RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4399
(379 letters)
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 568 bits (1465), Expect = 0.0
Identities = 241/304 (79%), Positives = 254/304 (83%), Gaps = 44/304 (14%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
MVLTKMKE AEAYLGKTV+NAVITVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAAI
Sbjct: 117 MVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAI 176
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDKK G GERNVLIFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGEDFDNR
Sbjct: 177 AYGLDKK-----GGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNR 231
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+VNHFVQEFKRK+KKD++ NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG+DFYT
Sbjct: 232 LVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYT- 290
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
S+TRARFEEL ADLFRGT+EPVEK LRDAK+DK+QIHDIVLVGGSTRIPK
Sbjct: 291 ------SITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPK---- 340
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
VQKLLQDFFNGKELNKSINPDEAVAYGAAVQA
Sbjct: 341 ----------------------------VQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 372
Query: 301 AILH 304
AIL
Sbjct: 373 AILS 376
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 517 bits (1333), Expect = 0.0
Identities = 223/322 (69%), Positives = 252/322 (78%), Gaps = 45/322 (13%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
MVL KMKE AEAYLGK V +AV+TVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAAI
Sbjct: 123 MVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAI 182
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDKK G GE+NVLIFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGEDFDNR
Sbjct: 183 AYGLDKK-----GDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNR 237
Query: 121 MVNHFVQEFKRKYK-KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYT 179
+V VQ+FKRK + KDL++N+RALRRLRT CERAKRTLSSSTQA+IEIDSLFEG+D+
Sbjct: 238 LVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNV 297
Query: 180 SVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 239
+++RARFEEL D FR T++PVEK L+DA MDK +H++VLVGGSTRIPK
Sbjct: 298 -------TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPK--- 347
Query: 240 LLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299
VQ L++DFFNGKE KSINPDEAVAYGAAVQ
Sbjct: 348 -----------------------------VQSLIKDFFNGKEPCKSINPDEAVAYGAAVQ 378
Query: 300 AAILHGDKSEEVQDLLLLDVTP 321
AAIL G++S +VQDLLLLDVTP
Sbjct: 379 AAILTGEQSSQVQDLLLLDVTP 400
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 476 bits (1228), Expect = e-166
Identities = 188/323 (58%), Positives = 231/323 (71%), Gaps = 50/323 (15%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
MVL K+KETAEAYLG+ V++AVITVPAYFND+QRQATKD+G IAGLNVLRIINEPTAAA+
Sbjct: 116 MVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAAL 175
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDKK ERNVL+FDLGGGTFDVSIL I DG+FEV +T GDTHLGGEDFDNR
Sbjct: 176 AYGLDKK------DKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNR 229
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFE-GVDFY 178
+V+HFV+EFK+KY DL+ + RAL+RLR A E+AK LSS T+ ++ + G D
Sbjct: 230 LVDHFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVS 289
Query: 179 TSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 238
++TRA+FEEL ADLF T+EPVEK+L+DAK+ K++I ++VLVGGSTRIP VQ
Sbjct: 290 G-------TLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQ 342
Query: 239 KLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAV 298
+L+++FF GKE +K +NPDEAVA GAAV
Sbjct: 343 ELVKEFF---------------------------------GKEPSKGVNPDEAVAIGAAV 369
Query: 299 QAAILHGDKSEEVQDLLLLDVTP 321
QA +L G +V+D+LLLDVTP
Sbjct: 370 QAGVLSGT--FDVKDVLLLDVTP 390
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 454 bits (1171), Expect = e-160
Identities = 181/301 (60%), Positives = 223/301 (74%), Gaps = 45/301 (14%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
MVLTKMKE AEAYLGK V +AV+TVPAYFND+QRQATKD+GTIAGLNV+RIINEPTAAAI
Sbjct: 119 MVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAI 178
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDKK GE+N+L+FDLGGGTFDVS+LTI++G+FEV +T GDTHLGGEDFD R
Sbjct: 179 AYGLDKK------GGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQR 232
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
++ HF++ FK+K+ KD++ +KRAL++LR E+AKR LSS Q IEI+SLF+G DF
Sbjct: 233 VMEHFIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSE- 291
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
++TRA+FEELN DLF+ T++PV+K L DA + K+ I +IVLVGGSTRIPK
Sbjct: 292 ------TLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPK---- 341
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
VQ+LL++FFNGKE ++ INPDEAVAYGAAVQA
Sbjct: 342 ----------------------------VQQLLKEFFNGKEPSRGINPDEAVAYGAAVQA 373
Query: 301 A 301
Sbjct: 374 G 374
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 428 bits (1103), Expect = e-146
Identities = 163/325 (50%), Positives = 213/325 (65%), Gaps = 55/325 (16%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M+L K+K+ AE YLG+ V+ AVITVPAYFND+QRQATKD+G IAGL VLRIINEPTAAA+
Sbjct: 116 MILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAAL 175
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDKK G+ +L++DLGGGTFDVSIL I DG+FEV ST GDTHLGG+DFD R
Sbjct: 176 AYGLDKK-------GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQR 228
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
++++ EFK++ DL +K AL+RL+ A E+AK LSS+ Q I +L F T+
Sbjct: 229 IIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEI---NL----PFITA 281
Query: 181 VTRA----RLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236
+ +TRA+FEEL DL T+EP +++L+DA + + I +++LVGGSTR+P
Sbjct: 282 DASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPA 341
Query: 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGA 296
VQ+L+++FF GKE NK +NPDE VA GA
Sbjct: 342 VQELVKEFF---------------------------------GKEPNKGVNPDEVVAIGA 368
Query: 297 AVQAAILHGDKSEEVQDLLLLDVTP 321
A+Q +L GD V+D+LLLDVTP
Sbjct: 369 AIQGGVLAGD----VKDVLLLDVTP 389
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 377 bits (970), Expect = e-130
Identities = 156/307 (50%), Positives = 202/307 (65%), Gaps = 51/307 (16%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M+L K+KE AEAYLG+ V+ AVITVPAYFNDSQRQATKD+G IAGL VLRIINEPTAAA+
Sbjct: 117 MILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 176
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDKK G +L++DLGGGTFDVSIL I DG+FEV +T GDTHLGG+DFD R
Sbjct: 177 AYGLDKK-------GNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQR 229
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+++ V+EFK++ DL +K AL+RL+ A E+AK LSS T+ I + F T+
Sbjct: 230 IIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINL-------PFITA 282
Query: 181 VTRA----RLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236
+++TRA+FEEL DL T+EPV+++L+DAK+ + I +++LVGGSTRIP
Sbjct: 283 DATGPKHLEMTLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPA 342
Query: 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGA 296
VQ+L+++ F GKE NK +NPDE VA GA
Sbjct: 343 VQELVKELF---------------------------------GKEPNKGVNPDEVVAIGA 369
Query: 297 AVQAAIL 303
A+Q +L
Sbjct: 370 AIQGGVL 376
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 381 bits (980), Expect = e-128
Identities = 165/321 (51%), Positives = 211/321 (65%), Gaps = 46/321 (14%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M+L K+K+ AEAYLG+ V+ AVITVPAYFND+QRQATKD+G IAGL VLRIINEPTAAA+
Sbjct: 113 MILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAAL 172
