMRIS 184 (226)
T ss_pred --CCCEEEeCCCccccc
Confidence 789999999977764
No 179
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.17 E-value=43 Score=30.44 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=32.3
Q ss_pred eEEEEEcCCceeEEEEEEEeCC-eEE----------------------EEEecCCCCCCHHHHHHHHHHHHHH
Q psy4399 78 NVLIFDLGGGTFDVSILTIEDG-IFE----------------------VKSTAGDTHLGGEDFDNRMVNHFVQ 127 (379)
Q Consensus 78 ~vlVvD~GggT~disv~~~~~~-~~~----------------------~~~~~~~~~lGG~~id~~l~~~l~~ 127 (379)
.++++|+|.||.|+-.+.-... .+. -++-.| ...||--.+.++.+++..
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G-~~MGGGp~travrrhlk~ 73 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIG-VPMGGGPTTRAVRRHLKK 73 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEe-eecCCChhhHHHHHHHhc
Confidence 4789999999999988763210 000 112223 567888888888877753
No 180
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=31.12 E-value=2.5e+02 Score=25.91 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=37.3
Q ss_pred CCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 130 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~ 130 (379)
....++-+|+|+.++.++++......+..........-....+-+.+.+.+.+...
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 59 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLK 59 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHH
Confidence 35678999999999999999986665444433333333335666677666655444
No 181
>PTZ00107 hexokinase; Provisional
Probab=30.90 E-value=2.1e+02 Score=28.51 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCceeEEEEEEEeCC
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIEDG 99 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~~~ 99 (379)
+...++.+|+||.++-+..+++.++
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 4567999999999999999999754
No 182
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.72 E-value=2.7e+02 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=21.3
Q ss_pred cCCcCEEEEEcCCCChHH---HHHHHHHHcC
Q psy4399 219 KAQIHDIVLVGGSTRIPK---VQKLLQDFFN 246 (379)
Q Consensus 219 ~~~i~~VvLvGG~sr~p~---v~~~l~~~f~ 246 (379)
....+.|+|.|-.+.+.. +++.|+....
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~ 296 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVF 296 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHH
Confidence 456788999998887777 7777777654
No 183
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=30.72 E-value=70 Score=24.95 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=31.2
Q ss_pred chhhHHHHHHHHhcCCcCCcCEEEEEcCCCCh--HHHHHHHHHHcCC
Q psy4399 203 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNG 247 (379)
Q Consensus 203 ~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~--p~v~~~l~~~f~~ 247 (379)
.....++++|+++++.+.+|+.|..-|-++.. +.=.+.+.+.|+.
T Consensus 26 ~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 26 ALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 34567899999999999999999999887775 4445567888874
No 184
>PRK00865 glutamate racemase; Provisional
Probab=30.66 E-value=1.1e+02 Score=27.67 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.4
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
.++.|+| |++-+|++.+.+++.++
T Consensus 177 g~d~iIL--GCTh~p~l~~~i~~~~~ 200 (261)
T PRK00865 177 GIDTLVL--GCTHYPLLKPEIQQVLG 200 (261)
T ss_pred CCCEEEE--CCcCHHHHHHHHHHHcC
Confidence 4677766 88999999999999986
No 185
>PLN02854 3-ketoacyl-CoA synthase
Probab=30.52 E-value=77 Score=32.06 Aligned_cols=52 Identities=10% Similarity=0.217 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEE-EcCCCChHHHHHHHHHHcCC
Q psy4399 189 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVL-VGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 189 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~sr~p~v~~~l~~~f~~ 247 (379)
.|+|.+.+ +...++++|+++++++.+|+.|++ +.+....|.+-.+|.+.+|-
T Consensus 184 ~r~ea~~v-------~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGl 236 (521)
T PLN02854 184 ARAEAEAV-------MFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKL 236 (521)
T ss_pred HHHHHHHH-------HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCC
Confidence 35555554 457788889999999999999987 33344579999999999873
No 186
>PLN03173 chalcone synthase; Provisional
Probab=30.03 E-value=1.2e+02 Score=29.46 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=39.2
Q ss_pred HHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcCC
Q psy4399 199 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFNG 247 (379)
Q Consensus 199 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~~ 247 (379)
...+=..+..+++|+++++++.+|+.|+.+..+. ..|.+--.|.+.+|-
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl 150 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGL 150 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCC
Confidence 3444456778899999999999999998876544 589999999999873
No 187
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=29.86 E-value=58 Score=31.87 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHH-HHHHhcccc
Q psy4399 18 VSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTA-AAIAYGLDK 66 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~A-aa~~~~~~~ 66 (379)
+.++|++.|+. +..---.+.-||..+|++.+.-+-=..| ||++|++..
