RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4399
(379 letters)
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 618 bits (1596), Expect = 0.0
Identities = 250/321 (77%), Positives = 267/321 (83%), Gaps = 44/321 (13%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
MVLTKMKE AEAYLGKTV+NAV+TVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAAI
Sbjct: 122 MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAI 181
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDKK ERNVLIFDLGGGTFDVSILTI GIFEVKSTAGDTHLGGEDFDNR
Sbjct: 182 AYGLDKK-----VGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNR 236
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
MVNHF+ EFKRK+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYT
Sbjct: 237 MVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT- 295
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
S+TRARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK
Sbjct: 296 ------SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPK---- 345
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
+QKLLQDFFNGKELNKSINPDEAVAYGAAVQA
Sbjct: 346 ----------------------------IQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 377
Query: 301 AILHGDKSEEVQDLLLLDVTP 321
AIL GDKSE VQDLLLLDVTP
Sbjct: 378 AILSGDKSENVQDLLLLDVTP 398
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 596 bits (1540), Expect = 0.0
Identities = 233/306 (76%), Positives = 249/306 (81%), Gaps = 42/306 (13%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
MVLTKMKE AEAYLG V +AVITVPAYFNDSQRQATKD+GTI GLNVLRIINEPTAAAI
Sbjct: 141 MVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAI 200
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDKK + GE+NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR
Sbjct: 201 AYGLDKKGCA---GGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 257
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
MV+H +EFKRK+KKD+ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EGVDFYT
Sbjct: 258 MVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYT- 316
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
S+TRARFEELNADLFRGT+EPVEK+LRDAK+DK QI +IVLVGGSTRIPK
Sbjct: 317 ------SITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPK---- 366
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
+QKLLQDFFNGKELNKSINPDEAVAYGAAVQA
Sbjct: 367 ----------------------------IQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 398
Query: 301 AILHGD 306
AIL GD
Sbjct: 399 AILIGD 404
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 593 bits (1532), Expect = 0.0
Identities = 162/303 (53%), Positives = 213/303 (70%), Gaps = 45/303 (14%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M+L KMK+ AE YLG V++AV+TVPAYFND+QRQATKD+GTIAGLNVLRI+NEPTAAAI
Sbjct: 136 MILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAI 195
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDK E ++++DLGGGTFDVS+L+IE+G+FEV++T+GDTHLGGEDFD +
Sbjct: 196 AYGLDKS------DKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYK 249
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+V ++ FK+K+ D++ N +AL +L+ E+AKR LSS IEIDS +G+D
Sbjct: 250 IVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDLSE- 308
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
++TRA+FEELN DLF+ T++PVEK L+D+ ++K + DIVLVGGSTRIPK
Sbjct: 309 ------TLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPK---- 358
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
VQ+LL+ +F+GK+ +K INPDEAVAYGAAVQA
Sbjct: 359 ----------------------------VQQLLESYFDGKKASKGINPDEAVAYGAAVQA 390
Query: 301 AIL 303
+L
Sbjct: 391 GVL 393
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 568 bits (1467), Expect = 0.0
Identities = 99/321 (30%), Positives = 155/321 (48%), Gaps = 42/321 (13%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
M + K+K+T + +++ I VP ++ + QR D+ IAGLN +RI+N+ TAA +
Sbjct: 121 MFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGV 180
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
