Query psy4399
Match_columns 379
No_of_seqs 277 out of 1854
Neff 9.1
Searched_HMMs 29240
Date Sat Aug 17 00:31:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9q_A Chaperone protein DNAK; 100.0 1.3E-53 4.5E-58 432.2 33.0 289 1-350 118-420 (605)
2 1yuw_A Heat shock cognate 71 k 100.0 1.9E-53 6.6E-58 427.1 33.9 308 1-374 122-435 (554)
3 3d2f_A Heat shock protein homo 100.0 1.9E-53 6.5E-58 434.3 31.6 281 1-323 121-401 (675)
4 2kho_A Heat shock protein 70; 100.0 9.3E-53 3.2E-57 426.0 26.3 289 1-350 118-420 (605)
5 2v7y_A Chaperone protein DNAK; 100.0 5.4E-51 1.8E-55 406.1 32.7 271 1-322 92-366 (509)
6 3i33_A Heat shock-related 70 k 100.0 3.2E-47 1.1E-51 369.3 32.6 263 1-305 141-403 (404)
7 4gni_A Putative heat shock pro 100.0 5.7E-47 2E-51 368.1 30.2 269 1-305 133-403 (409)
8 3qfu_A 78 kDa glucose-regulate 100.0 4.4E-46 1.5E-50 360.1 32.6 259 1-304 136-394 (394)
9 1dkg_D Molecular chaperone DNA 100.0 2.9E-44 1E-48 346.1 27.4 258 1-304 118-383 (383)
10 1jce_A ROD shape-determining p 100.0 4.9E-35 1.7E-39 277.7 17.0 236 2-304 79-327 (344)
11 3h1q_A Ethanolamine utilizatio 99.9 1.6E-26 5.6E-31 211.8 17.5 197 2-300 76-272 (272)
12 4a2a_A Cell division protein F 99.9 2.4E-25 8.3E-30 215.3 19.1 215 33-303 169-394 (419)
13 2fsj_A Hypothetical protein TA 99.9 6E-26 2E-30 214.9 9.7 221 1-301 103-343 (346)
14 2ych_A Competence protein PILM 99.9 7.2E-24 2.5E-28 203.2 13.3 206 6-247 107-332 (377)
15 2fxu_A Alpha-actin-1, actin, a 99.9 3.5E-22 1.2E-26 191.3 15.5 228 19-301 101-348 (375)
16 1k8k_A ARP3, actin-like protei 99.9 1.2E-21 4.1E-26 190.3 16.2 251 18-301 107-386 (418)
17 2zgy_A Plasmid segregation pro 99.8 7E-20 2.4E-24 171.6 11.2 206 19-300 96-319 (320)
18 3js6_A Uncharacterized PARM pr 99.7 5E-17 1.7E-21 153.8 8.1 210 20-305 115-339 (355)
19 1k8k_B ARP2, actin-like protei 99.7 4.6E-17 1.6E-21 156.6 5.5 232 19-301 105-363 (394)
20 4ehu_A Activator of 2-hydroxyi 99.6 5.7E-15 2E-19 135.1 12.9 185 47-305 72-257 (276)
21 2d0o_A DIOL dehydratase-reacti 99.6 1.3E-15 4.3E-20 146.2 8.7 206 30-301 366-603 (610)
22 1nbw_A Glycerol dehydratase re 99.6 1.4E-15 4.6E-20 146.5 7.3 203 33-301 371-605 (607)
23 4apw_A ALP12; actin-like prote 99.6 2E-15 6.8E-20 141.6 6.3 203 19-303 106-325 (329)
24 3dwl_A Actin-related protein 3 99.4 2.7E-13 9.4E-18 131.0 7.2 245 19-301 124-395 (427)
25 3qb0_A Actin-related protein 4 99.3 1.2E-11 4.2E-16 120.9 9.8 93 20-127 116-209 (498)
26 4fo0_A Actin-related protein 8 99.0 2.4E-09 8.2E-14 108.2 15.4 102 12-128 187-294 (593)
27 1hux_A Activator of (R)-2-hydr 98.6 7E-07 2.4E-11 80.9 13.8 72 195-303 186-257 (270)
28 4am6_A Actin-like protein ARP8 98.4 8E-07 2.7E-11 88.2 8.6 96 19-128 222-318 (655)
29 2i7n_A Pantothenate kinase 1; 97.7 0.00037 1.3E-08 64.9 13.1 52 222-300 306-358 (360)
30 2ews_A Pantothenate kinase; PA 97.7 0.00045 1.5E-08 62.5 13.2 49 222-300 237-286 (287)
31 3l0q_A Xylulose kinase; xlylul 96.6 0.0048 1.6E-07 61.4 8.3 85 188-306 409-493 (554)
32 2itm_A Xylulose kinase, xylulo 96.5 0.0038 1.3E-07 61.1 7.0 76 197-305 362-437 (484)
33 1t6c_A Exopolyphosphatase; alp 96.5 0.01 3.6E-07 54.4 9.2 78 34-121 100-177 (315)
34 3hz6_A Xylulokinase; xylulose, 96.4 0.0068 2.3E-07 59.7 8.0 80 189-306 375-454 (511)
35 2zf5_O Glycerol kinase; hypert 96.4 0.0058 2E-07 59.9 7.5 74 197-305 370-443 (497)
36 3ll3_A Gluconate kinase; xylul 96.3 0.0088 3E-07 58.8 7.9 81 189-306 364-444 (504)
37 4bc3_A Xylulose kinase; transf 96.2 0.0081 2.8E-07 59.5 7.6 78 194-305 407-484 (538)
38 3i8b_A Xylulose kinase; strain 96.1 0.0076 2.6E-07 59.4 6.7 72 197-305 400-474 (515)
39 3g25_A Glycerol kinase; IDP007 96.0 0.0093 3.2E-07 58.6 6.4 52 221-306 404-455 (501)
40 3ifr_A Carbohydrate kinase, FG 95.9 0.0079 2.7E-07 59.2 5.6 51 221-305 400-450 (508)
41 2dpn_A Glycerol kinase; thermu 95.9 0.014 4.8E-07 57.1 7.2 74 198-305 374-448 (495)
42 3ezw_A Glycerol kinase; glycer 95.9 0.018 6.2E-07 56.8 8.1 52 221-306 402-453 (526)
43 3jvp_A Ribulokinase; PSI-II, N 95.8 0.011 3.6E-07 59.2 6.2 80 189-305 410-490 (572)
44 2p3r_A Glycerol kinase; glycer 95.8 0.01 3.4E-07 58.4 5.7 52 221-306 401-452 (510)
45 3h3n_X Glycerol kinase; ATP-bi 95.7 0.012 4.2E-07 57.7 6.1 52 221-306 403-454 (506)
46 4e1j_A Glycerol kinase; struct 95.7 0.0098 3.3E-07 58.7 5.4 52 221-306 425-476 (520)
47 2w40_A Glycerol kinase, putati 95.4 0.016 5.5E-07 56.9 5.8 50 222-305 407-457 (503)
48 2d4w_A Glycerol kinase; alpha 95.4 0.036 1.2E-06 54.4 8.3 51 221-305 403-453 (504)
49 3mdq_A Exopolyphosphatase; str 95.3 0.03 1E-06 51.4 6.9 78 34-120 92-169 (315)
50 2pi2_A Replication protein A 3 95.3 0.003 1E-07 56.8 0.0 46 333-379 223-268 (270)
51 2uyt_A Rhamnulokinase; rhamnos 94.9 0.032 1.1E-06 54.5 6.1 50 221-305 393-442 (489)
52 3vgl_A Glucokinase; ROK family 94.7 1.2 4.2E-05 40.4 16.1 83 3-95 41-140 (321)
53 3r8e_A Hypothetical sugar kina 94.5 0.3 1E-05 44.6 11.4 84 2-95 59-162 (321)
54 4db3_A Glcnac kinase, N-acetyl 94.1 2.4 8.2E-05 38.6 16.5 55 222-300 270-324 (327)
55 1u6z_A Exopolyphosphatase; alp 92.8 0.22 7.5E-06 48.8 7.5 75 36-121 101-176 (513)
56 3cer_A Possible exopolyphospha 92.8 0.12 4.2E-06 47.8 5.4 81 35-121 106-191 (343)
57 3ven_A O-carbamoyltransferase 92.4 4.6 0.00016 39.8 16.3 80 190-306 280-361 (576)
58 2ivn_A O-sialoglycoprotein end 92.3 3.9 0.00013 37.3 14.9 39 203-246 231-269 (330)
59 3hi0_A Putative exopolyphospha 91.5 0.27 9.4E-06 48.1 6.4 76 34-120 103-178 (508)
60 3h6e_A Carbohydrate kinase, FG 91.4 0.16 5.5E-06 49.4 4.6 70 195-302 363-435 (482)
61 2ch5_A NAGK protein; transfera 89.6 12 0.0004 34.0 19.6 46 17-62 70-118 (347)
62 1q5l_A Chaperone protein DNAK; 89.1 0.14 4.8E-06 40.6 1.7 42 311-374 14-61 (135)
63 3en9_A Glycoprotease, O-sialog 87.9 7 0.00024 38.3 13.4 193 17-247 72-274 (540)
64 3vov_A Glucokinase, hexokinase 87.3 16 0.00054 32.6 18.1 70 15-94 55-141 (302)
65 2ap1_A Putative regulator prot 87.2 5.6 0.00019 36.0 11.6 68 18-95 81-164 (327)
66 4g9i_A Hydrogenase maturation 87.0 1.3 4.5E-05 45.4 7.7 57 222-305 706-763 (772)
67 3eno_A Putative O-sialoglycopr 86.0 1.4 4.8E-05 40.4 6.7 73 201-305 234-306 (334)
68 3vth_A Hydrogenase maturation 85.8 1.7 5.7E-05 44.6 7.6 57 222-305 694-750 (761)
69 3aap_A Ectonucleoside triphosp 85.2 1.3 4.3E-05 41.1 6.0 64 31-95 86-158 (353)
70 3qbx_A Anhydro-N-acetylmuramic 84.0 2.6 8.8E-05 39.1 7.4 46 199-247 264-309 (371)
71 3n8e_A Stress-70 protein, mito 82.7 0.42 1.4E-05 39.9 1.4 34 312-350 18-51 (182)
72 3ttc_A HYPF, transcriptional r 82.2 2.9 9.9E-05 42.0 7.4 53 221-302 599-651 (657)
73 3cqy_A Anhydro-N-acetylmuramic 78.6 4.1 0.00014 37.7 6.7 49 195-247 267-315 (370)
74 3bex_A Type III pantothenate k 77.7 14 0.00047 32.1 9.7 44 190-234 180-223 (249)
75 4e81_A Chaperone protein DNAK; 77.4 0.22 7.4E-06 43.0 -2.1 32 314-350 1-32 (219)
76 4htl_A Beta-glucoside kinase; 76.9 6.4 0.00022 35.2 7.5 54 222-302 238-291 (297)
77 3cet_A Conserved archaeal prot 76.6 1.9 6.4E-05 39.4 3.7 18 78-95 128-145 (334)
78 2e1z_A Propionate kinase; TDCD 74.4 39 0.0013 31.6 12.1 44 199-246 312-356 (415)
79 3cj1_A Ectonucleoside triphosp 74.3 5.5 0.00019 38.2 6.5 49 47-95 150-208 (456)
80 2e2o_A Hexokinase; acetate and 73.0 49 0.0017 29.1 22.3 73 3-88 45-118 (299)
81 2qm1_A Glucokinase; alpha-beta 72.6 6.5 0.00022 35.4 6.4 45 44-95 108-152 (326)
82 2gup_A ROK family protein; sug 72.2 6.7 0.00023 34.7 6.4 70 16-94 53-135 (292)
83 3zx3_A Ectonucleoside triphosp 71.3 6.1 0.00021 37.7 6.0 49 47-95 150-199 (452)
84 2aa4_A Mannac kinase, putative 67.7 8.4 0.00029 34.0 6.0 54 222-301 234-287 (289)
85 3o8m_A Hexokinase; rnaseh-like 66.5 23 0.0008 34.0 9.0 53 75-127 78-136 (485)
86 3khy_A Propionate kinase; csgi 64.4 31 0.0011 31.9 9.0 45 198-246 294-339 (384)
87 1saz_A Probable butyrate kinas 59.7 22 0.00074 33.0 7.3 52 221-301 295-347 (381)
88 2yhx_A Hexokinase B; transfera 58.5 54 0.0019 31.2 10.0 53 75-127 59-117 (457)
89 2hoe_A N-acetylglucosamine kin 58.2 22 0.00075 32.8 7.1 55 222-301 315-370 (380)
90 3dob_A Heat shock 70 kDa prote 55.5 1.3 4.4E-05 35.7 -1.7 30 316-350 2-31 (152)
91 3h0x_A 78 kDa glucose-regulate 54.2 1.4 4.7E-05 35.5 -1.7 30 316-350 2-31 (152)
92 3dqg_A Heat shock 70 kDa prote 52.9 1.7 5.9E-05 34.9 -1.3 30 316-350 2-31 (151)
93 3zyy_X Iron-sulfur cluster bin 50.8 21 0.00072 35.5 5.8 57 185-242 499-555 (631)
94 1z6r_A MLC protein; transcript 50.7 16 0.00054 34.1 4.8 58 222-302 335-393 (406)
95 3htv_A D-allose kinase, alloki 49.3 52 0.0018 29.3 7.9 37 44-87 107-143 (310)
96 1zc6_A Probable N-acetylglucos 47.8 8.5 0.00029 34.4 2.3 56 19-89 77-134 (305)
97 3sk3_A Acetate kinase, acetoki 47.5 92 0.0031 29.2 9.3 48 196-246 317-365 (415)
98 4am6_A Actin-like protein ARP8 46.6 6.8 0.00023 39.1 1.6 25 222-246 501-525 (655)
99 3epq_A Putative fructokinase; 46.6 36 0.0012 30.2 6.4 44 44-94 97-140 (302)
100 1msz_A DNA-binding protein smu 45.0 16 0.00055 26.0 2.9 42 5-48 20-61 (86)
101 1zbs_A Hypothetical protein PG 43.5 6.7 0.00023 34.9 0.9 46 16-62 58-105 (291)
102 1hnj_A Beta-ketoacyl-acyl carr 40.8 29 0.00099 30.9 4.8 50 195-247 211-260 (317)
103 1kae_A HDH, histidinol dehydro 40.4 99 0.0034 29.0 8.2 73 18-95 154-243 (434)
104 1bdg_A Hexokinase; phosphotran 40.1 1.3E+02 0.0044 28.5 9.3 24 75-98 66-89 (451)
105 2q2r_A Glucokinase 1, putative 37.6 47 0.0016 30.4 5.8 17 45-61 128-144 (373)
106 3hm8_A Hexokinase-3; glucose, 37.3 1.2E+02 0.0042 28.6 8.6 29 75-104 57-85 (445)
107 1z05_A Transcriptional regulat 35.6 37 0.0013 31.9 4.8 25 222-246 358-383 (429)
108 3zyy_X Iron-sulfur cluster bin 34.9 1E+02 0.0034 30.7 7.8 38 200-237 268-305 (631)
109 1ub7_A 3-oxoacyl-[acyl-carrier 34.6 39 0.0013 30.1 4.6 47 197-246 215-261 (322)
110 2ebd_A 3-oxoacyl-[acyl-carrier 34.1 43 0.0015 29.5 4.8 45 199-246 207-251 (309)
111 2yhw_A Bifunctional UDP-N-acet 33.3 1.2E+02 0.0041 27.1 7.7 45 44-95 131-175 (343)
112 2ap1_A Putative regulator prot 32.6 1.3E+02 0.0044 26.7 7.8 51 76-127 23-73 (327)
113 2iir_A Acetate kinase; transfe 30.6 52 0.0018 30.7 4.7 47 196-246 301-348 (403)
114 4h0p_A Acetate kinase; askha ( 30.3 44 0.0015 31.5 4.1 51 196-246 325-378 (438)
115 3f9m_A Glucokinase; hexokinase 30.3 54 0.0018 31.4 4.8 25 75-99 75-99 (470)
116 1mzj_A Beta-ketoacylsynthase I 30.1 51 0.0017 29.6 4.6 47 197-246 226-272 (339)
117 1zow_A 3-oxoacyl-[acyl-carrier 29.0 60 0.0021 28.6 4.9 47 197-246 207-253 (313)
118 2qm1_A Glucokinase; alpha-beta 28.6 1.4E+02 0.0048 26.3 7.3 49 77-125 6-54 (326)
119 3eno_A Putative O-sialoglycopr 28.6 86 0.0029 28.3 5.8 45 198-242 50-94 (334)
120 4db3_A Glcnac kinase, N-acetyl 28.5 1.6E+02 0.0055 26.1 7.7 28 76-103 23-50 (327)
121 4ijn_A Acetate kinase, acetoki 28.5 47 0.0016 30.9 4.0 47 196-246 302-349 (398)
122 2op6_A Heat shock 70 kDa prote 28.4 6.1 0.00021 31.5 -1.8 30 316-350 2-31 (152)
123 3lfh_A Manxa, phosphotransfera 28.3 2.1E+02 0.0071 22.2 7.6 40 4-43 16-56 (144)
124 1g99_A Acetate kinase; alpha/b 26.9 52 0.0018 30.8 4.0 47 196-246 301-348 (408)
125 2ivn_A O-sialoglycoprotein end 26.7 97 0.0033 27.8 5.8 43 198-240 45-87 (330)
126 2aa4_A Mannac kinase, putative 26.0 1.3E+02 0.0045 25.9 6.5 26 78-103 2-27 (289)
127 1zc6_A Probable N-acetylglucos 25.6 2E+02 0.0068 25.1 7.7 51 77-127 11-62 (305)
128 2x3e_A 3-oxoacyl-[acyl-carrier 24.7 53 0.0018 29.4 3.6 47 197-246 219-265 (331)
129 2pfu_A Biopolymer transport EX 24.3 1.6E+02 0.0056 20.6 5.7 51 6-56 44-95 (99)
130 1zxo_A Conserved hypothetical 24.2 8.4 0.00029 34.2 -1.9 45 17-62 57-103 (291)
131 4dfe_A 3-oxoacyl-[acyl-carrier 24.0 87 0.003 28.1 5.0 48 196-246 228-275 (333)
132 2a6a_A Hypothetical protein TM 23.9 92 0.0032 26.2 4.8 44 199-242 44-87 (218)
133 3cer_A Possible exopolyphospha 23.9 3.9E+02 0.013 24.0 9.3 40 75-114 14-55 (343)
134 4gic_A HDH, histidinol dehydro 23.8 42 0.0014 31.4 2.7 48 18-66 160-208 (423)
135 2hoe_A N-acetylglucosamine kin 23.7 2.6E+02 0.0091 25.3 8.4 29 76-104 86-114 (380)
136 1zbs_A Hypothetical protein PG 23.5 1.1E+02 0.0038 26.7 5.5 48 79-127 2-51 (291)
137 3r6m_A YEAZ, resuscitation pro 22.6 86 0.003 26.3 4.3 43 201-243 36-78 (213)
138 2gel_A Putative GRAM negative 22.5 93 0.0032 26.4 4.6 39 202-240 36-74 (231)
139 2vg3_A Undecaprenyl pyrophosph 22.5 1.8E+02 0.0063 25.6 6.5 43 190-234 186-239 (284)
140 1sz2_A Glucokinase, glucose ki 22.4 4E+02 0.014 23.4 17.1 71 15-89 64-151 (332)
141 3mtq_A Putative phosphoenolpyr 22.0 1.6E+02 0.0055 23.3 5.6 14 76-89 78-91 (159)
142 3ist_A Glutamate racemase; str 22.0 1.1E+02 0.0039 26.6 5.1 25 220-246 177-201 (269)
143 3uhf_A Glutamate racemase; str 21.8 80 0.0027 27.7 4.0 24 221-246 196-219 (274)
144 2vg0_A Short-chain Z-isoprenyl 21.5 2E+02 0.0069 24.3 6.4 44 190-235 132-190 (227)
145 1ji0_A ABC transporter; ATP bi 21.4 53 0.0018 28.0 2.8 33 25-57 136-168 (240)
146 3tif_A Uncharacterized ABC tra 21.4 39 0.0013 28.8 1.9 34 25-58 142-175 (235)
147 3sgv_B Undecaprenyl pyrophosph 21.2 2E+02 0.0067 24.9 6.3 59 159-234 132-201 (253)
148 1ted_A PKS18; thiolase fold, s 20.8 71 0.0024 29.4 3.8 46 198-246 283-328 (393)
149 3lwd_A 6-phosphogluconolactona 20.7 1.1E+02 0.0037 25.9 4.6 47 192-243 9-55 (226)
150 1u00_A HSC66, chaperone protei 20.6 9.5 0.00032 32.7 -2.2 26 317-345 1-26 (227)
151 3s21_A 3-oxoacyl-[ACP] synthas 20.6 1.1E+02 0.0037 27.6 4.9 50 194-246 238-287 (345)
152 3r9p_A ACKA; ssgcid, seattle s 20.1 85 0.0029 29.1 3.9 47 196-246 293-340 (391)
153 3nwp_A 6-phosphogluconolactona 20.0 1.5E+02 0.0053 25.0 5.5 46 190-243 14-59 (233)
No 1
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=100.00 E-value=1.3e-53 Score=432.18 Aligned_cols=289 Identities=55% Similarity=0.863 Sum_probs=260.9
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.++.++|.++.++|||||++|++.||+++++|++.||++++++++||+|||++|+..... .+..++
T Consensus 118 ~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~AGl~v~~li~EP~AAAlaygl~~~~------~~~~vl 191 (605)
T 4b9q_A 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGT------GNRTIA 191 (605)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHTTSCC------SSEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCcHHHHHHHhhhhccC------CCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999877541 468999
Q ss_pred EEEcCCceeEEEEEEEeC----CeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhh
Q psy4399 81 IFDLGGGTFDVSILTIED----GIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 156 (379)
Q Consensus 81 VvD~GggT~disv~~~~~----~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 156 (379)
|||+||||||+|++++.+ +.++++++.++..+||++||+.|.+++.+++.++++.+...+++.+.+|+.+||++|+
T Consensus 192 V~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~ 271 (605)
T 4b9q_A 192 VYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKI 271 (605)
T ss_dssp EEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHH
Confidence 999999999999999987 8999999999999999999999999999999999998888899999999999999999
Q ss_pred hcCCCceeEEEeecccCC----cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC
Q psy4399 157 TLSSSTQASIEIDSLFEG----VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 232 (379)
Q Consensus 157 ~ls~~~~~~~~i~~~~~~----~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s 232 (379)
.||......+.++.+..+ .++...++ |++|+++++++++++..+++++|+++++...+|+.|+||||+|
T Consensus 272 ~Ls~~~~~~i~~~~~~~~~~g~~~~~~~it-------r~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~s 344 (605)
T 4b9q_A 272 ELSSAQQTDVNLPYITADATGPKHMNIKVT-------RAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQT 344 (605)
T ss_dssp HTTTCSEEEEEEEEEEECSSSEEEEEEEEE-------HHHHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGG
T ss_pred hcCcCCCeEEEEeeeccCCCCCeeEEEEEe-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCcc
Confidence 999999888887765433 34444455 9999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcc
Q psy4399 233 RIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQ 312 (379)
Q Consensus 233 r~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~ 312 (379)
++|+|++.|++.|+ .++..+.||++|||+|||++|+.++|. .+
T Consensus 345 riP~v~~~l~~~fg---------------------------------~~~~~~~nPdeaVA~GAai~a~~l~~~----~~ 387 (605)
T 4b9q_A 345 RMPMVQKKVAEFFG---------------------------------KEPRKDVNPDEAVAIGAAVQGGVLTGD----VK 387 (605)
T ss_dssp GSHHHHHHHHHHHT---------------------------------SCCCSSSCTTTHHHHHHHHHHHHHHTS----SC
T ss_pred CchHHHHHHHHHhc---------------------------------cCcCCCcChhHHHHHhHHHHHHHhcCC----CC
Confidence 99999999999997 467778899999999999999999985 57
Q ss_pred cceeEeecccccccccCCCCccccc------ccccccccccccc
Q psy4399 313 DLLLLDVTPQLAWRSFKNDSYGVDI------DTIMNNLAIKIPL 350 (379)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~ip~ 350 (379)
+++++||+|+ +||++. ..|++|+ ++|.
T Consensus 388 ~~~l~dv~p~---------slgie~~~g~~~~ii~rnt--~iP~ 420 (605)
T 4b9q_A 388 DVLLLDVTPL---------SLGIETMGGVMTTLIAKNT--TIPT 420 (605)
T ss_dssp SEEEECBCSS---------CEEEEETTTEEEEEECTTC--BSSE
T ss_pred ceEEEeeeee---------EEEEEEcCCEEEEEEeCCC--cCCc
Confidence 8999999999 666553 3555666 4554
No 2
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=100.00 E-value=1.9e-53 Score=427.11 Aligned_cols=308 Identities=85% Similarity=1.215 Sum_probs=274.7
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.++.++|.++.++|||||++|++.||+++++|++.||++++++++||+|||++|+.+.... .+..++
T Consensus 122 ~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~~~AGl~~~~li~EP~AAAlay~~~~~~~-----~~~~vl 196 (554)
T 1yuw_A 122 MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVG-----AERNVL 196 (554)
T ss_dssp HHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTCSTTCS-----SCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEeCcHHHHHHHHHhhccCC-----CCcEEE
Confidence 589999999999999999999999999999999999999999999999999999999999998865421 468899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.++..+||++||+.|.+++.+++.++++.++..+++.+.+|+.+||++|+.|+.
T Consensus 197 V~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~ 276 (554)
T 1yuw_A 197 IFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSS 276 (554)
T ss_dssp EEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999988888888899999999999999999999
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
.....+.++.+.+|.++...++ |++|+++++++++++...++++|+++++.+.+|+.|+|+||+|++|+|++.
T Consensus 277 ~~~~~i~i~~~~~g~~~~~~lt-------r~~~e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~ 349 (554)
T 1yuw_A 277 STQASIEIDSLYEGIDFYTSIT-------RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKL 349 (554)
T ss_dssp SSEEEEEETTCSSSCCEEEEEE-------HHHHHHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHH
T ss_pred CceEEEEEeeccCCceEEEEEE-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHH
Confidence 9888899887777877777777 999999999999999999999999999988999999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcccceeEeec
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 320 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~~~~ 320 (379)
|++.|++ .++..+.||++|||+|||++|+.++|...+.+++++++|++
T Consensus 350 l~~~f~~--------------------------------~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~ 397 (554)
T 1yuw_A 350 LQDFFNG--------------------------------KELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVT 397 (554)
T ss_dssp HHHHTTT--------------------------------CCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCBC
T ss_pred HHHHcCC--------------------------------CccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEee
Confidence 9999975 56677889999999999999999999755667899999999
Q ss_pred ccccccccCCCCccccc------ccccccccccccccccchhhhhhhhcCceeeeecCCc
Q psy4399 321 PQLAWRSFKNDSYGVDI------DTIMNNLAIKIPLQQVKNTVEELINEGHIYTTIDDNH 374 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~~------~~i~~~~~~~ip~~~~~~~~~~~~~~~~~~~t~~~~~ 374 (379)
|+ +||+++ ..|+.|. ++|.. +...|+|..|||
T Consensus 398 p~---------slgi~~~~g~~~~li~r~t--~iP~~-----------~~~~f~~~~d~q 435 (554)
T 1yuw_A 398 PL---------SLGIETAGGVMTVLIKRNT--TIPTK-----------QTQTFTTYSDNQ 435 (554)
T ss_dssp SS---------CEEEEETTTEEEEEECTTC--BSSEE-----------EEEEEEESSTTC
T ss_pred ee---------EEEEEecCceEEEEEECCC--ccCce-----------eEEEeeeccCCC
Confidence 99 666654 2444554 45542 334466666654
No 3
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=100.00 E-value=1.9e-53 Score=434.30 Aligned_cols=281 Identities=35% Similarity=0.582 Sum_probs=257.3
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.|+.++|.++.++|||||++|++.||+++++|++.||++++++++||+|||++|+......+.....+.+++
T Consensus 121 ~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vl 200 (675)
T 3d2f_A 121 MFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVA 200 (675)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999876421100012468899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||+|++++.++.++++++.++..+||++||+.|++++.+++.++++.++..+++.+.+|+.+||++|+.||.