T Consensus 151 V~~Iv~~TPp~-~g~i~p~vL~AA~~~Gv~eIy~vGGAQAIAAlAyGTet 199 (425)
T PRK00877 151 VKEIVMVTPPP-DGEINPAILAAAALAGVDEVYKVGGAQAIAALAYGTES 199 (425)
T ss_pred CCeEEEEeCCC-CCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCC
Confidence 56889999986 4444557788999999999888887776 678888754
No 188
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=29.84 E-value=1e+02 Score=28.48 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHhcCCcCCcCEEE-EEcCCCChHHHHHHHHHHcC
Q psy4399 204 TMEPVEKSLRDAKMDKAQIHDIV-LVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 204 i~~~i~~~l~~~~~~~~~i~~Vv-LvGG~sr~p~v~~~l~~~f~ 246 (379)
+...+++.|+++++.+.+|+.++ -+..+.-.|.+-.+|-+.|+
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 46788899999999999999855 45667888999999999997
No 189
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.83 E-value=3.4e+02 Score=24.55 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhch-----------hhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 190 RARFEELNADLFRGT-----------MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 190 r~~~~~~~~~~~~~i-----------~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
|+|+...++.+.+.+ .+.+.+.|..... .++|-++=+||-.|+..
T Consensus 145 r~EI~~A~k~~~~~~~~g~~~~~dI~e~~i~~~L~~~~~--pdpDLLIRTsGe~RLSn 200 (249)
T PRK14834 145 RDEIARAVRRLAREVAEGRLDPASIDAETISANLDTADI--PDPDLIIRTSGEQRLSN 200 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCChhhCCHHHHHHHhccCCC--CCCCEEEEcCCcccccC
Confidence 888888777765432 2344455544333 37899999999877643
No 190
>PRK13320 pantothenate kinase; Reviewed
Probab=29.65 E-value=1.9e+02 Score=26.00 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCCh
Q psy4399 190 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 234 (379)
Q Consensus 190 r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~ 234 (379)
++.-+.+....+......++..+++......+ -.|+++||.++.
T Consensus 173 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~-~~vi~TGG~a~~ 216 (244)
T PRK13320 173 RSTEECIRSGVVWGCVAEIEGLIEAYKSKLPE-LLVILTGGDAPF 216 (244)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEECCCHHH
Confidence 33444444455555555555555433211112 479999999754
No 191
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=29.22 E-value=2.7e+02 Score=21.46 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCC-CCCcEEEEcCCCCCHH-HHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 4 TKMKETAEAYLGK-TVSNAVITVPAYFNDS-QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 4 ~~l~~~a~~~~~~-~~~~~vitvPa~~~~~-~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
+.+++.++..+|. ...-.+++.+..-+.. ..+.++++++... . .+..+++
T Consensus 12 ~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~-----------------------~-----~~~vlil 63 (116)
T PF03610_consen 12 EGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELD-----------------------E-----GDGVLIL 63 (116)
T ss_dssp HHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCC-----------------------T-----TSEEEEE
T ss_pred HHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhcc-----------------------C-----CCcEEEE
Confidence 4466677777777 3334455655554433 3455555543321 0 3577888
Q ss_pred EEcCCceeEE
Q psy4399 82 FDLGGGTFDV 91 (379)
Q Consensus 82 vD~GggT~di 91 (379)
+|++|||.--
T Consensus 64 ~Dl~ggsp~n 73 (116)
T PF03610_consen 64 TDLGGGSPFN 73 (116)
T ss_dssp ESSTTSHHHH
T ss_pred eeCCCCccch
Confidence 9999998543
No 192
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=29.05 E-value=2.2e+02 Score=25.00 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeecc----chHHHHHH
Q psy4399 3 LTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN----EPTAAAIA 61 (379)
Q Consensus 3 L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~----Ep~Aaa~~ 61 (379)
|-+|.++.++ +..-..+||.+|..|...+.. ++++...+++.+.+.. .|.|||.-
T Consensus 141 L~~l~elie~--~~~~palvIg~PVGFv~Aaes--Ke~L~~~~iP~itv~G~rGGS~vAaAiv 199 (210)
T COG2082 141 LFELLELIEE--GGIKPALVIGVPVGFVGAAES--KEALRESPIPYITVRGRRGGSPVAAAIV 199 (210)
T ss_pred HHHHHHHHHc--cCCCCcEEEEcCCcccchHHH--HHHHHhCCCCeEEEecCCCCHHHHHHHH
Confidence 4567777776 334448999999999966543 4555556677665543 56666653
No 193
>PRK14878 UGMP family protein; Provisional
Probab=29.03 E-value=65 Score=30.37 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=35.3
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHH
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 239 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~ 239 (379)
....+.+...++++|++++++..+++.|.++-|-...++++-
T Consensus 42 ~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrv 83 (323)
T PRK14878 42 QHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRV 83 (323)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHH
Confidence 456677889999999999999999999999988777776663
No 194
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=28.86 E-value=5.4 Score=31.55 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcC---Cceee---------eccch-HHHHHH
Q psy4399 4 TKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAG---LNVLR---------IINEP-TAAAIA 61 (379)
Q Consensus 4 ~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AG---l~~~~---------lv~Ep-~Aaa~~ 61 (379)
+.-.+.||+..+.++..+++++ .....+.+.++++.++ ++.-. ++.+| .|+|++
T Consensus 53 ~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 53 KIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp T--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 3445667777677777777766 5556677888888887 66666 78889 888775
No 195
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.64 E-value=1.2e+02 Score=31.57 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=27.6
Q ss_pred CCcCEEEEEcCCCChHHHHHHHHHHcCCccccc
Q psy4399 220 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 252 (379)
Q Consensus 220 ~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~ 252 (379)
..|+.|+|+||.....++.+.+.+.++..+.++
T Consensus 692 ~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~ 724 (750)
T COG0068 692 YGINKVVLSGGVFQNRLLLERLAKYLKKEGFRF 724 (750)
T ss_pred cCccEEEeeCCeeecHHHHHHHHHHHHhcCceE
Confidence 357899999999999999999999998644433
No 196
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=28.58 E-value=83 Score=29.58 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHH
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 238 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~ 238 (379)
..+.+.+...++++|++++++..+++.|.++-|-...++++
T Consensus 43 ~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 43 EHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 45667788889999999999999999999999877777766
No 197
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=28.56 E-value=1.4e+02 Score=21.90 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=17.0
Q ss_pred EEEEEcCCceeEEEEEEEeCC
Q psy4399 79 VLIFDLGGGTFDVSILTIEDG 99 (379)
Q Consensus 79 vlVvD~GggT~disv~~~~~~ 99 (379)
+|-+|+||..+-++++.-.+.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~ 23 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGK 23 (99)
T ss_pred EEEEccCCCeEEEEEECCCCC
Confidence 789999999999998865333
No 198
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=27.49 E-value=66 Score=29.39 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=37.4
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHH
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 242 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~ 242 (379)
+.+.+.+...++++|++++++..+++.|..+-|=+...+||--+.