+YG+ K R V D+G ++ SI+ + G +V TA D H GG DFD
Sbjct: 181 SYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLA 240
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+ HF EFK KYK D+ N +A R+ TA E+ K+ LS++T A ++S+ VD +
Sbjct: 241 ITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSS- 299
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
++R EEL L EPV K+L AK+ ++ + ++GG+TRIP +++
Sbjct: 300 ------QLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQS 353
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
+ + F GK L+ ++N DEA+A GAA
Sbjct: 354 ISEAF---------------------------------GKPLSTTLNQDEAIAKGAAFIC 380
Query: 301 AILHGDKSEEVQDLLLLDVTP 321
AI V+ D+ P
Sbjct: 381 AIHSPT--LRVRPFKFEDIHP 399
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 403 bits (1038), Expect = e-138
Identities = 150/325 (46%), Positives = 208/325 (64%), Gaps = 55/325 (16%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
++L +K AE YLG+ V+ AVITVPAYFND+QRQATKD+G IAGL V RIINEPTAAA+
Sbjct: 92 IILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAAL 151
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
AYGLDK+ ++ +L++DLGGGTFDVSIL + DG+FEVK+TAGD HLGG+DFD
Sbjct: 152 AYGLDKE-------EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQV 204
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
++++ V +FK+++ DL+ +K AL+RL+ A E+AK+ LS TQ I + F ++
Sbjct: 205 IIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISL-------PFISA 257
Query: 181 VTRA----RLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 236
+++TRA+FEEL+A L TM PV ++L+DA + A I ++LVGGSTRIP
Sbjct: 258 NENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPA 317
Query: 237 VQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGA 296
VQ+ ++ GKE +K +NPDE VA GA
Sbjct: 318 VQEAIKREL---------------------------------GKEPHKGVNPDEVVAIGA 344
Query: 297 AVQAAILHGDKSEEVQDLLLLDVTP 321
A+Q ++ G+ V+D++LLDVTP
Sbjct: 345 AIQGGVIAGE----VKDVVLLDVTP 365
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 405 bits (1044), Expect = e-138
Identities = 155/329 (47%), Positives = 205/329 (62%), Gaps = 58/329 (17%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
VL KMK+TAE YLG+ V+ AVITVPAYFND+QRQATKD+G IAGL V RIINEPTAAA+
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGED 116
AYGLDK +G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGED
Sbjct: 178 AYGLDKG------TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGED 231
Query: 117 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 176
FD+R++N+ V+EFK+ DL + A++RL+ A E+AK LSS+ Q + +
Sbjct: 232 FDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL-------P 284
Query: 177 FYTSVTRA----RLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 232
+ T+ + VTRA+ E L DL ++EP++ +L+DA + + I D++LVGG T
Sbjct: 285 YITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQT 344
Query: 233 RIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAV 292
R+P VQK + +FF GKE K +NPDEAV
Sbjct: 345 RMPMVQKKVAEFF---------------------------------GKEPRKDVNPDEAV 371
Query: 293 AYGAAVQAAILHGDKSEEVQDLLLLDVTP 321
A GAAVQ +L GD V+D+LLLDVTP
Sbjct: 372 AIGAAVQGGVLTGD----VKDVLLLDVTP 396
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 394 bits (1015), Expect = e-137
Identities = 143/311 (45%), Positives = 191/311 (61%), Gaps = 54/311 (17%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
VL KMK+TAE YLG+ V+ AVITVPAYFND+QRQATKD+G IAGL V RIINEPTAAA+
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGED 116
AYGLDK +G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGED
Sbjct: 178 AYGLDKG------TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGED 231
Query: 117 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 176
FD+R++N+ V+EFK+ DL + A++RL+ A E+AK LSS+ Q + +
Sbjct: 232 FDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL-------P 284
Query: 177 FYTSVTRA----RLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 232
+ T+ + VTRA+ E L DL ++E ++ +L+DA + + I D++LVGG T
Sbjct: 285 YITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQT 344