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDK + +L+FDLGGGTFDVSIL I DG+FEV STAGDTHLGG+DFD R
Sbjct: 173 AYGLDK------SKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQR 226
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+++ EFK++ DL+ +K AL+RL+ A E+AK LSS I + +
Sbjct: 227 IIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKH 286
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
+ +++TRA+FEEL ADL T EPV ++L+DA + + I +++LVGGSTRIP VQ+L
Sbjct: 287 LE---MTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQEL 343
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
++DFF GKE NKS+NPDE VA GAA+Q
Sbjct: 344 VKDFF---------------------------------GKEPNKSVNPDEVVAIGAAIQG 370
Query: 301 AILHGDKSEEVQDLLLLDVTP 321
+L GD V+D+LLLDVTP
Sbjct: 371 GVLKGD----VKDVLLLDVTP 387
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 364 bits (937), Expect = e-125
Identities = 143/301 (47%), Positives = 191/301 (63%), Gaps = 45/301 (14%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
++L K+KE AEAYLG+ V+ AVITVPAYFND+QR+ATK++ IAGLNV+R+INEPTAAA+
Sbjct: 114 LILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAAL 173
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDKK R +L+FDLGGGTFDVS++ +E G+FEV +T GD HLGG+DFDN
Sbjct: 174 AYGLDKK-----DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNA 228
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+ ++ ++FK K DL + RALRRL+ A E+AK LSSS +A+I + L G D
Sbjct: 229 LADYLAEKFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDL--- 285
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
+ +TR FEEL L T++ VE+ L DA + I ++LVGGS+RIP V++L
Sbjct: 286 ----EVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVREL 341
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
L++ F GK+ +SI+PDEAVA GAA+ A
Sbjct: 342 LEELF---------------------------------GKKPLRSIDPDEAVALGAAIYA 368
Query: 301 A 301
A
Sbjct: 369 A 369
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 369 bits (950), Expect = e-124
Identities = 171/321 (53%), Positives = 218/321 (67%), Gaps = 51/321 (15%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M+LTK+KE AEAYLG+ V++AVITVPAYFND+QRQATKD+ IAGLNVLR+INEPTAAA+
Sbjct: 103 MILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAAL 162
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDK E+ VL++DLGGGTFDVS+L I DG+FEV +T GD HLGG+DFDN
Sbjct: 163 AYGLDKG-------KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNA 215
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
++++ V EFK K DL ++K AL+RLR A E+AK LSS+TQ SI + S+ +D
Sbjct: 216 LIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDL--- 272
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
+TRA+FEEL DL T+EPVE++L+DA ++K+ I ++LVGGSTRIP VQ+L
Sbjct: 273 ----LKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQEL 328
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
+++FF GKE KSINPDEAVA GAA+QA
Sbjct: 329 VKEFF---------------------------------GKEPEKSINPDEAVALGAAIQA 355
Query: 301 AILHGDKSEEVQDLLLLDVTP 321
A+L G+ D+LLLDV P
Sbjct: 356 AVLSGEVP----DVLLLDVIP 372
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 354 bits (911), Expect = e-121
Identities = 156/303 (51%), Positives = 200/303 (66%), Gaps = 43/303 (14%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
VL KMKETAEAYLGK V NAVITVPAYFNDSQRQATKD+G IAGLNVLR+INEPTAAA+
Sbjct: 118 FVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAAL 177
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDKK ++ + ++DLGGGTFD+SIL I+ G+FEVKST GDT LGGEDFDN
Sbjct: 178 AYGLDKK-------DDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNA 230
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
++ H V+EFK++ DLT + AL+RLR A E+AK LSSS Q I + + +
Sbjct: 231 LLRHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADA---SG 287
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
+ +TRA+FE L DL + T+EP +K+L+DA + K+ I +++LVGG TR+PKVQ+
Sbjct: 288 PKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQET 347
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
+++ F GKE +K +NPDEAVA GAA+Q
Sbjct: 348 VKEIF---------------------------------GKEPSKGVNPDEAVAIGAAIQG 374
Query: 301 AIL 303
+L
Sbjct: 375 GVL 377
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 345 bits (886), Expect = e-113
Identities = 167/321 (52%), Positives = 214/321 (66%), Gaps = 45/321 (14%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M+L K+K+ AEAYLG+ V+ AVITVPAYF D+QRQATKD+GTIAGL VLRIINEPTAAA+
Sbjct: 116 MILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAAL 175
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDK+ E+ +L+FDLGGGTFDVSIL + DG+FEVK+TAG+ HLGG+DFDN
Sbjct: 176 AYGLDKQ------DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNC 229
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+V+ V+ F+++ DL+ +K AL+RLR A E+AK LSS SI + F D T
Sbjct: 230 IVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLP--FITAD-ETG 286
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
+ +TRA+FEEL DL T+EP++++L+DA + I ++LVGGSTRIP VQ+
Sbjct: 287 PKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEA 346
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
+Q FF GK PD +S+NPDEAVA GAA+QA
Sbjct: 347 IQKFFGGK------QPD--------------------------RSVNPDEAVALGAAIQA 374
Query: 301 AILHGDKSEEVQDLLLLDVTP 321
+L G EV+DLLLLDVTP
Sbjct: 375 GVLGG----EVKDLLLLDVTP 391
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 336 bits (863), Expect = e-110
Identities = 169/324 (52%), Positives = 214/324 (66%), Gaps = 55/324 (16%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
VL K+ E A YLG+TV+ AVITVPAYFNDSQRQATKD+G IAGL VLRIINEPTAA++A
Sbjct: 119 VLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLA 178
Query: 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 121
YGLDKK +L+FDLGGGTFDVSIL + DG+FEV ST+GDTHLGG+DFD ++
Sbjct: 179 YGLDKK-------NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKI 231
Query: 122 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSV 181
VN ++EFK+K DL+ +++AL+RL A E+AK LS+ TQ I + F T+
Sbjct: 232 VNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINL-------PFITAT 284
Query: 182 TRA----RLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 237
++TRA+FEEL +DL PVE +L+DAK+DK+ I ++VLVGGSTRIP +
Sbjct: 285 QTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAI 344
Query: 238 QKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAA 297
Q+L V+KLL GK+ N+S+NPDE VA GAA
Sbjct: 345 QEL----------------------------VKKLL-----GKKPNQSVNPDEVVAIGAA 371
Query: 298 VQAAILHGDKSEEVQDLLLLDVTP 321
VQA +L G EV+D+LLLDVTP
Sbjct: 372 VQAGVLAG----EVKDILLLDVTP 391
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 334 bits (859), Expect = e-109
Identities = 161/320 (50%), Positives = 211/320 (65%), Gaps = 47/320 (14%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
VL KMKETAE+YLG+ V AVITVPAYFNDSQRQATKD+G IAGL+VLRIINEPTAAA+A
Sbjct: 158 VLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALA 217
Query: 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 121
+G+DK G + + ++DLGGGTFD+SIL I G+FEVK+T G+T LGGEDFD R+
Sbjct: 218 FGMDKNDG-------KTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRI 270
Query: 122 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSV 181
+N+ + EFK++ DL +K AL+RLR A E AK LSS TQ EI+ F D +
Sbjct: 271 LNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQ--TEINLPFITAD-QSGP 327
Query: 182 TRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 241
++ ++RA+ EEL DL + T+EP EK ++DA + K +++D++LVGG TR+PKV + +
Sbjct: 328 KHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETV 387
Query: 242 QDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301
+ F GKE +K +NPDEAVA GAA+QA
Sbjct: 388 KKIF---------------------------------GKEPSKGVNPDEAVAMGAAIQAG 414
