Query psy4400
Match_columns 157
No_of_seqs 240 out of 2313
Neff 7.0
Searched_HMMs 46136
Date Sat Aug 17 00:35:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00670 asp_carb_tr aspartat 99.9 1.5E-25 3.3E-30 185.6 2.9 117 16-143 172-301 (301)
2 PLN02527 aspartate carbamoyltr 99.9 8.7E-25 1.9E-29 181.4 2.8 98 39-144 208-305 (306)
3 PRK00856 pyrB aspartate carbam 99.9 3.7E-24 8E-29 177.6 4.8 122 15-145 177-304 (305)
4 PRK13814 pyrB aspartate carbam 99.9 1.2E-23 2.6E-28 174.8 5.1 119 16-145 179-306 (310)
5 PF00185 OTCace: Aspartate/orn 99.9 4E-24 8.6E-29 162.2 0.2 95 38-141 62-158 (158)
6 PRK02255 putrescine carbamoylt 99.9 3E-23 6.5E-28 174.2 4.2 100 39-145 212-314 (338)
7 PLN02342 ornithine carbamoyltr 99.9 3E-23 6.4E-28 174.7 3.6 118 16-143 214-347 (348)
8 PRK04523 N-acetylornithine car 99.9 2.5E-23 5.5E-28 174.5 2.5 121 16-143 195-334 (335)
9 TIGR00658 orni_carb_tr ornithi 99.9 5.4E-23 1.2E-27 170.6 4.0 119 15-143 167-304 (304)
10 COG0540 PyrB Aspartate carbamo 99.9 5.1E-23 1.1E-27 169.2 3.6 124 13-146 177-315 (316)
11 PRK08192 aspartate carbamoyltr 99.9 5.9E-23 1.3E-27 172.5 2.8 102 39-149 216-323 (338)
12 PRK11891 aspartate carbamoyltr 99.9 1.8E-22 3.9E-27 173.6 4.4 118 20-149 268-404 (429)
13 PRK14805 ornithine carbamoyltr 99.9 2E-22 4.4E-27 167.0 3.6 117 15-143 166-301 (302)
14 PRK12562 ornithine carbamoyltr 99.9 1.5E-22 3.2E-27 169.8 2.1 98 39-143 215-333 (334)
15 COG0078 ArgF Ornithine carbamo 99.8 3.1E-22 6.7E-27 164.3 2.9 98 39-143 211-310 (310)
16 PRK00779 ornithine carbamoyltr 99.8 2E-22 4.3E-27 167.2 1.8 118 15-142 171-304 (304)
17 PRK04284 ornithine carbamoyltr 99.8 2.2E-22 4.8E-27 168.7 2.0 98 39-143 214-331 (332)
18 PRK03515 ornithine carbamoyltr 99.8 4.1E-22 9E-27 167.2 2.3 99 39-144 215-334 (336)
19 PRK01713 ornithine carbamoyltr 99.8 4.7E-22 1E-26 166.8 1.8 97 39-142 215-333 (334)
20 PRK02102 ornithine carbamoyltr 99.8 8.6E-22 1.9E-26 165.0 3.3 98 39-144 214-331 (331)
21 PRK07200 aspartate/ornithine c 99.8 5.1E-21 1.1E-25 163.5 3.7 122 16-140 214-373 (395)
22 TIGR03316 ygeW probable carbam 99.8 3.6E-21 7.8E-26 162.6 2.5 121 16-140 197-356 (357)
23 PRK13376 pyrB bifunctional asp 99.8 1E-20 2.3E-25 166.1 4.9 101 39-146 231-337 (525)
24 PRK14804 ornithine carbamoyltr 99.8 5.1E-20 1.1E-24 153.3 5.0 121 15-143 172-310 (311)
25 KOG1504|consensus 99.8 1.8E-19 4E-24 145.0 1.6 67 77-143 278-345 (346)
26 PLN02527 aspartate carbamoyltr 99.7 5.6E-18 1.2E-22 140.8 4.8 65 5-69 242-306 (306)
27 TIGR00670 asp_carb_tr aspartat 99.7 9.1E-18 2E-22 139.2 4.6 64 4-67 238-301 (301)
28 PF00185 OTCace: Aspartate/orn 99.7 9.8E-18 2.1E-22 127.2 4.1 60 6-65 97-158 (158)
29 PRK00856 pyrB aspartate carbam 99.7 3.6E-17 7.9E-22 135.8 4.8 65 4-68 237-303 (305)
30 PLN02342 ornithine carbamoyltr 99.7 6.8E-17 1.5E-21 136.2 5.2 64 4-67 282-347 (348)
31 TIGR00658 orni_carb_tr ornithi 99.7 7.2E-17 1.6E-21 134.0 4.9 64 4-67 239-304 (304)
32 PRK14805 ornithine carbamoyltr 99.7 9.6E-17 2.1E-21 133.2 5.1 63 4-67 237-301 (302)
33 PRK13814 pyrB aspartate carbam 99.7 1.1E-16 2.3E-21 133.3 5.2 62 7-68 242-305 (310)
34 PRK02255 putrescine carbamoylt 99.6 2.1E-16 4.5E-21 133.0 5.5 63 7-69 250-314 (338)
35 PRK00779 ornithine carbamoyltr 99.6 2.3E-16 5.1E-21 131.0 4.8 62 4-65 240-303 (304)
36 PRK04523 N-acetylornithine car 99.6 5.7E-16 1.2E-20 130.2 5.0 63 4-67 270-334 (335)
37 PRK14804 ornithine carbamoyltr 99.6 6.4E-16 1.4E-20 128.7 4.9 62 4-67 247-310 (311)
38 COG0078 ArgF Ornithine carbamo 99.6 4.7E-16 1E-20 127.9 3.9 61 7-67 248-310 (310)
39 PRK04284 ornithine carbamoyltr 99.6 9.2E-16 2E-20 128.8 5.5 64 4-67 248-331 (332)
40 PRK12562 ornithine carbamoyltr 99.6 1.1E-15 2.4E-20 128.3 5.4 63 4-66 249-332 (334)