Query: 233 RIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAV 292
R+P VQK + +FF GKE K +NPDEAV
Sbjct: 345 RMPMVQKKVAEFF---------------------------------GKEPRKDVNPDEAV 371
Query: 293 AYGAAVQAAIL 303
A GAAVQ +L
Sbjct: 372 AIGAAVQGGVL 382
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 113 bits (286), Expect = 2e-29
Identities = 44/300 (14%), Positives = 83/300 (27%), Gaps = 102/300 (34%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
++ ++K E LG + A +P +A AGL ++ +++EP AAA
Sbjct: 75 QIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAAR 134
Query: 61 AYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 120
A G++ + D+GGGT ++++ D GG
Sbjct: 135 ALGIN---DGI---------VVDIGGGTTGIAVIEKGKITA-----TFDEPTGGTHLSLV 177
Query: 121 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 180
+ + F A E K+ S + +
Sbjct: 178 LAGSYKIPF------------------EEA-ETIKKDFSRHREIMRVV------------ 206
Query: 181 VTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 240
R +E + +++ + Q + +VGG+ + +
Sbjct: 207 ---------------------RPVIEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEE 245
Query: 241 LQDFFNGKELNKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
F GKE+ I+P G A+
Sbjct: 246 FSRFL---------------------------------GKEVQVPIHPLLVTPLGIALFG 272
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 86.4 bits (213), Expect = 3e-19
Identities = 25/276 (9%), Positives = 74/276 (26%), Gaps = 75/276 (27%)
Query: 25 VPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDL 84
+ + +++ T + G + ++++ E A + ++LI DL
Sbjct: 119 IERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD-------ELDSLLIIDL 171
Query: 85 GGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRAL 144
GG T D+S + + + GD+ LG + + + + ++ A
Sbjct: 172 GGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTK------GSSYLAD 223
Query: 145 RRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGT 204
+ + + + I I +
Sbjct: 224 DIIIHRKDNNYLKQRINDENKISI----------------------------VTEAMNEA 255
Query: 205 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWS 264
+ +E+ + + + + ++++GG + + ++ + +
Sbjct: 256 LRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHT-QIRDERFFKTN------- 305
Query: 265 VAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
N + G +
Sbjct: 306 ----------------------NSQYDLVNGMYLIG 319
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 72.9 bits (178), Expect = 2e-14
Identities = 41/279 (14%), Positives = 79/279 (28%), Gaps = 59/279 (21%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVIT-VPAYFNDSQRQATKD------------SGTIAGLN 47
++ + E+ G V + + P D + +A K+ G + N
Sbjct: 103 LIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFN 162
Query: 48 VLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 107
+ R+I P A L + G ++ D+G T DV + + D V +
Sbjct: 163 ITRLIMRPQGVGAALYLLNQGIIEQQPG--YGVVIDVGSRTTDVLTINLMDMEP-VVELS 219
Query: 108 GDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIE 167
+G D + + +E DL
Sbjct: 220 FSLQIGVGDAISALSRKIAKETGFVVPFDL------------------------------ 249
Query: 168 IDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVL 227
+ V+ E+L + +E + +LR + ++
Sbjct: 250 AQEALSHPVMFRQKQVGGPEVSGPILEDLANRI----IENIRLNLRGEVDR---VTSLIP 302
Query: 228 VGGSTRIPKVQKLLQDFFNGKELNKSINPDVTTLCWSVA 266
VGG + L+ D F + L ++ A
Sbjct: 303 VGGGSN------LIGDRFEEIAPGTLVKIKPEDLQFANA 335
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 9e-13
Identities = 77/404 (19%), Positives = 132/404 (32%), Gaps = 115/404 (28%)
Query: 23 ITVPA--YFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 80
+ VP +F SQ ++ +I+ EPT + D + + A +
Sbjct: 20 LLVPTASFFIASQL---QEQ-------FNKILPEPTEG---FAADDEPTTPAELVGK--- 63
Query: 81 IFDLG----------GGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 130
F LG G FD +L + FE + +L G D ++ +
Sbjct: 64 -F-LGYVSSLVEPSKVGQFD-QVLNLCLTEFE------NCYLEGND-----IHALAAKLL 109
Query: 131 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARL---- 186
++ L K ++ TA AKR + + +LF V A+L
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-----ALFRAV----GEGNAQLVAIF 160