Query: 302 ILHGDKSEEVQDLLLLDVTP 321
+L G E++DLLLLDVTP
Sbjct: 415 VLKG----EIKDLLLLDVTP 430
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 319 bits (818), Expect = e-107
Identities = 152/302 (50%), Positives = 203/302 (67%), Gaps = 46/302 (15%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
VL K+K+TAEAYLGK V AVITVPAYFNDSQRQATKD+GT+AGL VLRIINEPTAAA+A
Sbjct: 118 VLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALA 177
Query: 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 121
YG+DK+ +N+ ++DLGGGTFD+SIL IEDG+FEVK+T GDT LGGEDFDN +
Sbjct: 178 YGIDKR------KENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAI 231
Query: 122 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSV 181
V + ++EFKRKYK DLT NK+A++R++ A E+AK LSSS ++ IE+ L
Sbjct: 232 VQYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHL---- 287
Query: 182 TRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 241
R+++TR FE+L + + T+ P ++ L+DA + K I +++LVGG TR+P +Q ++
Sbjct: 288 ---RITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVV 344
Query: 242 QDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301
Q+ F GK+ +KS+NPDEAVA GAA+Q +
Sbjct: 345 QEIF---------------------------------GKKPSKSVNPDEAVALGAAIQGS 371
Query: 302 IL 303
IL
Sbjct: 372 IL 373
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 320 bits (823), Expect = e-104
Identities = 145/325 (44%), Positives = 196/325 (60%), Gaps = 55/325 (16%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M+L K+ + A YLG+ V+ AVITVPAYFNDSQRQAT+D+G IAGL V RI+NEPTAAA+
Sbjct: 118 MILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAAL 177
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLD+ S + VL+FDLGGGTFDVS+L + +G+FEVK+T+GDT LGG DFD R
Sbjct: 178 AYGLDR-------SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKR 230
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+V+ ++F K DL +++AL+RL A E+AK LS + I + F T+
Sbjct: 231 IVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISL-------PFITA 283
Query: 181 VTRARL----SVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236
+ R +FE L DL + PV+++L+DA + I ++VLVGGSTR+P
Sbjct: 284 TEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPM 343
Query: 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGA 296
VQ+L++ +E N+++NPDE VA GA
Sbjct: 344 VQQLVRTLI---------------------------------PREPNQNVNPDEVVAVGA 370
Query: 297 AVQAAILHGDKSEEVQDLLLLDVTP 321
A+QA IL G E++DLLLLDVTP
Sbjct: 371 AIQAGILAG----ELKDLLLLDVTP 391
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 296 bits (760), Expect = 1e-98
Identities = 125/301 (41%), Positives = 169/301 (56%), Gaps = 51/301 (16%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
+VL +KE AEAYLG+ V+ AVI+VPAYFND QR+ATK +G +AGL V R+INEPTAAA+
Sbjct: 90 LVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAAL 149
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGL K E L+FDLGGGTFDVS+L + DG+ EV+++AGD +LGGEDF
Sbjct: 150 AYGLHDK------DEETKFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRA 203
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+ F++ K + L RL A ERAKR LS +A + + EG
Sbjct: 204 LAEAFLK--KHGLDFEKLDPSE-LARLLRAAERAKRALSDQEEAEMSVR--IEG------ 252
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
++TR FEE+ L +P+E++LRDA++ + I +I+LVGG+TR+P V+KL
Sbjct: 253 -EELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKL 311
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
+ F G+ +NPDE VA GAA+QA
Sbjct: 312 VSRLF---------------------------------GRFPLVHLNPDEVVALGAAIQA 338
Query: 301 A 301
Sbjct: 339 G 339
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 300 bits (770), Expect = 2e-96
Identities = 157/320 (49%), Positives = 198/320 (61%), Gaps = 47/320 (14%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
VL K+ + A +L V+ AVITVPAYFNDSQR ATKD+G IAGL VLRIINEPTAA++A
Sbjct: 156 VLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLA 215
Query: 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 121
YG +KK +L+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+DFD R+
Sbjct: 216 YGFEKK-------SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 268
Query: 122 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSV 181
V+ FK+ DL +K+AL+RL A E+AK LSS TQ SI + + D
Sbjct: 269 VDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATAD---GP 325
Query: 182 TRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 241
++TRA+FEEL +DL PVE +LRDAK+ I +++LVGGSTRIP VQ+L
Sbjct: 326 KHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQEL- 384
Query: 242 QDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301
V+KL GK+ N ++NPDE VA GAAVQA
Sbjct: 385 ---------------------------VKKL-----TGKDPNVTVNPDEVVALGAAVQAG 412
Query: 302 ILHGDKSEEVQDLLLLDVTP 321
+L G EV D++LLDVTP
Sbjct: 413 VLAG----EVSDIVLLDVTP 428
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 296 bits (761), Expect = 2e-95
Identities = 123/320 (38%), Positives = 178/320 (55%), Gaps = 59/320 (18%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
+L +++ AE LG + AVITVPAYF+D+QRQATKD+ +AGLNVLR++NEPTAAAIA
Sbjct: 133 ILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIA 192
Query: 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 121
YGLD G E + ++DLGGGTFD+SIL + G+FEV +T GD+ LGG+DFD+ +
Sbjct: 193 YGLDS--GQ-----EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLL 245
Query: 122 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSV 181
+ ++ + L + R L A AK LS + + SV
Sbjct: 246 ADWILE--QAGLSPRLDPEDQ--RLLLDAARAAKEALSDADSVEV-------------SV 288
Query: 182 TRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 241
+ +TR +F L A L + T+ ++LRDA ++ ++ ++V+VGGSTR+P V++ +
Sbjct: 289 ALWQGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAV 348
Query: 242 QDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301
+FF G+ SI+PD+ VA GAA+QA
Sbjct: 349 GEFF---------------------------------GRTPLTSIDPDKVVAIGAAIQAD 375
Query: 302 ILHGDKSEEVQDLLLLDVTP 321
IL G+K + D+LLLDV P
Sbjct: 376 ILAGNKPDS--DMLLLDVIP 393
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 277 bits (710), Expect = 1e-90
Identities = 124/303 (40%), Positives = 169/303 (55%), Gaps = 41/303 (13%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M+LTK+KE AE L V++ VI+VP+YF D+QR+A D+ IAGLN LR++NE TA A+
Sbjct: 119 MLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATAL 178
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYG+ K RNV D+G + VSI+ G +V STA D +LGG DFD
Sbjct: 179 AYGIYKTDLPEEEKP-RNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRDFDEA 237
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+ HF +EFK KYK D+ +N +A RL ACE+ K+ LS++T+A + I+ L E D
Sbjct: 238 LFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLMEDKDV--- 294
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
+ R FEEL A L EP+EK+L +A + K IH + +VGGSTRIP V++L
Sbjct: 295 ----SGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKEL 350
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
+ F GKEL+ ++N DEAVA G A+Q
Sbjct: 351 IAKVF---------------------------------GKELSTTLNADEAVARGCALQC 377
Query: 301 AIL 303
A+L
Sbjct: 378 AML 380
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 276 bits (707), Expect = 2e-90
Identities = 117/299 (39%), Positives = 157/299 (52%), Gaps = 57/299 (19%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
+L +KE AE LG + AVITVPAYF+D+QRQATKD+ +AGLNVLR++NEPTAAA+A
Sbjct: 113 ILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALA 172
Query: 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 121
YGLDKK E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD +
Sbjct: 173 YGLDKKK-------EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLL 225