41 PRK02102 ornithine carbamoyltr 99.6 1E-15 2.3E-20 128.4 5.1 64 4-67 247-330 (331)
42 PRK11891 aspartate carbamoyltr 99.6 1.6E-15 3.4E-20 130.9 5.2 65 4-68 329-399 (429)
43 PRK08192 aspartate carbamoyltr 99.6 1.7E-15 3.6E-20 127.5 4.8 63 6-68 250-318 (338)
44 PRK03515 ornithine carbamoyltr 99.6 2.1E-15 4.6E-20 126.8 5.3 64 4-67 249-333 (336)
45 PRK01713 ornithine carbamoyltr 99.6 2.4E-15 5.1E-20 126.4 5.2 63 4-66 249-333 (334)
46 PRK07200 aspartate/ornithine c 99.6 2.6E-15 5.6E-20 128.5 5.0 61 4-64 304-373 (395)
47 TIGR03316 ygeW probable carbam 99.5 2.7E-15 5.9E-20 126.9 3.7 61 4-64 287-356 (357)
48 COG0540 PyrB Aspartate carbamo 99.5 4.9E-15 1.1E-19 122.3 2.1 61 6-68 251-313 (316)
49 PRK13376 pyrB bifunctional asp 99.5 4.8E-14 1E-18 124.2 4.5 65 4-68 268-335 (525)
50 KOG1504|consensus 99.4 5.6E-14 1.2E-18 113.5 3.6 65 3-67 280-345 (346)
51 PLN00017 photosystem I reactio 27.6 51 0.0011 22.6 1.9 31 118-148 40-71 (90)
52 KOG3281|consensus 22.9 53 0.0012 27.0 1.6 21 89-109 143-163 (273)
No 1
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=99.91 E-value=1.5e-25 Score=185.55 Aligned_cols=117 Identities=31% Similarity=0.452 Sum_probs=93.0
Q ss_pred HHhcCCCeEEeCCCCceeeecc-------------cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccC
Q psy4400 16 MTKAKSKMAVMHPLPRVFEIAP-------------EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSC 82 (157)
Q Consensus 16 l~~a~~~~~vmHplPr~~Ei~~-------------~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~ 82 (157)
+...+.++.+.|| ++++++. .+.+++..++ ++||..+..|++.+++ .+.+++.+.+
T Consensus 172 ~a~~g~~v~~~~P--~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~-~~aDvvyt~~~~~er~--------~~~~~~~~~~ 240 (301)
T TIGR00670 172 LTRFGVEVYLISP--EELRMPKEILEELKAKGIKVRETESLEEVI-DEADVLYVTRIQKERF--------PDPEEYEKYK 240 (301)
T ss_pred HHHcCCEEEEECC--ccccCCHHHHHHHHHcCCEEEEECCHHHHh-CCCCEEEECCcccccc--------CCHHHHHHHh
Confidence 3445667777554 4554432 2357777774 9999999888754432 1224566678
Q ss_pred CccccCHHHHhccCCCcEEeCCCCCccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 83 GLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 83 ~~~~l~~e~l~~~~~~~~vmHplPR~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
.+|+||.++|+.++++++||||||||.||+++|+++|+|.+|+||+||+|+|||||+++++
T Consensus 241 ~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~~V~d~p~s~i~~QaeNrl~~~~AvL~~ll~ 301 (301)
T TIGR00670 241 GSYGITLERLEAAKKGVIIMHPLPRVDEIDPSVDDTPHAKYFKQAFNGVPVRMALLSLLLG 301 (301)
T ss_pred cCCeECHHHHhhcCCCCEEECCCCCCcccCHHHhCCccchHHHHHhccHHHHHHHHHHHhC
Confidence 8899999999999999999999999999999999999999999999999999999998875
No 2
>PLN02527 aspartate carbamoyltransferase
Probab=99.90 E-value=8.7e-25 Score=181.44 Aligned_cols=98 Identities=39% Similarity=0.562 Sum_probs=82.4
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCCCccccCccccCC
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSD 118 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplPR~~Ei~~~v~~~ 118 (157)
+.+++..++ ++||..+..|++..+.- ...++|.+.+.+|+||.++|+.++++++||||||||.||+++|+++
T Consensus 208 ~~~d~~~a~-~~aDvvyt~~~q~e~~~-------~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei~~~V~d~ 279 (306)
T PLN02527 208 ESSDLMEVA-SKCDVLYQTRIQRERFG-------ERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLDEITTDVDSD 279 (306)
T ss_pred EEcCHHHHh-CCCCEEEECCcchhhhc-------chHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcccccHHHhCC
Confidence 457777774 99999988877543321 0123455566789999999999999999999999999999999999
Q ss_pred CCchhHHHHhhcHHHHHHHHHHHhcC
Q psy4400 119 PRAAYFRQAEYGMYVRMALLTMVLGR 144 (157)
Q Consensus 119 ~~s~~~~Qa~n~~~~rmAll~~ll~~ 144 (157)
|+|.||+||+||+|+|||||+++++.