T Consensus 201 V~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~ 280 (675)
T 3d2f_A 201 FVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSA 280 (675)
T ss_dssp EEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999988888888999999999999999999998
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
.....+.++.+.+|.++...++ |++|+++++++++++..+++++|+++++.+.+|+.|+|+||+||+|+|++.
T Consensus 281 ~~~~~i~i~~~~~g~~~~~~it-------r~~fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~ 353 (675)
T 3d2f_A 281 NTNAPFSVESVMNDVDVSSQLS-------REELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQS 353 (675)
T ss_dssp CSEEEEEETTSSSSCCEEEEEE-------HHHHHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHH
T ss_pred CCceEEEEeeeccCceEEEEEe-------HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHH
Confidence 8888888887777877777777 999999999999999999999999999998999999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcccceeEeec
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 320 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~~~~ 320 (379)
|++.|+ .++..+.||++|||+|||++|+.|++ .+.+++++++||+
T Consensus 354 l~~~fg---------------------------------~~~~~~~nPdeaVA~GAa~~a~~ls~--~~~v~~~~l~Dv~ 398 (675)
T 3d2f_A 354 ISEAFG---------------------------------KPLSTTLNQDEAIAKGAAFICAIHSP--TLRVRPFKFEDIH 398 (675)
T ss_dssp HHHHHT---------------------------------SCEECCSCTTTHHHHHHHHHHHHTCS--SCCCCCCEEEEEE
T ss_pred HHHhcC---------------------------------CCccccCCcchHHHHHHHHHHHHhCC--CCcccceEEEeee
Confidence 999997 35667889999999999999999998 4567899999999
Q ss_pred ccc
Q psy4399 321 PQL 323 (379)
Q Consensus 321 ~~~ 323 (379)
|+.
T Consensus 399 p~s 401 (675)
T 3d2f_A 399 PYS 401 (675)
T ss_dssp CSC
T ss_pred ecc
Confidence 994
No 4
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=100.00 E-value=9.3e-53 Score=425.98 Aligned_cols=289 Identities=55% Similarity=0.865 Sum_probs=257.9
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.|+.++|.++.++|||||++|++.||+++++|++.||++++++++||+|||++|+.+... .+.+++
T Consensus 118 ~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~AGl~v~~li~EP~AAAlay~l~~~~------~~~~vl 191 (605)
T 2kho_A 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGT------GNRTIA 191 (605)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTTTSSS------SEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecCHHHHHHHhhhcccC------CCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999876431 468899
Q ss_pred EEEcCCceeEEEEEEEe----CCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhh
Q psy4399 81 IFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 156 (379)
Q Consensus 81 VvD~GggT~disv~~~~----~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 156 (379)
|||+||||||+|++++. ++.++++++.++..+||++||+.|++++.+++.++++.++..+++.+.+|+.+||++|+
T Consensus 192 V~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~ 271 (605)
T 2kho_A 192 VYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKI 271 (605)
T ss_dssp EEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHH
Confidence 99999999999999998 78999999999999999999999999999999998888888889999999999999999
Q ss_pred hcCCCceeEEEeecccCC----cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC
Q psy4399 157 TLSSSTQASIEIDSLFEG----VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 232 (379)
Q Consensus 157 ~ls~~~~~~~~i~~~~~~----~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s 232 (379)
.||......+.++.+.++ .++... ++|++|+++++|+++++..+++++|+++++...+|+.|+|+||+|
T Consensus 272 ~ls~~~~~~i~l~~~~~~~~G~~~~~~~-------itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~s 344 (605)
T 2kho_A 272 ELSSAQQTDVNLPYITADATGPKHMNIK-------VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQT 344 (605)
T ss_dssp HTTSSSEEEEEEEEEEEETTEEEEEEEE-------EEHHHHHTTCCSTTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGG
T ss_pred HcCCCCceEEEecccccCCCCceEEEEE-------EeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEECCcc
Confidence 999988888887754432 233334 449999999999999999999999999999889999999999999
Q ss_pred ChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhcc
Q psy4399 233 RIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQ 312 (379)
Q Consensus 233 r~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~ 312 (379)
++|+|++.|++.|+ .++....||++|||+|||++|+.|+|+ ++
T Consensus 345 rip~v~~~l~~~fg---------------------------------~~~~~~~npd~aVA~GAa~~a~~l~~~----~~ 387 (605)
T 2kho_A 345 RMPMVQKKVAEFFG---------------------------------KEPRKDVNPDEAVAIGAAVQGGVLTGD----VK 387 (605)
T ss_dssp GSHHHHHHHHHHHS---------------------------------SCCBCSSCTTTHHHHHHHHHHTTTTTS----CC
T ss_pred cChHHHHHHHHhcC---------------------------------CCcCcCCCcchHHHHHHHHHHHHhcCC----cc
Confidence 99999999999996 356778899999999999999999985 57
Q ss_pred cceeEeecccccccccCCCCccccc------ccccccccccccc
Q psy4399 313 DLLLLDVTPQLAWRSFKNDSYGVDI------DTIMNNLAIKIPL 350 (379)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~ip~ 350 (379)
+++++|++|+ +||++. ..|++|. ++|.
T Consensus 388 ~~~l~dv~p~---------slgi~~~~g~~~~li~r~t--~iP~ 420 (605)
T 2kho_A 388 DVLLLDVTPL---------SLGIETMGGVMTTLIAKNT--TIPT 420 (605)
T ss_dssp CCCCSBCCCC---------CEEEEETTTEEEEEECTTB--CSSE
T ss_pred CceEEeeeee---------eccccccCCceEEEEeccc--ccCc
Confidence 8999999999 566543 3455665 4554
No 5
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=100.00 E-value=5.4e-51 Score=406.10 Aligned_cols=271 Identities=55% Similarity=0.885 Sum_probs=248.1
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.++.+++.++.++|||||++|+..||++|++|++.||++++++++||+|||++|+.+.. .+.+++
T Consensus 92 ~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~AGl~~~~li~Ep~AAAlay~~~~~-------~~~~vl 164 (509)
T 2v7y_A 92 IILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKE-------EDQTIL 164 (509)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTGGGS-------CSEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHhhccC-------CCCEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999988753 578999
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||++++++.++.++++++.++..+||++||+.|.+++.+++.++++.++..+++.+.+|+.+||++|+.|+.
T Consensus 165 V~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~ 244 (509)
T 2v7y_A 165 VYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSG 244 (509)
T ss_dssp EEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTT
T ss_pred EEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999899999999999999999999999999999999888888888889999999999999999999
Q ss_pred CceeEEEeecccC---C-cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH
Q psy4399 161 STQASIEIDSLFE---G-VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236 (379)
Q Consensus 161 ~~~~~~~i~~~~~---~-~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~ 236 (379)
.....+.++...+ | .++... ++|++|+++++|+++++.+.++++|+++++...+++.|+|+||+|++|+
T Consensus 245 ~~~~~i~l~~~~~~~~G~~~~~~~-------itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~s~~p~ 317 (509)
T 2v7y_A 245 VTQTQISLPFISANENGPLHLEMT-------LTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPA 317 (509)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEE-------EEHHHHHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGGCHH
T ss_pred CCcEEEEEeccccCCCCCeeEEEE-------EEHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCcccChH
Confidence 8888888775443 1 223334 4599999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCCCchhccccee
Q psy4399 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 316 (379)
Q Consensus 237 v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~~~~~~~~~~~ 316 (379)
|+++|++.|+ .++....||++|||+|||++|+.++|+ ++++++
T Consensus 318 v~~~l~~~f~---------------------------------~~~~~~~~p~~aVa~Gaa~~a~~l~~~----~~~~~~ 360 (509)
T 2v7y_A 318 VQEAIKRELG---------------------------------KEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVL 360 (509)
T ss_dssp HHHHHHHHHS---------------------------------SCCBCCSCTTTHHHHHHHHHHHHHHTC----CCCCCC
T ss_pred HHHHHHHHhC---------------------------------CCcCcCCCchhhhHhhHHHHHHHhcCC----ccCceE
Confidence 9999999996 356678899999999999999999985 578999
Q ss_pred Eeeccc
Q psy4399 317 LDVTPQ 322 (379)
Q Consensus 317 ~~~~~~ 322 (379)
+|++|+
T Consensus 361 ~dv~p~ 366 (509)
T 2v7y_A 361 LDVTPL 366 (509)
T ss_dssp CCBCSS
T ss_pred EEeecc
Confidence 999999
No 6
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=100.00 E-value=3.2e-47 Score=369.28 Aligned_cols=263 Identities=88% Similarity=1.247 Sum_probs=243.9
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.++.+++.++.++|||||++|+..||++|++|++.||++++.+++||+|||++|+...... ...+..++
T Consensus 141 ~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~---~~~~~~vl 217 (404)
T 3i33_A 141 MVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGC---AGGEKNVL 217 (404)
T ss_dssp HHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHHHHTCEEEEEEEHHHHHHHHTTTTSSCS---SSSCCEEE
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHhhcccc---cCCCceEE
Confidence 589999999999999999999999999999999999999999999999999999999999998765421 11468899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||++++++.++.+++++..++..+||++||+.|.+++.+++.++++.+...+++.+.+|+.+||++|+.|+.
T Consensus 218 V~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~ 297 (404)
T 3i33_A 218 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSS 297 (404)
T ss_dssp EEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTT
T ss_pred EEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999998888888899999999999999999999
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
.....+.++...++.++...++ |++|++++++.++++.+.+.++|++++....+++.|+|+||+|++|+|++.
T Consensus 298 ~~~~~~~~~~~~~g~~~~~~i~-------r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~ 370 (404)
T 3i33_A 298 STQASIEIDSLYEGVDFYTSIT-------RARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKL 370 (404)
T ss_dssp SSEEEEEEEEEETTEEEEEEEE-------HHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHH
T ss_pred CcceEEEEeeccCCceeEEEEc-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHH
Confidence 9999998887778877777777 999999999999999999999999999988899999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
|++.|++ .++..+.||++|||.|||++|++|+|
T Consensus 371 l~~~~~~--------------------------------~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 371 LQDFFNG--------------------------------KELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHTTT--------------------------------CCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHcCC--------------------------------CCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 9999964 56778889999999999999999987
No 7
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=100.00 E-value=5.7e-47 Score=368.10 Aligned_cols=269 Identities=32% Similarity=0.564 Sum_probs=239.7
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
++|++|++.++.+++.++.++|||||++|+..||++|++|++.||++++.+++||+|||++|+..... ..++..++
T Consensus 133 ~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~----~~~~~~vl 208 (409)
T 4gni_A 133 RYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAYDARPEA----TISDKIIV 208 (409)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTC----------CCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHHhccccc----CCCCCEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999886421 11678999
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhc--cCccccHHHHHHHHHHHHHHhhhc
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK--KDLTTNKRALRRLRTACERAKRTL 158 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~l 158 (379)
|||+||||||++++++.++.++++++.++..+||++||+.|.+++.+++..+++ .+...+++.+.+|+.+||++|+.|
T Consensus 209 v~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~l 288 (409)
T 4gni_A 209 VADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRAL 288 (409)
T ss_dssp EEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998889999999999999999999998887 777788999999999999999999
Q ss_pred CCCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHH
Q psy4399 159 SSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 238 (379)
Q Consensus 159 s~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~ 238 (379)
+......+.++.+.++.++...++ |++|+++++++++++...++++|++++....+++.|+|+||+|++|+|+
T Consensus 289 s~~~~~~i~i~~~~~~~~~~~~it-------r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~ 361 (409)
T 4gni_A 289 SRSTNASFSVESLIDGLDFASTIN-------RLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIA 361 (409)
T ss_dssp HHSSEEEEEEEEEETTEEEEEEEE-------HHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHH
T ss_pred CCCCceEEEeecccCCcceEEEee-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHH
Confidence 999999999988878887777777 9999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 239 KLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 239 ~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
+.|++.|+.. .++..| .......||++|||.|||++|+....
T Consensus 362 ~~l~~~f~~~-~~v~~P------------------------~~~~~~~~p~~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 362 ANFRYIFPES-TRILAP------------------------STDPSALNPSELQARGAALQASLIQE 403 (409)
T ss_dssp HHHHHHSCTT-SEEEST------------------------TTCTTCCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCc-cccccc------------------------cccCCCcCHHHHHHHHHHHHhhhhhh
Confidence 9999999751 000000 01156789999999999999998764
No 8
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=100.00 E-value=4.4e-46 Score=360.09 Aligned_cols=259 Identities=63% Similarity=1.017 Sum_probs=242.2
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
|+|++|++.++.+++.++.++|||||++|+..||+++++|++.||++++.+++||+|||++|+..... .+..++
T Consensus 136 ~~l~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~------~~~~vl 209 (394)
T 3qfu_A 136 MILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYGLDKSD------KEHQII 209 (394)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTTTSCS------SCEEEE
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccCC------CCceEE
Confidence 58999999999999999999999999999999999999999999999999999999999999766431 578899
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC
Q psy4399 81 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 160 (379)
Q Consensus 81 VvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 160 (379)
|||+||||||++++++.++.+++++..++..+||++||+.|.+++.+++.++++.+...+++.+.+|+.+||++|+.|+.
T Consensus 210 V~D~Gggt~dvsv~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~ 289 (394)
T 3qfu_A 210 VYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSS 289 (394)
T ss_dssp EEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEcCCCceeEEEEEEeCCEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
.....+.++...++.++...++ |++|++++++.++++.+.+.++|++++....+++.|+|+||+|++|+|++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~i~-------r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~ 362 (394)
T 3qfu_A 290 QMSTRIEIDSFVDGIDLSETLT-------RAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQL 362 (394)
T ss_dssp CSEEEEEEEEEETTEEEEEEEE-------HHHHHHHHHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHH
T ss_pred CCcEEEEEEeccCCceeEEEEE-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHH
Confidence 9999988887777877777777 999999999999999999999999999988899999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHh
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 304 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~ 304 (379)
|++.|++ .++..+.||++|||.|||++|++|+
T Consensus 363 l~~~~~~--------------------------------~~v~~~~~p~~ava~Gaa~~a~~ls 394 (394)
T 3qfu_A 363 LESYFDG--------------------------------KKASKGINPDEAVAYGAAVQAGVLS 394 (394)
T ss_dssp HHHHTTT--------------------------------CCCBCCSCTTTHHHHHHHHHHHHHC
T ss_pred HHHHcCC--------------------------------CCCCCCcCHHHHHHHHHHHHHHhhC
Confidence 9999954 5677888999999999999999875
No 9
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=100.00 E-value=2.9e-44 Score=346.08 Aligned_cols=258 Identities=55% Similarity=0.867 Sum_probs=229.1
Q ss_pred ChHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEE
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vl 80 (379)
++|++|++.++.+++.++.++|+|||++|+..||+++++|++.||++++.+++||+|||++|+.... .++.+++
T Consensus 118 ~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~------~~~~~~l 191 (383)
T 1dkg_D 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG------TGNRTIA 191 (383)
T ss_dssp HHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC-------CCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHHHhccC------CCCcEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999987643 1468899
Q ss_pred EEEcCCceeEEEEEEEe----CCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhh
Q psy4399 81 IFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 156 (379)
Q Consensus 81 VvD~GggT~disv~~~~----~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 156 (379)
|||+||||||+++++.. ++.++++++.++..+||++||+.|.+++.+++.++++.++..+++.+.+|+..||++|+
T Consensus 192 VvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~ 271 (383)
T 1dkg_D 192 VYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKI 271 (383)
T ss_dssp EEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHH
Confidence 99999999999999987 57788888888889999999999999999999888887877788899999999999999
Q ss_pred hcCCCceeEEEeecccC---C-cceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC
Q psy4399 157 TLSSSTQASIEIDSLFE---G-VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 232 (379)
Q Consensus 157 ~ls~~~~~~~~i~~~~~---~-~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s 232 (379)
.|+......+.++.+.+ | .++. +.++|++|+++++|.++++.+.+.++|+++++...+++.|+|+||+|
T Consensus 272 ~ls~~~~~~i~i~~~~~~~~G~~~~~-------~~it~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~s 344 (383)
T 1dkg_D 272 ELSSAQQTDVNLPYITADATGPKHMN-------IKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQT 344 (383)
T ss_dssp HTTSSSEEEEEEEEEEEETTEEEEEE-------EEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGG
T ss_pred HhCCCCceEEEEecccccCCCCeeEE-------EEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCcc
Confidence 99988877777765432 1 2223 34559999999999999999999999999998888999999999999
Q ss_pred ChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHh
Q psy4399 233 RIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 304 (379)
Q Consensus 233 r~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~ 304 (379)
++|+|++.|++.|+ .++..+.||++|||+|||++|++|+
T Consensus 345 ~~p~l~~~l~~~~~---------------------------------~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 345 RMPMVQKKVAEFFG---------------------------------KEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp GSHHHHHHHHHHHS---------------------------------SCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred ccHHHHHHHHHHhC---------------------------------CCCCCCcChHHHHHHHHHHHHHhhC
Confidence 99999999999997 3566788999999999999998763
No 10
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=100.00 E-value=4.9e-35 Score=277.70 Aligned_cols=236 Identities=24% Similarity=0.341 Sum_probs=185.7
Q ss_pred hHHHHHHHHHH--HcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceE
Q psy4399 2 VLTKMKETAEA--YLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNV 79 (379)
Q Consensus 2 iL~~l~~~a~~--~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~v 79 (379)
+++++.+.+.. .++ ...+|||+|++|+..||+++++|++.||++.+.+++||+|||++|+.... ++.++
T Consensus 79 i~~~~l~~~~~~~~~~--~~~~vitvP~~~~~~~r~~~~~a~~~aG~~~~~li~ep~Aaa~~~~~~~~-------~~~~~ 149 (344)
T 1jce_A 79 MLRYFINKAKGGMNLF--KPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVE-------EPSGN 149 (344)
T ss_dssp HHHHHHHHHHTSCCSC--CCEEEEEECTTCCHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHTTCCTT-------SSSCE
T ss_pred HHHHHHHHHhhccccC--CCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEeccCCHHHHHHhcCCCCC-------CCceE
Confidence 45566655543 133 37899999999999999999999999999999999999999999987543 46789
Q ss_pred EEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcC
Q psy4399 80 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLS 159 (379)
Q Consensus 80 lVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls 159 (379)
+|||+||||||+++++... . . ..++..+||++||+.|.+++.+++. ..+. +..||++|+.++
T Consensus 150 lVvDiGggttdvsv~~~~~--~--~-~~~~~~lGG~~id~~l~~~l~~~~~----~~~~---------~~~ae~~K~~l~ 211 (344)
T 1jce_A 150 MVVDIGGGTTEVAVISLGS--I--V-TWESIRIAGDEMDEAIVQYVRETYR----VAIG---------ERTAERVKIEIG 211 (344)
T ss_dssp EEEEECSSCEEEEEEETTE--E--E-EEEEESCSHHHHHHHHHHHHHHHHC----EECC---------HHHHHHHHHHHC
T ss_pred EEEEeCCCeEEEEEEEcCC--E--E-eeCCCCccChhHHHHHHHHHHHHhC----cccC---------HHHHHHHHHHHh
Confidence 9999999999999998632 2 1 2345789999999999999987653 2211 347999999998
Q ss_pred CCce------eEEEeec--ccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCC--cCCc-CEEEEE
Q psy4399 160 SSTQ------ASIEIDS--LFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQI-HDIVLV 228 (379)
Q Consensus 160 ~~~~------~~~~i~~--~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~--~~~i-~~VvLv 228 (379)
.... ..+.++. +.+|.+....++ |++|+++++|.++++.+.+.++|++++.. .+.+ +.|+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~-------~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~ 284 (344)
T 1jce_A 212 NVFPSKENDELETTVSGIDLSTGLPRKLTLK-------GGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLT 284 (344)
T ss_dssp BCSCCHHHHHCEEEEEEEETTTTEEEEEEEE-------HHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEE
T ss_pred ccCccccCCcceEEEeccccCCCCceeEEEe-------HHHHHHHHHHHHHHHHHHHHHHHHhCCchhccchhhCcEEEE
Confidence 6532 2344432 224444444555 99999999999999999999999987532 1224 689999
Q ss_pred cCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHh
Q psy4399 229 GGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 304 (379)
Q Consensus 229 GG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~ 304 (379)
||+|++|+++++|++.|+. ++....||++|||.||+++|+.++
T Consensus 285 GG~s~~p~l~~~l~~~~~~---------------------------------~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 285 GGGSLLRGLDTLLQKETGI---------------------------------SVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp SGGGCSBTHHHHHHHHHSS---------------------------------CEEECSSTTTHHHHHHHHGGGCHH
T ss_pred CccccchHHHHHHHHHHCC---------------------------------CccccCChHHHHHHHHHHHHhChH
Confidence 9999999999999999973 456678999999999999988554
No 11
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.94 E-value=1.6e-26 Score=211.76 Aligned_cols=197 Identities=21% Similarity=0.358 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 2 iL~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
+|+++++.++...+.++..+++++|+.|...+|+.++++++.+|++...++.||+|++++++.. ..+|
T Consensus 76 ~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~------------~~~v 143 (272)
T 3h1q_A 76 IVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN------------DGIV 143 (272)
T ss_dssp HHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS------------SEEE
T ss_pred HHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC------------CEEE
Confidence 5788999999888988999999999999999999999999999999999999999999988653 1499
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC
Q psy4399 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 161 (379)
Q Consensus 82 vD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~ 161 (379)
+|+|||||+++++. ++... ......+||.+||+.+.+++... ...++++|+.++
T Consensus 144 iDiGggst~~~~~~--~g~~~---~~~~~~~Gg~~~~~~l~~~l~~~-------------------~~~ae~~k~~~~-- 197 (272)
T 3h1q_A 144 VDIGGGTTGIAVIE--KGKIT---ATFDEPTGGTHLSLVLAGSYKIP-------------------FEEAETIKKDFS-- 197 (272)
T ss_dssp EEECSSCEEEEEEE--TTEEE---EECCBSCCHHHHHHHHHHHHTCC-------------------HHHHHHHHHSST--
T ss_pred EEECCCcEEEEEEE--CCEEE---EEecCCCcHHHHHHHHHHHhCCC-------------------HHHHHHHHHhcC--
Confidence 99999999999987 45332 23558999999999998876311 237888888865
Q ss_pred ceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHH
Q psy4399 162 TQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 241 (379)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l 241 (379)
+ ++++++++.+.++++...+.+.++..+ +++.|+|+||+|++|++++.+
T Consensus 198 --------------------~-------~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l 246 (272)
T 3h1q_A 198 --------------------R-------HREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEF 246 (272)
T ss_dssp --------------------T-------HHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHH
T ss_pred --------------------C-------HHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHH
Confidence 2 889999999999999999999988654 367999999999999999999
Q ss_pred HHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 242 QDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 242 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
++.|+ .++..+.||++++|+|||++|
T Consensus 247 ~~~l~---------------------------------~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 247 SRFLG---------------------------------KEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp HHHHS---------------------------------SCCBCCSSGGGHHHHHHHTTC
T ss_pred HHHhC---------------------------------CCccccCChHHHHHHHHHhcC
Confidence 99997 456678899999999999864
No 12
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.93 E-value=2.4e-25 Score=215.29 Aligned_cols=215 Identities=13% Similarity=0.139 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCC
Q psy4399 33 QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 112 (379)
Q Consensus 33 ~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~l 112 (379)
..+.+.+|++.||+++..++.||.|||++++.... ++..++|+|+||||||+++++ ++.+... ++.++
T Consensus 169 ~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~-------~~~gv~vvDiGggttdisi~~--~g~~~~~---~~i~~ 236 (419)
T 4a2a_A 169 VYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPE-------KDRGVVVVNLGYNFTGLIAYK--NGVPIKI---SYVPV 236 (419)
T ss_dssp HHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHH-------HHHCEEEEEECSSSEEEEEEE--TTEEEEE---EEESC
T ss_pred HHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhcccc-------ccCCEEEEEECCCcEEEEEEE--CCEEEEE---Eeccc
Confidence 34678999999999999999999999999876543 457899999999999999998 5655432 34789
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCC-----CceeEEEeecccCCcceeeeeeccccc
Q psy4399 113 GGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-----STQASIEIDSLFEGVDFYTSVTRARLS 187 (379)
Q Consensus 113 GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~-----~~~~~~~i~~~~~~~~~~~~i~~~~~~ 187 (379)
||++||+.|++.+... ..+||++|+.++. .....+.++... ......++
T Consensus 237 GG~~it~dIa~~l~~~-------------------~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~--~~~~~~is----- 290 (419)
T 4a2a_A 237 GMKHVIKDVSAVLDTS-------------------FEESERLIITHGNAVYNDLKEEEIQYRGLD--GNTIKTTT----- 290 (419)
T ss_dssp CHHHHHHHHHHHHTCC-------------------HHHHHHHHHHHCCSCCTTCCCCEEEEECTT--SCSEEEEE-----
T ss_pred HHHHHHHHHHHHHCCC-------------------HHHHHHHHHHhccCcccCCCCceEEEeecC--CccceEEc-----
Confidence 9999999998765322 2389999998864 234455555432 22334445
Q ss_pred ccHHHHHHHHHHHhhchhhHHHHHHHHhcC------CcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCcccc
Q psy4399 188 VTRARFEELNADLFRGTMEPVEKSLRDAKM------DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTL 261 (379)
Q Consensus 188 ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~------~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~ 261 (379)
++++.++++|.++++.+.+++.|+.++. ....++.|+|+||+|++|++++.+++.|+. +.+.....
T Consensus 291 --~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~-~vri~~~~----- 362 (419)
T 4a2a_A 291 --AKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKS-PVRTGCYA----- 362 (419)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTS-CEEECCGG-----
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCC-CeEEEecC-----
Confidence 9999999999999999999999999987 345688999999999999999999999973 22222200
Q ss_pred ccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHH
Q psy4399 262 CWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 303 (379)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l 303 (379)
...| ....|.. ....+|.++.|.|+++++...
T Consensus 363 ---~~~p------~~~~~~~-~~~~~P~~~t~~Gl~~~~~~~ 394 (419)
T 4a2a_A 363 ---NSDR------PSIINAD-EVANDPSFAAAFGNVFAVSEN 394 (419)
T ss_dssp ---GSSS------CCCBTCH-HHHTCGGGHHHHHTTCC----
T ss_pred ---CCCc------hhccCcc-cccCCchHHHHHHHHHHHhhc
Confidence 0000 0000000 113599999999999988654
No 13
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=99.92 E-value=6e-26 Score=214.86 Aligned_cols=221 Identities=17% Similarity=0.151 Sum_probs=159.6
Q ss_pred ChHHHHHHHHHHHcCCCCCcEE--EEcCCCCCHHHHHHHHHHHHHc--------C------CceeeeccchHHHHHHhcc
Q psy4399 1 MVLTKMKETAEAYLGKTVSNAV--ITVPAYFNDSQRQATKDSGTIA--------G------LNVLRIINEPTAAAIAYGL 64 (379)
Q Consensus 1 ~iL~~l~~~a~~~~~~~~~~~v--itvPa~~~~~~r~~l~~a~~~A--------G------l~~~~lv~Ep~Aaa~~~~~ 64 (379)
|++..|+..++...+.+ .++| +++|++++..||+++++++..+ | ++.+++++||.|||++|+.
T Consensus 103 ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l~ 181 (346)
T 2fsj_A 103 LIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLN 181 (346)
T ss_dssp HHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhhc
Confidence 35555665542223334 4799 9999999999999999997775 4 3568999999999998832
Q ss_pred ccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcc--CccccHH
Q psy4399 65 DKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK--DLTTNKR 142 (379)
Q Consensus 65 ~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~--~~~~~~~ 142 (379)
..... .....++|||+||||||++++++.++. .+.+..++..+||+++++.|.+++.+++. . .+.