Query: 122 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSV 181
+ +KY + L +AK LS + + +
Sbjct: 226 AELLL----KKYGLKSLISDEDQAELLLIARKAKEALSGAEEVEVRGQDF---------- 271
Query: 182 TRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 241
+ ++TR FE+L L + T+ +++LRDA + I ++LVGGSTRIP VQ+ +
Sbjct: 272 ---KCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAV 328
Query: 242 QDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
FF K L INPDE VA GAA+QA
Sbjct: 329 SKFFGQKPLC---------------------------------DINPDEVVAIGAALQA 354
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 273 bits (700), Expect = 2e-86
Identities = 130/323 (40%), Positives = 177/323 (54%), Gaps = 61/323 (18%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
+L K+K+ AE LG + AVITVPAYF+D+QRQATKD+ +AGLNVLR++NEPTAAA+A
Sbjct: 113 ILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVA 172
Query: 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 121
YGLDK + E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD+ +
Sbjct: 173 YGLDK-------ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHAL 225
Query: 122 VNHFVQEFKRKYKK---DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFY 178
K+ N R L A AK L + S+E+D +G DF
Sbjct: 226 AKWI-------LKQLGISADLNPEDQRLLLQAARAAKEAL--TDAESVEVDFTLDGKDF- 275
Query: 179 TSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 238
+ +TR FE L L + T+ ++LRDA + +I +VLVGGSTR+P V+
Sbjct: 276 ------KGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVR 329
Query: 239 KLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAV 298
+ + + F G+E I+PD+ VA GAA+
Sbjct: 330 RAVAELF---------------------------------GQEPLTDIDPDQVVALGAAI 356
Query: 299 QAAILHGDKSEEVQDLLLLDVTP 321
QA +L G++ DLLLLDVTP
Sbjct: 357 QADLLAGNRIGN--DLLLLDVTP 377
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 265 bits (679), Expect = 4e-83
Identities = 150/375 (40%), Positives = 217/375 (57%), Gaps = 63/375 (16%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
VL KMKETAE +LG VSNAV+T PAYFND+QRQATKD+GTIAGLNV+R++NEPTAAA+A
Sbjct: 144 VLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALA 203
Query: 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 121
YG+DK S + ++DLGGGTFD+S+L I G+FEVK+T GDTHLGGEDFD +
Sbjct: 204 YGMDKTKDSL-------IAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLAL 256
Query: 122 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSV 181
++ ++EF++ DL+ + AL+R+R A E+AK LSS+ + + + + D
Sbjct: 257 SDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANAD---GA 313
Query: 182 TRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 241
++ ++R++FE + L ++ P ++ ++DA ++ +I+D+VLVGG TR+PKV + +
Sbjct: 314 QHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEV 373
Query: 242 QDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 301
+ FF K+ + +NPDEAVA GAA
Sbjct: 374 KKFF---------------------------------QKDPFRGVNPDEAVALGAATLGG 400
Query: 302 ILHGDKSEEVQDLLLLDVTPQLAWRSFKNDSYGVDIDTIMNNLAIKIPLQQVKNTVEELI 361
+L GD V+ L+LLDVTP + I+T+ IP KNT
Sbjct: 401 VLRGD----VKGLVLLDVTP-----------LSLGIETLGGVFTRMIP----KNTTIP-T 440
Query: 362 NEGHIYTTIDDNHYQ 376
+ ++T DN Q
Sbjct: 441 KKSQTFSTAADNQTQ 455
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 254 bits (651), Expect = 7e-82
Identities = 121/301 (40%), Positives = 179/301 (59%), Gaps = 43/301 (14%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
++ KMKE A++ LG + VITVP YF++ Q+ A +++ AG NVLRII+EP+AAA+
Sbjct: 118 LIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAAL 177
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYG+ G + +G+ VL++ LGG + DV+IL + G++ V +T+ D +LGGE F
Sbjct: 178 AYGI----GQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTET 233
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+ + EFKRK+K+D+ N RA+ +L A E AK+ LS+ A+ ++SL+EG+DF
Sbjct: 234 LSQYLANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDF--- 290
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
+ SV+RARFE L + LF +EP+EK L A + K I+ +VL GGS+RIPK+Q+L
Sbjct: 291 ----QCSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQL 346
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
++D F E+ LN SI+PDE +A GAA QA
Sbjct: 347 IKDLFPSVEV-------------------------------LN-SISPDEVIAIGAAKQA 374
Query: 301 A 301
Sbjct: 375 G 375
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 244 bits (624), Expect = 2e-77
Identities = 123/306 (40%), Positives = 175/306 (57%), Gaps = 46/306 (15%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
++ K+++ AE YLG V AVI+VPA F++ QR AT + +AGL VLR+INEPTAAA+A
Sbjct: 142 LILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALA 201
Query: 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 121
YGL KK NVL+ DLGGGT DVS+L + G+F ++ AG+ LGG+DF+ R+
Sbjct: 202 YGLHKKQDVF------NVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRL 255
Query: 122 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK--RTLSSSTQASIEIDSLFEGVDFYT 179
+ + Q+ KY K NK ++RLR A E AK TL ST S+ + L EG
Sbjct: 256 LQYLYQKIYEKYGKVP-DNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEG----E 310
Query: 180 SVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 239
S+ + +TR FE LN DLF+ + P+E L + +DK ++ +IVLVGGSTRIP++++
Sbjct: 311 SIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQ 370
Query: 240 LLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299
++ FF GK+ N S++P+ AV G A+Q
Sbjct: 371 VIGRFF---------------------------------GKDPNTSVDPELAVVTGVAIQ 397
Query: 300 AAILHG 305
A I+ G
Sbjct: 398 AGIIGG 403
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 232 bits (594), Expect = 3e-73
Identities = 107/314 (34%), Positives = 161/314 (51%), Gaps = 55/314 (17%)
Query: 1 MVLTKMKETAEAYLG-KTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 59
M+L K+ AE + V + VITVP YF +QRQA D+ +AGLNVL ++N+ TAAA
Sbjct: 117 MILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAA 176
Query: 60 IAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI----------EDGIFEVKSTAGD 109
+ Y LD++ + + VL +D+G G+ +++ EV D
Sbjct: 177 LNYALDRRF---ENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWD 233
Query: 110 THLGGEDFDNRMVNHFVQEFKRKYK--KDLTTNKRALRRLRTACERAKRTLSSSTQASIE 167
LGG +FD R+ +H +EF+ K+K D+ TN RA+ +L RAK LS++++A +
Sbjct: 234 RTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVS 293
Query: 168 IDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVL 227
I+SL++ +DF + +TRA FEEL ADLF + P++K+L A + I + L
Sbjct: 294 IESLYDDIDF-------KTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVEL 346
Query: 228 VGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSIN 287
+GG+TR+PK VQ+ L + K+L K +N
Sbjct: 347 IGGATRVPK--------------------------------VQEELSEAVGKKKLGKHLN 374
Query: 288 PDEAVAYGAAVQAA 301
DEA A GAA AA
Sbjct: 375 ADEAAAMGAAYYAA 388
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 228 bits (582), Expect = 2e-71
Identities = 107/301 (35%), Positives = 166/301 (55%), Gaps = 34/301 (11%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
L ++KE AE +LGK V+ AV++VP +F+D Q +A + AGL VL++I EP AA +
Sbjct: 120 RFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALL 179
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AY + + + +RNV++ D GG DVS++ + G++ + +TA D LGG+ D+
Sbjct: 180 AYDAGEP--TEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDA 237
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+V HF +EF +K K D TN RAL +LR E K+TLS+ST A+ ++SL EG+DF++
Sbjct: 238 LVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFHS- 296
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
S+ R RFE L + +FR V ++ A +D I +++LVGG+ PK+
Sbjct: 297 ------SINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASN 350
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
L F P+ TT+ + K+++P E VA G A+QA