T Consensus 280 p~s~i~~QaeNrl~~~~All~~ll~~ 305 (306)
T PLN02527 280 PRAAYFRQAKNGLFIRMALLKLLLGG 305 (306)
T ss_pred CcchHHHHHhcCHHHHHHHHHHHhCC
Confidence 99999999999999999999999875
No 3
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=99.89 E-value=3.7e-24 Score=177.60 Aligned_cols=122 Identities=25% Similarity=0.349 Sum_probs=95.9
Q ss_pred HHHhcCCCeEEeCCCCceeee----cccccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHH
Q psy4400 15 IMTKAKSKMAVMHPLPRVFEI----APEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPK 90 (157)
Q Consensus 15 ~l~~a~~~~~vmHplPr~~Ei----~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e 90 (157)
.+...+.++.+.||- +++. ...+.+++..+ +++||..+..|++-++. +. +..+++.+.+.+|+||.+
T Consensus 177 ~~~~~g~~~~~~~P~--~~~~~~~~~~~~~~d~~ea-~~~aDvvyt~~~q~e~~--~~----~~~~~~~~~~~~y~v~~~ 247 (305)
T PRK00856 177 ALTRLGAEVRLIAPP--TLLPEGMPEYGVHTDLDEV-IEDADVVMMLRVQKERM--DG----GLLPSYEEYKRSYGLTAE 247 (305)
T ss_pred HHHHcCCEEEEECCc--ccCcccccceEEECCHHHH-hCCCCEEEECCcccccc--cc----cchHHHHHHhccCccCHH
Confidence 344456677775553 4442 22567888887 49999998887643221 10 012456677889999999
Q ss_pred HHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 91 IMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 91 ~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
+|+.++++++|||||| ||.||+++|+++|+|.||+||+||+|+|||||++++++.
T Consensus 248 ll~~a~~~~~~mHcLPa~Rg~Ev~~~V~d~p~s~~f~QAeNrl~~~~All~~~l~~~ 304 (305)
T PRK00856 248 RLALAKPDAIVMHPGPVNRGVEIASDVADGPQSVIFEQVTNGVAVRMAVLELLLGGR 304 (305)
T ss_pred HHhhcCCCCEEECCCCCCCCCccCHHHhCCCcchHHHHHhcCHHHHHHHHHHHhcCC
Confidence 9999999999999999 999999999999999999999999999999999999874
No 4
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=99.88 E-value=1.2e-23 Score=174.80 Aligned_cols=119 Identities=21% Similarity=0.288 Sum_probs=92.4
Q ss_pred HHhcCC-CeEEeCCCCceee----e--cccccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccC
Q psy4400 16 MTKAKS-KMAVMHPLPRVFE----I--APEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVT 88 (157)
Q Consensus 16 l~~a~~-~~~vmHplPr~~E----i--~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~ 88 (157)
+...+. ++.+.+|- +.. + ...+.+++..+ ++.||..+..|++.++ ..+..++....+.|+||
T Consensus 179 ~a~~g~~~v~~~~P~--~~~p~~~~~~~~~~~~d~~ea-~~~aDvvy~~~~~~er--------~~~~~~~~~~~~~y~v~ 247 (310)
T PRK13814 179 LVTMGVPEIRLVGPS--SLLPDKVGNDSIKKFTELKPS-LLNSDVIVTLRLQKER--------HDNSVDIDAFRGSFRLT 247 (310)
T ss_pred HHHcCCCEEEEeCCc--ccCcCccccceEEEEcCHHHH-hCCCCEEEECcccccc--------ccchhHHHHhCCCcccC
Confidence 344565 67776654 321 1 23445777777 4999999998886322 12223344444459999
Q ss_pred HHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 89 PKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 89 ~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
.++|+.++++++|||||| ||.||+++|+++|+|.||+||+||+|+|||||+++++.+
T Consensus 248 ~~~l~~a~~~~i~mHcLP~~Rg~Ei~~~V~d~p~s~if~QaeNrl~~r~AlL~~~l~~~ 306 (310)
T PRK13814 248 PEKLYSAKPDAIVMHPGPVNREVEINSDVADNQQSVILQQVRNGVAMRMAVLELFLLRD 306 (310)
T ss_pred HHHHHhcCCCCEEECCCCCCCCCeeCHHHhCCCcchHHHHHhccHHHHHHHHHHHHhhh
Confidence 999999999999999999 899999999999999999999999999999999999865
No 5
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=99.88 E-value=4e-24 Score=162.23 Aligned_cols=95 Identities=35% Similarity=0.504 Sum_probs=72.8