T Consensus 182 ~~~~~----~~~~~vlVvDIGgGTtDv~vi~~~~g~-~v~~~s~~~~lGg~~i~~~I~~~i~~~~g----~~~~i~---- 248 (346)
T 2fsj_A 182 QGIIE----QQPGYGVVIDVGSRTTDVLTINLMDME-PVVELSFSLQIGVGDAISALSRKIAKETG----FVVPFD---- 248 (346)
T ss_dssp HTSSC----CCSSEEEEEEECSSCEEEEEEETTTTE-ECGGGCEEESCCHHHHHHHHHHHHHHHHC----CCCCHH----
T ss_pred ccccc----ccCCcEEEEECCCCcEEEEEEEecCCE-EEeecCCCcchhHHHHHHHHHHHHHHHhC----CCcCCC----
Confidence 11110 134779999999999999999987776 55555677899999999999988876654 2 111
Q ss_pred HHHHHHHHHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccHHHH-HHHHHHHhhchhhHHHHHHHHhcCCcCC
Q psy4399 143 ALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARF-EELNADLFRGTMEPVEKSLRDAKMDKAQ 221 (379)
Q Consensus 143 ~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~-~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 221 (379)
.+.+| .. ..+.+ .|. .++ ++++ +++++++++++.+.+++.|+++ .++
T Consensus 249 -----~~~~e-------~~--~~~~~----~g~----~~~-------~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~~ 296 (346)
T 2fsj_A 249 -----LAQEA-------LS--HPVMF----RQK----QVG-------GPEVSGPILEDLANRIIENIRLNLRGE---VDR 296 (346)
T ss_dssp -----HHHHH-------TT--SCEEE----TTE----EEC-------SHHHHHHHHHHHHHHHHHHHHHHHGGG---GGG
T ss_pred -----HHHHh-------cC--CeEeE----CCc----cCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhh---hhc
Confidence 01122 01 11222 122 233 7899 9999999999999999999876 446
Q ss_pred cCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccc-cCCCChhhHHHhhHHHHH
Q psy4399 222 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKEL-NKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 222 i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~aVA~Gaa~~a 300 (379)
++.|+|+||+|++ +++.+++.|+. ..+ ....||++|+|.|+..++
T Consensus 297 i~~IvL~GGga~l--l~~~l~~~~~~--------------------------------~~i~~~~~~P~~ava~G~~~~~ 342 (346)
T 2fsj_A 297 VTSLIPVGGGSNL--IGDRFEEIAPG--------------------------------TLVKIKPEDLQFANALGYRDAA 342 (346)
T ss_dssp EEEEEEESTTHHH--HGGGGGGGSTT--------------------------------CBCCCCTTTTTTHHHHHHHHHH
T ss_pred ccEEEEECCcHHH--HHHHHHHHCcC--------------------------------cEEeccCCCcHHHHHHHHHHHH
Confidence 8999999999999 88888888853 111 226799999999999876
Q ss_pred H
Q psy4399 301 A 301 (379)
Q Consensus 301 ~ 301 (379)
.
T Consensus 343 ~ 343 (346)
T 2fsj_A 343 E 343 (346)
T ss_dssp H
T ss_pred h
Confidence 4
No 14
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.90 E-value=7.2e-24 Score=203.24 Aligned_cols=206 Identities=18% Similarity=0.220 Sum_probs=143.5
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCH------------------HHHHHHHHHHHHcCCceeeeccchHHHHHHhccccc
Q psy4399 6 MKETAEAYLGKTVSNAVITVPAYFND------------------SQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKK 67 (379)
Q Consensus 6 l~~~a~~~~~~~~~~~vitvPa~~~~------------------~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~ 67 (379)
++..++.+++.++.++++.+|..=.. ...+++++|++.||++...++.||+||+.+|+....
T Consensus 107 i~~ea~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~ 186 (377)
T 2ych_A 107 VRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLA 186 (377)
T ss_dssp HHHHHGGGCSSCC-CEEEEEEESSCGGGSCTTSEEEEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHH
T ss_pred HHHHHhhcCCCChhHceEEEEEeCCCCCCCCcceeEEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcc
Confidence 44567888999999999999732111 124889999999999999999999999998865432
Q ss_pred cCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHH
Q psy4399 68 VGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRL 147 (379)
Q Consensus 68 ~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L 147 (379)
.. ++..++|+|+||||||+++++ .+.... .++..+||++||+.|.+.+ +.+
T Consensus 187 ~~-----~~~~~~vvDiGggttdi~i~~--~g~~~~---~~~~~~GG~~i~~~i~~~~--------~~~----------- 237 (377)
T 2ych_A 187 EE-----PDRVFLVLDIGAESTSLVLLR--GDKPLA---VRVLTLSGKDFTEAIARSF--------NLD----------- 237 (377)
T ss_dssp TS-----TTCEEEEEEECSSCEEEEEEE--TTEEEE---EEEESCSHHHHHHHHHHHT--------TCC-----------
T ss_pred cc-----cCCeEEEEEECCCcEEEEEEE--CCEEEE---EEeeechHHHHHHHHHHHh--------CCC-----------
Confidence 11 457799999999999999998 453322 3457899999999998732 111
Q ss_pred HHHHHHHhhhcCCCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHH--hcCCcCCcCEE
Q psy4399 148 RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRD--AKMDKAQIHDI 225 (379)
Q Consensus 148 ~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~--~~~~~~~i~~V 225 (379)
..+||++|+.++............. .+......++++++++++++.++++...+++.|+. ++.....++.|
T Consensus 238 ~~~aE~~K~~~~~~~~~~~~~~~~i-------~~~~~~~~i~~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~I 310 (377)
T 2ych_A 238 LLAAEEVKRTYGMATLPTEDEELLL-------DFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVG 310 (377)
T ss_dssp HHHHHHHHHHTC--------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEE
T ss_pred HHHHHHHHhhccccccccccccccc-------ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEE
Confidence 2478999998875332111100000 01112334559999999999999999999999985 35556679999
Q ss_pred EEEcCCCChHHHHHHHHHHcCC
Q psy4399 226 VLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 226 vLvGG~sr~p~v~~~l~~~f~~ 247 (379)
+|+||+|++|.+++.+++.|+.
T Consensus 311 vL~GG~s~~p~l~~~l~~~l~~ 332 (377)
T 2ych_A 311 YLLGGGSKLRGLASLLTDTLGV 332 (377)
T ss_dssp EEESGGGGSTTHHHHHHHHHTS
T ss_pred EEECccccchhHHHHHHHHhCC
Confidence 9999999999999999999973
No 15
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=99.88 E-value=3.5e-22 Score=191.31 Aligned_cols=228 Identities=17% Similarity=0.219 Sum_probs=151.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHH-HHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEe
Q psy4399 19 SNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE 97 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~a-~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~ 97 (379)
..+++|+|++++..+|+++.++ .+.+|++.+.+++||.||+++++. .+.+|||+|+||||++.+.
T Consensus 101 ~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~------------~~~lVvDiG~gtt~v~~v~-- 166 (375)
T 2fxu_A 101 HPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVTHNVPIY-- 166 (375)
T ss_dssp SCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC------------SSEEEEEECSSCEEEEEEE--
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCC------------CeEEEEEcCCCceEEeEeE--
Confidence 4599999999999999998886 578899999999999999999864 2469999999999998776
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHH---------HHHhhhcCCCceeEEEe
Q psy4399 98 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTAC---------ERAKRTLSSSTQASIEI 168 (379)
Q Consensus 98 ~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~---------e~~K~~ls~~~~~~~~i 168 (379)
+|. .+....+..++||+++|+.|.+++..+. +......+.....+++..+ +..|..++......+.+
T Consensus 167 ~G~-~~~~~~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~l 242 (375)
T 2fxu_A 167 EGY-ALPHAIMRLDLAGRDLTDYLMKILTERG---YSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYEL 242 (375)
T ss_dssp TTE-ECGGGCEEESCCHHHHHHHHHHHHHHHT---CCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEEC
T ss_pred CCE-EeccceEEeccCHHHHHHHHHHHHHhcC---CCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEEC
Confidence 663 3333234579999999999999987651 1111111122222232221 11122222222333333
Q ss_pred ecccCCcceeeeeecccccccHHHH---HHHHHHH-----hhchhhHHHHHHHHhc--CCcCCcCEEEEEcCCCChHHHH
Q psy4399 169 DSLFEGVDFYTSVTRARLSVTRARF---EELNADL-----FRGTMEPVEKSLRDAK--MDKAQIHDIVLVGGSTRIPKVQ 238 (379)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~~ltr~~~---~~~~~~~-----~~~i~~~i~~~l~~~~--~~~~~i~~VvLvGG~sr~p~v~ 238 (379)
+ +|. .+.++++.| +.+++|. ...+.+.+.+.+..+. +....++.|+|+||+|++|+++
T Consensus 243 p---dg~---------~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~ 310 (375)
T 2fxu_A 243 P---DGQ---------VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIA 310 (375)
T ss_dssp T---TSC---------EEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHH
T ss_pred C---CCC---------EEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHH
Confidence 2 121 233446666 3344443 3567788888888653 2234468899999999999999
Q ss_pred HHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 239 KLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 239 ~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
++|++.++... |.. .+ .++..+.+|.++++.|++++|.
T Consensus 311 ~rl~~el~~~~-----p~~---------~~-----------v~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 311 DRMQKEITALA-----PST---------MK-----------IKIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp HHHHHHHHHHS-----CTT---------CC-----------CCEECCTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-----CCC---------ee-----------EEEEcCCCCCccEEcchHHhhC
Confidence 99999886310 000 00 2344567999999999999998
No 16
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=99.87 E-value=1.2e-21 Score=190.31 Aligned_cols=251 Identities=17% Similarity=0.131 Sum_probs=161.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHH-HHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEE
Q psy4399 18 VSNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 96 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~a~-~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~ 96 (379)
...+++|+|++|+..+|++|.+++ +.+|++.+.+++||.||+++......... .+.+.+|||+|+||||++++.
T Consensus 107 ~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~----~~~~glVvDiG~gtt~v~~v~- 181 (418)
T 1k8k_A 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGE----RTLTGTVIDSGDGVTHVIPVA- 181 (418)
T ss_dssp GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCS----CCCCEEEEEESSSCEEEEEEE-
T ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCC----CCCeEEEEEcCCCceEEEEeE-
Confidence 357999999999999999999998 88999999999999999987221111110 112669999999999999986
Q ss_pred eCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCc--------------
Q psy4399 97 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST-------------- 162 (379)
Q Consensus 97 ~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~-------------- 162 (379)
+|. .+....+...+||+++|+.|.+++.++.. ......+ ...+|++|+.++...
T Consensus 182 -~G~-~~~~~~~~~~lGG~~lt~~l~~~l~~~~~---~~~~~~~-------~~~~e~iK~~~~~v~~~~~~e~~~~~~~~ 249 (418)
T 1k8k_A 182 -EGY-VIGSCIKHIPIAGRDITYFIQQLLRDREV---GIPPEQS-------LETAKAVKERYSYVCPDLVKEFNKYDTDG 249 (418)
T ss_dssp -TTE-ECGGGCEEESCSHHHHHHHHHHHHHTTCC---CCCGGGH-------HHHHHHHHHHHCCCCSCHHHHHHHHHHSG
T ss_pred -CCE-EcccceEEEeCcHHHHHHHHHHHHHhcCC---CCCCHHH-------HHHHHHHHHhhchhcccHHHHHHhhcccc
Confidence 553 22222355799999999999998875421 1111111 235677777765321
Q ss_pred ---eeEEEeecccCCcceeeeeecccccccHHHH---HHHHHHHh------hchhhHHHHHHHHhc--CCcCCcCEEEEE
Q psy4399 163 ---QASIEIDSLFEGVDFYTSVTRARLSVTRARF---EELNADLF------RGTMEPVEKSLRDAK--MDKAQIHDIVLV 228 (379)
Q Consensus 163 ---~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~---~~~~~~~~------~~i~~~i~~~l~~~~--~~~~~i~~VvLv 228 (379)
...+.++....+.+.... ++++.| |.+|.|.+ ..+.+.|.+.|..+. +....++.|+|+
T Consensus 250 ~~~~~~~~lpd~~~~~~~~i~-------l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~ 322 (418)
T 1k8k_A 250 SKWIKQYTGINAISKKEFSID-------VGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLS 322 (418)
T ss_dssp GGTCEEEEEECTTTCCEEEEE-------ECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEE
T ss_pred cccceeEECCCCCCCcccEEE-------eChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEe
Confidence 123444433223333333 448888 55555542 568889999998764 334557889999
Q ss_pred cCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 229 GGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 229 GG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
||+|++|+++++|++.++..-........ ...+.+. .| ... ..++..+.+|..++..|++++|.
T Consensus 323 GG~s~~pg~~~rl~~el~~~~~~~~~~~~-~~~~~~~-~p------~~~-~v~v~~~~~~~~~~w~Ggsilas 386 (418)
T 1k8k_A 323 GGSTMFRDFGRRLQRDLKRTVDARLKLSE-ELSGGRL-KP------KPI-DVQVITHHMQRYAVWFGGSMLAS 386 (418)
T ss_dssp SGGGCSTTHHHHHHHHHHHHHHHHHHHHH-HHC-----CC------CCC-CCCEECCTTCTTHHHHHHHHHTT
T ss_pred CCccccccHHHHHHHHHHHhhcccccccc-ccccccC-CC------Cce-eEEEeCCCccccceeHhHHHHHc
Confidence 99999999999999988631000000000 0000000 00 000 02344456789999999999886
No 17
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=99.81 E-value=7e-20 Score=171.55 Aligned_cols=206 Identities=15% Similarity=0.218 Sum_probs=136.7
Q ss_pred CcEEEEcCCC-CCHH--HH--HHHHHH------------HHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 19 SNAVITVPAY-FNDS--QR--QATKDS------------GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 19 ~~~vitvPa~-~~~~--~r--~~l~~a------------~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
.++|+++|.. |... |+ +++++- .+.+++..+.+++||.||+++++.... ++..++|
T Consensus 96 ~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e~~aa~~~~~~~~~-------~~~~~~v 168 (320)
T 2zgy_A 96 VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD-------ELDSLLI 168 (320)
T ss_dssp EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEESSHHHHHHHHHHSC-------TTCEEEE
T ss_pred EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecCcHHHHHhhhcccc-------CCCCEEE
Confidence 3699999986 6431 11 222221 233456788999999999998864322 4678999
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHH-hhhcCC
Q psy4399 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA-KRTLSS 160 (379)
Q Consensus 82 vD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~-K~~ls~ 160 (379)
+|+||||||+++++ ++...+.+..++..+||.+||+.|.+++.++ +.++ +.. .+|++ |..-
T Consensus 169 vDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~~i--~~~-------~ae~~lk~~~-- 230 (320)
T 2zgy_A 169 IDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLA-----RTKG--SSY-------LADDIIIHRK-- 230 (320)
T ss_dssp EEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCC-----SBGG--GHH-------HHHHHHHTTT--
T ss_pred EEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHHHHHHHc-----CCCC--CHH-------HHHHHHHHhh--
Confidence 99999999999998 5555566556778999999999999888542 1111 111 34444 3320
Q ss_pred CceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
. .... +....... ..+++.+++++.++++.+.+.+.+++. .+++.|+|+||+|++ +++.
T Consensus 231 -~------~~~~-~~~i~~~~-------~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~~vvl~GGga~l--l~~~ 289 (320)
T 2zgy_A 231 -D------NNYL-KQRINDEN-------KISIVTEAMNEALRKLEQRVLNTLNEF----SGYTHVMVIGGGAEL--ICDA 289 (320)
T ss_dssp -C------HHHH-HHHSSSSC-------THHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCEEEEESTTHHH--HHHH
T ss_pred -h------hhcc-cceecCch-------hhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEEEECChHHH--HHHH
Confidence 0 0000 00000000 145666677777777777777776552 468999999999998 9999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
+++.|+.. +.++....||++|+|.||++++
T Consensus 290 l~~~~~~~------------------------------~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 290 VKKHTQIR------------------------------DERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp HHHTSCCC------------------------------GGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHhCCC------------------------------CCceeeCCCcHHHHHHHHHHhc
Confidence 99998630 0145667899999999999875
No 18
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=99.67 E-value=5e-17 Score=153.79 Aligned_cols=210 Identities=14% Similarity=0.184 Sum_probs=139.2
Q ss_pred cEEEEcCCCCCHHHH-HHHHHHHHHcCC------------ceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCC
Q psy4399 20 NAVITVPAYFNDSQR-QATKDSGTIAGL------------NVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGG 86 (379)
Q Consensus 20 ~~vitvPa~~~~~~r-~~l~~a~~~AGl------------~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~Gg 86 (379)
.+++++|..+...+| +++++++..++- ..+.+++||.||+++++.+....... -++..++|+|+||
T Consensus 115 ~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~-~~~~~~~vvDiGg 193 (355)
T 3js6_A 115 VIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKA-FTEGKYSVLDFGS 193 (355)
T ss_dssp EEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHH-HHTCEEEEEEECS
T ss_pred EEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccc-cccCcEEEEEeCC
Confidence 799999998887776 589998875543 56889999999999987653210000 0267899999999
Q ss_pred ceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCceeEE
Q psy4399 87 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASI 166 (379)
Q Consensus 87 gT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~ 166 (379)
||||++++. ++... ....+...+||..+++.+.+++.+++. +..+. . ...++.+. +
T Consensus 194 gTtd~~v~~--~~~~~-~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~-------~~i~~g~~---------~ 249 (355)
T 3js6_A 194 GTTIIDTYQ--NMKRV-EEESFVINKGTIDFYKRIASHVSKKSE---GASIT--P-------RMIEKGLE---------Y 249 (355)
T ss_dssp SCEEEEEEE--TTEEC-GGGCEEESCCHHHHHHHHHHHTC-----------C--H-------HHHHSCCC----------
T ss_pred CcEEEEEEc--CCEEc-cccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--H-------HHHhcCCc---------c
Confidence 999999994 55432 112233679999999999999877642 11111 1 01111111 0
Q ss_pred EeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHH--HHHHHHHH
Q psy4399 167 EIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK--VQKLLQDF 244 (379)
Q Consensus 167 ~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~--v~~~l~~~ 244 (379)
.. .+.+.. ..+.+ .+.+++.++++++++.+.+++.+.+ +..++.|+|+||+|.++. |.+.+++.
T Consensus 250 ~~----~~~~~~-----k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~ 315 (355)
T 3js6_A 250 KQ----CKLNQK-----TVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDV 315 (355)
T ss_dssp ---------------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSC
T ss_pred cc----cccccc-----ccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHH
Confidence 00 000000 00001 4667777778888888888877754 356799999999999988 88888887
Q ss_pred cCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 245 FNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 245 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
|+. . .||.+|+|.|+..++..+.+
T Consensus 316 ~~~--------------------------------~-----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 316 FEK--------------------------------A-----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp EEC--------------------------------C-----SSGGGHHHHHHHHHHHHHHH
T ss_pred CCC--------------------------------C-----CCcHHHHHHHHHHHHHHHHh
Confidence 752 1 79999999999999987754
No 19
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=99.66 E-value=4.6e-17 Score=156.61 Aligned_cols=232 Identities=19% Similarity=0.235 Sum_probs=89.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHHH-HHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEe
Q psy4399 19 SNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE 97 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~a-~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~ 97 (379)
..+++|+|+.++..+|+++.++ .+.+|++.+.++.||.||+++++.. +.+|||+|+|||+++.+.
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~------------~~lVVDiG~g~T~v~pv~-- 170 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLL------------TGVVVDSGDGVTHICPVY-- 170 (394)
T ss_dssp -------------------------------------------------------------CCEEEECSSCEEEECEE--
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCc------------eEEEEEcCCCceEeeeeE--
Confidence 3599999999999999999985 4788999999999999999987642 349999999999998886
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC----------------
Q psy4399 98 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS---------------- 161 (379)
Q Consensus 98 ~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~---------------- 161 (379)
+|.. +........+||+++|+.|.+++..+. +......+.. .+|++|+.+...
T Consensus 171 ~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~~~-------~ae~iK~~~~~v~~d~~~~~~~~~~~~~ 239 (394)
T 1k8k_B 171 EGFS-LPHLTRRLDIAGRDITRYLIKLLLLRG---YAFNHSADFE-------TVRMIKEKLCYVGYNIEQEQKLALETTV 239 (394)
T ss_dssp TTEE-CSTTCEEESCCHHHHHHHHHHHHHHTT---CCCCTTTTHH-------HHHHHHHHHCCCCSSHHHHHHHHHHCST
T ss_pred CCEE-cccceEEeeccHHHHHHHHHHHHHhcC---CCCCcHHHHH-------HHHHHHHhheeEecCHHHHHHhhccCCc
Confidence 5533 221123368999999999999886541 1111111222 345555544321
Q ss_pred ceeEEEeecccCCcceeeeeecccccccHHHH---HHHHHHH-----hhchhhHHHHHHHHhcCC--cCCcCEEEEEcCC
Q psy4399 162 TQASIEIDSLFEGVDFYTSVTRARLSVTRARF---EELNADL-----FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGS 231 (379)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~ 231 (379)
....+.++ +|. .+.++.+.| |.+++|. ...+.+.|.+.|..+... ...+++|+|+||+
T Consensus 240 ~~~~~~lp---dg~---------~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~ 307 (394)
T 1k8k_B 240 LVESYTLP---DGR---------IIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGS 307 (394)
T ss_dssp TCEEEECT---TSC---------EEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGG
T ss_pred CceEEECC---CCC---------EEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcc
Confidence 11222222 121 233445555 2223332 245778888888876433 3346789999999
Q ss_pred CChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 232 TRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 232 sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
|++|++.++|++.+..........++.. .|.. + ...+..+.+|..++..|++++|.
T Consensus 308 s~~~G~~~rl~~el~~~~~~~~~~~~~~-------~p~~------~-~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 308 TMYPGLPSRLERELKQLYLERVLKGDVE-------KLSK------F-KIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp GCSTTHHHHHHHHHHHHHHHHTCSSCCC-------TTCC------C-CC---------------------
T ss_pred cccccHHHHHHHHHHHHHhhhhcccccC-------CCCc------e-EEEEecCCCcceeEEhhhHHhhC
Confidence 9999999999998853110000000000 0000 0 02333356788999999999887
No 20
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=99.60 E-value=5.7e-15 Score=135.15 Aligned_cols=185 Identities=17% Similarity=0.148 Sum_probs=118.2
Q ss_pred ceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHH
Q psy4399 47 NVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 126 (379)
Q Consensus 47 ~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~ 126 (379)
..+..++|++|.++++..... ....|+|+|||+++++++. .++.++.....+++..|+.+|++.+++++.
T Consensus 72 ~~~~~Vne~~aha~a~~~~~~---------~~~~vl~lgG~~~~~~~~~-~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~ 141 (276)
T 4ehu_A 72 DADKQISELSCHARGVNFIIP---------ETRTIIDIGGQDAKVLKLD-NNGRLLNFLMNDKCAAGTGRFLDVMAKIIE 141 (276)
T ss_dssp SCSEECCHHHHHHHHHHHHST---------TCCEEEEECSSCEEEEEEC-TTSCEEEEEEECSCSTTSHHHHHHHHHHHT
T ss_pred CCCcccchHHHHHHHHHHhCC---------CCCeEEEEcCCCceEEEEE-ecCceEEEEeCCCcCcchhhHHHHHHHHhc
Confidence 467889999999988765432 2347899999999999885 467788888888899999999999888775
Q ss_pred HHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCceeEEEeecccCCcceeeeeec-ccccccHHHHHHHHHHHhhchh
Q psy4399 127 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTR-ARLSVTRARFEELNADLFRGTM 205 (379)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i~~-~~~~ltr~~~~~~~~~~~~~i~ 205 (379)
..+.+.. . .+..++.. .. + ......+.-+. ....-.....++++..+.+.+.
T Consensus 142 ~~~~~~~------------~---~~~~a~~~------~~--i----~~~~~~f~~s~~~~~~~~~~~~~di~a~~~~~v~ 194 (276)
T 4ehu_A 142 VDVSELG------------S---ISMNSQNE------VS--I----SSTCTVFAESEVISHLSENAKIEDIVAGIHTSVA 194 (276)
T ss_dssp CCGGGHH------------H---HHTTCSSC------CC--C----CCCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cChhhhH------------H---HHhcCCCC------CC--c----CCccchhhhhHHHHhhhccccHHHHHHHHHHHHH
Confidence 4332110 0 00001100 00 0 00000000000 0000001112344455555555
Q ss_pred hHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCC
Q psy4399 206 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKS 285 (379)
Q Consensus 206 ~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (379)
+.+....... ..++.|+|+||.+++|.|++.+++.|+ .++..+
T Consensus 195 ~~l~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~g---------------------------------~~~~~p 237 (276)
T 4ehu_A 195 KRVSSLVKRI----GVQRNVVMVGGVARNSGIVRAMAREIN---------------------------------TEIIVP 237 (276)
T ss_dssp HHHHHHHHHH----CCCSSEEEESGGGGCHHHHHHHHHHHT---------------------------------SCEECC
T ss_pred HHHHHHHHhc----ccCCeEEEecCccchHHHHHHHHHHHC---------------------------------CCeeeC
Confidence 5444444333 346789999999999999999999997 467788
Q ss_pred CChhhHHHhhHHHHHHHHhC
Q psy4399 286 INPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 286 ~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.||++++|+|||++|.....
T Consensus 238 ~~p~~~~A~GAAl~A~~~~~ 257 (276)
T 4ehu_A 238 DIPQLTGALGAALYAFDEAK 257 (276)
T ss_dssp SSGGGHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHh
Confidence 89999999999999976544
No 21
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=99.60 E-value=1.3e-15 Score=146.21 Aligned_cols=206 Identities=21% Similarity=0.198 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHHc-CC--ceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEe
Q psy4399 30 NDSQRQATKDSGTIA-GL--NVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKST 106 (379)
Q Consensus 30 ~~~~r~~l~~a~~~A-Gl--~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~ 106 (379)
+..+-+.+.+|++.+ |+ ++-. .||.||+++.+...+ ++..++++||||||||++++.- +.+.....
T Consensus 366 ~~~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE-------~eLGvaiIDmGGGTTd~sVf~~--G~lv~a~~ 434 (610)
T 2d0o_A 366 DRLQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPG-------TTRPLAILDLGAGSTDASIINP--KGDIIATH 434 (610)
T ss_dssp SCCCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTT-------CCSSEEEEEECSSEEEEEEECT--TCCEEEEE
T ss_pred CHHHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-------CcCCeEEEEeCCCcceEEEEcC--CcEEEEEE
Confidence 344577899999999 99 5555 999999999998876 6788999999999999999984 32222221
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH-HHHHhccCccccHHHHHHHHHHHHHHhhhcCC----------CceeEEEe--ecccC
Q psy4399 107 AGDTHLGGEDFDNRMVNHFVQE-FKRKYKKDLTTNKRALRRLRTACERAKRTLSS----------STQASIEI--DSLFE 173 (379)
Q Consensus 107 ~~~~~lGG~~id~~l~~~l~~~-~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~----------~~~~~~~i--~~~~~ 173 (379)
...||+.++..|..-|.-. +. .||+.|. ... +....+.+ +...