Sbjct: 351 LSYLF----------PETTTITAPITVS---------------KALDPSELVARGCAIQA 385
Query: 301 A 301
+
Sbjct: 386 S 386
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 204 bits (519), Expect = 3e-62
Identities = 109/304 (35%), Positives = 166/304 (54%), Gaps = 41/304 (13%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M+LTK+KETAE+ L K V + V++VP ++ D++R++ D+ IAGLN LR++NE TA A+
Sbjct: 119 MLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVAL 178
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYG+ K+ A RNV+ D+G + VS+ G +V +TA DT LGG FD
Sbjct: 179 AYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEV 238
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYT 179
+VN+F +EF +KYK D+ + RAL RL CE+ K+ +S+ ++ + I+ +D
Sbjct: 239 LVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSG 298
Query: 180 SVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 239
++ R +F E+ DL P+ L AK+ K I+ + +VGG+TRIP V++
Sbjct: 299 -------TMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKE 351
Query: 240 LLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299
+ FF GKE++ ++N DEAVA G A+Q
Sbjct: 352 KISKFF---------------------------------GKEVSTTLNADEAVARGCALQ 378
Query: 300 AAIL 303
AIL
Sbjct: 379 CAIL 382
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 200 bits (509), Expect = 9e-61
Identities = 95/301 (31%), Positives = 148/301 (49%), Gaps = 40/301 (13%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M + K+K+T + +++ I VP ++ + QR D+ IAGLN +RI+N+ TAA +
Sbjct: 117 MFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGV 176
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
+YG+ K R V D+G ++ SI+ + G +V TA D H GG DFD
Sbjct: 177 SYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLA 236
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+ HF EFK KYK D+ N +A R+ TA E+ K+ LS++T A ++S+ VD
Sbjct: 237 ITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDV--- 293
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
++R EEL L EPV K+L AK+ ++ + ++GG+TRIP +++
Sbjct: 294 ----SSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQS 349
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
+ + F GK L+ ++N DEA+A GAA
Sbjct: 350 ISEAF---------------------------------GKPLSTTLNQDEAIAKGAAFIC 376
Query: 301 A 301
A
Sbjct: 377 A 377
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 190 bits (483), Expect = 6e-57
Identities = 108/304 (35%), Positives = 161/304 (52%), Gaps = 41/304 (13%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M+LTK+KETAE L K V++ VI+VP++F D++R++ D+ I GLN LR++N+ TA A+
Sbjct: 119 MLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVAL 178
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
YG+ K+ + R V+ D+G F VS G +V TA D LGG++FD +
Sbjct: 179 NYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEK 238
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYT 179
+V HF EFK KYK D + RAL RL CE+ K+ +SS ST + I+ D
Sbjct: 239 LVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKD--- 295
Query: 180 SVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 239
+++ R++FEEL ADL + P+ L + + + +VGG+TRIP V++
Sbjct: 296 --VSGKMN--RSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKE 351
Query: 240 LLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299
+ FF GK+++ ++N DEAVA G A+Q
Sbjct: 352 RIAKFF---------------------------------GKDVSTTLNADEAVARGCALQ 378
Query: 300 AAIL 303
AIL
Sbjct: 379 CAIL 382
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 182 bits (462), Expect = 7e-54
Identities = 102/304 (33%), Positives = 165/304 (54%), Gaps = 41/304 (13%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M+L K+KET+E L K V++ VI++P++F D++R++ + +AGLN LR++NE TA A+
Sbjct: 119 MLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVAL 178
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYG+ K+ A RNV+ D+G + VS+ G +V +T D +LGG +FD
Sbjct: 179 AYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEA 238
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYT 179
+V++F EFK KYK ++ N RAL RL CE+ K+ +S+ ++ + I+ +D +
Sbjct: 239 LVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSS 298
Query: 180 SVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 239
+ RA+FE+L A L P++ + A + + I+ I +VGG+TRIP V++
Sbjct: 299 -------KMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKE 351
Query: 240 LLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 299
+ FF K+++ ++N DEAVA G A+Q
Sbjct: 352 QITSFFL---------------------------------KDISTTLNADEAVARGCALQ 378
Query: 300 AAIL 303
AIL
Sbjct: 379 CAIL 382
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 160 bits (407), Expect = 4e-44
Identities = 105/321 (32%), Positives = 151/321 (47%), Gaps = 75/321 (23%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
+ +K AE L ++ AVITVPA+FND+ R + IAG VLR+I EPTAAA A
Sbjct: 125 IFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYA 184
Query: 62 YGLDKKVGSAAGSGERNV-LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
YGL+K ++ L++DLGGGTFDVSIL I++GIF+V +T GD LGG D D
Sbjct: 185 YGLNK--------NQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVV 236
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+ + +F DL + L+ ++AK TL+ D + +
Sbjct: 237 ITQYLCNKF------DLPNSIDTLQ----LAKKAKETLTYK--------------DSFNN 272
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
+S+ + E+L L T+ ++ L A I ++LVGG+TRIP ++
Sbjct: 273 ---DNISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDE 327
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
L F V +L D I+PD+AV +GAA+QA
Sbjct: 328 LYKAFK----------------------VD-ILSD----------IDPDKAVVWGAALQA 354
Query: 301 AILHGDKSEEVQDLLLLDVTP 321
L + LL+DV P
Sbjct: 355 ENL----IAPHTNSLLIDVVP 371
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 94.5 bits (236), Expect = 2e-21
Identities = 77/310 (24%), Positives = 105/310 (33%), Gaps = 81/310 (26%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQ----RQATKDSGTI---AGLNVLRIIN 53
L ++K+ AEA LG + VI P +F QA AG +
Sbjct: 99 RFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQY 158
Query: 54 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT--- 110
EP AAA+ Y + E VL+ D+GGGT D S++ + D
Sbjct: 159 EPIAAALDYE-------QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAH 211
Query: 111 ---HLGGEDFDNRMVNHFV----------QEFK------RKYKKDLTT------------ 139
+GG DFD R+ H V + Y DL T
Sbjct: 212 SGVRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKT 271
Query: 140 ------------NKRALRRLRT------------ACERAKRTLSSSTQASIEIDSLFEGV 175
L RL T A E AK LSS + I++D F V
Sbjct: 272 LRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLD--FVEV 329
Query: 176 DFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 235
VTRA FE A V+++L A + I + L GGS+ +P
Sbjct: 330 GL-------EAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVP 382
Query: 236 KVQKLLQDFF 245
V++ F
Sbjct: 383 AVRQAFAARF 392
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 73.9 bits (182), Expect = 2e-14
Identities = 64/282 (22%), Positives = 105/282 (37%), Gaps = 58/282 (20%)
Query: 3 LTKMKETAEAYLGKTVSNA---------VITVPAYFNDSQRQATKDSGTIAGLNV----- 48
L + E A L KT N V+TVPA ++D+ +QA +++ AGL
Sbjct: 116 LRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGP 175
Query: 49 --LRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGI-FEVK- 104
L I+ EP AAA+ + G+ L+ D GGGT D+++ + +K
Sbjct: 176 DRLLIVLEPEAAALYCLKLLLISLNLKPGDG-FLVCDAGGGTVDLTVYEVTSVEPLRLKE 234
Query: 105 STAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT----NKRALRRLRTACERAKRTLSS 160
AG L G F +R F + K + + + L E KR+
Sbjct: 235 LAAGSGGLCGSTFVDR---AFEELLKERLGELFYELPSKSPALWLILMRFFETIKRS--- 288
Query: 161 STQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELN-------------ADLFRGTMEP 207