T Consensus 27 r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~ 71 (268)
T PF00814_consen 27 RQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLS 71 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHH
Confidence 567788889999999999999999999999999988889875544
No 199
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=27.46 E-value=40 Score=21.79 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=19.3
Q ss_pred cCccccCCCChhhHHHhhHHHHH
Q psy4399 278 NGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 278 ~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
+|.++....|+++|.++|.++.+
T Consensus 27 GGGRLVvEl~~~Ea~~L~~~l~~ 49 (51)
T PF11314_consen 27 GGGRLVVELNPDEAKELGEALKE 49 (51)
T ss_pred CCcEEEEEeCHHHHHHHHHHHHh
Confidence 45678888999999999999754
No 200
>PRK13318 pantothenate kinase; Reviewed
Probab=27.15 E-value=2.7e+02 Score=25.06 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=15.8
Q ss_pred EEEEEcCCceeEEEEEE
Q psy4399 79 VLIFDLGGGTFDVSILT 95 (379)
Q Consensus 79 vlVvD~GggT~disv~~ 95 (379)
++.+|+|++++-+.++.
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 57899999999999998
No 201
>PF13941 MutL: MutL protein
Probab=26.98 E-value=1.5e+02 Score=29.55 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=22.8
Q ss_pred EEEEEcCCceeEEEEEEEeCCeEEEEEec
Q psy4399 79 VLIFDLGGGTFDVSILTIEDGIFEVKSTA 107 (379)
Q Consensus 79 vlVvD~GggT~disv~~~~~~~~~~~~~~ 107 (379)
++++|||..+|-++++....+..+.++.+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a 30 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQA 30 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEE
Confidence 79999999999999999655555555433
No 202
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=26.85 E-value=3e+02 Score=27.71 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=32.2
Q ss_pred EEEEEcCCceeEEEEEEEeCCe-EEEEEecCCCCCCHHHHHHHHH
Q psy4399 79 VLIFDLGGGTFDVSILTIEDGI-FEVKSTAGDTHLGGEDFDNRMV 122 (379)
Q Consensus 79 vlVvD~GggT~disv~~~~~~~-~~~~~~~~~~~lGG~~id~~l~ 122 (379)
=+-+|+|.+++-..++.+..+. .....+....--||+++|....
T Consensus 166 GvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 166 GVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 3569999999999999987763 3444444545679999887654
No 203
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.81 E-value=3.9e+02 Score=24.19 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=37.2
Q ss_pred CCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhch-----------hhHHHHHHHHhcCCcCCcCEEEEE
Q psy4399 160 SSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGT-----------MEPVEKSLRDAKMDKAQIHDIVLV 228 (379)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i-----------~~~i~~~l~~~~~~~~~i~~VvLv 228 (379)
.+....+++-..+.| |+|+..+++.+++++ .+.+.+.|...+. .++|-++=+
T Consensus 138 ~~~~~~Lnia~~Ygg---------------R~EI~~A~~~~~~~v~~g~l~~~~I~e~~i~~~L~~~~~--pdpDLlIRT 200 (251)
T PRK14830 138 NNTGLILNFALNYGG---------------RAEIVSAVKEIAKDVLDGKLNPEDITEELISNYLMTKGL--PDPDLLIRT 200 (251)
T ss_pred CCCceEEEEEecCCC---------------HHHHHHHHHHHHHHHHcCCCChHhCCHHHHHHHhCcCCC--CCCCEEEeC
Confidence 345556666554444 888888877766432 2334444443333 368999999
Q ss_pred cCCCChHH
Q psy4399 229 GGSTRIPK 236 (379)
Q Consensus 229 GG~sr~p~ 236 (379)
||-.|+..
T Consensus 201 sGe~RLSn 208 (251)
T PRK14830 201 SGELRLSN 208 (251)
T ss_pred CCCCcccC
Confidence 99888743
No 204
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=26.60 E-value=87 Score=29.20 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=39.1
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHH
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 242 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~ 242 (379)
...+.+.+...++++|++++++..+++.|.++-|-...++++--+.