T Consensus 435 ---ip~gG~~VT~DIA~~Lgt~d~~-------------------~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lg- 490 (610)
T 2d0o_A 435 ---LAGAGDMVTMIIARELGLEDRY-------------------LAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLP- 490 (610)
T ss_dssp ---EECSHHHHHHHHHHHHTCCCHH-------------------HHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCC-
T ss_pred ---eccchHHHHHHHHHHhCCCCHH-------------------HHHHhcc-cCceeecccccccCCCCeEEEecCCCC-
Confidence 5789999999998776433 33 7899998 421 11122333 2211
Q ss_pred Ccceeeeeec------ccc-cccHHH--HHHHHHHHhhchhhH--HHHHHHHhcC-----CcCCcCEEEEEcCCCChHHH
Q psy4399 174 GVDFYTSVTR------ARL-SVTRAR--FEELNADLFRGTMEP--VEKSLRDAKM-----DKAQIHDIVLVGGSTRIPKV 237 (379)
Q Consensus 174 ~~~~~~~i~~------~~~-~ltr~~--~~~~~~~~~~~i~~~--i~~~l~~~~~-----~~~~i~~VvLvGG~sr~p~v 237 (379)
...+++ ..+ .+ +.. +|+ ++-.-+++.+. +.+.|+..+. +..+|..|+|+||+|+++.+
T Consensus 491 ----p~~~~Rv~~~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI 564 (610)
T 2d0o_A 491 ----PAVFARVCVVKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEV 564 (610)
T ss_dssp ----GGGTTCEEEECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSH
T ss_pred ----cceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccH
Confidence 111111 111 23 344 555 43333333332 2223444322 23467999999999999999
Q ss_pred HHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 238 QKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 238 ~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
.+..++.|+.++.+...|. .....+|.+|+|.|++++-+
T Consensus 565 ~ElA~~iL~~y~VRiGrP~-------------------------~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 565 PQLVTDALAHYRLVAGRGN-------------------------IRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp HHHHHHHTTTSSCEEEECC-------------------------GGGTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCeEEecCC-------------------------ccccCCCcHHHHHHHHHHHh
Confidence 9999999985455554432 12256999999999998765
No 22
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=99.58 E-value=1.4e-15 Score=146.53 Aligned_cols=203 Identities=20% Similarity=0.188 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHc-CC--ceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCC
Q psy4399 33 QRQATKDSGTIA-GL--NVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 109 (379)
Q Consensus 33 ~r~~l~~a~~~A-Gl--~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~ 109 (379)
+-+.+.+|++.+ |+ ++-. .||.||+++.+...+ ++..++++||||||||++++.-..-.+ .. .
T Consensus 371 ~m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE-------~elGvaiIDmGgGTTd~sVf~~g~lv~--a~---~ 436 (607)
T 1nbw_A 371 QMQVIARELSARLQTEVVVGG--VEANMAIAGALTTPG-------CAAPLAILDLGAGSTDAAIVNAEGQIT--AV---H 436 (607)
T ss_dssp CSCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTT-------CCSSEEEEEECSSEEEEEEECSSSCEE--EE---E
T ss_pred HHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-------CcCCeEEEEeCCCcceEEEEcCCcEEE--EE---E
Confidence 345788999999 99 5555 999999999998876 678899999999999999998433222 21 1
Q ss_pred CCCCHHHHHHHHHHHHHHH-HHHHhccCccccHHHHHHHHHHHHHHhhhcCC----------CceeEEEe--ecccCCcc
Q psy4399 110 THLGGEDFDNRMVNHFVQE-FKRKYKKDLTTNKRALRRLRTACERAKRTLSS----------STQASIEI--DSLFEGVD 176 (379)
Q Consensus 110 ~~lGG~~id~~l~~~l~~~-~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~----------~~~~~~~i--~~~~~~~~ 176 (379)
...||+.++..|..-|.-. +. .||+.|. ... +....+.+ +...
T Consensus 437 ip~gG~~VT~DIA~~Lg~~d~~-------------------~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lg---- 492 (607)
T 1nbw_A 437 LAGAGNMVSLLIKTELGLEDLS-------------------LAEAIKK-YPLAKVESLFSIRHENGAVEFFREALS---- 492 (607)
T ss_dssp EECCHHHHHHHHHHHHTCSCHH-------------------HHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCC----
T ss_pred eccchHHHHHHHHHHhCCCCHH-------------------HHHHhcc-cCceeecccccccCCCCeEEEecCCCC----
Confidence 5789999999998776433 33 7899998 421 11122333 2111
Q ss_pred eeeeeec------ccc-cccHHH--HHHHHHHHhhchhhH--HHHHHHHhcCC-----cCCcCEEEEEcCCCChHHHHHH
Q psy4399 177 FYTSVTR------ARL-SVTRAR--FEELNADLFRGTMEP--VEKSLRDAKMD-----KAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 177 ~~~~i~~------~~~-~ltr~~--~~~~~~~~~~~i~~~--i~~~l~~~~~~-----~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
...+++ ..+ .+ +.. +|+ ++-.-+++.+. +.+.|+..+.. ..+|..|+|+||+|+++.+.+.
T Consensus 493 -p~~~~R~~~~~~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~el 569 (607)
T 1nbw_A 493 -PAVFAKVVYIKEGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQL 569 (607)
T ss_dssp -GGGTTCEEEEETTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHH
T ss_pred -cceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHH
Confidence 011111 111 22 333 444 33333333332 23447765543 3356999999999999999999
Q ss_pred HHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 241 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
.++.|+.++.+...|. .....+|.+|+|.|++++-+
T Consensus 570 A~~iL~~~~VRiGrP~-------------------------~~g~~gP~fAtAvGLlly~~ 605 (607)
T 1nbw_A 570 ITEALSHYGVVAGQGN-------------------------IRGTEGPRNAVATGLLLAGQ 605 (607)
T ss_dssp HHHHHHTTTCEEEECC-------------------------GGGTSCSCCHHHHHHHHHHH
T ss_pred HHHHhCcCCeEEecCC-------------------------ccccCCchHHHHHHHHHhhh
Confidence 9999985455554432 12256999999999998753
No 23
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=99.56 E-value=2e-15 Score=141.57 Aligned_cols=203 Identities=14% Similarity=0.182 Sum_probs=137.1
Q ss_pred CcEEEEcCCCCCH--HHHHHHHHHHHHc--------C------CceeeeccchHHHHHHhccccccCCCCCCCCceEEEE
Q psy4399 19 SNAVITVPAYFND--SQRQATKDSGTIA--------G------LNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIF 82 (379)
Q Consensus 19 ~~~vitvPa~~~~--~~r~~l~~a~~~A--------G------l~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVv 82 (379)
..++++.|..+.. .+|+.+++....- | +..+.+++||.+|.+.+. . . .++..++|+
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~-~-~------~~~~~v~vv 177 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ-E-N------FKNKNVAVI 177 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC-C-C------CTTCEEEEE
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc-h-h------hccCCEEEE
Confidence 4799999986654 3677888776621 2 135788999999887652 1 1 156889999
Q ss_pred EcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHH-HHHHHhccCccccHHHHHHHHHHHHHHhhhcCCC
Q psy4399 83 DLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ-EFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 161 (379)
Q Consensus 83 D~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~-~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~ 161 (379)
|+||||||+++++ ++.. +....+...+||.++++.+.+++.+ ++. ..+... .++++|+. ..
T Consensus 178 DiGggTtd~~v~~--~g~~-~~~~~~~~~~G~~~~~~~i~~~l~~~~~g----~~i~~~---------~~e~i~~~-g~- 239 (329)
T 4apw_A 178 DFGGLNMGFSLYR--NCVV-NPSERFIEEHGVKDLIIRVGDALTDLNNG----NLITNE---------QAESALNN-GY- 239 (329)
T ss_dssp EECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHTSSSSCSSC----SCTTSB---------TTTTCSSS-CS-
T ss_pred EeCCCcEEEEEEE--CCEE-eeccccchhhHHHHHHHHHHHHHHhhccC----CCCCHH---------HHHHHHhc-CC-
Confidence 9999999999998 5543 2222334689999999999987765 332 211110 23333332 10
Q ss_pred ceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHH
Q psy4399 162 TQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 241 (379)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l 241 (379)
. ..+.+. ..+..+++++.+++.++.+.+.+++. . .+++.++.|+|+||+|.+ +.+.+
T Consensus 240 --~-------~~g~~~--------~~~~~~~i~~~~~e~~~~I~~~i~~~-~---~~~~~~~~IvltGGGA~l--~~~~l 296 (329)
T 4apw_A 240 --M-------KKGGEI--------DTESSTVIKKVKEKFLKDAIKLIEKR-G---FKLDQLDSLIFIGGTTQK--LKEQI 296 (329)
T ss_dssp --S-------CEECTT--------CCSTTHHHHHHHHHHHHHHHHHHHHH-T---CCTTSCSEEEEESTTHHH--HHHHH
T ss_pred --c-------ccCCcc--------hhHHHHHHHHHHHHHHHHHHHHHHHc-C---CCHHHccEEEEECChHHH--HHHHH
Confidence 0 001111 11236777887778777777777766 2 444557999999999998 66999
Q ss_pred HHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHHHH
Q psy4399 242 QDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 303 (379)
Q Consensus 242 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l 303 (379)
++.|+. ++....||.+|+|.|+..++...
T Consensus 297 ~~~~~~---------------------------------~v~v~~~P~~a~a~G~~~~~~~k 325 (329)
T 4apw_A 297 SKTYPN---------------------------------NSIITNNSQWTTCEGLYKVAVAK 325 (329)
T ss_dssp HHHSTT---------------------------------CEECCSSGGGHHHHHHHHHHHHH
T ss_pred HHHcCC---------------------------------CCEecCCChhhHHHHHHHHHhhh
Confidence 999862 45567799999999999887654
No 24
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.39 E-value=2.7e-13 Score=131.04 Aligned_cols=245 Identities=18% Similarity=0.128 Sum_probs=142.9
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHH-HHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEe
Q psy4399 19 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE 97 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~a~-~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~ 97 (379)
..+++|.|+......|++|.+++ +..|++.+.++.+|.+|+++.+...... ....+-+|||+|+|+|+++.+.
T Consensus 124 ~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~----~~~~tglVVDiG~g~T~v~PV~-- 197 (427)
T 3dwl_A 124 HYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVT----DRSLTGTVVDSGDGVTHIIPVA-- 197 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTC----SCCCCEEEEEESSSCEEEEEEE--
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCccccc----CCCceEEEEECCCCceEEEEEE--
Confidence 47999999999999999999977 7899999999999999999877532110 0124569999999999999985
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCce---e--------EE
Q psy4399 98 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ---A--------SI 166 (379)
Q Consensus 98 ~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~---~--------~~ 166 (379)
+|..-..+ .....+||+++|+.|.+++..+... .. -...+|.+|+.+..... . ..
T Consensus 198 ~G~~l~~~-~~rl~~gG~~lt~~L~~lL~~~~~~------~~-------~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~ 263 (427)
T 3dwl_A 198 EGYVIGSS-IKTMPLAGRDVTYFVQSLLRDRNEP------DS-------SLKTAERIKEECCYVCPDIVKEFSRFDREPD 263 (427)
T ss_dssp TTEECGGG-CEEESCCHHHHHHHHHHTTC---------------------CHHHHHHHHHHCCCCSCHHHHHHHTTC---
T ss_pred CCEEehhh-heeccccHHHHHHHHHHHHHHcCCC------ch-------hHHHHHHHHHhcCcccCCHHHHHHHhhcCcc
Confidence 55321111 1125899999999999888665431 00 11245566665532110 0 00
Q ss_pred Eeec--c--cCCcceeeeeecccccccHHHH---HHHHHHH------hhchhhHHHHHHHHhcCC--cCCcCEEEEEcCC
Q psy4399 167 EIDS--L--FEGVDFYTSVTRARLSVTRARF---EELNADL------FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGS 231 (379)
Q Consensus 167 ~i~~--~--~~~~~~~~~i~~~~~~ltr~~~---~~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~ 231 (379)
.+.. + .+|... .+.+..+.| |-+++|- ...|.+.+.+.|.++..+ ..-..+|+|+||+
T Consensus 264 ~~~~~~l~~~~g~~~-------~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~ 336 (427)
T 3dwl_A 264 RYLKYASESITGHST-------TIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGS 336 (427)
T ss_dssp --CCBCC----------------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHHHHHHHCEEEESGG
T ss_pred ccceeEeeCCCCCee-------EEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHHHHHhCCEEEEccC
Confidence 0000 0 112111 233435544 2333342 235677777777765432 2234679999999
Q ss_pred CChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 232 TRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 232 sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
|.+|++.++|++.+...-........ ..++ ....+.+ .++..+.++..++=+|++++|.
T Consensus 337 sl~~G~~~RL~~El~~l~~~~~~~~~-~~~~-~~p~~~~---------vkv~~~~~r~~s~WiGGSilas 395 (427)
T 3dwl_A 337 TLFKNFGNRLQRDLKRIVDERIHRSE-MLSG-AKSGGVD---------VNVISHKRQRNAVWFGGSLLAQ 395 (427)
T ss_dssp GCSTTTTHHHHHHHHHHHTTC---------------CCC---------CCEECCTTCTTHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHhhhhhccccc-cccc-cCCCcee---------EEEecCCccccceecCceeecc
Confidence 99999999999876421000000000 0000 0000000 2344456788999999999986
No 25
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.2e-11 Score=120.90 Aligned_cols=93 Identities=18% Similarity=0.271 Sum_probs=75.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH-HHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeC
Q psy4399 20 NAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIED 98 (379)
Q Consensus 20 ~~vitvPa~~~~~~r~~l~~a~-~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~ 98 (379)
.+++|.|.......|++|.+++ +..|++.+.++.+|.||+++++.. +-||||+|+|+|+++.+. +
T Consensus 116 pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~------------tglVVDiG~g~T~vvPI~--~ 181 (498)
T 3qb0_A 116 PALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRP------------NCLVVDIGHDTCSVSPIV--D 181 (498)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCS------------SEEEEEECSSCEEEEEEE--T
T ss_pred ceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCC------------eEEEEEcCCCcEEEEEEe--C
Confidence 6999999999999999999965 789999999999999999887652 139999999999999986 5
Q ss_pred CeEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy4399 99 GIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 127 (379)
Q Consensus 99 ~~~~~~~~~~~~~lGG~~id~~l~~~l~~ 127 (379)
|..- ........+||+++|+.|.++|..
T Consensus 182 G~~l-~~ai~rl~vgG~~lt~~L~~lL~~ 209 (498)
T 3qb0_A 182 GMTL-SKSTRRNFIAGKFINHLIKKALEP 209 (498)
T ss_dssp TEEC-GGGCEEESCSHHHHHHHHHHHTTT
T ss_pred CEEc-cccceeccccHHHHHHHHHHHHHh
Confidence 5321 111122589999999999998864
No 26
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=99.04 E-value=2.4e-09 Score=108.21 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=79.2
Q ss_pred HHcCCCCCc-----EEEEcCCCCCHHHHHHHHH-HHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcC
Q psy4399 12 AYLGKTVSN-----AVITVPAYFNDSQRQATKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLG 85 (379)
Q Consensus 12 ~~~~~~~~~-----~vitvPa~~~~~~r~~l~~-a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~G 85 (379)
..++....+ +++|.|..++...|+.|.+ ..+.-|++.+.++.++.+|+++++... -+|||+|
T Consensus 187 ~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~t------------glVVDiG 254 (593)
T 4fo0_A 187 KYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSS------------TCIVDVG 254 (593)
T ss_dssp HTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSE------------EEEEEEC
T ss_pred HhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCc------------eEEEEeC
Confidence 356655443 9999999999999999988 566679999999999999999886543 4999999
Q ss_pred CceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy4399 86 GGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 128 (379)
Q Consensus 86 ggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~ 128 (379)
.+.|+++-+. +|..-..+ .....+||+++++.|.++|..+
T Consensus 255 ~~~T~v~PV~--dG~~l~~~-~~rl~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 255 DQKTSVCCVE--DGVSHRNT-RLCLAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp SSCEEEEEEE--SSCBCGGG-CEEESCCHHHHHHHHHHHHHHT
T ss_pred CCceeeeeeE--CCEEehhh-eEEecccHHHHHHHHHHHHHhc
Confidence 9999998876 55221111 1225799999999998887643
No 27
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=98.58 E-value=7e-07 Score=80.89 Aligned_cols=72 Identities=22% Similarity=0.231 Sum_probs=52.6
Q ss_pred HHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhh
Q psy4399 195 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQ 274 (379)
Q Consensus 195 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (379)
+++..+++.+...+.+.++..+. .+.|+++||.+++|.+++.+++.++
T Consensus 186 di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~lg---------------------------- 233 (270)
T 1hux_A 186 DIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGLG---------------------------- 233 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHHC----------------------------
Confidence 33444444454444444443221 3679999999999999999999997
Q ss_pred hcccCccccCCCChhhHHHhhHHHHHHHH
Q psy4399 275 DFFNGKELNKSINPDEAVAYGAAVQAAIL 303 (379)
Q Consensus 275 ~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l 303 (379)
.++..+.+|+.+.|+|||++|...
T Consensus 234 -----~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 234 -----VEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp -----SCEECCGGGGGHHHHHHHHHHHHH
T ss_pred -----CCeEeCCCcchHhHHHHHHHHHHh
Confidence 356667788889999999999764
No 28
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=98.36 E-value=8e-07 Score=88.22 Aligned_cols=96 Identities=18% Similarity=0.324 Sum_probs=76.9
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHH-HHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEe
Q psy4399 19 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE 97 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~a~-~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~ 97 (379)
..+++|.|..+....|+.|.+++ +..|++.+.++.+|.||+++++. ..+-+|||+|+|+|+++.+.
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl-----------~ttGLVVDiG~g~T~VvPV~-- 288 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI-----------STSTCVVNIGAAETRIACVD-- 288 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC-----------SSCEEEEEECSSCEEEEEEE--
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC-----------CCceEEEcCCCceEEEEEEe--
Confidence 36999999999999999999976 56899999999999999988754 12349999999999999985
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy4399 98 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 128 (379)
Q Consensus 98 ~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~ 128 (379)
+|.. +........+||+++++.|.++|..+
T Consensus 289 eG~v-l~~ai~rL~iGG~dLT~yL~kLL~~r 318 (655)
T 4am6_A 289 EGTV-LEHSAITLDYGGDDITRLFALFLLQS 318 (655)
T ss_dssp TTEE-CGGGCEEESCCHHHHHHHHHHHHHHT
T ss_pred CCEE-EhhheeeecchHHHHHHHHHHHHHHc
Confidence 5522 11111226899999999999888654
No 29
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=97.73 E-value=0.00037 Score=64.87 Aligned_cols=52 Identities=23% Similarity=0.150 Sum_probs=41.1
Q ss_pred cCEEEEEcC-CCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 222 IHDIVLVGG-STRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 222 i~~VvLvGG-~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
++.|+++|| .+..|.+++.|++.++ .|+. ++.++..+.+|+.+-|+|||+.+
T Consensus 306 i~~IvftGgfla~n~~~~~~L~~~l~---------------~ws~------------g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 306 IDRVVFVGNFLRINMVSMKLLAYAMD---------------FWSK------------GQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp CCCEEEESGGGCSSSHHHHHHHHHHH---------------HHTT------------TSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHh---------------hhhc------------CCeeEEEcCCccHHHHHHHHHHh
Confidence 456999999 9999999999999874 1221 11456678899999999999875
No 30
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=97.72 E-value=0.00045 Score=62.52 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=40.4
Q ss_pred cCEEEEEcC-CCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 222 IHDIVLVGG-STRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 222 i~~VvLvGG-~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
++.|+++|| .+..|.+++.+++.+.- .+.++..+.+|+.+.|+|||+.+
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~------------------------------~~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVL------------------------------RGCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHH------------------------------TTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhh------------------------------CCceEEECCCccHHHHHHHHHhC
Confidence 457999999 89999999999997521 01567778899999999999864
No 31
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=96.58 E-value=0.0048 Score=61.41 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCcccccccccc
Q psy4399 188 VTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQ 267 (379)
Q Consensus 188 ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 267 (379)
-++.++..++..+++.+.-.++..++........++.|.++||+++++.+.+.+.+.|+.
T Consensus 409 ~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~g~-------------------- 468 (554)
T 3l0q_A 409 TTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANATGC-------------------- 468 (554)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHHCC--------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhhCC--------------------
Confidence 357777544556666665555555543322233578999999999999999999999973
Q ss_pred chhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCC
Q psy4399 268 PVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 306 (379)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~ 306 (379)
++..+ ...++.|+|||+.|+.-.|.
T Consensus 469 -------------pV~~~-~~~e~~alGAA~lA~~a~G~ 493 (554)
T 3l0q_A 469 -------------AMLLP-EESEAMLLGSAMMGTVAAGV 493 (554)
T ss_dssp -------------EEEEE-SCSCHHHHHHHHHHHHHTTS
T ss_pred -------------eEEec-CCCcchHHHHHHHHHHHcCC
Confidence 44443 45679999999999987773
No 32
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=96.53 E-value=0.0038 Score=61.09 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=53.5
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhc
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDF 276 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (379)
++.+++.+.-.++..++........++.|.++||+++++.+.+.+.+.++
T Consensus 362 ~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g------------------------------ 411 (484)
T 2itm_A 362 ARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISG------------------------------ 411 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHHC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHhC------------------------------
Confidence 34444555444444444332222346889999999999999999999997
Q ss_pred ccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 277 FNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 277 ~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
.++..+..++.+.|+|||+.|+.-.|
T Consensus 412 ---~pV~~~~~~e~~~alGAA~lA~~~~g 437 (484)
T 2itm_A 412 ---QQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_dssp ---CCEEEESCTTSCHHHHHHHHHHHHHC
T ss_pred ---CeEEeCCCCCcccHHHHHHHHHHHcC
Confidence 35555555555699999999987766
No 33
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=96.46 E-value=0.01 Score=54.44 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCC
Q psy4399 34 RQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 113 (379)
Q Consensus 34 r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lG 113 (379)
...+.++-+..|++.-.+-.|.+|...+.+.....+ .....+|+|+|||+|.+++.+ ++.+.. ..+.++|
T Consensus 100 ~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~-----~~~~~lvvDIGGGStEl~~~~--~~~~~~---~~Sl~~G 169 (315)
T 1t6c_A 100 EEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLK-----PEGEVCVVDQGGGSTEYVFGK--GYKVRE---VISLPIG 169 (315)
T ss_dssp HHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTC-----CCSEEEEEEEETTEEEEEEEE--TTEEEE---EEEECCC
T ss_pred HHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcc-----cCCCEEEEEeCCCcEEEEEEe--CCceee---EEEEecc
Confidence 344455555779987666667777655555444332 245689999999999999986 454322 2226899
Q ss_pred HHHHHHHH
Q psy4399 114 GEDFDNRM 121 (379)
Q Consensus 114 G~~id~~l 121 (379)
+..+.+.+
T Consensus 170 ~v~l~e~~ 177 (315)
T 1t6c_A 170 IVNLTETF 177 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98877664
No 34
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=96.41 E-value=0.0068 Score=59.69 Aligned_cols=80 Identities=20% Similarity=0.158 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccc
Q psy4399 189 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQP 268 (379)
Q Consensus 189 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 268 (379)
++.++ ++.+++.+.-.++..++.... .. ++.|.++||+++++.+.+.+.+.++
T Consensus 375 ~~~~l---~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~g---------------------- 427 (511)
T 3hz6_A 375 TRAQI---LLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNLN---------------------- 427 (511)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHHT----------------------
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHHC----------------------
Confidence 45544 445555555555555554333 34 7899999999999999999999997
Q ss_pred hhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCC
Q psy4399 269 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 306 (379)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~ 306 (379)
.++.....+.++.|+|||+.|+.-.|.
T Consensus 428 -----------~pV~~~~~~~e~~alGaA~lA~~a~G~ 454 (511)
T 3hz6_A 428 -----------VSLLVKPDAHLHPLRGLAALAAVELEW 454 (511)
T ss_dssp -----------CEEEECCCGGGHHHHHHHHHHHHHTTS
T ss_pred -----------CeeEEecCCCCchHHHHHHHHHHHhCC
Confidence 345133468999999999999987773
No 35
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=96.40 E-value=0.0058 Score=59.93 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=54.8
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhc
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDF 276 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (379)
++.+++.+.-.+...++...... .++.|.++||+++++.+.+.+.+.++.
T Consensus 370 ~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~----------------------------- 419 (497)
T 2zf5_O 370 ARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADILNR----------------------------- 419 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHHTS-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhcCC-----------------------------
Confidence 34555555555666666543333 578899999999999999999999973
Q ss_pred ccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 277 FNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 277 ~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
++..+ .+.++.|+|||+.|+.-.|
T Consensus 420 ----pV~~~-~~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 420 ----KVIRP-VVKETTALGAAYLAGLAVD 443 (497)
T ss_dssp ----CEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred ----eEEEc-CCCcchHHHHHHHHHHHhC
Confidence 44433 3456999999999988776
No 36
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=96.26 E-value=0.0088 Score=58.77 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccc
Q psy4399 189 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQP 268 (379)
Q Consensus 189 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 268 (379)
++.++ ++-+++.+.-.++..++........++.|.++||+++++.+.+.+.+.++.
T Consensus 364 ~~~~l---~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~--------------------- 419 (504)
T 3ll3_A 364 QKPEM---ARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFNV--------------------- 419 (504)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHHTS---------------------
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhhCC---------------------
Confidence 35544 344455554444444443221223578999999999999999999999973
Q ss_pred hhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhCC
Q psy4399 269 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 306 (379)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~~ 306 (379)
++..+ .+.++.|+|||+.|+.-.|.
T Consensus 420 ------------pV~~~-~~~e~~alGaA~lA~~a~G~ 444 (504)
T 3ll3_A 420 ------------PIVTM-KEQQSGTLAAMFLARQALGL 444 (504)
T ss_dssp ------------CEEEE-SCSCHHHHHHHHHHHHHTTS
T ss_pred ------------eEEec-CCCCchhHHHHHHHHHHcCc
Confidence 44433 45679999999999987763
No 37
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=96.24 E-value=0.0081 Score=59.53 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=57.7
Q ss_pred HHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhh
Q psy4399 194 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLL 273 (379)
Q Consensus 194 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (379)
..+++-+++.+.-.++..++..+.....++.|.++||+++++.+.+.+.+.|+.
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~-------------------------- 460 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDA-------------------------- 460 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTS--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCC--------------------------
Confidence 344455566666566666665544444578999999999999999999999973
Q ss_pred hhcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 274 QDFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 274 ~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
++.. ..+.++.|+|||+.|+.-.|
T Consensus 461 -------pV~~-~~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 461 -------PVYV-IDTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp -------CEEE-CCCTTHHHHHHHHHHHHHHH
T ss_pred -------ceEe-cCCCCchHHHHHHHHHHHhC
Confidence 4433 35678999999999987665
No 38
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=96.13 E-value=0.0076 Score=59.37 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=51.0
Q ss_pred HHHHhhchhhHHHHH---HHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhh
Q psy4399 197 NADLFRGTMEPVEKS---LRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLL 273 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~---l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (379)
+.-+++.+.-.++.. +++.+. .++.|.++||+++++.+.+.+.+.++.
T Consensus 400 ~RAvlEgia~~~r~~l~~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~-------------------------- 450 (515)
T 3i8b_A 400 ARAFVEGLLCSQRDCLELIRSLGA---SITRILLIGGGAKSEAIRTLAPSILGM-------------------------- 450 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHHTS--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEECchhcCHHHHHHHHHHhCC--------------------------
Confidence 334444444444333 334333 478999999999999999999999973
Q ss_pred hhcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 274 QDFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 274 ~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
++..+ .+.++.|+|||+.|+.-.|
T Consensus 451 -------pV~~~-~~~e~~alGAA~lA~~a~G 474 (515)
T 3i8b_A 451 -------DVTRP-ATDEYVAIGAARQAAWVLS 474 (515)
T ss_dssp -------CEEEE-CCCCHHHHHHHHHHHHHHH
T ss_pred -------ceEec-CCcccHHHHHHHHHHHHcC
Confidence 44433 4567899999999987666
No 39
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=95.97 E-value=0.0093 Score=58.55 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=43.3
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++.+.+.+.+.++. ++... .+.++.|+|||+.|
T Consensus 404 ~~~~i~~~GG~aks~~~~Qi~Adv~g~---------------------------------pV~~~-~~~e~~alGaA~la 449 (501)
T 3g25_A 404 DVQSLRVDGGAVKNNFIMQFQADIVNT---------------------------------SVERP-EIQETTALGAAFLA 449 (501)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHTS---------------------------------EEEEE-SCCCHHHHHHHHHH
T ss_pred CCcEEEEecchhcCHHHHHHHHHHhCC---------------------------------ceEec-CCCcchHHHHHHHH
Confidence 478999999999999999999999973 44333 46779999999999
Q ss_pred HHHhCC
Q psy4399 301 AILHGD 306 (379)
Q Consensus 301 ~~l~~~ 306 (379)
+.-.|.