Query: 187 ---SVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 243
T FEEL DL++ T + L + + L+ + KV
Sbjct: 161 GGQGNTDDYFEEL-RDLYQ-TYHVLVGDL----IKFSAETLSELIRTTLDAEKV------ 208
Query: 244 FFNGKEL-----NKSINPDVTTLCWS-VAQPVQKLLQDFFN----GKELNKSINPDE--- 290
F G + N S PD L ++ P+ ++Q + K L P E
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLG--FTPGELRS 265
Query: 291 ----AVAYGAAVQAA--ILHGDKSEE-----VQDLLLL--------DVTPQLA-WRSFKN 330
A + + A I D E + + +L + P + S
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 331 DS--YGVDIDTIMNNLAIK-IPLQQVKNTVEE----LINEGHIY 367
DS + + M L+I + +QV++ V + L +
Sbjct: 326 DSLENNEGVPSPM--LSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Score = 48.9 bits (116), Expect = 2e-06
Identities = 64/384 (16%), Positives = 107/384 (27%), Gaps = 160/384 (41%)
Query: 14 LGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAG 73
LG T P + AT G GL TA AIA
Sbjct: 256 LGFT--------PGELRSYLKGAT---GHSQGL--------VTAVAIA---------ETD 287
Query: 74 SGE---RNV-----LIF------------------------DLGGGT-------FDVSIL 94
S E +V ++F + G +++
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 95 TIEDGIFEVKSTAGDTHLGGEDFDNR----MVN---HFVQEFKRKYKKDLTTNKRALRRL 147
++D + + ++HL + +VN + V ++ ++L L
Sbjct: 348 QVQDYVNKT-----NSHLPA---GKQVEISLVNGAKNLV----------VSGPPQSLYGL 389
Query: 148 RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEP 207
+AK S Q+ I + F L V + F ++ L + P
Sbjct: 390 NLTLRKAKAP-SGLDQSRIPFSE--RKLKFSNRF----LPVA-SPF---HSHL----LVP 434
Query: 208 -VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK---ELNKSINPD----VT 259
+ +D + + +IP + D F+G L+ SI+ +
Sbjct: 435 ASDLINKDLVKNNVSFN-----AKDIQIP-----VYDTFDGSDLRVLSGSISERIVDCII 484
Query: 260 TLC--WSVAQPVQ--KLLQDFFNGK-----ELNKSINPDEAVAYGAAVQAAILHGDKSEE 310
L W + +L DF G L G V I+ G
Sbjct: 485 RLPVKWETTTQFKATHIL-DFGPGGASGLGVLTHRN----KDGTGVRV---IVAGT---- 532
Query: 311 VQDLLLLDVTPQLAWRSFKNDSYG 334
LD+ P +D YG
Sbjct: 533 ------LDINP--------DDDYG 542
Score = 43.9 bits (103), Expect = 9e-05
Identities = 35/255 (13%), Positives = 78/255 (30%), Gaps = 82/255 (32%)
Query: 174 GVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 233
G+D Y + + + AD + S+ D + ++ + GG
Sbjct: 1632 GMDLYKTS-----KAAQDVWNR--ADNH--FKDTYGFSILDI-VINNPVNLTIHFGG--- 1678
Query: 234 IPKVQKLLQDF------------FNGKELNKSINPDVTTLCWS----------VAQP--- 268
K +++ +++ +++ K IN T+ + QP
Sbjct: 1679 -EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 269 -----VQKLLQDFFNGKELNKSINPDEAVA------YGA-AVQAAILHGDKSEEVQDLLL 316
+ L+ I D A Y A A A ++ ++ L+
Sbjct: 1738 LMEKAAFEDLKSKGL-------IPADATFAGHSLGEYAALASLADVM------SIESLVE 1784
Query: 317 LDVTPQLAWR------SFKNDSYGVDIDTIM----NNLAIKIPLQQVKNTVEELINE-GH 365
+ + +R + D G ++ +A + ++ VE + G
Sbjct: 1785 V-----VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 366 IYTTIDDN--HYQTV 378
+ ++ N + Q V
Sbjct: 1840 LVEIVNYNVENQQYV 1854
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 64.3 bits (156), Expect = 1e-11
Identities = 26/240 (10%), Positives = 65/240 (27%), Gaps = 60/240 (25%)
Query: 20 NAVITVPA--YFNDSQRQATKD------------SGTIAGLNVLRIINEPTAAAIAYGLD 65
V+ P N ++ +D + I + + + +
Sbjct: 107 QLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ 166
Query: 66 KKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 125
+ +NV + D GG S+ S G +D R+ +
Sbjct: 167 ENFK------NKNVAVIDFGGLNMGFSLY---RNCVVNPSERFIEEHGVKDLIIRVGD-- 215
Query: 126 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRAR 185
+L TN++A L + + + + I+
Sbjct: 216 --ALTDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVIK------------------ 255
Query: 186 LSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 245
+ ++ K + Q+ ++ +GG+T+ +++ + +
Sbjct: 256 -------------KVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY 300
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 55.5 bits (133), Expect = 9e-09
Identities = 27/196 (13%), Positives = 59/196 (30%), Gaps = 41/196 (20%)
Query: 50 RIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 109