Q ss_pred cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCC--CccccCccc
Q psy4400 38 EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEF 115 (157)
Q Consensus 38 ~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v 115 (157)
.+.+++..+ +++||..+..|++-+ +.... .+.+. .+.+|+||.++|+.++++++|||||| ||.||+++|
T Consensus 62 ~~~~~~~e~-l~~aDvvy~~~~~s~----~~~e~---~~~~~-~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~eV 132 (158)
T PF00185_consen 62 TITDDIEEA-LKGADVVYTDRWQSM----GDKER---FKRLE-KFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDEV 132 (158)
T ss_dssp EEESSHHHH-HTT-SEEEEESSSCT----TSGGH---HHHHH-HHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHHH
T ss_pred EEEeCHHHh-cCCCCEEEEcCcccc----cchHH---HHHHH-HhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHhH
Confidence 355677766 488888887776511 00000 01122 24459999999999999999999999 999999999
Q ss_pred cCCCCchhHHHHhhcHHHHHHHHHHH
Q psy4400 116 DSDPRAAYFRQAEYGMYVRMALLTMV 141 (157)
Q Consensus 116 ~~~~~s~~~~Qa~n~~~~rmAll~~l 141 (157)
+++|+|.+|+||+||+|+|||||++|
T Consensus 133 ~~~~~s~~~~Qa~N~l~vrmAll~~l 158 (158)
T PF00185_consen 133 DDSPRSVYFEQAENRLHVRMALLALL 158 (158)
T ss_dssp HTSTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcccHHHHHHHhHHHHHHHHHHhC
Confidence 99999999999999999999999875
No 6
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=99.87 E-value=3e-23 Score=174.23 Aligned_cols=100 Identities=25% Similarity=0.269 Sum_probs=78.6
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCC-ccccCHHHHhccCCCcEEeCCCC--CccccCccc
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCG-LYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEF 115 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~-~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v 115 (157)
+.+++..+ +++||..+..+++- .++.. . ..+++.+.+. .|+||.++|+.++++++|||||| ||.||+++|
T Consensus 212 ~~~d~~ea-v~~aDvvy~~~w~~---~~~~~-~--~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis~~V 284 (338)
T PRK02255 212 VTDDVDEA-VKDADFVYTDVWYG---LYDAE-L--SEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDEV 284 (338)
T ss_pred EEcCHHHH-hCCCCEEEEcccHh---hccch-h--hHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceecHHH
Confidence 34667666 48899888877651 11111 0 1122333333 49999999999999999999999 999999999
Q ss_pred cCCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 116 DSDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 116 ~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
+++|+|.||+||+||+|+|||||+++++..
T Consensus 285 ~d~p~s~if~Qa~Nrl~vrmAlL~~ll~~~ 314 (338)
T PRK02255 285 MDSPRSICFDEAENRLTAIRALLVYFMNPY 314 (338)
T ss_pred hCCccchHHHHHhccHHHHHHHHHHHhccc
Confidence 999999999999999999999999999854
No 7
>PLN02342 ornithine carbamoyltransferase
Probab=99.87 E-value=3e-23 Score=174.69 Aligned_cols=118 Identities=24% Similarity=0.265 Sum_probs=89.6
Q ss_pred HHhcCCCeEEeCCCCceeeecc--------------cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCcc
Q psy4400 16 MTKAKSKMAVMHPLPRVFEIAP--------------EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKS 81 (157)
Q Consensus 16 l~~a~~~~~vmHplPr~~Ei~~--------------~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~ 81 (157)
+...+.++.+.+|- +++... ++.+++..+ +++||..+..+++.+. +... .+++.+.
