RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4399
(379 letters)
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 246 bits (629), Expect = 8e-82
Identities = 173/229 (75%), Positives = 187/229 (81%), Gaps = 39/229 (17%)
Query: 75 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 134
ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+K
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHK 62
Query: 135 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFE 194
KD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYT S+TRARFE
Sbjct: 63 KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT-------SITRARFE 115
Query: 195 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 254
ELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK
Sbjct: 116 ELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPK------------------ 157
Query: 255 NPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 303
+QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL
Sbjct: 158 --------------IQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 192
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 244 bits (624), Expect = 5e-81
Identities = 90/233 (38%), Positives = 131/233 (56%), Gaps = 40/233 (17%)
Query: 75 GERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 130
G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 131 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTR 190
+ DL + A++RL+ A E+AK LSS+ Q + + + + + VTR
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMN---IKVTR 117
Query: 191 ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL 250
A+ E L DL ++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF
Sbjct: 118 AKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF----- 172
Query: 251 NKSINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 303
GKE K +NPDEAVA GAAVQ +L
Sbjct: 173 ----------------------------GKEPRKDVNPDEAVAIGAAVQGGVL 197
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 118 bits (296), Expect = 2e-32
Identities = 52/67 (77%), Positives = 58/67 (86%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
VL KMK+TAE YLG+ V+ AVITVPAYFND+QRQATKD+G IAGL V RIINEPTAAA+
Sbjct: 116 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 175
Query: 61 AYGLDKK 67
AYGLDK
Sbjct: 176 AYGLDKG 182
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 113 bits (283), Expect = 1e-30
Identities = 63/67 (94%), Positives = 66/67 (98%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
MVLTKMKE AEAYLGKTV+NAV+TVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAAI
Sbjct: 119 MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAI 178
Query: 61 AYGLDKK 67
AYGLDKK
Sbjct: 179 AYGLDKK 185
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 103 bits (258), Expect = 6e-27
Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 55/240 (22%)
Query: 76 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 135
++ D+GGGT +V+++++ + + G++ D +V + + ++ +
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIVTW-----ESIRIAGDEMDEAIVQYVRETYRVAIGE 60
Query: 136 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEE 195
+ + + + ++ L G+ ++ E
Sbjct: 61 RTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKL-------TLKGGEVRE 108
Query: 196 LNADLFRGTMEPVEKSLRDAKMDKAQ---IHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 252
+ +E V +L + I L GG + + + LLQ
Sbjct: 109 ALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET------- 161
Query: 253 SINPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQ 312
G + +S P AVA GA + + + +++Q
Sbjct: 162 --------------------------GISVIRSEEPLTAVAKGAGMVLDKV--NILKKLQ 193
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 90.7 bits (224), Expect = 2e-22
Identities = 22/225 (9%), Positives = 55/225 (24%), Gaps = 68/225 (30%)
Query: 76 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 135
++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 6 LDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLART----- 58
Query: 136 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEE 195
SS A I + +
Sbjct: 59 ----------------------KGSSYLADDIIIHRKDNNYLKQ-------RINDENKIS 89
Query: 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 255
+ + + +E+ + + + + ++++GG + + ++ +
Sbjct: 90 IVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHT-QIRDERFFK 146
Query: 256 PDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 300
+ N + G +
Sbjct: 147 TN-----------------------------NSQYDLVNGMYLIG 162
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 78.6 bits (193), Expect = 4e-18
Identities = 19/180 (10%), Positives = 46/180 (25%), Gaps = 40/180 (22%)
Query: 76 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 135
++ D+G T DV + + D V + +G D + + +E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 136 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEE 195
DL + + + V+ E+
Sbjct: 64 DL---AQEALSHPVMFRQKQVGGP---------------------------EVSGPILED 93
Query: 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 255
L + + + + ++ VGG + + + ++ G +
Sbjct: 94 LANRIIENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPE 144
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 77.1 bits (189), Expect = 7e-18
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 1 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 60
++L A+ + VI VP D +R+A D+G AG + + +I EP AAAI
Sbjct: 75 VMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI 134