+I+ +P + ++ A + E + D G GT + + V+ +
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFT-EGKYSVLDFGSGTTIIDTY---QNMKRVEEESFV 213
Query: 110 THLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEID 169
+ G DF R+ + +K + T + + L + + + I+
Sbjct: 214 INKGTIDFYKRIAS----HVSKKSEGASITPRMIEKGLEY------KQCKLNQKTVIDF- 262
Query: 170 SLFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVG 229
+ F + L M E ++ + I I++ G
Sbjct: 263 --------------------KDEFYKEQDSLIEEVMSNFEITVGNI----NSIDRIIVTG 298
Query: 230 GSTRIPKVQKLLQDFF 245
G I L ++
Sbjct: 299 GGANI--HFDSLSHYY 312
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA
binding protein, OB-fold, dioxan replication, DNA
binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3
PDB: 2z6k_A 1dpu_A 1z1d_A
Length = 270
Score = 54.4 bits (130), Expect = 2e-08
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 334 GVDIDTIMNNLAIKIPLQQVKNTVEELINEGHIYTTIDDNHYQTVD 379
G++ + N L + + +K V+ L NEGHIY+T+DD+H+++ D
Sbjct: 224 GLNFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTD 268
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 52.9 bits (128), Expect = 6e-08
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 20/115 (17%)
Query: 22 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 81
VI VP D +R+A D+G AG + + +I EP AAAI L+ V +G+ ++
Sbjct: 99 VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLN--VEEPSGN-----MV 151
Query: 82 FDLGGGTFDVSILTIEDGIFEVKS--TAGDTHLGGEDFDNRMVNHFVQEFKRKYK 134
D+GGGT +V+++++ I +S AGD + D +V + + Y+
Sbjct: 152 VDIGGGTTEVAVISL-GSIVTWESIRIAGD------EMDEAIVQY----VRETYR 195
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 2e-07
Identities = 42/307 (13%), Positives = 87/307 (28%), Gaps = 105/307 (34%)
Query: 109 DTHLGGEDFDNR-MVNHFVQEFKR----KYKKDLTTNKRALRRLRTACERAKRTLSSSTQ 163
D G + + +++ F F K +D+ K LS
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP----------------KSILSKE-- 49
Query: 164 ASIEIDSLF------EGVDFYTSVTRARLSVTRARF--EELNADLFRGTMEPVEKSLRDA 215
EID + G ++ +F E L + ++ M P++ R
Sbjct: 50 ---EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQP 105
Query: 216 KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP-DVTTLCWSVAQPVQKLLQ 274
M I + +L D N+ +V+ L QP KL
Sbjct: 106 SMMT-----------RMYIEQRDRLYND-------NQVFAKYNVSRL-----QPYLKL-- 140
Query: 275 DFFNGKELNKSINPDEAVAYGAAVQAAILHGD----KS----EEVQDLLLLDVTP-QLAW 325
++ + P + V ++ G K+ + + ++ W
Sbjct: 141 -----RQALLELRPAKNV---------LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 326 RSFKNDSYGVDIDTIMNNL----------------AIKIPLQQVKNTVEELINEGHIYTT 369
+ KN + + ++ L IK+ + ++ + L+ Y
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYEN 245
Query: 370 ----IDD 372
+ +
Sbjct: 246 CLLVLLN 252
Score = 46.8 bits (110), Expect = 9e-06
Identities = 57/339 (16%), Positives = 102/339 (30%), Gaps = 107/339 (31%)
Query: 88 TFDVS----ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY----KKDL-- 137
F++S + T + + S A TH+ + + V+ KY +DL
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 138 ---TTNKRAL----RRLR-----------TACERAKRTLSSS--TQASIEIDSLFEGVDF 177
TTN R L +R C++ + SS E +F+
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--RL 378
Query: 178 YTSVTRARLSVTRARFEELNADLFRGTMEPV-----EKSL--RDAKMDKAQIHDIVLVGG 230
SV + + D+ + + V + SL + K I I L
Sbjct: 379 --SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL--- 433
Query: 231 STRIPKVQKLLQDFFNGKELNKSI----NPDVTTLCWSVAQPVQKLLQD--FFNGKELNK 284
+L N L++SI N T + P D F++
Sbjct: 434 --------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY----LDQYFYS------ 475
Query: 285 SINPDEAVAYGAAVQAAILHGDKSEEVQDL-----LLLDVTPQLAW--RSFKNDSYGVDI 337
+ + H E + + + LD + + ++DS +
Sbjct: 476 ------HIGH---------HLKNIEHPERMTLFRMVFLD----FRFLEQKIRHDSTAWNA 516
Query: 338 DTIMNNLAIKIPLQQVKNTVEELINEGHIYTTIDDNHYQ 376
+ N LQQ+K + +I +D Y+
Sbjct: 517 SGSILNT-----LQQLKFY------KPYI--CDNDPKYE 542
Score = 34.4 bits (78), Expect = 0.061
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 21/112 (18%)
Query: 111 HLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDS 170