T Consensus 214 ~~~~G~~v~~~~P~--~~~~~~~~~~~a~~~g~~~~~~~~d~~ea-v~~aDVvy~~~W~s~~----~~e~---~~~~~~~ 283 (348)
T PLN02342 214 AAVLPFHFVCACPK--GYEPDAKTVEKARAAGISKIEITNDPAEA-VKGADVVYTDVWASMG----QKEE---AEKRKKA 283 (348)
T ss_pred HHHcCCEEEEECCc--ccccCHHHHHHHHHhCCCcEEEEcCHHHH-hCCCCEEEECCccccc----cchh---hHHHHHh
Confidence 34456677775553 444322 345667766 4889998887754222 1111 1223356
Q ss_pred CCccccCHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 82 CGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 82 ~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
+.+|+||.++|+.++++++|||||| ||.||+++|+++|+|.||+||+||+|+|||||+++++
T Consensus 284 ~~~y~vt~ell~~ak~~aivMHpLP~~rg~EIs~eV~d~p~s~if~QaeNrl~vrmAlL~~llg 347 (348)
T PLN02342 284 FQGFQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVMEAPNSIVFPQAENRMHAQNAIMLHQLG 347 (348)
T ss_pred ccCCccCHHHHhccCCCcEEeCCCCcCCCceecHHHhCCcccHHHHHHhccHHHHHHHHHHHhc
Confidence 7889999999999999999999999 7999999999999999999999999999999999986
No 8
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=99.87 E-value=2.5e-23 Score=174.54 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=93.0
Q ss_pred HHhcCCCeEEeCCCCceeeec-----------------ccccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCC
Q psy4400 16 MTKAKSKMAVMHPLPRVFEIA-----------------PEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTP 78 (157)
Q Consensus 16 l~~a~~~~~vmHplPr~~Ei~-----------------~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey 78 (157)
+...+.++.+.+|- ++++++ ..+.+++..++ ++||..+..|++.++.. +.+ .+..++
T Consensus 195 ~~~~g~~v~~~~P~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~-~~aDvvy~~~w~~~~~~-~~~---~~~~~~ 268 (335)
T PRK04523 195 ATRLGMDVTLLCPT-PDYILDERYMDWAEQNAAESGGSLTVSHDIDSAY-AGADVVYAKSWGALPFF-GNW---EPEKPI 268 (335)
T ss_pred HHHcCCEEEEECCc-hhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHh-CCCCEEEeceeeccccC-Ccc---cccHHH
Confidence 34567788887761 233322 23457778774 99999999888765431 111 122334
Q ss_pred CccCCccccCHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 79 KKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 79 ~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
.+.+.+|+||.++|+.+ ++++|||||| ||.||+++|+++|+|.||+||+||+|+|||||++++.
T Consensus 269 ~~~~~~y~v~~~ll~~a-~~~i~mHcLP~~Rg~Ei~~~V~d~p~s~if~QaeNrl~~r~AlL~~~l~ 334 (335)
T PRK04523 269 RDQYQHFIVDERKMALT-NNGVFSHCLPLRRNVKVTDAVMDSPNCIAIDEAENRLHVQKAIMAALAS 334 (335)
T ss_pred HHhCcCCcCCHHHHhCC-CCCEEECCCCCCCCCeeCHHHhCCCcchHHHHHhccHHHHHHHHHHHHh
Confidence 56778899999999876 5899999999 9999999999999999999999999999999999874
No 9
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=99.87 E-value=5.4e-23 Score=170.56 Aligned_cols=119 Identities=25% Similarity=0.286 Sum_probs=90.5
Q ss_pred HHHhcCCCeEEeCCCCceeeecc-----------------cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCC
Q psy4400 15 IMTKAKSKMAVMHPLPRVFEIAP-----------------EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNT 77 (157)
Q Consensus 15 ~l~~a~~~~~vmHplPr~~Ei~~-----------------~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~e 77 (157)
.+...+.++.+.||- +.+.+. .+.+++..+ ++++|..+..+++.+. .. ....+
T Consensus 167 ~l~~~g~~v~~~~P~--~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a-~~~aDvvy~~~w~~~~----~~---~~~~~ 236 (304)
T TIGR00658 167 AGAKLGMDVVVATPE--GYEPDADIVKKAQEIAKENGGSVELTHDPVEA-VKGADVIYTDVWVSMG----EE---DKKEE 236 (304)
T ss_pred HHHHcCCEEEEECCc--hhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHH-hCCCCEEEEcCcccCc----cc---cccHH
Confidence 445566777776653 443322 244666666 4888888876654211 11 11245
Q ss_pred CCccCCccccCHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 78 PKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 78 y~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
|...+.+|+||.++|+.++++++|||||| ||+||+++|+++|+|.||+||+||+|+|||||.++++
T Consensus 237 ~~~~~~~y~l~~~~l~~~~~~~ivmHplP~~rg~Ei~~~V~d~p~s~~~~Qa~n~~~vr~AlL~~~l~ 304 (304)
T TIGR00658 237 RLKLFRPYQVNEELMELAKPEVIFMHCLPAHRGEEVTDEVIEGPHSIVFDQAENRLHAQKAVMVALLG 304 (304)
T ss_pred HHHHhcCCcCCHHHHhhcCCCCEEECCCCCCCCceeCHHHhCCCcchHHHHHhccHHHHHHHHHHHhC
Confidence 66667889999999999999999999999 7899999999999999999999999999999999875
No 10
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=99.87 E-value=5.1e-23 Score=169.24 Aligned_cols=124 Identities=28% Similarity=0.409 Sum_probs=91.7