T Consensus 45 ~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~ 90 (305)
T TIGR00329 45 SRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGAT 90 (305)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHH
Confidence 3457788889999999999999999999999999998888874433
No 205
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=26.60 E-value=1.5e+02 Score=26.75 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=20.3
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
+++.|+| |++..|++.+.+++.++
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~ 195 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLP 195 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcC
Confidence 3566655 99999999999999986
No 206
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=26.28 E-value=64 Score=27.42 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.4
Q ss_pred ChhhHHHhhHHHHHHHHhCC
Q psy4399 287 NPDEAVAYGAAVQAAILHGD 306 (379)
Q Consensus 287 ~p~~aVA~Gaa~~a~~l~~~ 306 (379)
-|-.+++.|+-+.+..+.|.
T Consensus 82 ~pilgiC~G~q~l~~~lGG~ 101 (188)
T cd01741 82 KPVLGICLGHQLLARALGGK 101 (188)
T ss_pred CCEEEECccHHHHHHHhCCE
Confidence 57788999999998888763
No 207
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=25.84 E-value=1.1e+02 Score=29.25 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=39.2
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHH
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 241 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l 241 (379)
....+.+.+...++++|+++++...+|+.|..+-|-...+.++=-+
T Consensus 45 a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~ 90 (345)
T PTZ00340 45 TAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGA 90 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHH
Confidence 3457788899999999999999999999999999988878876443
No 208
>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids. The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.
Probab=25.79 E-value=1.1e+02 Score=20.78 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=21.0
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHcCCce
Q psy4399 22 VITVPAYFNDSQRQATKDSGTIAGLNV 48 (379)
Q Consensus 22 vitvPa~~~~~~r~~l~~a~~~AGl~~ 48 (379)
.++.|+ .+..+|..+.+.|+..|+..
T Consensus 22 ~~~f~p-m~~~~R~~iH~~a~~~gL~s 47 (63)
T PF01424_consen 22 SLEFPP-MNSFERKLIHELAEYYGLKS 47 (63)
T ss_dssp EEEEEC---SHHHHHHHHHHHHCTEEE
T ss_pred EEEECC-CCHHHHHHHHHHHHHCCCEE
Confidence 777777 89999999999999999865
No 209
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=25.73 E-value=2.7e+02 Score=21.57 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhcc
Q psy4399 3 LTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 64 (379)
Q Consensus 3 L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~ 64 (379)
+.+|.+..+++....+.=+.|+.|..-.+.....+++.++.-|++-..+.+.....+-.|..
T Consensus 42 ~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v 103 (126)
T cd03012 42 LPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGN 103 (126)
T ss_pred HHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCC
Confidence 34555555555433333333444432223446677777777777654444443334444443
No 210
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=25.64 E-value=2.2e+02 Score=25.92 Aligned_cols=46 Identities=15% Similarity=0.024 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHH
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~ 120 (379)
+...++.+|+|..++-+.+.+.....+.+.......--.|.-+|-.
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~di~ 67 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVDFI 67 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEeeHH
Confidence 4678999999999999888876554555555444444456555533
No 211
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.22 E-value=3.6e+02 Score=24.07 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=40.3
Q ss_pred HHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhch-----------hhHHHHHHHHhcCC
Q psy4399 150 ACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGT-----------MEPVEKSLRDAKMD 218 (379)
Q Consensus 150 ~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i-----------~~~i~~~l~~~~~~ 218 (379)
..+++...-..+....+++-..+.| |+|+..+++.+++.+ .+.+.+.|...+.
T Consensus 99 ~i~~~e~~T~~~~~~~Lnla~~Ygg---------------r~EI~~A~~~~~~~v~~g~~~~~~i~e~~i~~~L~t~~~- 162 (229)
T PRK10240 99 RIRKSEALTAGNTGLTLNIAANYGG---------------RWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMHEL- 162 (229)
T ss_pred HHHHHHHHhcCCCCeEEEEEeccCC---------------HHHHHHHHHHHHHHHHcCCCChhhCCHHHHHHHhccCCC-
Confidence 3333333333445556666554444 788877777665332 1334445533332
Q ss_pred cCCcCEEEEEcCCCChHH
Q psy4399 219 KAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 219 ~~~i~~VvLvGG~sr~p~ 236 (379)
.++|-++=+||-.|+..
T Consensus 163 -pdpDLlIRTsGe~RLSn 179 (229)
T PRK10240 163 -APVDLVIRTGGEHRISN 179 (229)
T ss_pred -CCCCEEEeCCCcccccC
Confidence 36899999999877643
No 212
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=25.16 E-value=2.2e+02 Score=20.69 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=18.5
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
....|+++|++|- .++..+|...|+
T Consensus 38 GpK~VLViGaStG-yGLAsRIa~aFg 62 (78)
T PF12242_consen 38 GPKKVLVIGASTG-YGLASRIAAAFG 62 (78)
T ss_dssp S-SEEEEES-SSH-HHHHHHHHHHHC
T ss_pred CCceEEEEecCCc-ccHHHHHHHHhc
Confidence 3567888877766 689999999996
No 213
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.04 E-value=4.3e+02 Score=24.01 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhchh-----------hHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 190 RARFEELNADLFRGTM-----------EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 190 r~~~~~~~~~~~~~i~-----------~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
|+|+...++.+++.+. +.+.+.|...+. .++|-++=+||-.|+..