HL + RM F+ + D ++ +R TA AS I +
Sbjct: 480 HLKNIEHPERM-----TLFRMVFL-DFRFLEQKIRHDSTAW-----------NASGSILN 522
Query: 171 LFEGVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQI 222
+ + FY + + ++E L + + E + D +I
Sbjct: 523 TLQQLKFY----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 50.2 bits (120), Expect = 5e-07
Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 36/204 (17%)
Query: 44 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEV 103
AGL + + +P A A +R L+ D+G + + +L
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEAR-----LAEEPDRVFLVLDIGAESTSLVLL--RGDKPLA 215
Query: 104 KSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ 163
L G+DF + F + E KRT +T
Sbjct: 216 ---VRVLTLSGKDFTEAIARSFNLDLLA-------------------AEEVKRTYGMATL 253
Query: 164 ASIEIDSLFEGVDFYTSVTRARLS-VTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQI 222
+ + + L + + R+ R EL R ++E L +A +
Sbjct: 254 PTEDEELLLDFDAERERYSPGRIYDAIRPVLVEL-TQELRRSLEFFRIQLEEASPEV--- 309
Query: 223 HDIVLVGGSTRIPKVQKLLQDFFN 246
L+GG +++ + LL D
Sbjct: 310 --GYLLGGGSKLRGLASLLTDTLG 331
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 48.1 bits (115), Expect = 2e-06
Identities = 30/211 (14%), Positives = 66/211 (31%), Gaps = 45/211 (21%)
Query: 44 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN--VLIFDLGGGTFDVSILTIEDGIF 101
+ ++ + + A + E++ V++ +LG + ++G+
Sbjct: 180 TVKSPFQLKSSLVSTAEG---------VLTTPEKDRGVVVVNLGYNFTGLIA--YKNGV- 227
Query: 102 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRT---- 157
+ +G + D+ L ER T
Sbjct: 228 -PIKISYVP-VGMKHVIK----------------DV---SAVLDTSFEESERLIITHGNA 266
Query: 158 -LSSSTQASIEIDSLFEGVDFYTSVTRARLS-VTRARFEELNADLFRGTMEPVEKSLRDA 215
+ + I+ L + + T +LS + AR E+ + VE + +
Sbjct: 267 VYNDLKEEEIQYRGL--DGNTIKTTTAKKLSVIIHARLREI-MSKSKKFFREVEAKIVEE 323
Query: 216 KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246
+VL GG +IP++ +L + F
Sbjct: 324 GEIG-IPGGVVLTGGGAKIPRINELATEVFK 353
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 40.8 bits (96), Expect = 6e-04
Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 38/117 (32%)
Query: 198 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 253
+L R +E + S RD + A I I+L+GG + ++ L
Sbjct: 397 ENLARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSILG------- 449
Query: 254 INPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEE 310
V + DE VA GAA QAA + ++E
Sbjct: 450 -------------MDVTRP--------------ATDEYVAIGAARQAAWVLSGETEP 479
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 32.2 bits (74), Expect = 0.27
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 37/109 (33%)
Query: 198 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 253
+L R +E V +L D + + L+GG R +++L
Sbjct: 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQML------------ 406
Query: 254 INPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 302
D++ G++L+ D A GAA A I
Sbjct: 407 --ADIS-------------------GQQLDYRTGGDVGPALGAARLAQI 434
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 31.9 bits (73), Expect = 0.37
Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 35/107 (32%)
Query: 198 ADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 255
A + +E SLR + ++ + +VGG R +++ D N
Sbjct: 377 AQILLAVLEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMIADNLN--------- 427
Query: 256 PDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 302
+ + G A AA+
Sbjct: 428 -----------VSLLVKP-------------DAHLHPLRGLAALAAV 450
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 30.7 bits (70), Expect = 0.55
Identities = 5/23 (21%), Positives = 7/23 (30%), Gaps = 4/23 (17%)
Query: 299 QAAILHGDKSEEVQDLLLLDVTP 321
L + +DVTP
Sbjct: 9 SGVDLGTE----NLYFQSMDVTP 27
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 28.9 bits (65), Expect = 1.6
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 300 AAILHGDKSEEVQDLLLLDVTP 321
++ H + ++DVTP
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTP 24
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; 1.65A {Homo sapiens}