T Consensus 450 ~~a~G~ 455 (501)
T 3g25_A 450 GLAVGF 455 (501)
T ss_dssp HHHTTS
T ss_pred HHHhCc
Confidence 987773
No 40
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=95.91 E-value=0.0079 Score=59.16 Aligned_cols=51 Identities=25% Similarity=0.192 Sum_probs=42.3
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++.+.+.+.+.++. ++..... .++.|+|||+.|
T Consensus 400 ~~~~i~~~GGga~s~~~~Qi~ADv~g~---------------------------------pV~~~~~-~e~~alGaA~lA 445 (508)
T 3ifr_A 400 APQRFFASDGGTRSRVWMGIMADVLQR---------------------------------PVQLLAN-PLGSAVGAAWVA 445 (508)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTS---------------------------------CEEEEEC-CSTHHHHHHHHH
T ss_pred CCCEEEEeCCcccCHHHHHHHHHHhCC---------------------------------eEEecCC-CCchHHHHHHHH
Confidence 378999999999999999999999973 4444433 458899999999
Q ss_pred HHHhC
Q psy4399 301 AILHG 305 (379)
Q Consensus 301 ~~l~~ 305 (379)
+.-.|
T Consensus 446 ~~a~G 450 (508)
T 3ifr_A 446 AIGGG 450 (508)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 98777
No 41
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=95.86 E-value=0.014 Score=57.15 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=51.8
Q ss_pred HHHhhchhhHHHHHHHHhcC-CcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhc
Q psy4399 198 ADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDF 276 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (379)
..+++.+.-.+...++.... ....++.|.++||+++++.+.+.+.+.++.
T Consensus 374 rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~g~----------------------------- 424 (495)
T 2dpn_A 374 RAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLLGV----------------------------- 424 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHHTS-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHhCC-----------------------------
Confidence 34445555445544443311 123467899999999999999999999973
Q ss_pred ccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 277 FNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 277 ~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
++... .+.++.|+|||+.|+.-.|
T Consensus 425 ----pV~~~-~~~e~~alGaA~la~~a~G 448 (495)
T 2dpn_A 425 ----PVAVP-EVTETTALGAALMAGVGAG 448 (495)
T ss_dssp ----CEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred ----eeEec-CCcccHHHHHHHHHHhhcC
Confidence 44433 4556999999999987766
No 42
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=95.86 E-value=0.018 Score=56.83 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=43.6
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++.+.+.+.+.|+. ++..+ ...++.|+|||+.|
T Consensus 402 ~~~~i~v~GGgaks~~~~Qi~ADvlg~---------------------------------pV~~~-~~~E~~alGAA~lA 447 (526)
T 3ezw_A 402 RLHALRVDGGAVANNFLMQFQSDILGT---------------------------------RVERP-EVREVTALGAAYLA 447 (526)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHTS---------------------------------EEEEE-SCCCHHHHHHHHHH
T ss_pred CCCEEEEECchhhCHHHHHHHHHHHCC---------------------------------EEEeC-CCCchHHHHHHHHH
Confidence 378999999999999999999999973 44433 45678999999999
Q ss_pred HHHhCC
Q psy4399 301 AILHGD 306 (379)
Q Consensus 301 ~~l~~~ 306 (379)
+.-.|.
T Consensus 448 ~~a~G~ 453 (526)
T 3ezw_A 448 GLAVGF 453 (526)
T ss_dssp HHHTTS
T ss_pred HHHhCC
Confidence 988773
No 43
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=95.83 E-value=0.011 Score=59.17 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcCCcccccccCCCcccccccccc
Q psy4399 189 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQ 267 (379)
Q Consensus 189 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 267 (379)
++.++ +.-+++.+.-.++..++........++.|.++||++ +++.+.+.+.+.|+.
T Consensus 410 t~~~l---~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~ks~~~~Qi~ADv~g~-------------------- 466 (572)
T 3jvp_A 410 KPEEI---YRALLEATAFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFADVTNR-------------------- 466 (572)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEESSHHHHCHHHHHHHHHHHTS--------------------
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcCEEEEEcCchhhCHHHHHHHHHHHCC--------------------
Confidence 45554 444555554444444443222233578999999999 999999999999973
Q ss_pred chhhhhhhcccCccccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 268 PVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
++... .+.++.|+|||+.|+.-.|
T Consensus 467 -------------pV~~~-~~~e~~alGaA~lA~~a~G 490 (572)
T 3jvp_A 467 -------------EIKVA-ASKQTPALGAAMFASVAAG 490 (572)
T ss_dssp -------------CEEEB-CCSSHHHHHHHHHHHHHHC
T ss_pred -------------eeEec-CCCccHHHHHHHHHHHhcC
Confidence 44333 4678999999999998777
No 44
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=95.76 E-value=0.01 Score=58.43 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=43.2
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++.+.+.+.+.++. ++..+ .+.++.|+|||+.|
T Consensus 401 ~~~~i~~~GGga~s~~~~Qi~ADv~g~---------------------------------pV~~~-~~~e~~alGaA~lA 446 (510)
T 2p3r_A 401 RLHALRVDGGAVANNFLMQFQSDILGT---------------------------------RVERP-EVREVTALGAAYLA 446 (510)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHTS---------------------------------EEEEE-SCCCHHHHHHHHHH
T ss_pred CccEEEEeCchhcCHHHHHHHHHHhCC---------------------------------ceEec-CCCCcHHHHHHHHH
Confidence 378999999999999999999999973 44333 46679999999999
Q ss_pred HHHhCC
Q psy4399 301 AILHGD 306 (379)
Q Consensus 301 ~~l~~~ 306 (379)
+.-.|.
T Consensus 447 ~~a~G~ 452 (510)
T 2p3r_A 447 GLAVGF 452 (510)
T ss_dssp HHHHTS
T ss_pred HHHhCc
Confidence 987773
No 45
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=95.71 E-value=0.012 Score=57.75 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=43.5
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++.+.+.+.+.++. ++.. ..+.++.|+|||+.|
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~g~---------------------------------pV~~-~~~~e~~alGaA~lA 448 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADILDI---------------------------------DVQR-AANLETTALGAAYLA 448 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTS---------------------------------EEEE-CSSSCHHHHHHHHHH
T ss_pred CCCEEEEecccccCHHHHHHHHHHhCC---------------------------------eEEe-cCCCcchhHHHHHHH
Confidence 378999999999999999999999973 4433 356779999999999
Q ss_pred HHHhCC
Q psy4399 301 AILHGD 306 (379)
Q Consensus 301 ~~l~~~ 306 (379)
+.-.|.
T Consensus 449 ~~a~G~ 454 (506)
T 3h3n_X 449 GLAVGF 454 (506)
T ss_dssp HHHTTS
T ss_pred HHHhCc
Confidence 987773
No 46
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=95.71 E-value=0.0098 Score=58.66 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=42.2
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++.+.+.+.+.++. ++..+ .+.++.|+|||+.|
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvlg~---------------------------------pV~~~-~~~e~~alGAA~lA 470 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLLDA---------------------------------PVDRP-VILETTALGVAWLA 470 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHHTS---------------------------------CEEEE-SCCCHHHHHHHHHH
T ss_pred CcceEEEeCccccCHHHHHHHHHHhCC---------------------------------eEEec-CCCccHHHHHHHHH
Confidence 468899999999999999999999973 44433 45679999999999
Q ss_pred HHHhCC
Q psy4399 301 AILHGD 306 (379)
Q Consensus 301 ~~l~~~ 306 (379)
+.-.|.
T Consensus 471 ~~a~G~ 476 (520)
T 4e1j_A 471 GSRAGV 476 (520)
T ss_dssp HHHHTS
T ss_pred HHHcCC
Confidence 987773
No 47
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=95.44 E-value=0.016 Score=56.85 Aligned_cols=50 Identities=26% Similarity=0.305 Sum_probs=41.6
Q ss_pred c-CEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 222 I-HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 222 i-~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
+ +.|.++||+++++.+.+.+.+.++. ++... .+.++.|+|||+.|
T Consensus 407 ~~~~i~~~GG~a~s~~~~Q~~Adv~g~---------------------------------pV~~~-~~~e~~alGaA~la 452 (503)
T 2w40_A 407 MLHVLRCDGGMTKNKPFMQFNSDIINT---------------------------------KIEVS-KYKEVTSLGAAVLA 452 (503)
T ss_dssp CCSCEEEESGGGGCHHHHHHHHHHHTS---------------------------------CEEEE-SCSCHHHHHHHHHH
T ss_pred ccceEEEeCccccCHHHHHHHHHHHCC---------------------------------eEEec-CCCcchHHHHHHHH
Confidence 5 7799999999999999999999973 44433 45569999999999
Q ss_pred HHHhC
Q psy4399 301 AILHG 305 (379)
Q Consensus 301 ~~l~~ 305 (379)
+.-.|
T Consensus 453 ~~~~G 457 (503)
T 2w40_A 453 GLEVK 457 (503)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 87766
No 48
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=95.43 E-value=0.036 Score=54.35 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=42.5
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++.+.+.+.+.++. ++..+ .+.++.|+|||+.|
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~g~---------------------------------pV~~~-~~~e~~alGaA~lA 448 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQLGV---------------------------------DVVRP-KVAETTALGAAYAA 448 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTS---------------------------------CEEEE-SCSCHHHHHHHHHH
T ss_pred CcceEEEeCCcccCHHHHHHHHHHhCC---------------------------------eEEeC-CCCcchHHHHHHHH
Confidence 368899999999999999999999973 44333 45679999999999
Q ss_pred HHHhC
Q psy4399 301 AILHG 305 (379)
Q Consensus 301 ~~l~~ 305 (379)
+.-.|
T Consensus 449 ~~~~G 453 (504)
T 2d4w_A 449 GIAVG 453 (504)
T ss_dssp HHHHT
T ss_pred HhhcC
Confidence 88776
No 49
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=95.32 E-value=0.03 Score=51.36 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCC
Q psy4399 34 RQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 113 (379)
Q Consensus 34 r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lG 113 (379)
...+.++-+..|++.-.+-.|-+|...+.+.....+. .+...+|+|+|||+|.+++.+ ++..... ...++|
T Consensus 92 ~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~----~~~~~lviDIGGGStEl~~~~--~~~~~~~---~Sl~lG 162 (315)
T 3mdq_A 92 QVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPM----EDHISLAMDIGGGSVEFIIGN--KNEILWK---QSFEIG 162 (315)
T ss_dssp HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCC----TTCCEEEEEECSSCEEEEEEC--SSCEEEE---EEESCC
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCC----CCCCEEEEEeCCCceEEEEEE--CCeEeee---EEEech
Confidence 3444555566799875555556665444444433321 235689999999999999997 4432222 126788
Q ss_pred HHHHHHH
Q psy4399 114 GEDFDNR 120 (379)
Q Consensus 114 G~~id~~ 120 (379)
.-.+.+.
T Consensus 163 ~vrl~e~ 169 (315)
T 3mdq_A 163 GQRLIDR 169 (315)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 8766554
No 50
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=95.30 E-value=0.003 Score=56.77 Aligned_cols=46 Identities=37% Similarity=0.770 Sum_probs=0.0
Q ss_pred cccccccccccccccccccccchhhhhhhhcCceeeeecCCccccCC
Q psy4399 333 YGVDIDTIMNNLAIKIPLQQVKNTVEELINEGHIYTTIDDNHYQTVD 379 (379)
Q Consensus 333 ~~~~~~~i~~~~~~~ip~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 379 (379)
-|+.++.|..... .+|..++++++++++++|++|+|+||+||+.+|
T Consensus 223 ~Gi~~~~I~~~l~-~~~~~~v~~al~~L~~eG~IYsTiDd~h~k~t~ 268 (270)
T 2pi2_A 223 EGLNFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTD 268 (270)
T ss_dssp -----------------------------------------------
T ss_pred cCCCHHHHHHHhc-CCCHHHHHHHHHHHHhCCEEeccccccceeecc
Confidence 5777776665442 277789999999999999999999999999765
No 51
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=94.92 E-value=0.032 Score=54.52 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=39.4
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|.++||+++++.+.+.+.+.++. ++.... .++.|+|||+.|
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvlg~---------------------------------pV~~~~--~e~~alGaa~~A 437 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADACGI---------------------------------RVIAGP--VEASTLGNIGIQ 437 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHTS---------------------------------EEEECC--TTHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHHCC---------------------------------eeecCC--ccHhHHHHHHHH
Confidence 368899999999999999999999973 444332 589999997776
Q ss_pred HHHhC
Q psy4399 301 AILHG 305 (379)
Q Consensus 301 ~~l~~ 305 (379)
..-.+
T Consensus 438 ~~a~~ 442 (489)
T 2uyt_A 438 LMTLD 442 (489)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 55433
No 52
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=94.71 E-value=1.2 Score=40.45 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcC-CCCCcEEEEcCCCCCHH----------------HHHHHHHHHHHcCCceeeeccchHHHHHHhccc
Q psy4399 3 LTKMKETAEAYLG-KTVSNAVITVPAYFNDS----------------QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLD 65 (379)
Q Consensus 3 L~~l~~~a~~~~~-~~~~~~vitvPa~~~~~----------------~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~ 65 (379)
+..+.+..+.... .++..+.|++|...+.. -++.+++. .|++ +.+.++..|+|++....
T Consensus 41 ~~~i~~~i~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~~l~w~~~~l~~~l~~~---~~~p-v~v~NDa~aaal~E~~~ 116 (321)
T 3vgl_A 41 VDAICAAVAGASEGHDVEAVGIGAAGYVDDKRATVLFAPNIDWRHEPLKDKVEQR---VGLP-VVVENDANAAAWGEYRF 116 (321)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEESSEECTTSSCEEECSSSCCEEECHHHHHHHH---HCSC-EEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCceEEEEeccccEeCCCCEEEeCCCCCCcCCCHHHHHhhh---hCCC-EEEEehhhhHHHHHHHh
Confidence 4555555555543 35667888888654432 13334333 3775 68999999999885433
Q ss_pred cccCCCCCCCCceEEEEEcCCceeEEEEEE
Q psy4399 66 KKVGSAAGSGERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 66 ~~~~~~~~~~~~~vlVvD~GggT~disv~~ 95 (379)
.... ...+++++-+|.| .-..++.
T Consensus 117 g~~~-----~~~~~~~l~~GtG-iG~gii~ 140 (321)
T 3vgl_A 117 GAGQ-----GHDDVICITLGTG-LGGGIII 140 (321)
T ss_dssp STTT-----TCSSEEEEEESSS-EEEEEEE
T ss_pred CCCC-----CCCCEEEEEeCcc-eEEEEEE
Confidence 2211 3466788888888 5555554
No 53
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=94.50 E-value=0.3 Score=44.61 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHc--CCCCCcEEEEcCCC----------------CCHHHHHHHHHH-HHHc-CCceeeeccchHHHHHH
Q psy4399 2 VLTKMKETAEAYL--GKTVSNAVITVPAY----------------FNDSQRQATKDS-GTIA-GLNVLRIINEPTAAAIA 61 (379)
Q Consensus 2 iL~~l~~~a~~~~--~~~~~~~vitvPa~----------------~~~~~r~~l~~a-~~~A-Gl~~~~lv~Ep~Aaa~~ 61 (379)
+++.+.+..++.+ ..++..+.|++|.. |... .+++. .+.. |++ +.+.++..|+|++
T Consensus 59 ~~~~i~~~i~~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~~l~~w~~~---~l~~~l~~~~~~~p-V~v~NDa~aaala 134 (321)
T 3r8e_A 59 FVESMKLEIGNFLKQYPIVKGVGIGWPGLVSLDRTKVILLPNIPSVVNV---PIVEILRSEFPHIH-FKIENDAKCAALG 134 (321)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEESSEECTTSCCEEEBTTBCCCCSC---CHHHHHHHHCTTSE-EEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEEecccEECCCCEEEeCCCCccccCC---CHHHHHHHHcCCCC-EEEEchHHHHHHH
Confidence 3455555555443 45677788888764 4321 22222 2334 665 6899999999988
Q ss_pred hccccccCCCCCCCCceEEEEEcCCceeEEEEEE
Q psy4399 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 62 ~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~ 95 (379)
-....... ...+++++-+|.| .-..++.
T Consensus 135 E~~~g~~~-----~~~~~v~l~~GtG-iG~gii~ 162 (321)
T 3r8e_A 135 EYYFGENK-----RMQTFILLALGTG-VGSGVMM 162 (321)
T ss_dssp HHHHSTTT-----TCSSEEEEEESSS-EEEEEEE
T ss_pred HHHhCCCC-----CCCcEEEEEECCc-eEEEEEE
Confidence 54432211 3456788888888 5555554
No 54
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=94.06 E-value=2.4 Score=38.62 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=37.7
Q ss_pred cCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 222 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 222 i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
++.|+|-||.+..+.+.+.+++.+...-.... ...++....-.+.|.++|||..+
T Consensus 270 p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~------------------------~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 270 PHVVALGGGLSNFELIYEEMPKRVPKYLLSVA------------------------KCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp CSEEEEESGGGGCTHHHHHHHHHGGGGSCTTC------------------------CCCEEEECSCGGGHHHHHHHHTT
T ss_pred CCEEEEeCcccchHHHHHHHHHHHHHHhcccc------------------------CCCEEEECCCCCcHHHHHHHHHH
Confidence 47899999999888888888888764211000 00345556667889999999653
No 55
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=92.80 E-value=0.22 Score=48.84 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCceeeecc-chHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCH
Q psy4399 36 ATKDSGTIAGLNVLRIIN-EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 114 (379)
Q Consensus 36 ~l~~a~~~AGl~~~~lv~-Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG 114 (379)
.+.++-+..|++. .+++ |-+|...+.+.....+ .....+|+|+|||+|.+++.+ ++..... ...++|.
T Consensus 101 fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~-----~~~~~lviDIGGGStEl~~~~--~~~~~~~---~Sl~lG~ 169 (513)
T 1u6z_A 101 FLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP-----EKGRKLVIDIGGGSTELVIGE--NFEPILV---ESRRMGC 169 (513)
T ss_dssp HHHHHTTTCSSCE-EECCHHHHHHHHHHHHHHHSC-----CCSCEEEEEECSSCEEEEEEE--TTEEEEE---EEESCCH
T ss_pred HHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhcc-----CCCCEEEEEECCCcEEEEEEe--CCeeeEE---EEEeccH
Confidence 3444444558876 4555 4444444444443332 122689999999999999886 4443222 1268999
Q ss_pred HHHHHHH
Q psy4399 115 EDFDNRM 121 (379)
Q Consensus 115 ~~id~~l 121 (379)
-.+.+.+
T Consensus 170 vrlte~f 176 (513)
T 1u6z_A 170 VSFAQLY 176 (513)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887665
No 56
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=92.79 E-value=0.12 Score=47.82 Aligned_cols=81 Identities=20% Similarity=0.278 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCceeeeccchHHHHHHh-ccccccCCCCCCCCceEEEEEcCCceeEEEEEEE--eC--CeEEEEEecCC
Q psy4399 35 QATKDSGTIAGLNVLRIINEPTAAAIAY-GLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI--ED--GIFEVKSTAGD 109 (379)
Q Consensus 35 ~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~-~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~--~~--~~~~~~~~~~~ 109 (379)
..+.++-+..|++. .+++-.+=|.+.| +.....+. ......++|+|+|||+|++++++- .+ +.+.. ...
T Consensus 106 ~fl~~v~~~tGi~i-eVIsG~eEA~l~~~gv~~~~~~--~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~---~~S 179 (343)
T 3cer_A 106 EFEDEIERILGVRP-EVIPGTEEADLSFLGATSVVNR--DDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQG---AFS 179 (343)
T ss_dssp HHHHHHHHHHSSCC-EECCHHHHHHHHHHHHHSSCCT--TTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSE---EEE
T ss_pred HHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhCcc--ccccCCEEEEEeCCCceEEEEeecCccCcccccce---eEE
Confidence 34455555669876 5555444444444 33322221 002356899999999999999863 11 11111 122
Q ss_pred CCCCHHHHHHHH
Q psy4399 110 THLGGEDFDNRM 121 (379)
Q Consensus 110 ~~lGG~~id~~l 121 (379)
.++|+..+.+.+
T Consensus 180 lplG~v~lt~~~ 191 (343)
T 3cer_A 180 MNIGSVRMTERH 191 (343)
T ss_dssp ESCCHHHHHHHT
T ss_pred EehhHHHHHHHh
Confidence 689998887765
No 57
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=92.44 E-value=4.6 Score=39.78 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHh-hchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccc
Q psy4399 190 RARFEELNADLF-RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQP 268 (379)
Q Consensus 190 r~~~~~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 268 (379)
..++...++..+ +-+.+.+..+.+..+ ++.|+|.||.+....+++.+.+..+-
T Consensus 280 ~~dIAasfQ~~l~~~L~~~~~~a~~~tg-----~~~l~LaGGVa~N~~L~~~l~~~~~~--------------------- 333 (576)
T 3ven_A 280 YRDLAATAQAALERAVFGLADSVLARTG-----ERTLFVAGGVGLNATMNGKLLTRSTV--------------------- 333 (576)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHTSTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEecchHHHHHHHHHHHHHhcCC---------------------
Confidence 445544444433 333444555555544 57999999999999999999865431
Q ss_pred hhhhhhhcccCccccC-CCChhhHHHhhHHHHHHHHhCC
Q psy4399 269 VQKLLQDFFNGKELNK-SINPDEAVAYGAAVQAAILHGD 306 (379)
Q Consensus 269 ~~~~~~~~~~~~~~~~-~~~p~~aVA~Gaa~~a~~l~~~ 306 (379)
..+.. +.--|.++++|+|+++....|.
T Consensus 334 -----------~~v~vpp~~~D~G~aiGqA~~a~~~~g~ 361 (576)
T 3ven_A 334 -----------DKMFVPPVASDIGVSLGAAAAVAVELGD 361 (576)
T ss_dssp -----------SEEECCTTCSGGGHHHHHHHHHHHHTTC
T ss_pred -----------CeEEeCCCCCchHHHHHHHHHHHHHcCC
Confidence 01111 2234889999999999877664
No 58
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=92.25 E-value=3.9 Score=37.33 Aligned_cols=39 Identities=21% Similarity=0.418 Sum_probs=28.7
Q ss_pred chhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 203 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 203 ~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
.+.+.+.+..+..+ ++.|+|+||.+....+++.+.+.+.
T Consensus 231 ~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~ 269 (330)
T 2ivn_A 231 ALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTE 269 (330)
T ss_dssp HHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHH
Confidence 33444444444433 5689999999999999999999874
No 59
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=91.52 E-value=0.27 Score=48.06 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCC
Q psy4399 34 RQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 113 (379)
Q Consensus 34 r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lG 113 (379)
...+.++-+..|++.-.+=.|-+|...+.+.....+ ....+|+|+|||+|.+++.+ ++.... ....++|
T Consensus 103 ~~fl~~i~~~tG~~ievIsG~EEA~l~~~gv~~~~~------~~~~lvvDIGGGStEl~~~~--~~~~~~---~~Sl~lG 171 (508)
T 3hi0_A 103 PDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFY------QPDGIAGDLGGGSLELIDIK--DKSCGE---GITLPLG 171 (508)
T ss_dssp HHHHHHHHHHHTSCEEECCHHHHHHHHHHHHHHHSS------SCEEEEEEECSSCEEEEEEE--TTEECC---CEEESCC
T ss_pred HHHHHHHHHHHCCCeEEecHHHHHHHHHHHHHhcCC------CCCeEEEEeCCCceEEEEee--CCeeee---EEEecce
Confidence 444555556679977444445555544444444332 22349999999999999987 443321 2226889
Q ss_pred HHHHHHH
Q psy4399 114 GEDFDNR 120 (379)
Q Consensus 114 G~~id~~ 120 (379)
.-.+.+.
T Consensus 172 ~vrl~e~ 178 (508)
T 3hi0_A 172 GLRLSEQ 178 (508)
T ss_dssp HHHHHHH
T ss_pred EEehhhc
Confidence 8877753
No 60
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=91.38 E-value=0.16 Score=49.41 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=49.1
Q ss_pred HHHHHHhhc--hhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHH-cCCcccccccCCCccccccccccchhh
Q psy4399 195 ELNADLFRG--TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF-FNGKELNKSINPDVTTLCWSVAQPVQK 271 (379)
Q Consensus 195 ~~~~~~~~~--i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (379)
.+....++. +.-.++..++.... .+.|.++||+++++...+.+.+. |+.
T Consensus 363 ~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~g~------------------------ 414 (482)
T 3h6e_A 363 WFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRPDC------------------------ 414 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHSTTS------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcCCC------------------------
Confidence 344444443 44455555554332 27899999999999999999999 973
Q ss_pred hhhhcccCccccCCCChhhHHHhhHHHHHHH
Q psy4399 272 LLQDFFNGKELNKSINPDEAVAYGAAVQAAI 302 (379)
Q Consensus 272 ~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~~ 302 (379)
++..+ ...++.|+|||+.|+.
T Consensus 415 ---------pV~~~-~~~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 415 ---------AVYTA-NAHNDVSFGALRLIDP 435 (482)
T ss_dssp ---------EEEEE-SSCCCTTGGGHHHHCT
T ss_pred ---------eEEEc-CCCchHHHHHHHHhCc
Confidence 44444 3456889999999874
No 61
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=89.57 E-value=12 Score=33.99 Aligned_cols=46 Identities=2% Similarity=-0.067 Sum_probs=35.4
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHc-C--CceeeeccchHHHHHHh
Q psy4399 17 TVSNAVITVPAYFNDSQRQATKDSGTIA-G--LNVLRIINEPTAAAIAY 62 (379)
Q Consensus 17 ~~~~~vitvPa~~~~~~r~~l~~a~~~A-G--l~~~~lv~Ep~Aaa~~~ 62 (379)
++..+.|++|...+......+++..+.. | .-.+.+.++..|+++++
T Consensus 70 ~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~ 118 (347)
T 2ch5_A 70 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA 118 (347)
T ss_dssp CBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH
T ss_pred ceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh
Confidence 5778999999998877666777766654 3 13578999999999884
No 62
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=89.14 E-value=0.14 Score=40.55 Aligned_cols=42 Identities=31% Similarity=0.588 Sum_probs=20.4
Q ss_pred cccceeEeecccccccccCCCCcccc------cccccccccccccccccchhhhhhhhcCceeeeecCCc
Q psy4399 311 VQDLLLLDVTPQLAWRSFKNDSYGVD------IDTIMNNLAIKIPLQQVKNTVEELINEGHIYTTIDDNH 374 (379)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~ip~~~~~~~~~~~~~~~~~~~t~~~~~ 374 (379)
+++++++||+|+ ++|++ ...|++|. ++|+. +...|+|..|||
T Consensus 14 ~~d~~l~Dv~p~---------slGIe~~~g~~~~lI~rnt--~iP~~-----------k~~~f~t~~dnQ 61 (135)
T 1q5l_A 14 PRGSHMVDVTPL---------SLGIETMGGVMTTLIAKNT--TIPTK-----------HSQVFSTAEDNQ 61 (135)
T ss_dssp -------CCCSS---------CCCEEETTTEECCSSCSSS--CSSBC-----------CEEEECCCSSSC
T ss_pred eCcEEEEEeecC---------cEEEEEECCEEEEEEcCCC--eEeEe-----------EeEEEEeccCCc
Confidence 568899999999 55544 34566666 45542 334555555554
No 63
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=87.93 E-value=7 Score=38.26 Aligned_cols=193 Identities=16% Similarity=0.168 Sum_probs=92.6
Q ss_pred CCCcEEEEc-CCCCCHHHHHHH--HHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEE
Q psy4399 17 TVSNAVITV-PAYFNDSQRQAT--KDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSI 93 (379)
Q Consensus 17 ~~~~~vitv-Pa~~~~~~r~~l--~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv 93 (379)
+++.+++|. |..++....-.. +..+...|++.+. ++--.|=+++....... ... +++-+-||+|.+-.