T Consensus 149 r~EI~~A~k~~~~~v~~g~~~~~~i~e~~i~~~L~~~~~--Pd~DLlIRTsGE~RLSn 204 (253)
T PRK14832 149 RNEITRACRQVAELVQQGKLSADAVNEQLVEQHLYTADT--PPPDLLIRTSGEMRLSN 204 (253)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhCCHHHHHHhhCcCCC--CCCCEEEECCCcccccC
Confidence 8888887777654321 234444443333 37899999999887643
No 214
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=25.01 E-value=1.5e+02 Score=28.12 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=40.0
Q ss_pred HHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 195 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 195 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
...+.+++.+...++++|++++.+..+||.|-.+=|-...+.+.--
T Consensus 45 ~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG 90 (342)
T COG0533 45 LASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVG 90 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHH
Confidence 3446788999999999999999999999999999999888887643
No 215
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=24.66 E-value=42 Score=28.65 Aligned_cols=31 Identities=39% Similarity=0.314 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCceeeeccchHHHHHH
Q psy4399 31 DSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61 (379)
Q Consensus 31 ~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~ 61 (379)
....+.+.++++.||++...++.+|.|++.+
T Consensus 156 ~~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 156 KSAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred hHHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 4668889999999999999999999998754
No 216
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=24.20 E-value=1e+02 Score=28.85 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=39.6
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHH
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 242 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~ 242 (379)
...+.+.+...|+++|+++++...+|+.|.++-|-...+++|--+.
T Consensus 46 ~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~ 91 (314)
T TIGR03723 46 SRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVS 91 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHH
Confidence 3567788889999999999999999999999999999999876544
No 217
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=24.11 E-value=4.4e+02 Score=23.32 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhch-----------hhHHHHHHHHhcCCcCCcCEEEEEcCCCChH
Q psy4399 190 RARFEELNADLFRGT-----------MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 235 (379)
Q Consensus 190 r~~~~~~~~~~~~~i-----------~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p 235 (379)
|+|+...++.+++.. .+.+.+.|...+. .++|-++-+||-.|+.
T Consensus 131 r~eI~~a~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~~~--p~pDLlIRTsGe~RLS 185 (221)
T cd00475 131 RQEIIHAVREIAEKVKAGKLTPEDIDESTLNKHLYTHDS--PDPDLLIRTSGEQRLS 185 (221)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHhCCHHHHHHhhCcCCC--CCCCEEEecCCccccc
Confidence 888888777766432 1233444443332 3789999999988764
No 218
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=23.82 E-value=75 Score=27.23 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.0
Q ss_pred ChhhHHHhhHHHHHHHHhCC
Q psy4399 287 NPDEAVAYGAAVQAAILHGD 306 (379)
Q Consensus 287 ~p~~aVA~Gaa~~a~~l~~~ 306 (379)
-|-.+++.|+-+.+..+.|.
T Consensus 101 ~PilgiC~G~Q~l~~~~Gg~ 120 (189)
T cd01745 101 KPILGICRGMQLLNVALGGT 120 (189)
T ss_pred CCEEEEcchHHHHHHHhCCe
Confidence 47788999999999988884
No 219
>KOG1369|consensus
Probab=23.72 E-value=6.3e+02 Score=25.29 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=22.9
Q ss_pred CCCceEEEEEcCCceeEEEEEEEeCC
Q psy4399 74 SGERNVLIFDLGGGTFDVSILTIEDG 99 (379)
Q Consensus 74 ~~~~~vlVvD~GggT~disv~~~~~~ 99 (379)
++...++.+|+||..+-+..+.+.++
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L~g~ 108 (474)
T KOG1369|consen 83 TEKGKFLALDLGGTNFRVLLVKLGGG 108 (474)
T ss_pred CcCCCEEEEecCCCceEEEEEEecCC
Confidence 35678999999999999999999776
No 220
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.71 E-value=5e+02 Score=23.40 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhch-----------hhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 190 RARFEELNADLFRGT-----------MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 190 r~~~~~~~~~~~~~i-----------~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
|+|+..+++.+++.+ .+.+.+.|...+. .++|-++=+||-.|+..
T Consensus 145 r~EI~~A~~~~~~~~~~g~~~~~~i~e~~i~~~L~~~~~--pdpDLlIRTsGe~RLSn 200 (243)
T PRK14829 145 RAEIADAAAAIAREVRDGKISGDRVTEKMISDHLYNPDM--PDVDLFLRTSGEQRTSN 200 (243)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHhCCHHHHHHHhccCCC--CCCCEEEEcCCcccccC
Confidence 888888777665432 1234445544333 37899999999887643
No 221
>PLN02596 hexokinase-like
Probab=23.51 E-value=1.1e+02 Score=30.65 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=22.4
Q ss_pred CCCceEEEEEcCCceeEEEEEEEeCC
Q psy4399 74 SGERNVLIFDLGGGTFDVSILTIEDG 99 (379)
Q Consensus 74 ~~~~~vlVvD~GggT~disv~~~~~~ 99 (379)
.+...++.+|+||.++-+..+++.++
T Consensus 93 ~E~G~yLAlDlGGTNfRV~~V~L~g~ 118 (490)
T PLN02596 93 DEKGLYYGLNLRGSNFLLLRARLGGK 118 (490)
T ss_pred CcceEEEEEeeCCceEEEEEEEEcCC
Confidence 35677899999999999999999754
No 222
>KOG0678|consensus
Probab=23.45 E-value=3.2e+02 Score=25.86 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=59.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHHHH-cCCceeeeccchH-HHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEE
Q psy4399 19 SNAVITVPAYFNDSQRQATKDSGTI-AGLNVLRIINEPT-AAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~a~~~-AGl~~~~lv~Ep~-Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~ 96 (379)
....+|.|..-..+.|+.+.+..-. -+..-+.+.-... |.+..|....-.. +.-+=+|+|-|.|-|.+-.+.