Length = 89
Score = 27.7 bits (62), Expect = 1.8
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 78 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 114
+L+ +G + VS L + G + + G H+ G
Sbjct: 45 EILVKHVGSRLYSVSYLLKDKGEYTLVVKWGHEHIPG 81
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.9
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 8/32 (25%)
Query: 141 KRALRRLRT-----ACERAKRTLSSSTQASIE 167
K+AL++L+ A + A L + +A++E
Sbjct: 19 KQALKKLQASLKLYADDSAP-AL--AIKATME 47
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 28.9 bits (65), Expect = 3.7
Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 19/96 (19%)
Query: 142 RALRRLRTACERAKRTLSSST-----QASIEIDSLFEGVDFYTSVTRARLSVTRARFEEL 196
+A + LS A + + E + R+RL T+A E
Sbjct: 274 KATDLFLKDIQVLVSELSMVEATPELLALVGEEGAAEPYRYLMKNLRSRLMATQAWLEAR 333
Query: 197 --------------NADLFRGTMEPVEKSLRDAKMD 218
+ + +SL+ M
Sbjct: 334 LKGEELPKPEGLLTQNEELWEPLYACYQSLQACGMG 369
>3lvy_A Carboxymuconolactone decarboxylase family; alpha-structure,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Streptococcus mutans}
Length = 207
Score = 28.0 bits (62), Expect = 4.5
Identities = 7/54 (12%), Positives = 12/54 (22%), Gaps = 16/54 (29%)
Query: 175 VDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLV 228
F +V + V F + + D+VL
Sbjct: 141 AKFTIAVINTKGRVGDEAFADF----------------LEVGYTPENALDVVLG 178
>3cmn_A Putative hydrolase; PSI-II, NYSGXRC, apoenzyme, helical protein,
10492M, structural genomics, protein structure
initiative; 2.25A {Chloroflexus aurantiacus j-10-fl}
SCOP: d.92.1.16
Length = 372
Score = 27.8 bits (61), Expect = 5.7
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 174 GVDFYTSVTRARLSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 232
GV V+R + R + E N F P+E+ + + ++ S
Sbjct: 64 GVRLPEPVSRIFV-FDRREWLEANIVSFSQLFRPIEEMYEKNGGGRGALGVLMNDVSSK 121
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 28.0 bits (62), Expect = 6.4
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 27/177 (15%)
Query: 79 VLIFDLGGGTFDVSILTIEDGIFEVKSTAG---------DTHLGGEDFDNRMVNHFVQEF 129
+ I DLG G+ D SI+ G AG LG ED + E
Sbjct: 409 LAILDLGAGSTDASIIN-PKGDIIATHLAGAGDMVTMIIARELGLEDRY-------LAEE 460
Query: 130 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEI--DSLFEGVDFYTSVTRARLS 187
+KY + LR + + L + A + + + ++ + R
Sbjct: 461 IKKYPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAI 520
Query: 188 VTRARFEELNADLFRGTME-PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 243
A+ + R + ++RD I +VLVGGS+ +V +L+ D
Sbjct: 521 RRSAKERVFVTNALRALRQVSPTGNIRD-------IPFVVLVGGSSLDFEVPQLVTD 570
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 27.6 bits (61), Expect = 7.6
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 77 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAG 108
+ I DLG G+ D +I+ +G AG
Sbjct: 409 APLAILDLGAGSTDAAIVN-AEGQITAVHLAG 439
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis
multifunctional enzyme, cell WALL, peptidoglycan, gamma
lactam antibiotics; HET: PL7; 2.4A {Streptococcus
pneumoniae} PDB: 2jci_A* 2je5_A*
Length = 720
Score = 27.4 bits (61), Expect = 8.8
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 2/99 (2%)
Query: 283 NKSINPDEAVAYGAA-VQAAILHGDKSEEVQDLLLLDVTPQLAWRSFKNDSYGVDIDTIM 341
+++ DE Y ++ L + L T A + D +
Sbjct: 234 TGALSKDEYSQYKDYDLKQDFLPSGTVTGISQDYLYFTTLAEAQERMYDYLAQRDNVSAK 293
Query: 342 NNLAIKIPLQQVKNTVEELINEG-HIYTTIDDNHYQTVD 379
+E+ N G I TTID + +
Sbjct: 294 ELKNEATQKFYRDLAAKEIENGGYKITTTIDQKIHSAMQ 332
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.370
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,736,683
Number of extensions: 358585
Number of successful extensions: 1113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1070
Number of HSP's successfully gapped: 61
Length of query: 379
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 284
Effective length of database: 4,049,298
Effective search space: 1150000632
Effective search space used: 1150000632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)