T Consensus 72 ~id~ia~~~gPG~~~~l~vg~~~ak~la~~~~~p~~~-v~h~~aH~~~~~~~~~~-------~~p-~~l~vsGg~t~~~~ 142 (540)
T 3en9_A 72 EIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIG-VNHCIAHIEIGKLTTEA-------EDP-LTLYVSGGNTQVIA 142 (540)
T ss_dssp GCCEEEEEEESSCHHHHHHHHHHHHHHHHHHTCCEEE-EEHHHHHHHHHHHHSSC-------SSC-EEEEECSSCEEEEE
T ss_pred HCcEEEEecCCCchhhHHHHHHHHHHHHHHhCCCeeE-eccHHHHHHHHHHhcCC-------CCC-cEEEEcCCCcEEEE
Confidence 577777776 666554322211 2233444766544 34434333332222221 122 56666678887654
Q ss_pred EEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHhhhcCCCceeEEEeecccC
Q psy4399 94 LTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 173 (379)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~ 173 (379)
+. ++.+++++...+. --|+-||.. +..+ +...+..+ .+. ..|...+. .+.++....
T Consensus 143 ~~--~~~~~~lg~t~d~-s~G~~~D~~-a~~l--------gl~~~gg~-~ie---~lA~~g~~--------~~~~p~~~~ 198 (540)
T 3en9_A 143 YV--SKKYRVFGETLDI-AVGNCLDQF-ARYV--------NLPHPGGP-YIE---ELARKGKK--------LVDLPYTVK 198 (540)
T ss_dssp EE--TTEEEEEEEBSSS-CHHHHHHHH-HHHT--------TCCSSCHH-HHH---HHHHTCCC--------CCCCCCCEE
T ss_pred Ee--CCceEEEeeccch-HhHHHHHHH-HHHc--------CCCCCCHH-HHH---HHHHcCCc--------cCcCCCCCC
Confidence 44 6889998876653 446777742 2222 22222212 222 22222110 111111111
Q ss_pred Ccceeee-eeccccc-----ccHHHHHHHHH-HHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 174 GVDFYTS-VTRARLS-----VTRARFEELNA-DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 174 ~~~~~~~-i~~~~~~-----ltr~~~~~~~~-~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
+.++++. +...-+. .+.+++...++ .+++.+.+.+.++++..+ ++.|+|+||.+....+++.+++.+.
T Consensus 199 ~~~~sfsgl~~~~~~~~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~-----~~~~~~~GGVa~N~~l~~~l~~~~~ 273 (540)
T 3en9_A 199 GMDIAFSGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTN-----KGEVMLVGGVAANNRLREMLKAMCE 273 (540)
T ss_dssp TTEECCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHHHHH
T ss_pred CcceecHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEeCcHHhHHHHHHHHHHHHH
Confidence 2222210 0000000 01233332222 233444455556666554 4689999999999999999999886
Q ss_pred C
Q psy4399 247 G 247 (379)
Q Consensus 247 ~ 247 (379)
.
T Consensus 274 ~ 274 (540)
T 3en9_A 274 G 274 (540)
T ss_dssp H
T ss_pred h
Confidence 4
No 64
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=87.27 E-value=16 Score=32.63 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=41.2
Q ss_pred CCCCCcEEEEcCCCC----------------CHH-HHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCc
Q psy4399 15 GKTVSNAVITVPAYF----------------NDS-QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGER 77 (379)
Q Consensus 15 ~~~~~~~vitvPa~~----------------~~~-~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~ 77 (379)
..++..+.|++|... ... -++.+++ ..|++ +.+.++..|+|++-....... ...
T Consensus 55 ~~~i~gigi~~pG~vd~~~g~v~~~~~~~~w~~~~l~~~l~~---~~~~p-v~v~NDa~aaal~E~~~g~~~-----~~~ 125 (302)
T 3vov_A 55 GVRGEAIGLGTPGPLDFRRGVIRFAPNIPGVQDFPIRRILEE---ATGRP-VFLENDANAAALAEHHLGAAQ-----GEE 125 (302)
T ss_dssp TCCCSSEEEEESSCEETTTTEEC---CCTTCTTCCHHHHHHH---HHSSC-EEEEEHHHHHHHHHHHHSTTT-----TCS
T ss_pred cCCceEEEEEecccEeCCCCEEEcCCCCCCcCCCChHHHHHH---hhCCC-EEEEechHHHHHHHHHhCCCC-----CCC
Confidence 456777888877643 211 1223332 34665 689999999998764432211 345
Q ss_pred eEEEEEcCCceeEEEEE
Q psy4399 78 NVLIFDLGGGTFDVSIL 94 (379)
Q Consensus 78 ~vlVvD~GggT~disv~ 94 (379)
+++++-+|-| .-..++
T Consensus 126 ~~~~l~~GtG-iG~gii 141 (302)
T 3vov_A 126 SSLYLTVSTG-IGGGVV 141 (302)
T ss_dssp CEEEEEESSS-EEEEEE
T ss_pred CEEEEEECCc-eeEEEE
Confidence 6788888877 334444
No 65
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=87.22 E-value=5.6 Score=35.96 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCCCHHH----------------HHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 18 VSNAVITVPAYFNDSQ----------------RQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~----------------r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
+..+.|++|...+... ++.+++. .|++ +.+.++..|+|++-....... ....+++
T Consensus 81 i~~igi~~pG~vd~~~g~v~~~~~~~~~~~~l~~~l~~~---~~~p-v~v~NDa~aaalgE~~~g~~~-----~~~~~v~ 151 (327)
T 2ap1_A 81 KGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSAR---LDRD-VRLDNDANCFALSEAWDDEFT-----QYPLVMG 151 (327)
T ss_dssp CCEEEEEESSBSCCTTSCCBCTTCTTTTTSCHHHHHHHH---HTSC-EEEEEHHHHHHHHHHTSTTGG-----GCSEEEE
T ss_pred ccEEEEEeeeeEECCCCEEEccCCCccCCCChHHHHHHH---HCCC-EEEecHHHHHHHHHHHhCcCC-----CCCcEEE
Confidence 5668888886543211 1223332 3665 689999999998753322111 2456788
Q ss_pred EEcCCceeEEEEEE
Q psy4399 82 FDLGGGTFDVSILT 95 (379)
Q Consensus 82 vD~GggT~disv~~ 95 (379)
+-+|.| .-..++.
T Consensus 152 l~~GtG-iG~giv~ 164 (327)
T 2ap1_A 152 LILGTG-VGGGLVL 164 (327)
T ss_dssp EEESSS-EEEEEEE
T ss_pred EEECCc-EEEEEEE
Confidence 888887 4455443
No 66
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=87.00 E-value=1.3 Score=45.43 Aligned_cols=57 Identities=21% Similarity=0.419 Sum_probs=41.6
Q ss_pred cCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 222 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 222 i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
++.|+|+||.+....+++.+.+.+...++++..++. .+ --|..+|+|.|++|+
T Consensus 706 ~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~--------------------------vP-~nDgGiALGQA~iA~ 758 (772)
T 4g9i_A 706 VKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTE--------------------------VP-RGDNGVNVGQAFLGG 758 (772)
T ss_dssp CSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTT--------------------------SC-SSGGGHHHHHHHHHH
T ss_pred cCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCC--------------------------CC-CCcchHHHHHHHHHH
Confidence 578999999999999999999999764443332220 01 138889999998875
Q ss_pred H-HhC
Q psy4399 302 I-LHG 305 (379)
Q Consensus 302 ~-l~~ 305 (379)
. |.+
T Consensus 759 ~~L~~ 763 (772)
T 4g9i_A 759 LYLEG 763 (772)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 4 444
No 67
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=86.01 E-value=1.4 Score=40.45 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=47.8
Q ss_pred hhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCc
Q psy4399 201 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGK 280 (379)
Q Consensus 201 ~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (379)
.+.+.+.+.+.++..+ ++.|+|+||.+....+++.+.+.+...+.++..|+
T Consensus 234 ~~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~------------------------ 284 (334)
T 3eno_A 234 FAMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTD------------------------ 284 (334)
T ss_dssp HHHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCC------------------------
T ss_pred HHHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecC------------------------
Confidence 3444555555555544 46899999999999999999998853222222211
Q ss_pred cccCCCChhhHHHhhHHHHHHHHhC
Q psy4399 281 ELNKSINPDEAVAYGAAVQAAILHG 305 (379)
Q Consensus 281 ~~~~~~~p~~aVA~Gaa~~a~~l~~ 305 (379)
...--|.++++|+|.+.....|
T Consensus 285 ---~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 285 ---REYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp ---TTTTSCCTHHHHHHHHHHHHTT
T ss_pred ---CCCCChHHHHHHHHHHHHHHcC
Confidence 0112367899999977666665
No 68
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=85.78 E-value=1.7 Score=44.55 Aligned_cols=57 Identities=25% Similarity=0.246 Sum_probs=40.6
Q ss_pred cCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 222 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 222 i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
++.|+|+||.++...+++.+.+.+...+.+...++ ...--|-++|+|.|+.|+
T Consensus 694 ~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~---------------------------~~p~~DgGialGQA~~a~ 746 (761)
T 3vth_A 694 INKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNS---------------------------KVPCNDGGISLGQAVIAN 746 (761)
T ss_dssp CCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECS---------------------------SSCSSGGGHHHHHHHHHH
T ss_pred CCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecC---------------------------CCCCCchHHHHHHHHHHH
Confidence 57899999999999999999998854322222111 011238899999999987
Q ss_pred HHhC
Q psy4399 302 ILHG 305 (379)
Q Consensus 302 ~l~~ 305 (379)
...+
T Consensus 747 ~~~~ 750 (761)
T 3vth_A 747 KILE 750 (761)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 5544
No 69
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=85.22 E-value=1.3 Score=41.11 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHH-c-------CCceeeeccchHHHHHHhcc-ccccCCCCCCCCceEEEEEcCCceeEEEEEE
Q psy4399 31 DSQRQATKDSGTI-A-------GLNVLRIINEPTAAAIAYGL-DKKVGSAAGSGERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 31 ~~~r~~l~~a~~~-A-------Gl~~~~lv~Ep~Aaa~~~~~-~~~~~~~~~~~~~~vlVvD~GggT~disv~~ 95 (379)
+.+++.+.+.++. . |+ .+++|+-.+=|.+.|.. ......-.....++++|+|+|||+|.++...
T Consensus 86 n~~~~~~l~~v~~~~~~~~~~~g~-~v~VIsG~eEa~~~~~gv~~~l~~~~~~~~~t~~v~DiGGGStei~~~~ 158 (353)
T 3aap_A 86 QSQQKKYYDELEYWFRQQSQWQLV-EAKTITGNDEALFDWLAVNYKLDTLKSVQNKSVGVMDMGGASVQIVFPM 158 (353)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEE-EEEECCHHHHHHHHHHHHHHHTTCSSSCCSSCEEEEEECSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCC-eEEECChHHHHHHHHHHHHHHhhhccccccccEEEEEeCCCceEEEEec
Confidence 3345555554444 3 54 45777655555555432 1111100001235699999999999999874
No 70
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=84.04 E-value=2.6 Score=39.09 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=32.7
Q ss_pred HHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 199 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 199 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
.+.+-+...|-+.++.... .++.|+++||+++.|.+.++|++.++.
T Consensus 264 TLt~~TA~sIa~~~~~~~~---~~~~v~vcGGGa~N~~Lm~~L~~~l~~ 309 (371)
T 3qbx_A 264 TLLELSARSISESLLDAQP---DCEEVLVCGGGAFNTALMKRLAMLMPE 309 (371)
T ss_dssp HHHHHHHHHHHHHHHHHCT---TCCEEEEESGGGGCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhccC---CCceEEEECCccCcHHHHHHHHHhCCC
Confidence 3344444555555544332 357899999999999999999999863
No 71
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=82.73 E-value=0.42 Score=39.86 Aligned_cols=34 Identities=29% Similarity=0.145 Sum_probs=15.4
Q ss_pred ccceeEeecccccccccCCCCcccccccccccccccccc
Q psy4399 312 QDLLLLDVTPQLAWRSFKNDSYGVDIDTIMNNLAIKIPL 350 (379)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~ 350 (379)
..+.++||+|+..+.... .|+....|++|+ ++|+
T Consensus 18 ~~f~l~DV~P~slGie~~---gg~~~~lI~rnt--~iP~ 51 (182)
T 3n8e_A 18 LYFQSMDVTPLSLGIETL---GGVFTKLINRNT--TIPT 51 (182)
T ss_dssp ------CBCSSCEEEECT---TSBEEEEECTTC--BSSE
T ss_pred CCEEEEEecCCEEEEEEe---CCEEEEEEeCCC--ccCE
Confidence 467799999994333222 133345666776 4554
No 72
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=82.15 E-value=2.9 Score=41.95 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=38.5
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
.++.|+|+||.++...+++.+.+.+. +.++..++ ...--|-++|+|.|+.|
T Consensus 599 g~~~VvLsGGV~~N~~Lre~L~~~l~--g~~v~~p~---------------------------~~p~~DnGiaLGQA~~a 649 (657)
T 3ttc_A 599 GITTLVFSGGVIHNRLLRARLAHYLA--DFTLLFPQ---------------------------SLPAGDGGLSLGQGVIA 649 (657)
T ss_dssp TCCEEEEESGGGGCHHHHHHHHHHTT--TSEEECCC---------------------------SSCSSGGGHHHHHHHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHHHhC--CCEEEecC---------------------------CCCCCcHHHHHHHHHHH
Confidence 35799999999999999999999884 22222111 11234889999999988
Q ss_pred HH
Q psy4399 301 AI 302 (379)
Q Consensus 301 ~~ 302 (379)
+.
T Consensus 650 ~~ 651 (657)
T 3ttc_A 650 AA 651 (657)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 73
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=78.64 E-value=4.1 Score=37.73 Aligned_cols=49 Identities=14% Similarity=0.305 Sum_probs=34.9
Q ss_pred HHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 195 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 195 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
++...+.+-+...|.+.++... ..+.|+++||+++.|.+.++|++.++.
T Consensus 267 Dv~ATLt~~TA~sIa~~~~~~~----~~~~v~vcGGGa~N~~Lm~~L~~~l~~ 315 (370)
T 3cqy_A 267 DIQSTLLDLTCHSIAQDILKLA----QEGELFVCGGGAFNAELMQRLAALLPG 315 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----SSEEEEEESGGGGCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCCcCCHHHHHHHHHhCCC
Confidence 3344444445555566665442 356899999999999999999999853
No 74
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=77.74 E-value=14 Score=32.15 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCCh
Q psy4399 190 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 234 (379)
Q Consensus 190 r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~ 234 (379)
++..+.+-...+......|+..+++..... .--.|+++||.+.+
T Consensus 180 ~nT~~ai~sGi~~g~~g~i~~~i~~~~~~~-~~~~vi~TGG~a~~ 223 (249)
T 3bex_A 180 KDTEENIRLGVVNGSVYALEGIIGRIKEVY-GDLPVVLTGGQSKI 223 (249)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEEESTTSGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECCChHH
Confidence 444555555555555555554444321111 12469999999865
No 75
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=77.42 E-value=0.22 Score=42.99 Aligned_cols=32 Identities=41% Similarity=0.370 Sum_probs=18.3
Q ss_pred ceeEeecccccccccCCCCcccccccccccccccccc
Q psy4399 314 LLLLDVTPQLAWRSFKNDSYGVDIDTIMNNLAIKIPL 350 (379)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~ 350 (379)
++++||+|+..+.... .|+....|++|+ ++|+
T Consensus 1 ~~l~DV~p~slGie~~---gg~~~~lI~rnt--~iP~ 32 (219)
T 4e81_A 1 VLLLDVTPLSLGIETM---GGVMTTLIAKNT--TIPT 32 (219)
T ss_dssp CCCCCBCSSCEEEEET---TTEEEEEECTTC--BSSE
T ss_pred CeEEEecCcEEEEEEe---CCEEEEEEeCcC--cccE
Confidence 4689999994333221 133445666776 4554
No 76
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=76.91 E-value=6.4 Score=35.15 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=39.2
Q ss_pred cCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 222 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 222 i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
++.|+|.||.+..+.+.+.+++.+..... ...++......+.|.++||+..+.
T Consensus 238 p~~IvlgGgi~~~~~~~~~l~~~l~~~~~---------------------------~~~~i~~s~lg~~a~~~GAa~l~~ 290 (297)
T 4htl_A 238 PTHIFIGGGITSRPTFIAELKHHMESFGL---------------------------RDTIIETATHKNQAGLLGAVYHFL 290 (297)
T ss_dssp CSEEEEESGGGGSTTHHHHHHHHHTTTCC---------------------------TTCEEEECSCTTTHHHHHHHHHHH
T ss_pred CCEEEEeCcccccHHHHHHHHHHHHHhcc---------------------------CCCeEEECCcCChHHHHhHHHHHH
Confidence 57899999999888888888888863110 002455566778899999998775
Q ss_pred H
Q psy4399 302 I 302 (379)
Q Consensus 302 ~ 302 (379)
.
T Consensus 291 ~ 291 (297)
T 4htl_A 291 Q 291 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 77
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=76.61 E-value=1.9 Score=39.38 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=16.5
Q ss_pred eEEEEEcCCceeEEEEEE
Q psy4399 78 NVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 78 ~vlVvD~GggT~disv~~ 95 (379)
..+++|+||.|||+..+.
T Consensus 128 ~~llvDIGsTTTDIipi~ 145 (334)
T 3cet_A 128 NCILVDMGSTTTDIIPIV 145 (334)
T ss_dssp SEEEEEECSSCEEEEEEE
T ss_pred CEEEEEcCcchhhhhhhc
Confidence 469999999999999988
No 78
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=74.38 E-value=39 Score=31.65 Aligned_cols=44 Identities=9% Similarity=0.274 Sum_probs=31.3
Q ss_pred HHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcC
Q psy4399 199 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFN 246 (379)
Q Consensus 199 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~ 246 (379)
-++.++.+.|-..... + ..+|.|+++||-+ ..+.+|+.+.+.++
T Consensus 312 ~f~yri~k~IGa~aa~--L--ggvDaIVFTgGIGEns~~vR~~i~~~l~ 356 (415)
T 2e1z_A 312 TFVHRIARHIAGHAAS--L--HRLDGIIFTGGIGENSVLIRQLVIEHLG 356 (415)
T ss_dssp HHHHHHHHHHHHHHTT--C--SSCCEEEEEHHHHHHCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHH--h--CCCCEEEECccccccCHHHHHHHHhhHh
Confidence 3344444444444332 2 4589999999999 99999999998775
No 79
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=74.29 E-value=5.5 Score=38.17 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=29.2
Q ss_pred ceeeeccchHHHHHHhcccc-ccCCC--------C-CCCCceEEEEEcCCceeEEEEEE
Q psy4399 47 NVLRIINEPTAAAIAYGLDK-KVGSA--------A-GSGERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 47 ~~~~lv~Ep~Aaa~~~~~~~-~~~~~--------~-~~~~~~vlVvD~GggT~disv~~ 95 (379)
..+++|+-.+=|.++|..-. ....- . ......++|+|+|||+|.++...
T Consensus 150 ~~v~VIsG~eEa~y~wl~vn~~lg~~~~~~~~~~~~~~~~~t~gvlDlGGgStqi~~~~ 208 (456)
T 3cj1_A 150 RGARILSGQDEGVFGWVTANYLLENFIKYGWVGRWIRPRKGTLGAMDLGGASTQITFET 208 (456)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHTTTTSCCEETTEECSSCCCCCEEEEECSSEEEEEEEC
T ss_pred CceEEcCchHHhhhhHHHHHhhhcccccccccccccccCCCceEEEEcCCCceEEEecc
Confidence 46788886666665552111 00000 0 00135689999999999999874
No 80
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=72.99 E-value=49 Score=29.08 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEcCCCCCHH-HHHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEE
Q psy4399 3 LTKMKETAEAYLGKTVSNAVITVPAYFNDS-QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81 (379)
Q Consensus 3 L~~l~~~a~~~~~~~~~~~vitvPa~~~~~-~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlV 81 (379)
++.+.+..+..+...+..+.|++|.. +.. ....+.+..+..|+ .+.+.++..|++++-.. ..++++
T Consensus 45 ~~~i~~~i~~~~~~~~~~igi~~~G~-~~~~~~~~l~~~l~~~~~-pv~v~ND~~aaa~~e~~-----------~~~~v~ 111 (299)
T 2e2o_A 45 IENIKEAVKIAAKGEADVVGMGVAGL-DSKFDWENFTPLASLIAP-KVIIQHDGVIALFAETL-----------GEPGVV 111 (299)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEEETTC-CSHHHHHHHHHHHTTSSS-EEEEEEHHHHHHHHHHT-----------TSCEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCC-CchhHHHHHHHHHHhCCC-CEEEeCcHHHHHhhccC-----------CCCeEE
Confidence 45556666655544467899999998 533 33445554444343 56888999999887432 234677
Q ss_pred EEcCCce
Q psy4399 82 FDLGGGT 88 (379)
Q Consensus 82 vD~GggT 88 (379)
+-+|-|.
T Consensus 112 l~~GTG~ 118 (299)
T 2e2o_A 112 VIAGTGS 118 (299)
T ss_dssp EEESSSE
T ss_pred EEecCCE
Confidence 7788883
No 81
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=72.57 E-value=6.5 Score=35.41 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=29.3
Q ss_pred cCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEE
Q psy4399 44 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 44 AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~ 95 (379)
.|++ +.+.++..|++++........ ....++++-+|.| .-..++.
T Consensus 108 ~~~p-v~v~ND~~aaa~~e~~~g~~~-----~~~~~~~l~~GtG-iG~giv~ 152 (326)
T 2qm1_A 108 LGIP-FALDNDANVAALGERWKGAGE-----NNPDVIFITLGTG-VGGGIVA 152 (326)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTT-----TCSCEEEEEESSS-EEEEEEE
T ss_pred hCCC-EEEecHHHHHHHHHHHhCCCC-----CCCcEEEEEECCc-eEEEEEE
Confidence 3665 689999999998753322111 2456788888988 4455553
No 82
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=72.19 E-value=6.7 Score=34.74 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=40.5
Q ss_pred CCCCcEEEEcCCCCCHHH-------------HHHHHHHHHHcCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEE
Q psy4399 16 KTVSNAVITVPAYFNDSQ-------------RQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIF 82 (379)
Q Consensus 16 ~~~~~~vitvPa~~~~~~-------------r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVv 82 (379)
.++..+.|++|...+... ...+++..+..|++ +.+.++..|+|++... .. . ...+++++
T Consensus 53 ~~i~gigi~~pG~vd~~~g~v~~~~~~~~~~~~~l~~~l~~~~~p-v~v~NDa~aaa~~e~~-~~-~-----~~~~~v~l 124 (292)
T 2gup_A 53 QDYSGIAMSVPGAVNQETGVIDGFSAVPYIHGFSWYEALSSYQLP-VHLENDANCVGLSELL-AH-P-----ELENAACV 124 (292)
T ss_dssp SCCSEEEEEESSEECTTTCBEESCCSSGGGSSSBHHHHTGGGCCC-EEEEEHHHHHHHHHHH-HC-T-----TCSSEEEE
T ss_pred CCCcEEEEEecCcccCCCCEEEecCCCCcccCCCHHHHHHHcCCC-EEEechHHHHHHHHHH-hc-C-----CCCeEEEE
Confidence 456677888876432110 01233322334665 6899999999988644 11 1 24567888
Q ss_pred EcCCceeEEEEE
Q psy4399 83 DLGGGTFDVSIL 94 (379)
Q Consensus 83 D~GggT~disv~ 94 (379)
-+|.| .-..++
T Consensus 125 ~~GtG-iG~giv 135 (292)
T 2gup_A 125 VIGTG-IGGAMI 135 (292)
T ss_dssp EESSS-EEEEEE
T ss_pred EECCc-eEEEEE
Confidence 88887 334444
No 83
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=71.32 E-value=6.1 Score=37.72 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=28.6
Q ss_pred ceeeeccchHHHHHHhccccccCCCCC-CCCceEEEEEcCCceeEEEEEE
Q psy4399 47 NVLRIINEPTAAAIAYGLDKKVGSAAG-SGERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 47 ~~~~lv~Ep~Aaa~~~~~~~~~~~~~~-~~~~~vlVvD~GggT~disv~~ 95 (379)
..+++++-.+=+.++|..-+..-.... .....+.++|+|||+|.++...
T Consensus 150 ~~v~iisG~eEg~y~wi~vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~ 199 (452)
T 3zx3_A 150 QGAKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALDLGGASTQITFVP 199 (452)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHTTTTC---CCCCEEEEECSSEEEEEECC
T ss_pred CceEECCchhhhhhhHHHHHhhhccccCCCCCceEEEecCCCceEEEecc
Confidence 457888866665555533211100000 0235678999999999998664
No 84
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=67.74 E-value=8.4 Score=34.00 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=36.5
Q ss_pred cCEEEEEcCCCChHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHHH
Q psy4399 222 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301 (379)
Q Consensus 222 i~~VvLvGG~sr~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a~ 301 (379)
++.|+|.||.+..+.+.+.+++.+...... + ..++......+.+.++|||..+.
T Consensus 234 p~~ivlgG~~~~~~~~~~~l~~~l~~~~~~-----------~---------------~~~i~~~~~~~~a~~~GAa~l~~ 287 (289)
T 2aa4_A 234 CQCVVVGGSVGLAEGYLALVETYLAQEPAA-----------F---------------HVDLLAAHYRHDAGLLGAALLAQ 287 (289)
T ss_dssp CSEEEEEHHHHTSTTHHHHHHHHHTTSCGG-----------G---------------CCEEEECSCSSCHHHHHHHHHHH
T ss_pred CCEEEEeCcccccHHHHHHHHHHHHHhcCc-----------c---------------CCEEEECCCCCchHHHHHHHHHh
Confidence 467999999877788889998888642100 0 02344445567789999998753
No 85
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=66.51 E-value=23 Score=34.04 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=33.3
Q ss_pred CCceEEEEEcCCceeEEEEEEEeCC-eEEE----EEecCCCCCC-HHHHHHHHHHHHHH
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIEDG-IFEV----KSTAGDTHLG-GEDFDNRMVNHFVQ 127 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~~~-~~~~----~~~~~~~~lG-G~~id~~l~~~l~~ 127 (379)
+...++.+|+||.++-+.++++.+. .+++ .....+...| |..+=..|++.+.+
T Consensus 78 E~G~~LalDlGGTn~Rv~~V~l~g~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~i~~ 136 (485)
T 3o8m_A 78 ETGDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKE 136 (485)
T ss_dssp CEEEEEEEEESSSEEEEEEEEEESSSCEEEEEEEEECCTTGGGSBHHHHHHHHHHHHHH
T ss_pred cceEEEEEEecCCeEEEEEEEECCCCceEEEEEEEecCchhccCCHHHHHHHHHHHHHH
Confidence 4467999999999999999999765 2332 2333333334 55554455544443
No 86
>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp}
Probab=64.43 E-value=31 Score=31.94 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=30.5
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcC
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFN 246 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~ 246 (379)
+-++.++.+.|-..... +. .+|.|+++||-+ ..+.+|+.+.+.++
T Consensus 294 d~f~yri~k~IGa~aa~--L~--gvDaIVFTgGIgEns~~iR~~i~~~l~ 339 (384)
T 3khy_A 294 EIFSHRVAKFVASYMIY--FN--KLDALVFTGGIGENAANIRKNIISKLA 339 (384)
T ss_dssp HHHHHHHHHHHHHHGGG--CS--SCCEEEEEHHHHHHCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHH--hC--CCCEEEECCccccCcHHHHHHHHhhcc
Confidence 33444444444444332 22 589999999988 67889999998874
No 87
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=59.71 E-value=22 Score=32.98 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=35.6
Q ss_pred CcCEEEEEcCCCChHH-HHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHH
Q psy4399 221 QIHDIVLVGGSTRIPK-VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~-v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~ 299 (379)
+++.|+|.||.+..+. +.+.+++.+.... | ..+........+.+.||+..