F G D T++ + E LF +E
Sbjct: 289 -----------FGGTDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEE 337
Query: 208 VEKSLRDAKMDKAQIHD----IVLVGGSTRIPKVQKLLQDFF 245
+ + + ++++A+ D I LVGG P ++ L++ F
Sbjct: 338 IIDLIEE-QLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERF 378
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 62.8 bits (154), Expect = 5e-11
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 51/236 (21%)
Query: 22 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81
VI VP+ + +R+A D+ AG + +I EP AAAI GLD + G+ ++
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD--IFEPKGN-----MV 146
Query: 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNK 141
D+GGGT +++++++ GI KS +GG+DFD ++ + +RKY
Sbjct: 147 VDIGGGTTEIAVISL-GGIVVSKS----IRVGGDDFDEAIIRY----VRRKYN------- 190
Query: 142 RALRRL----RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELN 197
L RTA E K + S+ E +G D T + R + VT +
Sbjct: 191 -----LLIGERTA-EEIKIEIGSAYPLDEEETMEVKGRDLVTGLPR-TVEVT-------S 236
Query: 198 ADLFRGTMEPVEKSLRDAK--MDK------AQIHD--IVLVGGSTRIPKVQKLLQD 243
++ EP+++ + K ++K A I D IVL GG + + +L+ +
Sbjct: 237 EEVREALKEPLDEIVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISE 292
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 57.8 bits (140), Expect = 2e-09
Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 30/226 (13%)
Query: 22 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81
VI VP+ +R+A K+S AG + +I EP AAAI GL V GS ++
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL--PVEEPTGS-----MV 154
Query: 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNK 141
D+GGGT +V+++++ GI +S +GG++FD ++N+ +R Y
Sbjct: 155 VDIGGGTTEVAVISL-GGIVVSRS----IRVGGDEFDEAIINY----IRRTYN------- 198
Query: 142 RALRRLRTACERAKRTLSSSTQASIEIDSL-FEGVDFYTSVTRARLSVTRARFEELNADL 200
L +TA ER K + S+ + E + G D T + R + E L +
Sbjct: 199 -LLIGEQTA-ERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREAL-QEP 255
Query: 201 FRGTMEPVEKSLRDAKMD-KAQIHD--IVLVGGSTRIPKVQKLLQD 243
+E V+++L + A I + IVL GG + + KLL
Sbjct: 256 VNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSK 301
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 57.5 bits (140), Expect = 3e-09
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 55/240 (22%)
Query: 20 NAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNV 79
VI VP+ + +R+A +++ AG + +I EP AAAI GL V G+
Sbjct: 102 RIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--VTEPVGN----- 154
Query: 80 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT 139
++ D+GGGT +V+++++ GI +S + G++ D +V + +RKY
Sbjct: 155 MVVDIGGGTTEVAVISL-GGIVYSESIR----VAGDEMDEAIVQY----VRRKYN----- 200
Query: 140 NKRALRRL----RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVT-RARFE 194
L RTA E K IEI S + + + R R VT +
Sbjct: 201 -------LLIGERTA-EEIK----------IEIGSAYPLDEEESMEVRGRDLVTGLPKTI 242
Query: 195 ELNADLFRGTMEP--------VEKSLRDAKMDKAQ-IHD--IVLVGGSTRIPKVQKLLQD 243
E++++ R + V+ L + A I D IVL GG + + KLL +
Sbjct: 243 EISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSE 302
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 55.3 bits (134), Expect = 2e-08
Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 47/237 (19%)
Query: 19 SNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN 78
VI VP+ + +R+A K++ AG + +I EP AAAI GL V G+
Sbjct: 94 PRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGLP--VEEPTGN---- 147
Query: 79 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 138
++ D+GGGT +V+++++ GI KS + G++ D ++ + ++KY
Sbjct: 148 -MVVDIGGGTTEVAVISL-GGIVTSKS----VRVAGDEMDEAIIKY----IRKKYN---- 193
Query: 139 TNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRAR---------LSVT 189
L RTA ER K IEI S + + R R + ++
Sbjct: 194 ----LLIGERTA-ERIK----------IEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEIS 238
Query: 190 RARFEELNADLFRGTMEPVEKSLRDAKMD-KAQIHD--IVLVGGSTRIPKVQKLLQD 243
E + +E V++ L + A I D IVL GG + + KLL D
Sbjct: 239 SEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALLRGLDKLLSD 295
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 53.2 bits (128), Expect = 4e-08
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
++ ++K+T E LG +++A +P + + + AG+ VL +++EPTAAA
Sbjct: 45 IVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAV 104
Query: 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 112
+ N + D+GGGT +SIL I+ G TH+
Sbjct: 105 LQIK------------NGAVVDVGGGTTGISILKKGKVIYSADEPTGGTHM 143
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 52.2 bits (125), Expect = 1e-07
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 61
++ ++K+T E LG ++A +P + + + AGL VL +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 62 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 112
LD + + D+GGGT +SI+ I+ G TH+
Sbjct: 137 LQLD------------DGGVVDIGGGTTGISIVKKGKVIYSADEPTGGTHM 175
>gnl|CDD|220015 pfam08784, RPA_C, Replication protein A C terminal. This domain
corresponds to the C terminal of the single stranded DNA
binding protein RPA (replication protein A). RPA is
involved in many DNA metabolic pathways including DNA
replication, DNA repair, recombination, cell cycle and
DNA damage checkpoints.
Length = 103
Score = 48.5 bits (116), Expect = 2e-07
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 334 GVDIDTIMNNLAIKIPLQQVKNTVEELINEGHIYTTIDDN 373
GV +D + L +P+ ++ V+ L NEGHIY+TIDD+
Sbjct: 65 GVHVDELAAQLN-GLPVNDIRQAVDFLSNEGHIYSTIDDD 103
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 50.7 bits (122), Expect = 5e-07
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 16/113 (14%)
Query: 22 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81
+I +P +++A +++ AG + +I EP AAAI GLD + +G+ ++
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGN-----MV 151
Query: 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 134
D+GGGT D+++L++ GI S + G+ FD ++ + ++KYK
Sbjct: 152 VDIGGGTTDIAVLSLG-GIVTSSS----IKVAGDKFDEAIIRY----IRKKYK 195
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 48.4 bits (115), Expect = 9e-07
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGT----------IAGLNVLR 50
L ++ + A L + IT P R+ G +
Sbjct: 45 EALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVA 104
Query: 51 IINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 107
++N+ AAA+A GL K E VL+ DLG GT ++I +EDG V +
Sbjct: 105 VVNDAVAAALAEGLFGK-------EEDTVLVVDLGTGTTGIAI--VEDGKGGVGAAG 152
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 47.5 bits (114), Expect = 3e-06
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 36/123 (29%)
Query: 2 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQAT--KDSGTI------AGLNVLRIIN 53
++ ++K T E LG+ +++A +P T D I AGL V +++
Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVLD 123
Query: 54 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA----GD 109
EPTAAA G+D + D+GGGT +SIL +DG +V +A G
Sbjct: 124 EPTAAAAVLGIDNGA------------VVDIGGGTTGISIL--KDG--KVVYSADEPTGG 167
Query: 110 THL 112
TH+
Sbjct: 168 THM 170
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 46.8 bits (112), Expect = 8e-06
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 16/113 (14%)
Query: 22 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81
VI VP+ D +R+A K++ AG + +I EP AAAI GL + GS ++
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP--IMEPTGS-----MV 157
Query: 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 134
D+GGGT +V+++++ GI V S++ +GG+ D ++ ++KY
Sbjct: 158 VDIGGGTTEVAVISL-GGI--VSSSS--VRVGGDKMDEAIIV----YVRKKYN 201
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 46.8 bits (112), Expect = 1e-05
Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 48/209 (22%)
Query: 44 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGER--NVLIFDLGGGTFDVSILTIEDGIF 101