Q ss_pred HHHHHhcCCCeEEeCCCC---ce-----eeecc----cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCc
Q psy4400 13 PKIMTKAKSKMAVMHPLP---RV-----FEIAP----EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKK 80 (157)
Q Consensus 13 ~e~l~~a~~~~~vmHplP---r~-----~Ei~~----~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~ 80 (157)
-+.|+..+.++.+ +.| +. .++.. .+..+...-+++++|..+.+|.|.+++. +..+|.+
T Consensus 177 ~~~L~~~ga~v~l--vsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~lRvQ~ER~~--------~~~~~s~ 246 (316)
T COG0540 177 IQALKRFGAEVYL--VSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYMLRVQKERFN--------DPEEYSK 246 (316)
T ss_pred HHHHHHcCCEEEE--ECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEeehhhHhhcC--------CccchHH
Confidence 4567777766666 555 11 12221 1223333324699999999999988864 3344554
Q ss_pred cCCccccCHHHHhc-cCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcCCC
Q psy4400 81 SCGLYIVTPKIMTK-AKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDS 146 (157)
Q Consensus 81 ~~~~~~l~~e~l~~-~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~~ 146 (157)
+.+.|.++...++. ++++++|||||| |++||+++|+++|+|.||+||+|||++|||||+.+++...
T Consensus 247 ~~~y~~~~~~~~~~~~k~~~ivmHP~PvnR~~EI~~~v~~~p~s~~f~Q~~nGV~vRMAlL~~~l~~~~ 315 (316)
T COG0540 247 VKEYYKLYGLTLERLAKPDAIVMHPLPVNRVVEIASEVDDTPQSRYFQQVKNGVAVRMALLELLLGGRE 315 (316)
T ss_pred HHHHHHHHHHHHHhhcCCCcEEECCCCccCCCcCchhhhcchHHHHHHHHHcCHHHHHHHHHHHhcccc
Confidence 44445555555555 999999999999 9999999999999999999999999999999999998653
No 11
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=99.86 E-value=5.9e-23 Score=172.45 Aligned_cols=102 Identities=30% Similarity=0.516 Sum_probs=82.3
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHh-ccCCCcEEeCCCCC-----ccccC
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMT-KAKSKMAVMHPLPR-----VFEIA 112 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~-~~~~~~~vmHplPR-----~~Ei~ 112 (157)
+.+++..+ +++||..+..|+|- +.+++.+++...++.|+||.++|+ .++++++||||||| |.||+
T Consensus 216 ~~~d~~ea-~~~aDvvyt~~~q~--------e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcLP~~~~~r~~Ei~ 286 (338)
T PRK08192 216 ITDQLEGN-LDKADILYLTRIQE--------ERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPLPRDSRAQANELD 286 (338)
T ss_pred EEcCHHHH-HccCCEEEEcCccc--------ccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCCCCCCCCCCcEeC
Confidence 34677777 49999988877532 222233445555677999999994 58999999999995 59999
Q ss_pred ccccCCCCchhHHHHhhcHHHHHHHHHHHhcCCCCCC
Q psy4400 113 PEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALT 149 (157)
Q Consensus 113 ~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~~~~~ 149 (157)
++|+++|+|.||+||+||+|+|||||+++++..+++.
T Consensus 287 ~~V~d~p~s~~f~QAeNrl~~r~AlL~~ll~~~~~~~ 323 (338)
T PRK08192 287 NDLNSHPNLAIFRQADNGLLIRMALFALTLGVDDQLE 323 (338)
T ss_pred HHHhCCccchHHHHHhcCHHHHHHHHHHHhCCchhhh
Confidence 9999999999999999999999999999998865554
No 12
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=99.86 E-value=1.8e-22 Score=173.62 Aligned_cols=118 Identities=25% Similarity=0.412 Sum_probs=91.5
Q ss_pred CCCeEEeCCCCceeeeccc-------------ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccc
Q psy4400 20 KSKMAVMHPLPRVFEIAPE-------------FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYI 86 (157)
Q Consensus 20 ~~~~~vmHplPr~~Ei~~~-------------V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~ 86 (157)
+.++.+ +.|.+++++.+ +.+++..+ +++||..+..|++.++. .. +++.+.+.+|+
T Consensus 268 G~~v~l--~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~ea-v~~ADVVYt~~~q~er~--------~~-~~~~~~~~~y~ 335 (429)
T PRK11891 268 GLKFTL--VSPPTLEMPAYIVEQISRNGHVIEQTDDLAAG-LRGADVVYATRIQKERF--------AD-ESFEGYTPDFQ 335 (429)
T ss_pred CCEEEE--ECCCccccCHHHHHHHHhcCCeEEEEcCHHHH-hCCCCEEEEcCchhhcc--------cC-HHHHHhccCCc
Confidence 456666 44446654333 35777777 49999999877643221 11 23345677899
Q ss_pred cCHHHHhc-cCCCcEEeCCCCCc-----cccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcCCCCCC
Q psy4400 87 VTPKIMTK-AKSKMAVMHPLPRV-----FEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALT 149 (157)
Q Consensus 87 l~~e~l~~-~~~~~~vmHplPR~-----~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~~~~~ 149 (157)
||.++|+. ++++++|||||||+ .||+++|+++|+|.||+||+||+|+|||||+++++..+.+.