T Consensus 107 h~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~e-----r~ltG~VidsGdgvThvipva- 180 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGE-----RFLTGIVIDSGDGVTHVIPVA- 180 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhh-----heeeeEEEecCCCeeEEEEee-
Confidence 4688999999999999998886433 2333333322222 2233332221111 233447999999998876665
Q ss_pred eCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q psy4399 97 EDGIFEVKSTAGDTHLGGEDFDNRMVNHF 125 (379)
Q Consensus 97 ~~~~~~~~~~~~~~~lGG~~id~~l~~~l 125 (379)
+| +.+.+.-....+.|++++.-+...+
T Consensus 181 -Eg-yVigScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 181 -EG-YVIGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred -cc-eEEeeeeccccccCCchhHHHHHHh
Confidence 44 3344434558899999986555544
No 223
>PRK09604 UGMP family protein; Validated
Probab=23.34 E-value=1.1e+02 Score=28.91 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHH
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 242 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~ 242 (379)
..+.+.+...++++|+++++...+|+.|..+.|-...++++--+.
T Consensus 49 ~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~ 93 (332)
T PRK09604 49 RAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVS 93 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHH
Confidence 456677888999999999999999999999999888888866544
No 224
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=23.10 E-value=88 Score=27.15 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHHcCC
Q psy4399 29 FNDSQRQATKDSGTIAGL 46 (379)
Q Consensus 29 ~~~~~r~~l~~a~~~AGl 46 (379)
.+..+|+++..|+...|+
T Consensus 102 L~a~~r~~v~~aa~~vGl 119 (231)
T COG3840 102 LNAEQREKVEAAAAQVGL 119 (231)
T ss_pred cCHHHHHHHHHHHHHhCh
Confidence 356677777777777666
No 225
>PRK12408 glucokinase; Provisional
Probab=23.08 E-value=2.3e+02 Score=26.82 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=29.5
Q ss_pred HcCCceeeeccchHHHHHHhccccccC----CCCCCCC-ceEEEEEcCCceeEEEEE
Q psy4399 43 IAGLNVLRIINEPTAAAIAYGLDKKVG----SAAGSGE-RNVLIFDLGGGTFDVSIL 94 (379)
Q Consensus 43 ~AGl~~~~lv~Ep~Aaa~~~~~~~~~~----~~~~~~~-~~vlVvD~GggT~disv~ 94 (379)
..|++.+.++|+-.|+|++-....... ....+.. ..++++=+|-|-=---++
T Consensus 107 ~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGiGggivi 163 (336)
T PRK12408 107 QLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGLGAALWI 163 (336)
T ss_pred HcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcceEEEEE
Confidence 458877999999999998753321100 0001111 467777777654333333
No 226
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.99 E-value=1.4e+02 Score=23.02 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=35.9
Q ss_pred HHhhchhhHHHHHHHHhcCCcCCcCE--EEEEcCCCChHHHHHHHHHHcCC
Q psy4399 199 DLFRGTMEPVEKSLRDAKMDKAQIHD--IVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 199 ~~~~~i~~~i~~~l~~~~~~~~~i~~--VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
.....+.+.|+..|+.++....+|-. |+|+.-....+.+.+...++|+.
T Consensus 33 ~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~~ 83 (111)
T cd02198 33 AQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFKE 83 (111)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcCC
Confidence 34455667777888888888777655 57776557888888888999974
No 227
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=22.46 E-value=73 Score=31.13 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=0.0
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHH
Q psy4399 25 VPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 59 (379)
Q Consensus 25 vPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa 59 (379)
+|..|+.-||+++--|-...=-+.+.+++||+.|.
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSAL 457 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSAL 457 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHh
No 228
>PLN02362 hexokinase
Probab=22.39 E-value=1.2e+02 Score=30.59 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCceeEEEEEEEeCC
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIEDG 99 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~~~ 99 (379)
+...++.+|+||.++-+..+++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred cceeEEEEecCCceEEEEEEEecCC
Confidence 4577999999999999999999764
No 229
>PLN02192 3-ketoacyl-CoA synthase
Probab=22.29 E-value=1.7e+02 Score=29.49 Aligned_cols=46 Identities=7% Similarity=0.171 Sum_probs=36.4
Q ss_pred hchhhHHHHHHHHhcCCcCCcCEEEEEcC-CCChHHHHHHHHHHcCC
Q psy4399 202 RGTMEPVEKSLRDAKMDKAQIHDIVLVGG-STRIPKVQKLLQDFFNG 247 (379)
Q Consensus 202 ~~i~~~i~~~l~~~~~~~~~i~~VvLvGG-~sr~p~v~~~l~~~f~~ 247 (379)
.-+...++++|+++++++.+|+.|+.... ....|.+-.+|.+.++-
T Consensus 178 ~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGl 224 (511)
T PLN02192 178 TVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKL 224 (511)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCC
Confidence 34567888999999999999999876532 23479999999999973
No 230
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=22.21 E-value=71 Score=31.12 Aligned_cols=48 Identities=23% Similarity=0.377 Sum_probs=36.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHH-HHHHhcccc
Q psy4399 18 VSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTA-AAIAYGLDK 66 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~A-aa~~~~~~~ 66 (379)
+.++|++.|+.=+. --..+.-||+.+|++.+.-+-=..| ||++|+...