AGL V I+ EP A+A+A E+ V + D+GGGT D++I +
Sbjct: 177 AGLKVDNIVLEPLASALA---------VLTEDEKELGVALIDIGGGTTDIAIYK-NGALR 226
Query: 102 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 161
+GG +H ++ + K ER K S+
Sbjct: 227 YTGVIP----VGG--------DHVTKDIAKGLKTPFEE-----------AERIKIKYGSA 263
Query: 162 TQASIEIDSLFE----GVDFYTSVTRARLS-VTRARFEELNADLFRGTMEPVEKSLRDAK 216
+ + + E G D VTR+ LS + AR EE +E V+ LR +
Sbjct: 264 LISLADDEETIEVPSVGSDIPRQVTRSELSEIIEARVEE--------ILELVKAELRKSG 315
Query: 217 MDKAQIHDIVLVGGSTRIPKVQKLLQDFF 245
+ +VL GG ++P + +L + F
Sbjct: 316 LPNHLPGGVVLTGGGAQLPGIVELAERIF 344
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 45.9 bits (110), Expect = 2e-05
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 16/112 (14%)
Query: 22 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81
VI VP+ + +R+A ++S AG + +I EP AAAI GL V GS ++
Sbjct: 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLP--VTEPTGS-----MV 152
Query: 82 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 133
D+GGGT +V+++++ GI KS +GG+ FD ++N+ +R Y
Sbjct: 153 VDIGGGTTEVAVISL-GGIVYSKS----VRVGGDKFDEAIINY----VRRNY 195
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 43.8 bits (104), Expect = 1e-04
Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 39/116 (33%)
Query: 198 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 252
ADL R +E V +LRD+ + I I L+GG + P +++L D F
Sbjct: 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFG------ 415
Query: 253 SINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKS 308
PV +E A GAA+ AA G+K
Sbjct: 416 --------------TPVDVP--------------EGEEGPALGAAILAAWALGEKD 443
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 40.7 bits (95), Expect = 0.001
Identities = 71/326 (21%), Positives = 128/326 (39%), Gaps = 90/326 (27%)
Query: 3 LTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGL------NVLRIINEPT 56
L ++K+ + + L K V+TVPA + +Q +++ +AGL L I EP
Sbjct: 125 LQELKDQSPSLLEKNEVRWVLTVPAIWKQPAKQFMREAAYLAGLVSPENPEQLLIALEPE 184
Query: 57 AAAI---------------------AYGLDKKVGSA--------------------AGSG 75
AA+I + + S+ +G+G
Sbjct: 185 AASIYCRKLRLHQLTDLSQRAVTNFDIDGSRSIDSSFRQAREQLRRSRHSRTFLVESGTG 244
Query: 76 E--------RNVLIFDLGGGTFDVSILTIED--GIFE--VKSTAGDTHLGGED--FDNRM 121
E ++ D GGGT D+++ IE G + K++ G G D F+ +
Sbjct: 245 ELWSEMQAGDRYIVADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETML 304
Query: 122 VNHFVQEFKRKYKKDLTTNKR--ALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFY- 178
F ++F +K KR A L A E KRT + ++ I F +DFY
Sbjct: 305 CQIFGEDFIDTFKA-----KRPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYR 359
Query: 179 --------TSVTRARLS--------VTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQI 222
T++ ++ ++ + R E +N +LF+ T+ + + + + M K ++
Sbjct: 360 KHRGQNVETALRKSSVNFVKWSSQGMLRMSTEAMN-ELFQPTINNIIQHI-ENLMQKPEV 417
Query: 223 HDI---VLVGGSTRIPKVQKLLQDFF 245
+ LVGG P +Q+ +Q+
Sbjct: 418 KGVKFLFLVGGFAESPMLQRAVQNAL 443
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 40.3 bits (94), Expect = 0.001
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 20 NAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNV 79
N V+ P+ +R+A D+ G + +I EP AAAI G D V NV
Sbjct: 100 NVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI--GADLPVDEPVA----NV 153
Query: 80 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 129
++ D+GGGT +V+I++ G+ S +GG+ D +V+ +++
Sbjct: 154 VV-DIGGGTTEVAIISF-GGVVSCHS----IRIGGDQLDEDIVSFVRKKY 197
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 40.2 bits (95), Expect = 0.001
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 7 KETAEAYLGKTVSNAVITVPAYFN-----DSQRQAT---KDSGTIAGLNVLRIINEPTAA 58
K+ AEA L ++ AVI P F ++ RQA + + AG + EP AA
Sbjct: 138 KQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAA 197
Query: 59 AIAY--GLDKKVGSAAGSGERNVLIFDLGGGTFDVSIL 94
+ + L + E+ VL+ D+GGGT D S+L
Sbjct: 198 GLDFEATLTE---------EKRVLVVDIGGGTTDCSML 226
>gnl|CDD|227560 COG5235, RFA2, Single-stranded DNA-binding replication protein A
(RPA), medium (30 kD) subunit [DNA replication,
recombination, and repair].
Length = 258
Score = 37.3 bits (86), Expect = 0.008
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 331 DSYGVDIDTIMNNLAIKIPLQQVKNTVEELINEGHIYTTIDDNHYQTV 378
D G+ I+ ++ L+ + + ++ L+ +GHIY T+D N ++T
Sbjct: 210 DENGLHINVVIKMLSQSYSEDETRVNIDVLLRDGHIYPTVDGNEFKTT 257
>gnl|CDD|216816 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 35.3 bits (82), Expect = 0.034
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 69 GSAAG--------SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 107
G AAG +G +N ++ D+GG + DVS I DG E+ S
Sbjct: 61 GPAAGVVGAAYTLAGLKNAIVVDMGGTSTDVS--LIIDGEPEISSEG 105
>gnl|CDD|233300 TIGR01174, ftsA, cell division protein FtsA. This bacterial cell
division protein interacts with FtsZ, the bacterial
homolog of tubulin. It is an ATP-binding protein and
shows structural similarities to actin and heat shock
cognate protein 70 [Cellular processes, Cell division].
Length = 371
Score = 35.7 bits (83), Expect = 0.036
Identities = 56/213 (26%), Positives = 87/213 (40%), Gaps = 53/213 (24%)
Query: 44 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN--VLIFDLGGGTFDVSILTIEDGIF 101
GL V I+ A+AIA L + E+ V + D+GGGT D+++ T I
Sbjct: 170 CGLEVDNIVLSGLASAIAV-LTED--------EKELGVCLIDIGGGTTDIAVYT-GGSIR 219
Query: 102 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 161
K +GG NH KD+ +ALR ER K +
Sbjct: 220 YTKVIP----IGG--------NHIT--------KDIA---KALRTPLEEAERIKIKYGCA 256
Query: 162 TQA------SIEIDSLFEGVDFYTSVTRARLS-VTRARFEELNADLFRGTMEPV-EKSLR 213
+ +IEI S+ G S++R L+ + AR EE+ +E V +K LR
Sbjct: 257 SIPLEGPDENIEIPSV--GERPPRSLSRKELAEIIEARAEEI--------LEIVKQKELR 306
Query: 214 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246
+ + IVL GG ++ + +L + F+
Sbjct: 307 KSGFKEELNGGIVLTGGGAQLEGIVELAEKVFD 339
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar
proteins. ParM is a plasmid-encoded bacterial homolog
of actin, which polymerizes into filaments similar to
F-actin, and plays a vital role in plasmid segregation.
ParM filaments segregate plasmids paired at midcell into
the individual daughter cells. This subfamily also
contains Thermoplasma acidophilum Ta0583, an active
ATPase at physiological temperatures, which has a
propensity to form filaments.
Length = 312
Score = 35.5 bits (82), Expect = 0.039
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 50 RIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 109
++ E A LD+ VL+ D+GGGT D ++ ++G S+
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDK----KVLVIDIGGGTTD--VVVFDNGKPVESSS--G 195
Query: 110 THLGGEDFDNRMVNHFVQEFKRKYKKDLT 138
+ G + + +E ++Y DL+
Sbjct: 196 SLELG---VSDLYEAIAKELNKEYGIDLS 221
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 35.4 bits (82), Expect = 0.044
Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 42/131 (32%)
Query: 198 ADLFRGTMEPVEKSLRDAKMDK-----AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 252
A+L R +E LR +D + +I L+GG + P ++++ D N
Sbjct: 367 ANLARAAVEGATFGLRYG-LDLLRALGLKSTEIRLIGGGAKSPAWRQIIADIMNA----- 420
Query: 253 SINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQ 312
V + EA A GAA+QAA E+
Sbjct: 421 ---------------EVVVPDTE--------------EAAALGAAIQAAWCL--TGEDGA 449
Query: 313 DLLLLDVTPQL 323
D+ L ++ +L
Sbjct: 450 DVALAELCDEL 460
>gnl|CDD|117872 pfam09330, Lact-deh-memb, D-lactate dehydrogenase, membrane
binding. Members of this family are predominantly found
in prokaryotic D-lactate dehydrogenase, forming the
cap-membrane-binding domain, which consists of a large
seven-stranded antiparallel beta-sheet flanked on both
sides by alpha-helices. They allow for membrane
association.