T Consensus 336 vt~ell~~~ak~dai~MHcLPr~~R~~g~EIs~eV~d~p~S~if~QAeNrl~vr~AvL~~llg~~~~~~ 404 (429)
T PRK11891 336 INQALVDAVCKPDTLIMHPLPRDSRPGANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLLGVENLVQ 404 (429)
T ss_pred CCHHHHhCccCCCcEEECCCCCCCCCCCcEeCHHHhCCCcchHHHHHhccHHHHHHHHHHHhCCchhhh
Confidence 99999998 99999999999975 99999999999999999999999999999999998765544
No 13
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=99.85 E-value=2e-22 Score=166.99 Aligned_cols=117 Identities=26% Similarity=0.203 Sum_probs=87.0
Q ss_pred HHHhcCCCeEEeCCCCceeeeccc-----------------ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCC
Q psy4400 15 IMTKAKSKMAVMHPLPRVFEIAPE-----------------FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNT 77 (157)
Q Consensus 15 ~l~~a~~~~~vmHplPr~~Ei~~~-----------------V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~e 77 (157)
.+...+.++.+.+|- +.+.+.+ +.++. .+ +++||..+..|++. ++.. ....+
T Consensus 166 ~~~~~g~~v~~~~P~--~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a-~~~aDvvy~~~w~~----~~~~---~~~~~ 234 (302)
T PRK14805 166 GAAILGATMTVICPP--GHFPDGQIVAEAQELAAKSGGKLVLTSDI-EA-IEGHDAIYTDTWIS----MGDD---TPLAE 234 (302)
T ss_pred HHHHcCCEEEEECCc--hhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HH-HCCCCEEEeeceEe----CCCc---cccHH
Confidence 344556777775553 4443322 23443 34 48888888877632 1111 11233
Q ss_pred CCccCCccccCHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 78 PKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 78 y~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
+...+.+|+||.++|+.++++ +|||||| ||.||+++|+++|+|.||+||+||+|+|||||+++++
T Consensus 235 ~~~~~~~y~vt~~~l~~a~~~-~vmH~lP~~Rg~Ei~~~V~d~p~s~i~~QaeN~l~vr~All~~~l~ 301 (302)
T PRK14805 235 IKAKFAPYQVNKALMEKAGAT-FVMHCQPAHRGVEITSEVMDGEGSLILQQAENRMHAQNAVLVTLLS 301 (302)
T ss_pred HHHhccCCcCCHHHHhcCCCC-eEECCCCCCCCCeeCHHHhCCCcChHHHHHhccHHHHHHHHHHHhc
Confidence 456678899999999998877 9999999 9999999999999999999999999999999999986
No 14
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=99.85 E-value=1.5e-22 Score=169.78 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=79.3
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhcc-CCCcEEeCCCCC----------
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKA-KSKMAVMHPLPR---------- 107 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~-~~~~~vmHplPR---------- 107 (157)
+.+++..+ +++||..+..|++.+.. +. +...++.+.+.+|+||.++|+.+ +++++||||||+
T Consensus 215 ~~~d~~~a-~~~aDvvyt~~w~sm~~---~~---~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP~~~~~~~~~~~ 287 (334)
T PRK12562 215 LTEDIAAG-VKGADFIYTDVWVSMGE---PK---EKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLGK 287 (334)
T ss_pred EEcCHHHH-hCCCCEEEEcCcccccc---ch---hhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCCCCCcccccchh
Confidence 34667766 48999999888753331 11 01134455678899999999986 799999999994
Q ss_pred ----------ccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 108 ----------VFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 108 ----------~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
|.||+++|+++|+|.||+||+||+|+|||||.+++.