T Consensus 295 ~p~~IvlgGgi~~~~~~l~~~i~~~l~~~~------------------~-----------~~i~~~~~~~~a~~~GAa~l 345 (381)
T 1saz_A 295 EVDFIVLTGGLAHEKEFLVPWITKRVSFIA------------------P-----------VLVFPGSNEEKALALSALRV 345 (381)
T ss_dssp CCSEEEEEEGGGGCTTTHHHHHHHHHTTTS------------------C-----------EEEEEBCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCccChHHHHHHHHHHHHhhc------------------C-----------eEEEecCcchhHHHHHHHHH
Confidence 4689999999887544 8888888886410 0 12333445567999999976
Q ss_pred HH
Q psy4399 300 AA 301 (379)
Q Consensus 300 a~ 301 (379)
+.
T Consensus 346 ~~ 347 (381)
T 1saz_A 346 LR 347 (381)
T ss_dssp HT
T ss_pred Hc
Confidence 53
No 88
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=58.46 E-value=54 Score=31.20 Aligned_cols=53 Identities=11% Similarity=0.165 Sum_probs=33.4
Q ss_pred CCceEEEEEcCCceeEEEEEEEeCCe---EEEEEecCCCCC---CHHHHHHHHHHHHHH
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIEDGI---FEVKSTAGDTHL---GGEDFDNRMVNHFVQ 127 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~~~~---~~~~~~~~~~~l---GG~~id~~l~~~l~~ 127 (379)
+...++.+|+||.++-+.++...+.. .......-...+ ++..+-..|++.+.+
T Consensus 59 E~G~~laiDlGGTnirv~lV~~~G~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~ 117 (457)
T 2yhx_A 59 QAGSFLAIVMGGGDLEVILISLAGRQESSIXASRSLAAAMSTTAIPSDLWGNXAXSNAA 117 (457)
T ss_dssp CCEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCTTTTSCSCTHHHHHHHHHHHHH
T ss_pred ccceEEEEEeCCCeEEEEEEEeCCCeeEEEeeEEEEcCCccCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999987665 222222222232 556555555555443
No 89
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=58.21 E-value=22 Score=32.82 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=34.6
Q ss_pred cCEEEEEcCCCCh-HHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 222 IHDIVLVGGSTRI-PKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 222 i~~VvLvGG~sr~-p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
++.|+|.||.+.. +.+.+.+++.+....... ...++......+.+.+.|||..+
T Consensus 315 P~~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~-------------------------~~~~i~~s~~~~~a~~~GAa~l~ 369 (380)
T 2hoe_A 315 ISKIVIGGFFKELGENFLKKIKIEVETHLLYK-------------------------HSVDMSFSKVQEPVIAFGAAVHA 369 (380)
T ss_dssp CCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSS-------------------------CCCEEEECCCCSCHHHHHHHHHH
T ss_pred CCEEEEcCchhhhhHHHHHHHHHHHHHhcCCC-------------------------CCcEEEEcCCCCcHHHHHHHHHH
Confidence 4689999998864 778788877764311000 00233334455678999999876
Q ss_pred H
Q psy4399 301 A 301 (379)
Q Consensus 301 ~ 301 (379)
.
T Consensus 370 ~ 370 (380)
T 2hoe_A 370 L 370 (380)
T ss_dssp H
T ss_pred H
Confidence 4
No 90
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=55.47 E-value=1.3 Score=35.70 Aligned_cols=30 Identities=30% Similarity=0.207 Sum_probs=15.5
Q ss_pred eEeecccccccccCCCCcccccccccccccccccc
Q psy4399 316 LLDVTPQLAWRSFKNDSYGVDIDTIMNNLAIKIPL 350 (379)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~ 350 (379)
+.||+|+..+.... .|+....|++|+ ++|+
T Consensus 2 ~~Dv~p~slGie~~---gg~~~~lI~rnt--~iP~ 31 (152)
T 3dob_A 2 NADVAPLSLGIETA---GGVMTNLIDRNT--RIPT 31 (152)
T ss_dssp --CBCSSCEEEEET---TTEEEEEECTTC--BSSE
T ss_pred ceeeecceEEEEEc---CCEEEEEEECcC--ccCE
Confidence 57999994333221 133445666776 4554
No 91
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=54.19 E-value=1.4 Score=35.48 Aligned_cols=30 Identities=27% Similarity=0.091 Sum_probs=16.4
Q ss_pred eEeecccccccccCCCCcccccccccccccccccc
Q psy4399 316 LLDVTPQLAWRSFKNDSYGVDIDTIMNNLAIKIPL 350 (379)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~ 350 (379)
++||+|+..+.... .|+....|++|+ ++|+
T Consensus 2 ~~Dv~p~slGi~~~---gg~~~~lI~rnt--~iP~ 31 (152)
T 3h0x_A 2 NADVNALTLGIETT---GGVMTPLIKRNT--AIPT 31 (152)
T ss_dssp -CCBCSSCEEEEET---TTEEEEEECTTC--BSSE
T ss_pred ccceeccEEEEEEc---CCEEEEEEECcC--ccCE
Confidence 56999994333222 233445667776 4554
No 92
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=52.94 E-value=1.7 Score=34.86 Aligned_cols=30 Identities=30% Similarity=0.185 Sum_probs=15.6
Q ss_pred eEeecccccccccCCCCcccccccccccccccccc
Q psy4399 316 LLDVTPQLAWRSFKNDSYGVDIDTIMNNLAIKIPL 350 (379)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~ 350 (379)
+.||+|+..+.... .|+....|++|+ ++|+
T Consensus 2 ~~DV~p~slGie~~---gg~~~~lI~rnt--~iP~ 31 (151)
T 3dqg_A 2 NADVTPLSLGIETL---GGIMTKLITRNT--TIPT 31 (151)
T ss_dssp --CBCSSCEEEEET---TTEEEEEECTTC--BSSE
T ss_pred cceeeeeEEEEEEc---CCEEEEEEECcC--ccCE
Confidence 56999994333222 133445667776 4554
No 93
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=50.79 E-value=21 Score=35.55 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=45.6
Q ss_pred cccccHHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHH
Q psy4399 185 RLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 242 (379)
Q Consensus 185 ~~~ltr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~ 242 (379)
.+.+|..+++++. -.-..+..-++-.++.+++...+|+.|+|.||++.---+.+.+.
T Consensus 499 ~i~itq~DIr~~q-lAKaAi~agi~~Ll~~~gi~~~di~~v~lAGaFG~~l~~~~a~~ 555 (631)
T 3zyy_X 499 DIVITEADIQNLI-RAKAAIFAGVRTMLAMVDLPLEAIDRVIIAGGFGKYLNIKDAIT 555 (631)
T ss_dssp CEEEEHHHHHHHH-HHHHHHHHHHHHHHHHTTCCGGGCCEEEEESSSCSEEEHHHHHH
T ss_pred cEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeccccccCCHHHHhh
Confidence 4667799999864 33455677778888999999999999999999998766766665
No 94
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=50.73 E-value=16 Score=34.08 Aligned_cols=58 Identities=10% Similarity=0.131 Sum_probs=34.9
Q ss_pred cCEEEEEcCCCC-hHHHHHHHHHHcCCcccccccCCCccccccccccchhhhhhhcccCccccCCCChhhHHHhhHHHHH
Q psy4399 222 IHDIVLVGGSTR-IPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300 (379)
Q Consensus 222 i~~VvLvGG~sr-~p~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aVA~Gaa~~a 300 (379)
++.|+|.||.+. .+.+.+.+++.+...... .+ ....++......+.+.++|||+..
T Consensus 335 P~~IvlgG~i~~~~~~l~~~i~~~l~~~~~~----------~~-------------~~~~~i~~s~l~~~a~~~GAa~~~ 391 (406)
T 1z6r_A 335 PQKILIGSPLSKAADILFPVISDSIRQQALP----------AY-------------SQHISVESTQFSNQGTMAGAALVK 391 (406)
T ss_dssp CSEEEEESGGGGGHHHHHHHHHHHHHHHSCH----------HH-------------HTTCEEEECSCCCCTTTTHHHHHH
T ss_pred CCEEEEeCccchhhHHHHHHHHHHHHHhccc----------cc-------------CCCcEEEEeCCCChHHHHHHHHHH
Confidence 468999999876 477777777766431000 00 000234444456778999998765
Q ss_pred HH
Q psy4399 301 AI 302 (379)
Q Consensus 301 ~~ 302 (379)
..
T Consensus 392 ~~ 393 (406)
T 1z6r_A 392 DA 393 (406)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 95
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=49.31 E-value=52 Score=29.31 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=23.7
Q ss_pred cCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCc
Q psy4399 44 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGG 87 (379)
Q Consensus 44 AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~Ggg 87 (379)
.|++ +.+.++..|+|++....... ....++.+-+|.|
T Consensus 107 ~~~p-v~v~NDanaaa~~e~~~~~~------~~~~~~~v~~GtG 143 (310)
T 3htv_A 107 LNCP-VEFSRDVNLQLSWDVVENRL------TQQLVLAAYLGTG 143 (310)
T ss_dssp HTSC-EEEEEHHHHHHHHHHHHTTC------TTSCEEEEEESSS
T ss_pred hCCC-EEEeeHHHHHHHHHHhhccc------CCceEEEEEecee
Confidence 4775 68999999998754332211 2356677777765
No 96
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=47.78 E-value=8.5 Score=34.40 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=34.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHc--CCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCcee
Q psy4399 19 SNAVITVPAYFNDSQRQATKDSGTIA--GLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTF 89 (379)
Q Consensus 19 ~~~vitvPa~~~~~~r~~l~~a~~~A--Gl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~ 89 (379)
..+.|++|..-+......+.. .. ++ .+.+.++..||+++-. . ....+++=+|-|..
T Consensus 77 ~~igig~pG~v~~~~~~~l~~---~~~~~~-pv~v~NDa~aaa~ge~---~--------~~~~v~v~~GTGig 134 (305)
T 1zc6_A 77 CAIGLGLSGVHNRQWAGEFES---QAPGFA-RLSLATDGYTTLLGAH---G--------GQPGIIVALGTGSI 134 (305)
T ss_dssp EEEEEEESCCCTTSHHHHHHH---TCCCCS-EEEEECHHHHHHHHHT---T--------TSSEEEEEESSSEE
T ss_pred ceEEEEecCCCchHHHHHHHH---hCCCCc-eEEEECCHHHHHHhhc---C--------CCCeEEEEecCCeE
Confidence 458999998776544333322 11 23 5788999999887641 1 12345666787764
No 97
>3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A
Probab=47.51 E-value=92 Score=29.18 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=32.1
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~ 246 (379)
.++-++.++.+.|-......+ ..+|.|+++||-+ ..+.||+.+.+.+.
T Consensus 317 A~d~f~yri~k~IGa~aa~L~---G~vDaIVFTgGIGEns~~vR~~v~~~l~ 365 (415)
T 3sk3_A 317 AMDVYCHRLAKYIGSYTALMD---GRLDAVVFTGGIGENAAMVRELSLGKLG 365 (415)
T ss_dssp HHHHHHHHHHHHHHHGGGGST---TCCCEEEEEHHHHTTCHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCCEEEECCccccCCHHHHHHHHhhch
Confidence 444444555555444433221 2489999999987 68999999998774
No 98
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=46.65 E-value=6.8 Score=39.05 Aligned_cols=25 Identities=40% Similarity=0.755 Sum_probs=22.8
Q ss_pred cCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 222 IHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 222 i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
.+.|++|||+|.+|++.-.|++.+.
T Consensus 501 y~nilivGggski~g~~~~L~dri~ 525 (655)
T 4am6_A 501 YSNILIVGGSSKIPALDFILTDRIN 525 (655)
T ss_dssp HTCEEEESTTCCCTTHHHHHHHHHH
T ss_pred hhcEEEEcCcccCccHHHHHHHHHH
Confidence 5779999999999999999998875
No 99
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=46.62 E-value=36 Score=30.24 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=28.1
Q ss_pred cCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEE
Q psy4399 44 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSIL 94 (379)
Q Consensus 44 AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~ 94 (379)
.|++ +.+.++..|+|++-....... ...+++++-+|-| .-..++
T Consensus 97 ~~~p-V~v~NDanaaalaE~~~G~~~-----~~~~~~~l~~GtG-iG~gii 140 (302)
T 3epq_A 97 MXIP-VGFSTDVNAAALGEFLFGEAX-----GLDSCLYITIGTG-IGAGAI 140 (302)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTT-----TCSCEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEechhHHHHHHHHHhCCCC-----CCCcEEEEEECCc-eEEEEE
Confidence 3776 689999999999854432211 2456777888766 333444
No 100
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=45.04 E-value=16 Score=26.04 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCce
Q psy4399 5 KMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNV 48 (379)
Q Consensus 5 ~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~ 48 (379)
.++...+.+... .+-.++.|+.++..+|..+.+.|+.-||..
T Consensus 20 ~i~~~l~~F~~~--~~~~l~FP~sLs~~eR~~IH~lA~~~GL~h 61 (86)
T 1msz_A 20 HFRAMIVEFMAS--KKMQLEFPPSLNSHDRLRVHQIAEEHGLRH 61 (86)
T ss_dssp HHHHHHHHHHHH--TCSEEEECTTCCSHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHhcC--CCcEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 345555555422 235789999999999999999999999854
No 101
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=43.53 E-value=6.7 Score=34.87 Aligned_cols=46 Identities=7% Similarity=0.005 Sum_probs=31.0
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHHHH-cCC-ceeeeccchHHHHHHh
Q psy4399 16 KTVSNAVITVPAYFNDSQRQATKDSGTI-AGL-NVLRIINEPTAAAIAY 62 (379)
Q Consensus 16 ~~~~~~vitvPa~~~~~~r~~l~~a~~~-AGl-~~~~lv~Ep~Aaa~~~ 62 (379)
.++..+.|++|..- ......+++..+. .++ ..+.+.++..||+++-
T Consensus 58 ~~i~~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge 105 (291)
T 1zbs_A 58 SSIRAVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARAL 105 (291)
T ss_dssp TTCCEEEEEETTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHH
T ss_pred ccccEEEEECCCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhh
Confidence 34677999999864 2222345555443 354 3689999999999874
No 102
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Probab=40.83 E-value=29 Score=30.89 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=39.4
Q ss_pred HHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcCC
Q psy4399 195 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 247 (379)
Q Consensus 195 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~~ 247 (379)
++++...+.+...+++.|+++++.+++|+.|+.-|++.++ -+.+.+.|+-
T Consensus 211 ~~~~~~~~~~~~~i~~aL~~agl~~~did~v~~H~~~~~~---~d~i~~~lg~ 260 (317)
T 1hnj_A 211 EVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRI---ISATAKKLGM 260 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEECCSCHHH---HHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHcCC
Confidence 3444555677888999999999999999999999887764 4578888863
No 103
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=40.35 E-value=99 Score=29.02 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=49.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHH-HHHHhccccccCCCCC--CCC--------------ceEE
Q psy4399 18 VSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTA-AAIAYGLDKKVGSAAG--SGE--------------RNVL 80 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~A-aa~~~~~~~~~~~~~~--~~~--------------~~vl 80 (379)
+.++|++.|+.-+ -.+.-||..+|++.+.-+-=..| ||++|++.. .++-.. .++ ...+
T Consensus 154 V~~Iv~~tPp~i~----p~iL~AA~l~Gv~eIy~vGGAQAIAAlAyGTet-Ip~VDkI~GPGN~yVa~AKr~Vs~~~G~V 228 (434)
T 1kae_A 154 CKKVVLCSPPPIA----DEILYAAQLCGVQDVFNVGGAQAIAALAFGTES-VPKVDKIFGPGNAFVTEAKRQVSQRLDGA 228 (434)
T ss_dssp CSEEEEEECSSCC----HHHHHHHHHTTCCEEEECCHHHHHHHHHHCCSS-SCCCSEEECCCCHHHHHHHHHHHHCTTSC
T ss_pred CCeEEEECCCCCC----HHHHHHHHHcCCCEEeecccHHHHHHHHcCCCC-CCCccEEECCCcHHHHHHHHHhHhhcCcc
Confidence 4589999998333 36788999999999999988777 678898753 221100 000 1113
Q ss_pred EEEcCCceeEEEEEE
Q psy4399 81 IFDLGGGTFDVSILT 95 (379)
Q Consensus 81 VvD~GggT~disv~~ 95 (379)
=+|+=+|-+.+-|+-
T Consensus 229 gIDm~AGPSEilViA 243 (434)
T 1kae_A 229 AIDMPAGPSEVLVIA 243 (434)
T ss_dssp EESCCCCCCEEEEEE
T ss_pred ccCCCCCCceEEEEe
Confidence 488888888887776
No 104
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=40.14 E-value=1.3e+02 Score=28.51 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCceeEEEEEEEeC
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIED 98 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~~ 98 (379)
+...++.+|+||.++-+.++++.+
T Consensus 66 E~G~~lalDlGGTn~Rv~~V~l~G 89 (451)
T 1bdg_A 66 ETGNFLALDLGGTNYRVLSVTLEG 89 (451)
T ss_dssp CCEEEEEEEESSSSEEEEEEEECC
T ss_pred ccceEEEEEeCCCeEEEEEEecCC
Confidence 356789999999999999999966
No 105
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=37.57 E-value=47 Score=30.42 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=14.4
Q ss_pred CCceeeeccchHHHHHH
Q psy4399 45 GLNVLRIINEPTAAAIA 61 (379)
Q Consensus 45 Gl~~~~lv~Ep~Aaa~~ 61 (379)
++..+.+.++..|+|++
T Consensus 128 ~~~pv~v~NDa~aaalg 144 (373)
T 2q2r_A 128 PPGHSAILNDLEAGGFG 144 (373)
T ss_dssp CTTSEEEEEHHHHHHHH
T ss_pred CCCCEEEEccHhHHhcc
Confidence 55467999999999998
No 106
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=37.30 E-value=1.2e+02 Score=28.59 Aligned_cols=29 Identities=28% Similarity=0.626 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCceeEEEEEEEeCCeEEEE
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIEDGIFEVK 104 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~~~~~~~~ 104 (379)
+...++.+|+||.++-+.++++.++ ++..
T Consensus 57 E~G~~LAlDlGGTn~RV~~V~l~g~-~~~~ 85 (445)
T 3hm8_A 57 ERGDFLALDLGGTNFRVLLVRVTTG-VQIT 85 (445)
T ss_dssp CCEEEEEEEESSSSEEEEEEEESSS-EEEE
T ss_pred eeeEEEEEEecCCeEEEEEEEECCc-eEEE
Confidence 4567999999999999999999766 4433
No 107
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=35.65 E-value=37 Score=31.85 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=18.6
Q ss_pred cCEEEEEcCCCC-hHHHHHHHHHHcC
Q psy4399 222 IHDIVLVGGSTR-IPKVQKLLQDFFN 246 (379)
Q Consensus 222 i~~VvLvGG~sr-~p~v~~~l~~~f~ 246 (379)
++.|+|.||.+. .+.+.+.+++.+.
T Consensus 358 P~~IvlgG~i~~~~~~l~~~l~~~l~ 383 (429)
T 1z05_A 358 PEKILIGGVINQAKSILYPSIEQCIR 383 (429)
T ss_dssp CSEEEEESGGGGGHHHHHHHHHHHHH
T ss_pred CCEEEEeCccccchHHHHHHHHHHHH
Confidence 468999999876 4677777777664
No 108
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=34.94 E-value=1e+02 Score=30.68 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=29.0
Q ss_pred HhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHH
Q psy4399 200 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 237 (379)
Q Consensus 200 ~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v 237 (379)
+++.+.+.+.+.+++++..+.+|..++++|-.+..-.+
T Consensus 268 v~~~in~li~~l~~~~~i~~~~I~~~~v~GNt~M~hLl 305 (631)
T 3zyy_X 268 VLSTINELIFQLCKEHGVEKKEIMAAVVAGNTTMTHLF 305 (631)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHeeEEEEEccHHHHHHH
Confidence 34556667777888889999999999999987655544
No 109
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2
Probab=34.59 E-value=39 Score=30.08 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=37.2
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
++-....+...+++.|+++++.+++|+.|+.-|++.++ -+.+.+.|+
T Consensus 215 ~~~~~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~---~d~~~~~lg 261 (322)
T 1ub7_A 215 FKFAVRVMNTATLEAIEKAGLTPEDIRLFVPHQANLRI---IDAARERLG 261 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCSEEEECCSCHHH---HHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHcC
Confidence 34445677788999999999999999999999887654 456777776
No 110
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}
Probab=34.08 E-value=43 Score=29.54 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=36.3
Q ss_pred HHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 199 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 199 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
...+.+...+++.|+++++.+++|+.|++-|+++++ -+.+.+.|+
T Consensus 207 ~~~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~---~~~~~~~lg 251 (309)
T 2ebd_A 207 VAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRI---INALAEKLN 251 (309)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCSEEEECCSCHHH---HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHhC
Confidence 345567788999999999999999999999987764 356777776
No 111
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=33.30 E-value=1.2e+02 Score=27.14 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=28.6
Q ss_pred cCCceeeeccchHHHHHHhccccccCCCCCCCCceEEEEEcCCceeEEEEEE
Q psy4399 44 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILT 95 (379)
Q Consensus 44 AGl~~~~lv~Ep~Aaa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~disv~~ 95 (379)
.|++ +.+.++..|+|++........ ...+++++-+|.| .-..++.
T Consensus 131 ~~~p-v~v~NDa~aaal~E~~~g~~~-----~~~~~v~i~~GtG-iG~gii~ 175 (343)
T 2yhw_A 131 LHLP-VWVDNDGNCAALAERKFGQGK-----GLENFVTLITGTG-IGGGIIH 175 (343)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHTSTTT-----TCSCEEEEEESSS-EEEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhCCCC-----CCCcEEEEEECCC-EEEEEEE
Confidence 3775 688999999998854322111 2356788888887 4444443
No 112
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=32.58 E-value=1.3e+02 Score=26.68 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=33.4
Q ss_pred CceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy4399 76 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 127 (379)
Q Consensus 76 ~~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l~~ 127 (379)
+..++.+|+||..+.+.++...+..+......... .+...+-+.+.+.+.+
T Consensus 23 ~~~~lgiDiGgt~i~~~l~d~~g~il~~~~~~~~~-~~~~~~~~~i~~~i~~ 73 (327)
T 2ap1_A 23 NAMYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPH-TSYSAFLDAVCELVEE 73 (327)
T ss_dssp CCEEEEEEECSSEEEEEEEETTCCEEEEEEEECCC-SCHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCEEEEEEEeCCCCEEEEEEecCCC-CCHHHHHHHHHHHHHH
Confidence 45689999999999999998765544433333322 2556666666655543
No 113
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=30.60 E-value=52 Score=30.72 Aligned_cols=47 Identities=9% Similarity=0.071 Sum_probs=34.8
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~ 246 (379)
.++-++.++.+.|-......+ .+|.|+++||-+ +.+.+|+.+.+.++
T Consensus 301 A~d~f~yri~k~IGa~~a~Lg----gvDaIVFTgGIGEns~~vR~~i~~~l~ 348 (403)
T 2iir_A 301 VLEIYDYRIAKYIGAYAAAMN----GVDAIVFTAGVGENSPITREDVCSYLE 348 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----CCSEEEEEHHHHTTCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CCCEEEECcccccCCHHHHHHHHhhhh
Confidence 334455566666655555443 489999999999 99999999999875
No 114
>4h0p_A Acetate kinase; askha (acetate and sugar kinas actin) superfamily, ribonuclease H-like fold, transferase; 1.89A {Cryptococcus neoformans}
Probab=30.28 E-value=44 Score=31.47 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=35.3
Q ss_pred HHHHHhhchhhHHHHHHHHhc--CCcCCcCEEEEEcCCC-ChHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAK--MDKAQIHDIVLVGGST-RIPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~--~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~ 246 (379)
.++-++.++.+.|-......+ ..+..+|.|+++||-+ +.+.+|+.+.+.++
T Consensus 325 A~d~f~yri~k~IGa~aa~L~~~~~~G~vDaIVFTGGIGEns~~iR~~i~~~l~ 378 (438)
T 4h0p_A 325 TYAVFLDRLLNFVAQYLFKLLSEVPIESIDGLVFSGGIGEKGAELRRDVLKKLA 378 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGSCEEEEEHHHHHHCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCCCCCEEEECCccccCcHHHHHHHHHhHh
Confidence 444555666666655544432 2223589999999986 89999999998875
No 115
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=30.28 E-value=54 Score=31.36 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCceeEEEEEEEeCC
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIEDG 99 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~~~ 99 (379)
+...++.+|+||.++-+..+++.++
T Consensus 75 E~G~fLAlDlGGTNfRV~~V~L~g~ 99 (470)
T 3f9m_A 75 EVGDFLSLDLGGTNFRVMLVKVGEG 99 (470)
T ss_dssp CCEEEEEEEESSSEEEEEEEEEEC-
T ss_pred cceEEEEEEecCceEEEEEEEECCC
Confidence 4567999999999999999999754
No 116
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2
Probab=30.08 E-value=51 Score=29.64 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
++...+.+...+++.|+++++.+++|+.|+.-|++.++ -+.+.+.|+
T Consensus 226 ~~~~~~~~~~~i~~aL~~agl~~~did~v~~H~~~~~~---~d~i~~~lg 272 (339)
T 1mzj_A 226 FRWAVADVVPAAREALEVAGLTVGDLVAFVPHQANLRI---IDVLVDRLG 272 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCGGGCSEEEECCSCHHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH---HHHHHHHhC
Confidence 33445667788999999999999999999998887753 456777776
No 117
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A
Probab=29.04 E-value=60 Score=28.63 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=36.7
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
++.....+...+++.|+++++.+++|+.|++-+++.++ -+.+.+.|+
T Consensus 207 ~~~~~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~---~d~~~~~lg 253 (313)
T 1zow_A 207 FKFAVRIMGDASTRVVEKANLTSDDIDLFIPHQANIRI---MESARERLG 253 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHhC
Confidence 33445667788999999999999999999999887653 355677776
No 118
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=28.60 E-value=1.4e+02 Score=26.27 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=30.3
Q ss_pred ceEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q psy4399 77 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 125 (379)
Q Consensus 77 ~~vlVvD~GggT~disv~~~~~~~~~~~~~~~~~~lGG~~id~~l~~~l 125 (379)
..++.+|+|+..+.+.++...+..+...........+.+.+-+.+.+.+
T Consensus 6 ~~~lgiDiggt~~~~~l~d~~g~il~~~~~~~~~~~~~~~~~~~l~~~i 54 (326)
T 2qm1_A 6 KKIIGIDLGGTTIKFAILTTDGVVQQKWSIETNILEDGKHIVPSIIESI 54 (326)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCTTTTTTHHHHHHHHH
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 4789999999999999998765544433333322234444444444443
No 119
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=28.58 E-value=86 Score=28.32 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=37.4
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHH
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 242 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~ 242 (379)
+.+.+.+...|+++|++++++..+|+.|..+-|-...+.++--+.
T Consensus 50 ~~H~~~l~~~i~~~L~~ag~~~~did~Iav~~gPG~~t~lrvg~~ 94 (334)
T 3eno_A 50 VHHSEVIDTVISRALEKAKISIHDIDLIGFSMGPGLAPSLRVTAT 94 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCcchHHHHHH
Confidence 355667788999999999999999999999998888888765443
No 120
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=28.48 E-value=1.6e+02 Score=26.13 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=21.9
Q ss_pred CceEEEEEcCCceeEEEEEEEeCCeEEE
Q psy4399 76 ERNVLIFDLGGGTFDVSILTIEDGIFEV 103 (379)
Q Consensus 76 ~~~vlVvD~GggT~disv~~~~~~~~~~ 103 (379)
+..++.+|+|+..+.+.++...+..+..