Query: 61 AYGLD 65
G +
Sbjct: 135 --GSN 137
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 55.5 bits (134), Expect = 6e-11
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 334 GVDIDTIMNNLAIKIPLQQVKNTVEELINEGHIYTTIDDNHYQTVD 379
G++ + N L + + +K V+ L NEGHIY+T+DD+H+++ D
Sbjct: 23 GLNFQDLKNQL-KHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTD 67
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 191
Score = 39.5 bits (91), Expect = 2e-04
Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 22/171 (12%)
Query: 76 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 135
+R V++ +LG + ++G+ +G + + F+ ++
Sbjct: 6 DRGVVVVNLGYNFTGLIA--YKNGVPI---KISYVPVGMKHVIKDVSAVLDTSFEES-ER 59
Query: 136 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARLSVTRARFEE 195
+ T+ A+ E R L +T + L + AR E
Sbjct: 60 LIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSV--------------IIHARLRE 105
Query: 196 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 246
+ + VE + + +VL GG +IP++ +L + F
Sbjct: 106 I-MSKSKKFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 154
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 32.6 bits (74), Expect = 0.037
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 308 SEEVQDLLLLDVTP 321
SE VQDLLLLDVTP
Sbjct: 1 SENVQDLLLLDVTP 14
>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 115
Score = 28.4 bits (63), Expect = 0.53
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 65 DKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 107
D + + G I + G + + + DG ++V+ T
Sbjct: 40 DSRPLTQVGGDHIKAHIANPSGASTECFVTDNADGTYQVEYTP 82
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 28.7 bits (63), Expect = 1.0
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 50 RIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSIL 94
R + EP+ A G+ K + GER I L G + L
Sbjct: 278 RAVAEPSGALALAGMKKYIALHNIRGERLAHI--LSGANVNFHGL 320
>d1woqa2 c.55.1.10 (A:140-263) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 124
Score = 27.6 bits (61), Expect = 1.4
Identities = 9/51 (17%), Positives = 25/51 (49%)
Query: 254 INPDVTTLCWSVAQPVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 304
+P++ + +++ + L + + ++ +EA GAA++ A+ H
Sbjct: 74 FSPELFIVGGGISKRADEYLPNLRLRTPIVPAVLRNEAGIVGAAIEIALQH 124
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 28.1 bits (62), Expect = 1.7
Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 21/167 (12%)
Query: 80 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVN-------HFVQEFKRK 132
++ D G G + I +G + + L G D + ++ FV +R+
Sbjct: 5 IVLDSGDGV--THNVPIYEG-YALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAERE 61
Query: 133 YKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYT-SVTRARLSVTRA 191
+D+ L E A SSS + S E+ D ++ R
Sbjct: 62 IVRDIKEKL-CYVALDFENEMATAASSSSLEKSYELP------DGQVITIGNERFRCPET 114
Query: 192 RFEELNADL-FRGTMEPVEKSL--RDAKMDKAQIHDIVLVGGSTRIP 235
F+ + G E S+ D + K + V+ GG+T P
Sbjct: 115 LFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 161
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux
pump component {Escherichia coli [TaxId: 562]}
Length = 428
Score = 28.2 bits (61), Expect = 1.9
Identities = 13/89 (14%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 111 HLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQA-SIEID 169
+ G + V + R ++ + ++ + A A+ +L + S+
Sbjct: 308 NFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTR 367
Query: 170 SLFEGVDFYTSVTRARLSVTRARFEELNA 198
++ + +D T++ A+ + AR+ L
Sbjct: 368 TIVDVLDATTTLYNAKQELANARYNYLIN 396
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase
LysA {Escherichia coli [TaxId: 562]}
Length = 174
Score = 27.3 bits (60), Expect = 2.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 47 NVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLG 85
N+LR+ E Y L +V S G R+ ++ D G
Sbjct: 15 NLLRLPAEFGCPVWVYVLITQVRSVKQMGSRHFVLVDAG 53
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 27.1 bits (60), Expect = 3.3
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 81 IFDLGGGTFDVSILTIEDGIFEVK-STAGD-------THLGGEDFD 118
I DLG G+ D SI+ + I + AGD LG ED
Sbjct: 8 ILDLGAGSTDASIINPKGDIIATHLAGAGDMVTMIIARELGLEDRY 53
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId:
9606]}
Length = 316
Score = 26.9 bits (58), Expect = 3.8
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 117 FDNRMVNHFVQEFKRKYKKDLTTNKRALRR 146
FD+ + + ++K + + N+ RR
Sbjct: 4 FDHSLEAQW-TKWKAMHNRLYGMNEEGWRR 32
>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 25.7 bits (56), Expect = 4.8
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 70 SAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 111
AG G+ + G + ++ EDG +++ TA
Sbjct: 31 KTAGKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPG 72
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 202
Score = 26.3 bits (58), Expect = 6.2
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 81 IFDLGGGTFDVSILTIEDGIFEVK-STAGD-------THLGGEDFD 118
I DLG G+ D +I+ E I V + AG+ T LG ED
Sbjct: 8 ILDLGAGSTDAAIVNAEGQITAVHLAGAGNMVSLLIKTELGLEDLS 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.370
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,352,167
Number of extensions: 63107
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 29
Length of query: 379
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,213,086
Effective search space: 354221112
Effective search space used: 354221112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)