T Consensus 147 v~~Iv~~tPp~~~g-v~p~iL~AA~~~Gv~eIy~vGGAQAIAAlAYGTet 195 (425)
T COG0141 147 VEEIVVVTPPPKDG-VNPEILAAARLAGVDEVYKVGGAQAIAALAYGTET 195 (425)
T ss_pred CceEEEECCCCCCC-CCHHHHHHHHHhCcHHHHHccCHHHHHHHHccCCc
Confidence 55889999987433 3456788999999998888877666 678888653
No 231
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.78 E-value=5.8e+02 Score=22.80 Aligned_cols=44 Identities=16% Similarity=0.363 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhch----------hhHHHHHHHHhcCCcCCcCEEEEEcCCCChH
Q psy4399 190 RARFEELNADLFRGT----------MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 235 (379)
Q Consensus 190 r~~~~~~~~~~~~~i----------~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p 235 (379)
|+|+...++.++++. .+.+.+.|...+. .++|-++=+||-.|+.
T Consensus 135 r~EI~~A~~~~~~~~~~~~~~~~i~e~~l~~~L~~~~~--p~pDLlIRTsGE~RLS 188 (233)
T PRK14833 135 KDEISRAFKKLLESPPSHIGELESLEEEISNCLDTADL--PEVDLLIRTGGEMRLS 188 (233)
T ss_pred HHHHHHHHHHHHHHhhcccCcccCCHHHHHHHhccCCC--CCCCEEEECCCCcccc
Confidence 888888887776543 1344455543332 3689999999988864
No 232
>PLN03168 chalcone synthase; Provisional
Probab=21.37 E-value=2e+02 Score=27.94 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=38.6
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCC-CChHHHHHHHHHHcC
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFN 246 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-sr~p~v~~~l~~~f~ 246 (379)
+...+=..+..+++|+++++++.+|++|+++-.+ -.+|.+--.|.+.+|
T Consensus 99 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 99 VQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 3444455678899999999999999999876432 347999999999997
No 233
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=21.32 E-value=78 Score=29.66 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=37.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHH
Q psy4399 18 VSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 59 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa 59 (379)
...+.=.+|..++.-+|+++--|+..|.=+.+.+.+||+.|.
T Consensus 143 ~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTAL 184 (316)
T COG0444 143 PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184 (316)
T ss_pred HHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchh
Confidence 345778899999999999999999999999999999999864
No 234
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=21.20 E-value=85 Score=30.08 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=36.4
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
++..+..+...++++|+++++.+.+|+.+++-+++.++ +...+++.|+
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~--~d~~~~~llg 313 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINM--NQLIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH--HHHHHHHhcc
Confidence 34556667788999999999999999999999998874 2333444455
No 235
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=21.14 E-value=1.8e+02 Score=25.93 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=28.8
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHH
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 243 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~ 243 (379)
+...+.+.+.+.+.+++.+ .-.+.|.||++-.+..+...+.
T Consensus 10 ~~~a~~i~~~i~~~i~~~~-----~~~lalsGGstp~~~y~~L~~~ 50 (233)
T TIGR01198 10 EALAERIATKLQTALAERG-----QFSLALSGGRSPIALLEALAAQ 50 (233)
T ss_pred HHHHHHHHHHHHHHHHhcC-----cEEEEECCCccHHHHHHHHhhC
Confidence 3444555666666665433 3579999999999988888864
No 236
>KOG1154|consensus
Probab=21.00 E-value=1.6e+02 Score=26.43 Aligned_cols=54 Identities=24% Similarity=0.352 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHH-cCCceeeeccchHHH
Q psy4399 5 KMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTI-AGLNVLRIINEPTAA 58 (379)
Q Consensus 5 ~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~-AGl~~~~lv~Ep~Aa 58 (379)
.+.+..=.+++.++..+.+|-|...+..+|..+...+.. ..+.++-+++|-.|.