T Consensus 23 ~~~~lgiDiGgt~i~~~l~d~~G~il~~ 50 (327)
T 4db3_A 23 NAMYYGFDVGGTKIEFGAFNEKLERVAT 50 (327)
T ss_dssp SCCEEEEEECSSEEEEEEECTTCCEEEE
T ss_pred CcEEEEEEECCCEEEEEEEeCCCcEEEE
Confidence 4478999999999999999875554433
No 121
>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}
Probab=28.46 E-value=47 Score=30.93 Aligned_cols=47 Identities=9% Similarity=0.038 Sum_probs=32.3
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~ 246 (379)
.++-++.++...|-...... .++|.|+++||-+ +.+.+++.|.+.++
T Consensus 302 a~d~f~yriak~Iga~aa~L----G~vDaIVfTGGIgEns~~vr~~I~~~l~ 349 (398)
T 4ijn_A 302 AYDVYIHRLRKYIGAYMAVL----GRTDVISFTAGVGENVPPVRRDALAGLG 349 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----SSCCEEEEEHHHHHHCHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCcEEEECCccccccHHHHHHHHHHHh
Confidence 34444555555555544443 2579999999988 56889999998774
No 122
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=28.36 E-value=6.1 Score=31.51 Aligned_cols=30 Identities=30% Similarity=0.176 Sum_probs=14.5
Q ss_pred eEeecccccccccCCCCcccccccccccccccccc
Q psy4399 316 LLDVTPQLAWRSFKNDSYGVDIDTIMNNLAIKIPL 350 (379)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ip~ 350 (379)
++||+|+..+..... |.....|++|+ ++|+
T Consensus 2 v~Dv~p~slGi~~~~---g~~~~li~rnt--~iP~ 31 (152)
T 2op6_A 2 NADVNPLTLGIETVG---GVMTKLIGRNT--VIPT 31 (152)
T ss_dssp -CCBCSSCEEEEETT---TEEEEEECTTC--BSSE
T ss_pred ceEeecccEEEEEeC---CEEEEEEeCCC--cccE
Confidence 569999932222211 22234566666 4554
No 123
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=28.32 E-value=2.1e+02 Score=22.18 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCCCCHH-HHHHHHHHHHH
Q psy4399 4 TKMKETAEAYLGKTVSNAVITVPAYFNDS-QRQATKDSGTI 43 (379)
Q Consensus 4 ~~l~~~a~~~~~~~~~~~vitvPa~~~~~-~r~~l~~a~~~ 43 (379)
+.+++.++..+|....=..++.|..-+.. -++.++++++.
T Consensus 16 ~gl~~~~~~i~G~~~~v~av~~~~~~~~~~~~~~i~~~i~~ 56 (144)
T 3lfh_A 16 KGLLSGAEVIIGKQENVHTVGLNLGDNIEVVRKEVEKIIKE 56 (144)
T ss_dssp HHHHHHHHHHHCCCSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 45777777778875445567777666643 35555555433
No 124
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=26.85 E-value=52 Score=30.76 Aligned_cols=47 Identities=6% Similarity=-0.033 Sum_probs=34.4
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCC-ChHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-r~p~v~~~l~~~f~ 246 (379)
.++-++.++.+.|-...... ..+|.|+++||-+ +.+.+|+.+.+.++
T Consensus 301 A~d~f~yri~k~IGa~~a~L----ggvDaiVFTgGIGEns~~vR~~i~~~l~ 348 (408)
T 1g99_A 301 ALEIFAYKVKKFIGEYSAVL----NGADAVVFTAGIGENSASIRKRILTGLD 348 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----TSCSEEEEEHHHHHHCHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHHhh----CCCCEEEECccccccCHHHHHHHHhhhh
Confidence 33445555666555555443 2489999999999 99999999998774
No 125
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=26.66 E-value=97 Score=27.83 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=34.7
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
....+.+...++++|++++++..+|+.|..+-|-+..+.++--
T Consensus 45 ~~h~~~l~~~i~~~L~~agi~~~did~Ia~~~GPG~~~~lrvg 87 (330)
T 2ivn_A 45 EHHARLMKPLLRKALSEAGVSLDDIDVIAFSQGPGLGPALRVV 87 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTTCCEEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCchHHHHHH
Confidence 4556677889999999999999999999998777777666543
No 126
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=26.05 E-value=1.3e+02 Score=25.95 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=19.8
Q ss_pred eEEEEEcCCceeEEEEEEEeCCeEEE
Q psy4399 78 NVLIFDLGGGTFDVSILTIEDGIFEV 103 (379)
Q Consensus 78 ~vlVvD~GggT~disv~~~~~~~~~~ 103 (379)
.++-+|+|+.++.+.++...+..+..
T Consensus 2 ~~lgidiggt~~~~~l~d~~g~il~~ 27 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQIRDR 27 (289)
T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEE
T ss_pred eEEEEEeCCCEEEEEEECCCCCEEEE
Confidence 36889999999999998765544433
No 127
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=25.65 E-value=2e+02 Score=25.09 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=31.0
Q ss_pred ceEEEEEcCCceeEEEEEEEeCCeEEEEEecC-CCCCCHHHHHHHHHHHHHH
Q psy4399 77 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAG-DTHLGGEDFDNRMVNHFVQ 127 (379)
Q Consensus 77 ~~vlVvD~GggT~disv~~~~~~~~~~~~~~~-~~~lGG~~id~~l~~~l~~ 127 (379)
..++-+|+||..+.+.++...+..+....... +...+.+.+-..+.+.+.+
T Consensus 11 ~~~lGiDiGgT~i~~~l~d~~G~il~~~~~~~~~~~~~~~~~~~~l~~~i~~ 62 (305)
T 1zc6_A 11 RYLIGVDGGGTGTRIRLHASDGTPLAMAEGGASALSQGIAKSWQAVLSTLEA 62 (305)
T ss_dssp CEEEEEEECSSCEEEEEEETTCCEEEEEEESCCCGGGCHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCccceEEEEEcCCCCEEEEEeCCCCCcccCHHHHHHHHHHHHHH
Confidence 47899999999999999986544443332211 1223455555555555443
No 128
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa}
Probab=24.72 E-value=53 Score=29.43 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=36.9
Q ss_pred HHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 197 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 197 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
++-..+.+...+++.|+++++.+++|+.|+.-+++.++ -+.+.+.|+
T Consensus 219 ~~~~~~~~~~~i~~aL~~agl~~~did~~~~H~~~~~~---~d~~~~~lg 265 (331)
T 2x3e_A 219 FGQAVTQMSDSVRRVLDRVGWQASDLHHLVPHQANTRI---LAAVADQLD 265 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCSEEEECCCCHHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHcC
Confidence 33445667788999999999999999999998887654 455777776
No 129
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=24.27 E-value=1.6e+02 Score=20.62 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=39.4
Q ss_pred HHHHHHHHcCC-CCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchH
Q psy4399 6 MKETAEAYLGK-TVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPT 56 (379)
Q Consensus 6 l~~~a~~~~~~-~~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~ 56 (379)
|.......... +-..++|..-..-....--.+.++++.||+..+.|+.++.
T Consensus 44 L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~l~~aG~~~v~l~t~~~ 95 (99)
T 2pfu_A 44 MITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEET 95 (99)
T ss_dssp HHHHHHHHSSSCCSSCEEEEECTTCCHHHHHHHHHHHHHTCCCCEECTTCCC
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 44444444333 3457889998888999999999999999999999988874
No 130
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=24.25 E-value=8.4 Score=34.20 Aligned_cols=45 Identities=7% Similarity=-0.049 Sum_probs=27.2
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHH-cCC-ceeeeccchHHHHHHh
Q psy4399 17 TVSNAVITVPAYFNDSQRQATKDSGTI-AGL-NVLRIINEPTAAAIAY 62 (379)
Q Consensus 17 ~~~~~vitvPa~~~~~~r~~l~~a~~~-AGl-~~~~lv~Ep~Aaa~~~ 62 (379)
.+..+.|++|..- ......+++..+. .++ ..+.+.++..||+++-
T Consensus 57 ~i~~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aalge 103 (291)
T 1zxo_A 57 KFNAVYFYGAGCT-PEKAPVLRRAIADSLPVIGNIKANSDMLAAAHGL 103 (291)
T ss_dssp ----CEEECTTCC-TTTTHHHHHHHHHHSCCCSCCEEECSHHHHHHHT
T ss_pred cccEEEEEcCCCC-HHHHHHHHHHHHHhcCCCceEEEECcHHHHHHhh
Confidence 4567899999864 2222345554443 354 3689999999999864
No 131
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}
Probab=24.04 E-value=87 Score=28.05 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=38.1
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
+++..++.+.+.+++.|+++++..++|+.+++-.++.+ +-+.+.+.++
T Consensus 228 v~~~~~~~~~~~i~~~l~~~gl~~~did~~~~Hq~~~~---i~~~~~~~lg 275 (333)
T 4dfe_A 228 VFKLAVNVLEKVAVEALEKANLSAEQIDWLIPHQANIR---IMQSTCRKLG 275 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHH---HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHH---HHHHHHHHhC
Confidence 34555677778899999999999999999999888765 4567777775
No 132
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=23.89 E-value=92 Score=26.23 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=37.3
Q ss_pred HHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHH
Q psy4399 199 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 242 (379)
Q Consensus 199 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~ 242 (379)
...+.+...|+++|+++++...+++.|.++-|-+...++|=-+.
T Consensus 44 ~Hse~L~p~i~~~L~~a~~~~~dld~Iav~~GPGsfTGlRiG~~ 87 (218)
T 2a6a_A 44 KHAEILPVVVKKLLDELDLKVKDLDVVGVGIGPGGLTGLRVGIA 87 (218)
T ss_dssp GGGGHHHHHHHHHHHHHTCCGGGCSEEEEECCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCchHhHHHHHH
Confidence 45566778899999999999999999999999888888876544
No 133
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=23.89 E-value=3.9e+02 Score=24.01 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=28.2
Q ss_pred CCceEEEEEcCCceeEEEEEEEe-CCeEEEEEec-CCCCCCH
Q psy4399 75 GERNVLIFDLGGGTFDVSILTIE-DGIFEVKSTA-GDTHLGG 114 (379)
Q Consensus 75 ~~~~vlVvD~GggT~disv~~~~-~~~~~~~~~~-~~~~lGG 114 (379)
....+.++|+|.-++-+.|+++. ++.++.+... ....+|-
T Consensus 14 ~~~~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~vrLg~ 55 (343)
T 3cer_A 14 ESVTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQ 55 (343)
T ss_dssp CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTT
T ss_pred CCCeEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEEeeCCC
Confidence 45679999999999999999997 4445544322 2245553
No 134
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=23.82 E-value=42 Score=31.43 Aligned_cols=48 Identities=27% Similarity=0.399 Sum_probs=36.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeeeccchHH-HHHHhcccc
Q psy4399 18 VSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTA-AAIAYGLDK 66 (379)
Q Consensus 18 ~~~~vitvPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~A-aa~~~~~~~ 66 (379)
+.++|++.|+. +..---.+.-||..+|++.+.-+-=+.| ||++|++..
T Consensus 160 V~~Iv~~tPp~-~G~i~p~iL~AA~l~Gv~eIy~vGGAQAIAAlAyGTet 208 (423)
T 4gic_A 160 VPELIMAVPAP-RGELNALVLAAAYISGVDRVFRIGGAQAVAALAYGTET 208 (423)
T ss_dssp CSEEEEECCCG-GGCCCHHHHHHHHHHTCCEEECCCHHHHHHHHHHCCSS
T ss_pred CCeEEEecCCC-CCCccHHHHHHHHhcCCcEEEEcCChhhhhhhccCCCc
Confidence 45789999983 2222346888999999999988887777 678888764
No 135
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=23.71 E-value=2.6e+02 Score=25.28 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=22.7
Q ss_pred CceEEEEEcCCceeEEEEEEEeCCeEEEE
Q psy4399 76 ERNVLIFDLGGGTFDVSILTIEDGIFEVK 104 (379)
Q Consensus 76 ~~~vlVvD~GggT~disv~~~~~~~~~~~ 104 (379)
...++.+|+|+..+.+.++...+......
T Consensus 86 ~~~~lGIDiGgt~i~~~l~d~~G~vl~~~ 114 (380)
T 2hoe_A 86 CAYVLGIEVTRDEIAACLIDASMNILAHE 114 (380)
T ss_dssp GCEEEEEEECSSEEEEEEEETTCCEEEEE
T ss_pred CCeEEEEEECCCEEEEEEECCCCCEEEEE
Confidence 45789999999999999998765554433
No 136
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=23.53 E-value=1.1e+02 Score=26.67 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=30.0
Q ss_pred EEEEEcCCceeEEEEEEEeCCeEEEEEecC-CC-CCCHHHHHHHHHHHHHH
Q psy4399 79 VLIFDLGGGTFDVSILTIEDGIFEVKSTAG-DT-HLGGEDFDNRMVNHFVQ 127 (379)
Q Consensus 79 vlVvD~GggT~disv~~~~~~~~~~~~~~~-~~-~lGG~~id~~l~~~l~~ 127 (379)
++-+|+||..+.+.++. .+..+....... +. ..+.+.+-+.+.+.+.+
T Consensus 2 ~lgiDiGGT~~~~~l~d-~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 51 (291)
T 1zbs_A 2 ILIGDSGSTKTDWCIAK-EGKSLGRFQTSGINPFQQDRNEIDTALRSEVLP 51 (291)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEEECCCTTTSCHHHHHHHHTTTTHH
T ss_pred EEEEEeCccceEEEEEe-CCeEEEEEECCCCCcccCCHHHHHHHHHHHHHH
Confidence 57899999999999998 433333322222 22 23777676666655543
No 137
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=22.57 E-value=86 Score=26.34 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=35.9
Q ss_pred hhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHH
Q psy4399 201 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 243 (379)
Q Consensus 201 ~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~ 243 (379)
.+.+...|+++|+++++...+++.|.++-|-....++|=-+.-
T Consensus 36 s~~L~p~i~~~L~~a~~~~~dld~Iav~~GPGsfTglRig~~~ 78 (213)
T 3r6m_A 36 TKKVLPMVDEVLKEAGLTLQDLDALAFGRGPGSFTGVRIGIGI 78 (213)
T ss_dssp HHHHHHHHHHHHHTTTCCTTTCSEEEEEEESSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHccEEEEecCCCchhhHHHHHHH
Confidence 3456678899999999999999999999998888888866543
No 138
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=22.52 E-value=93 Score=26.38 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=33.0
Q ss_pred hchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHH
Q psy4399 202 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240 (379)
Q Consensus 202 ~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~ 240 (379)
+.+...|+++|+++++...+++.|.+.=|-....++|--
T Consensus 36 ~~l~~~i~~~L~~a~~~~~did~Iav~~GPGsftglRig 74 (231)
T 2gel_A 36 QRILPMVQEILAASGASLNEIDALAFGRGPGSFTGVRIG 74 (231)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCSEEEEECCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCChhHhHHHH
Confidence 446788899999999999999999999888877888743
No 139
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=22.49 E-value=1.8e+02 Score=25.56 Aligned_cols=43 Identities=14% Similarity=0.310 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhch-----------hhHHHHHHHHhcCCcCCcCEEEEEcCCCCh
Q psy4399 190 RARFEELNADLFRGT-----------MEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 234 (379)
Q Consensus 190 r~~~~~~~~~~~~~i-----------~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~ 234 (379)
|+|+.++++.+.+.+ .+.|.+.|...+. .++|-++-+||-.|+
T Consensus 186 R~EIv~A~r~la~~v~~g~l~~~dI~e~~i~~~L~t~~~--PdPDLlIRTsGE~RL 239 (284)
T 2vg3_A 186 RTEITEATREIAREVAAGRLNPERITESTIARHLQRPDI--PDVDLFLRTSGEQRS 239 (284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCGGGCCHHHHHHHSSSTTC--CCCSEEEECTTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHCCHHHHHHHhccCCC--CCCcEEEeCCCCccc
Confidence 888888777766432 2344455544443 378999999997665
No 140
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=22.43 E-value=4e+02 Score=23.44 Aligned_cols=71 Identities=24% Similarity=0.301 Sum_probs=42.7
Q ss_pred CCCCCcEEEEcCCC------------CCHHHHHHHHHHHHHcCCceeeeccchHHHHHHhccccc-----cCCCCCCCCc
Q psy4399 15 GKTVSNAVITVPAY------------FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKK-----VGSAAGSGER 77 (379)
Q Consensus 15 ~~~~~~~vitvPa~------------~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aaa~~~~~~~~-----~~~~~~~~~~ 77 (379)
+.++..+.|++|.. |. ..++.++ +..|++.+.+.++..|+|++-..... ......+...
T Consensus 64 ~~~i~gigi~~pG~vd~~~~~~~nl~w~-~~~~~l~---~~~~~p~V~v~NDanaaalgE~~~~~~~~~~~g~g~~~~~~ 139 (332)
T 1sz2_A 64 KVEVKDGCIAIACPITGDWVAMTNHTWA-FSIAEMK---KNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGK 139 (332)
T ss_dssp CCCCCEEEEEESSCCCSSEECCSSSCCC-EEHHHHH---HHHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTC
T ss_pred CCCccEEEEEEeCceeCCEEeeeCCCCc-CCHHHHH---HHhCCCcEEEEeCHhHHhccccccChhhheecCCCCCCCCC
Confidence 44567788888863 44 1233333 33588878999999999998643210 0000011346
Q ss_pred eEEEEEcCCcee
Q psy4399 78 NVLIFDLGGGTF 89 (379)
Q Consensus 78 ~vlVvD~GggT~ 89 (379)
+++++-+|-|-=
T Consensus 140 ~~~~v~~GTGiG 151 (332)
T 1sz2_A 140 PIAVYGAGTGLG 151 (332)
T ss_dssp CEEEEEESSSEE
T ss_pred cEEEEEcCccce
Confidence 678888888843
No 141
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=22.04 E-value=1.6e+02 Score=23.34 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=10.2
Q ss_pred CceEEEEEcCCcee
Q psy4399 76 ERNVLIFDLGGGTF 89 (379)
Q Consensus 76 ~~~vlVvD~GggT~ 89 (379)
+..++++|+-|||.
T Consensus 78 ~gVLiLtDl~GGSP 91 (159)
T 3mtq_A 78 DELIVITDIFAGSV 91 (159)
T ss_dssp SEEEEEESCTTSHH
T ss_pred CCEEEEEeCCCCCH
Confidence 45677899977764
No 142
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=21.99 E-value=1.1e+02 Score=26.58 Aligned_cols=25 Identities=24% Similarity=0.700 Sum_probs=21.8
Q ss_pred CCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 220 AQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 220 ~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
.+++.|+| |++.+|++.+.+++.++
T Consensus 177 ~g~D~iVL--GCTh~pll~~~i~~~~~ 201 (269)
T 3ist_A 177 TKIDTVIL--GCTHYPLLKPIIENFMG 201 (269)
T ss_dssp SCCCEEEE--CSTTGGGGHHHHHHHHC
T ss_pred CCCCEEEE--CCCCHHHHHHHHHHHcC
Confidence 35788777 99999999999999986
No 143
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=21.76 E-value=80 Score=27.72 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.6
Q ss_pred CcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 221 QIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 221 ~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
+++.|+| |++-+|++.+.+++.++
T Consensus 196 g~D~iIL--GCTh~PlL~~~i~~~~~ 219 (274)
T 3uhf_A 196 TPDALIL--ACTHFPLLGRSLSKYFG 219 (274)
T ss_dssp CCSEEEE--CSTTGGGGHHHHHHHHC
T ss_pred CCCEEEE--CCCChHHHHHHHHHHcC
Confidence 5788877 99999999999999996
No 144
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=21.48 E-value=2e+02 Score=24.34 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhch---------------hhHHHHHHHHhcCCcCCcCEEEEEcCCCChH
Q psy4399 190 RARFEELNADLFRGT---------------MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 235 (379)
Q Consensus 190 r~~~~~~~~~~~~~i---------------~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p 235 (379)
|+|+..+++.+.+.+ .+.+.+.|...+. .++|-++-+||-.|+.
T Consensus 132 R~eI~~A~r~l~~~v~~g~l~~~~~~~~I~e~~i~~~L~t~~~--pdpDLlIRTsGe~RLS 190 (227)
T 2vg0_A 132 RREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQ--PDPDLVIRTSGEQRLS 190 (227)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHCCHHHHHHHSTTTTS--CCCSEEEECTTCCCCT
T ss_pred HHHHHHHHHHHHHHHHcCCCChhHhhccCCHHHHHHhhccCCC--CCCcEEEEcCCCcccc
Confidence 788777777665432 1233444433333 3789999999977653
No 145
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.42 E-value=53 Score=28.00 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=28.9
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCceeeeccchHH
Q psy4399 25 VPAYFNDSQRQATKDSGTIAGLNVLRIINEPTA 57 (379)
Q Consensus 25 vPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~A 57 (379)
-|...+.-||+++.=|...+.=+.+.+++||++
T Consensus 136 ~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 168 (240)
T 1ji0_A 136 LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSL 168 (240)
T ss_dssp BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTT
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 377889999999988888888889999999987
No 146
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=21.39 E-value=39 Score=28.77 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=29.1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCceeeeccchHHH
Q psy4399 25 VPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 58 (379)
Q Consensus 25 vPa~~~~~~r~~l~~a~~~AGl~~~~lv~Ep~Aa 58 (379)
.|...+.-||+++.=|...+.=+.+.+++||+++
T Consensus 142 ~~~~LSgGq~QRv~iAral~~~p~llllDEPts~ 175 (235)
T 3tif_A 142 KPNQLSGGQQQRVAIARALANNPPIILADQPTWA 175 (235)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 4778899999988888888888889999999873
No 147
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=21.21 E-value=2e+02 Score=24.90 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=35.8
Q ss_pred CCCceeEEEeecccCCcceeeeeecccccccHHHHHHHHHHHhhchh-----------hHHHHHHHHhcCCcCCcCEEEE
Q psy4399 159 SSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTM-----------EPVEKSLRDAKMDKAQIHDIVL 227 (379)
Q Consensus 159 s~~~~~~~~i~~~~~~~~~~~~i~~~~~~ltr~~~~~~~~~~~~~i~-----------~~i~~~l~~~~~~~~~i~~VvL 227 (379)
..+....+++-..+.| |+|+...++.+.+++. +.+.+.|...+. .++|-++=
T Consensus 132 ~~n~~~~lnia~~Ygg---------------R~EI~~Avr~ia~~v~~g~l~~~~I~e~~i~~~L~t~~~--PdpDLlIR 194 (253)
T 3sgv_B 132 AGNTGLTLNIAANYGG---------------RWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHEL--APVDLVIR 194 (253)
T ss_dssp TTCCSCEEEEESSCCH---------------HHHHHHHHHHHHHHHHHTSSCGGGCCHHHHHTTSTTTTS--CCCCEEEE
T ss_pred ccCCCeEEEEEecCCC---------------HHHHHHHHHHHHHHHHcCCCChhhCCHHHHHHhhcccCC--CCCcEEEE
Confidence 3455556666554444 8888888877665431 223333333333 36899999
Q ss_pred EcCCCCh
Q psy4399 228 VGGSTRI 234 (379)
Q Consensus 228 vGG~sr~ 234 (379)
+||-.|+
T Consensus 195 TsGE~RL 201 (253)
T 3sgv_B 195 TGGEHRI 201 (253)
T ss_dssp ESSCCCC
T ss_pred ecCCCcc
Confidence 9997765
No 148
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A
Probab=20.82 E-value=71 Score=29.44 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=36.1
Q ss_pred HHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 198 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 198 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
....+.+...+++.|+++++.+++|+.+++-+++.++ -+.+.+.++
T Consensus 283 ~~~~~~~~~~i~~aL~~agl~~~dId~~~~H~~~~~i---~d~~~~~lg 328 (393)
T 1ted_A 283 GYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKI---IEQSVRSLG 328 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCSCEEECCSCHHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHhHCCEEEECCCcHHH---HHHHHHHcC
Confidence 3445667788899999999999999999998877653 456777775
No 149
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=20.68 E-value=1.1e+02 Score=25.90 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHH
Q psy4399 192 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 243 (379)
Q Consensus 192 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~ 243 (379)
+-+++.+...+.+.+.+.+.+++.+ .-.+.|.||+|-.+..+..++.
T Consensus 9 ~~~~l~~~~A~~i~~~i~~~i~~~~-----~~~l~LsgGstp~~~y~~L~~~ 55 (226)
T 3lwd_A 9 GRQRLAERLADTVAQALEADLAKRE-----RALLVVSGGSTPKPFFTSLAAK 55 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS-----CEEEEECCSSTTHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCC-----CEEEEEcCCCCHHHHHHHHHhc
Confidence 3344444555556666666665422 3579999999999988887763
No 150
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=20.63 E-value=9.5 Score=32.70 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=13.2
Q ss_pred EeecccccccccCCCCccccccccccccc
Q psy4399 317 LDVTPQLAWRSFKNDSYGVDIDTIMNNLA 345 (379)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 345 (379)
+||+|+..+.... .|+....|++|++
T Consensus 1 ~Dv~p~slGie~~---~g~~~~li~rnt~ 26 (227)
T 1u00_A 1 MDVIPLSLGLETM---GGLVEKVIPRNTT 26 (227)
T ss_dssp CCBCSSCEEEEET---TTEEEEEECTTCB
T ss_pred CCcccceEEEEEe---CCEEEEEEeCcCc
Confidence 4899993332221 1333345667763
No 151
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A
Probab=20.57 E-value=1.1e+02 Score=27.56 Aligned_cols=50 Identities=8% Similarity=-0.023 Sum_probs=38.7
Q ss_pred HHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHHHcC
Q psy4399 194 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246 (379)
Q Consensus 194 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~~f~ 246 (379)
.++++..++.+.+.+++.|+++++..++|+.+++-.++.+ +.+.+.+.++
T Consensus 238 ~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~v~Hq~~~~---i~~~~~~~lg 287 (345)
T 3s21_A 238 RLLLIEGIKLAQKTFVAAKQVLGWAVEELDQFVIHQVSRP---HTAAFVKSFG 287 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCGGGCSEEEECCSCHH---HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEeCCCCHH---HHHHHHHHcC
Confidence 3445555667778889999999999999999999887765 4566777775
No 152
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Probab=20.13 E-value=85 Score=29.12 Aligned_cols=47 Identities=9% Similarity=-0.062 Sum_probs=33.1
Q ss_pred HHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCC-hHHHHHHHHHHcC
Q psy4399 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR-IPKVQKLLQDFFN 246 (379)
Q Consensus 196 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr-~p~v~~~l~~~f~ 246 (379)
.++-++.++.+.|-......+ .+|.|+++||-+. .+.+++.|.+.+.
T Consensus 293 A~d~f~yri~k~Iga~aa~Lg----~vDaIVfTGGIgens~~vR~~i~~~l~ 340 (391)
T 3r9p_A 293 AYSVFTHRLRKYIGAYLAVLG----HTDVISFTAGIGENDAAVRRDAVSGME 340 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS----SCCEEEEEHHHHHHCHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CCCEEEECcccccCCHHHHHHHHHHHH
Confidence 344455555555555544432 5899999999887 5889999998774
No 153
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=20.03 E-value=1.5e+02 Score=25.04 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhcCCcCCcCEEEEEcCCCChHHHHHHHHH
Q psy4399 190 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 243 (379)
Q Consensus 190 r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~sr~p~v~~~l~~ 243 (379)
++++.+ ...+.+.+.+.+.+++.+ --.+.|.||+|-.+..+..++.
T Consensus 14 ~~~l~~---~~A~~i~~~i~~~i~~~~-----~~~l~lsgGstp~~~y~~L~~~ 59 (233)
T 3nwp_A 14 PSALEQ---QLASKIASQLQEAVDARG-----KASLVVSGGSTPLKLFQLLSMK 59 (233)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHS-----CEEEEECCSSTTHHHHHHHHHC
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhCC-----CEEEEEcCCCCHHHHHHHHHhc
Confidence 444443 444556666667766543 2469999999999988888764
Done!