Length = 291
Score = 32.6 bits (75), Expect = 0.30
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 266 AQPVQKLLQDFFNGKELNKSI--NPDEA--------VAYGAAVQAAILHGDKSEEVQDLL 315
+ +K L+++F E P+E A GAA++ +H +EV+D++
Sbjct: 124 IEEARKYLKEYFADAEDGDYFECTPEEGKKAFLHRFAAAGAAIRYRAVH---RDEVEDIV 180
Query: 316 LLDV 319
LD+
Sbjct: 181 ALDI 184
>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like
D-xylulose kinases; a subgroup of the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial D-xylulose kinases (XK, also known
as xylulokinase; EC 2.7.1.17), which catalyze the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. D-xylulose has been used as a source of carbon
and energy by a variety of microorganisms. Some
uncharacterized sequences are also included in this
subgroup. The prototypical member of this CD is
Escherichia coli xylulokinase (EcXK), which exists as a
dimer. Each monomer consists of two large domains
separated by an open cleft that forms an active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The presence of Mg2+ or Mn2+
is required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 482
Score = 31.7 bits (73), Expect = 0.60
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 198 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246
A L R +E V SLRD+ + I I+ +GG R P ++ D
Sbjct: 364 AHLTRAVLEGVAFSLRDSLEILRELGVPIDRIIAIGGGARSPLWLQIQADVLG 416
>gnl|CDD|223223 COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 674
Score = 32.0 bits (73), Expect = 0.66
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 68 VGSAAGSGER--NVLIFDLGGGTFDVSILTIEDGIFEVKSTA 107
VG+A +G + N ++FD+GG + DV+ I DG E+ S
Sbjct: 267 VGAAYLTGLKAGNAIVFDMGGTSTDVA--LIIDGEPEISSET 306
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 30.6 bits (69), Expect = 1.6
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 282 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 320
L +S+N DEA+ Y AV A + D++E +D L LD T
Sbjct: 901 LMRSLN-DEAIRYATAVLAWLEVVDEAERAEDELGLDGT 938
>gnl|CDD|203682 pfam07558, Shugoshin_N, Shugoshin N-terminal coiled-coil region.
The Shugoshin protein is found to have this conserved
N-terminal coiled-coil region and a highly conserved
C-terminal basic region, family Shugoshin_C pfam07557.
Shugoshin is a crucial target of Bub1 kinase function at
kinetochores, necessary for both meiotic and mitotic
localisation of shugoshin to the kinetochore. Human
shugoshin is diffusible and mediates kinetochore-driven
formation of kinetochore-microtubules during bipolar
spindle assembly. Further, the primary role of shugoshin
is to ensure bipolar attachment of kinetochores, and its
role in protecting cohesion has co-developed to
facilitate this process.
Length = 46
Score = 26.7 bits (60), Expect = 3.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 342 NNLAIKIPLQQVKNTVEELINE 363
NN A+ I + +++ V +L+NE
Sbjct: 15 NNSALSIKISELEKEVSKLLNE 36
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 29.3 bits (66), Expect = 3.8
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 198 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246
A L R +E V +L D ++ + +VGG R P ++L D
Sbjct: 373 AHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADALG 426
>gnl|CDD|219010 pfam06406, StbA, StbA protein. This family consists of several
bacterial StbA plasmid stability proteins.
Length = 318
Score = 28.9 bits (65), Expect = 4.2
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 39 DSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE- 97
DS TI ++V+ P + + + K + S LI DLGG T DV+ + +
Sbjct: 136 DSFTIRSVSVM-----PESLPAGFSVLKDLDSFESL-----LIVDLGGTTLDVAHVRGQL 185
Query: 98 DGIFEVKSTAGDTHLG 113
+GI ++ GD+ +G
Sbjct: 186 EGISKIH---GDSRIG 198
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 28.6 bits (64), Expect = 4.2
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 18/68 (26%)
Query: 328 FKNDSYGVDIDTIMNNLAIKIPLQQV----------KNTVEELIN------EGHIYTTID 371
FK SY I+ ++++K + K+T+ +LIN EG I ID
Sbjct: 6 FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL--ID 63
Query: 372 DNHYQTVD 379
+T+D
Sbjct: 64 GVDIKTID 71
>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases. This family is
predominantly composed of glycerol kinase (GK) and
similar carbohydrate kinases including rhamnulokinase
(RhuK), xylulokinase (XK), gluconokinase (GntK),
ribulokinase (RBK), and fuculokinase (FK). These enzymes
catalyze the transfer of a phosphate group, usually from
ATP, to their carbohydrate substrates. The monomer of
FGGY proteins contains two large domains, which are
separated by a deep cleft that forms the active site.
One domain is primarily involved in sugar substrate
binding, and the other is mainly responsible for ATP
binding. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Substrate-induced conformational changes and a divalent
cation may be required for the catalytic activity.
Length = 435
Score = 28.4 bits (64), Expect = 6.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 198 ADLFRGTMEPVEKSLRDAKMD-----KAQIHDIVLVGGSTRIPKVQKLLQDFFN 246
AD++R +E + LRD +D +I I + GG +R ++L D F
Sbjct: 363 ADIYRALLEGIAYELRDN-LDALEAAGIKIDRIRVTGGGSRSDLWLQILADIFG 415
>gnl|CDD|236872 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
Length = 564
Score = 28.7 bits (65), Expect = 6.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 266 AQPVQKLLQDFFNGKELNK-SINPDEA--------VAYGAAVQAAILHGDKSEEVQDLLL 316
+ + L+++F E + P+E A GAA++ +H D EV+D+L
Sbjct: 394 IEEARAYLKEYFKSAEGDFFECTPEEGKKAFLHRFAAAGAAIRYRAVHRD---EVEDILA 450
Query: 317 LDV 319
LD+
Sbjct: 451 LDI 453
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 28.4 bits (64), Expect = 7.5
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 134 KKDLTTNKRALRRLRTACERAKRTLSSSTQA---SIEIDSLFEGVDFYTSVTRARLSVTR 190
++ L +RA R L C+R + L + E+++ E + S R R R
Sbjct: 526 EQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALR 585
Query: 191 ARFEELNAD 199
+ E+L A
Sbjct: 586 QQLEQLQAR 594
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 28.3 bits (64), Expect = 9.6
Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 41/169 (24%)
Query: 135 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFE 194
DL L L+T ERA+ L +++Q +I +L +G V L ++
Sbjct: 142 NDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG----GKVGGKALRPSQR--V 195
Query: 195 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 254
L A E++L +A+ D + + G+T LQD +
Sbjct: 196 LLQA----------EQALLNAQNDLQRK----SLEGNT-------QLQDLLQKQR----- 229
Query: 255 NPDVTTLCWSVAQPVQKLLQDFFNGKELNKS-------INPDEAVAYGA 296
D T + +LLQ+ N K L S + DEA A
Sbjct: 230 --DYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQA 276
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.370
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,250,132
Number of extensions: 1902497
Number of successful extensions: 2265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2136
Number of HSP's successfully gapped: 112
Length of query: 379
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 280
Effective length of database: 6,546,556
Effective search space: 1833035680
Effective search space used: 1833035680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)