T Consensus 102 alye~lF~Qy~~~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDav 156 (285)
T KOG1154|consen 102 ALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAV 156 (285)
T ss_pred HHHHHHHHHhccchheeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCcc
Confidence 345555567899999999999999999999999886544 356666677665553
No 237
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=20.95 E-value=1.4e+02 Score=25.92 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=39.0
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHH
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 243 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~ 243 (379)
..+-+.+...|++.|++++.+..+++.|.++=|-+...++|=-+.-
T Consensus 31 ~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~GPGSfTGlRig~~~ 76 (202)
T TIGR03725 31 RNHSEILLPMIEELLAEAGLSLQDLDAIAVGVGPGSFTGLRIGLAT 76 (202)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHH
Confidence 4566777888999999999999999999999999888888876554
No 238
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=20.94 E-value=2.3e+02 Score=22.15 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCCC--cEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchH
Q psy4399 5 KMKETAEAYLGKTVS--NAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPT 56 (379)
Q Consensus 5 ~l~~~a~~~~~~~~~--~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~ 56 (379)
.|.+........... .++|..-..-....-..+.++++.+|+..+.++.+++
T Consensus 77 ~L~~~l~~~~~~~~~~~~v~i~aD~~~~y~~vv~vl~~l~~~g~~~v~l~t~~e 130 (130)
T PF02472_consen 77 ELEARLKELKQKNPDPVRVLIRADKDAPYQDVVDVLDALREAGFTKVSLATEKE 130 (130)
T ss_dssp CHHHHHHHHCCC-TTS--EEEEE-TTS-HHHHHHHHHHHHHTT---EE-TT---
T ss_pred HHHHHHHHhhccCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 355555555444333 5888888888888889999999999999999887753
No 239
>PRK07157 acetate kinase; Provisional
Probab=20.66 E-value=2.4e+02 Score=27.45 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=31.8
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH-HHHHHHHHcC
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK-VQKLLQDFFN 246 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~-v~~~l~~~f~ 246 (379)
+-++.++.+.|-......+ ..+|.|+++||-+.... +|+.|.+.++
T Consensus 300 d~f~yri~k~Ig~~~a~L~---G~vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 300 DLYAQKIVDYLANYINKIG---KKIDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCCEEEECCccccCcHHHHHHHHhhcc
Confidence 3444455555554444332 14899999999888876 9999999875
No 240
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=20.63 E-value=6.2e+02 Score=22.70 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=15.2
Q ss_pred EEcCCceeEEEEEEEeCC
Q psy4399 82 FDLGGGTFDVSILTIEDG 99 (379)
Q Consensus 82 vD~GggT~disv~~~~~~ 99 (379)
+|.||++|.+.++...+.
T Consensus 3 IDgGgTkt~~vl~d~~g~ 20 (271)
T PF01869_consen 3 IDGGGTKTKAVLVDENGN 20 (271)
T ss_dssp EEECSSEEEEEEEETTSE
T ss_pred EeeChheeeeEEEeCCCC
Confidence 899999999999986443
No 241
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.51 E-value=6.2e+02 Score=22.79 Aligned_cols=73 Identities=10% Similarity=0.167 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhch------------hhHHHHHHHH
Q psy4399 147 LRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGT------------MEPVEKSLRD 214 (379)
Q Consensus 147 L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i------------~~~i~~~l~~ 214 (379)
+.+.++++...-..+....+++-..+.+ |+|+...++.++.+. .+.+.+.|..
T Consensus 111 l~~~i~~~e~~T~~~~~~~Lnia~~Ygg---------------r~EI~~A~~~~~~~~~~~~~~~~~~i~e~~~~~~L~t 175 (241)
T PRK14842 111 VLDKIDFAMAKTKKNKNLTVNFCLNYGS---------------HDELLRAAQEVFLARKAKKVTLEKPLKEKEFEKFLYT 175 (241)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEecCCC---------------HHHHHHHHHHHHHHHHcCCCCccccCCHHHHHHHhCc
Confidence 3334444443334455556666554444 788877777766331 2344455544
Q ss_pred hcCCcCCcCEEEEEcCCCChHH
Q psy4399 215 AKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 215 ~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
.+. .++|-|+=+||-.|+..
T Consensus 176 ~~~--p~pDLlIRTsGE~RLSn 195 (241)
T PRK14842 176 SPL--PPVDLLIRTAGEQRLSN 195 (241)
T ss_pred CCC--CCCCEEEECCCcccccC
Confidence 433 36899999999888743
No 242
>PRK12440 acetate kinase; Reviewed
Probab=20.40 E-value=2.3e+02 Score=27.60 Aligned_cols=46 Identities=9% Similarity=0.124 Sum_probs=32.7
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH-HHHHHHHHcC
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK-VQKLLQDFFN 246 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~-v~~~l~~~f~ 246 (379)
++-++.++.+.|-......+ .+|.|+++||-+.... +|+.|.+.++
T Consensus 300 ~d~f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 300 FEVFTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34444555555555554433 4899999999888766 9999999875
No 243
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=20.20 E-value=2.1e+02 Score=27.39 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=21.6
Q ss_pred EEEEEcCCceeEEEEEEEeCCeEEEEE
Q psy4399 79 VLIFDLGGGTFDVSILTIEDGIFEVKS 105 (379)
Q Consensus 79 vlVvD~GggT~disv~~~~~~~~~~~~ 105 (379)
+||++.|++++.+.+++-....++...
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~ 28 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETL 28 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeee
Confidence 799999999999999987655554433
No 244
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.05 E-value=1.9e+02 Score=26.79 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=36.5
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
++...++.+.+.+++.|+++++.+.+|+.+++-.++ +.+.+.+.+.++
T Consensus 219 ~~~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg 266 (325)
T PRK12879 219 VFKWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLG 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcC
Confidence 334445667788899999999999999999998776 344567777775
Done!