T Consensus 288 ~~~~~~~~~Rg~Eit~eV~d~p~S~if~QaeNrl~~~kAvl~~~~~ 333 (334)
T PRK12562 288 KMAKEFGLHGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLA 333 (334)
T ss_pred hhhhhccCCCCcEeCHHHhCCCcchHHHHHhhhHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999874
No 15
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=99.85 E-value=3.1e-22 Score=164.26 Aligned_cols=98 Identities=24% Similarity=0.307 Sum_probs=74.3
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCC--CccccCcccc
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFD 116 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~ 116 (157)
+.++|..++ +.||..+.--+. -+|+.. ...++....+.+||||.++|+.++++++|||||| ||.||+++|+
T Consensus 211 ~t~d~~eAv-~gADvvyTDvWv----SMGee~--e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~EVTdeV~ 283 (310)
T COG0078 211 LTEDPEEAV-KGADVVYTDVWV----SMGEEA--EAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVF 283 (310)
T ss_pred EecCHHHHh-CCCCEEEecCcc----cCcchh--hhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCCCCCCCCccCHHHh
Confidence 456676664 777765442221 011110 0112233445569999999999999999999999 9999999999
Q ss_pred CCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 117 SDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 117 ~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
++|+|++|+||+||+|+++|||.++++
T Consensus 284 dg~~svvfdeAENRlH~qKAvl~~~l~ 310 (310)
T COG0078 284 EGPASVVFDEAENRLHTQKAVLAALLG 310 (310)
T ss_pred CCCceeeeehhhhhHHHHHHHHHHhhC
Confidence 999999999999999999999999875
No 16
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=99.85 E-value=2e-22 Score=167.19 Aligned_cols=118 Identities=25% Similarity=0.304 Sum_probs=87.9
Q ss_pred HHHhcCCCeEEeCCCCceeeecc--------------cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCc
Q psy4400 15 IMTKAKSKMAVMHPLPRVFEIAP--------------EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKK 80 (157)
Q Consensus 15 ~l~~a~~~~~vmHplPr~~Ei~~--------------~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~ 80 (157)
.+...+.++.+.+| ++++.+. .+.+++..+ +++||..+..+++.+..- ....++.+
T Consensus 171 ~l~~~g~~v~~~~P--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a-~~~aDvvy~~~w~~~~~~-------~~~~~~~~ 240 (304)
T PRK00779 171 AAALLGFDLRVATP--KGYEPDPEIVEKIAKETGASIEVTHDPKEA-VKGADVVYTDVWVSMGQE-------AEAEERLK 240 (304)
T ss_pred HHHHcCCEEEEECC--cccCCCHHHHHHHHHHcCCeEEEEcCHHHH-hCCCCEEEecCccccccc-------hhHHHHHH
Confidence 34455666666554 3443322 234666666 488999888766532210 00122344
Q ss_pred cCCccccCHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHh
Q psy4400 81 SCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142 (157)
Q Consensus 81 ~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll 142 (157)
.+.+|+||.++|+.++++++|||||| ||.||+++|+++|+|.||+||+||+|+|||||++++
T Consensus 241 ~~~~y~v~~~~l~~~~~~~ivmHplP~~R~~Ei~~~V~~~p~s~~~~Qa~n~~~vrmAlL~~~l 304 (304)
T PRK00779 241 AFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSVVWDEAENRLHAQKALLAWLL 304 (304)
T ss_pred HhcccCCCHHHHHhcCCCeEEecCCCccCCCcccHHHhCCCcchHHHHHhccHHHHHHHHHHhC
Confidence 56789999999999999999999999 999999999999999999999999999999999774
No 17
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=99.85 E-value=2.2e-22 Score=168.67 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=77.7
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccC-CCcEEeCCCC-----------
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAK-SKMAVMHPLP----------- 106 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~-~~~~vmHplP----------- 106 (157)
+.+++..+ +++||..+..+++.+.. ... ...+..+.+.+|+||.++|+.++ ++++||||||
T Consensus 214 ~~~d~~ea-~~~aDvvy~~~w~~~~~----~~~--~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP~~r~~e~~~~~ 286 (332)
T PRK04284 214 ITDDIDEG-VKGSDVIYTDVWVSMGE----PDE--VWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLPSFHDLDTKVGK 286 (332)
T ss_pred EEcCHHHH-hCCCCEEEECCcccCcc----chh--hHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCCCCCCcccchhh
Confidence 45677766 48999988877653221 000 01233456788999999999986 5999999999
Q ss_pred --------CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 107 --------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 107 --------R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
||+||+++|+++|+|.||+||+||+|+|||||+++++
T Consensus 287 ~~~~~~~~rg~Ei~~~V~d~~~S~i~~QaeNrl~~~kAvl~~~~~ 331 (332)
T PRK04284 287 EIFEKYGLKEMEVTDEVFESKASVVFDEAENRMHTIKAVMVATLG 331 (332)
T ss_pred hhhhhcCCCCcEEcHHHhCCccchHHHHHhhhHHHHHHHHHHHhc
Confidence 4788999999999999999999999999999999985
No 18
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=99.84 E-value=4.1e-22 Score=167.21 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=78.2
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhcc-CCCcEEeCCCC-----------
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKA-KSKMAVMHPLP----------- 106 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~-~~~~~vmHplP----------- 106 (157)
+.+++..+ +++||..+..+++.+..-.. ..++..+.+.+|+||.++|+.+ +++++||||||
T Consensus 215 ~~~d~~ea-~~~aDvvytd~W~sm~~~~~------~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcLP~~~~~~~~~~~ 287 (336)
T PRK03515 215 LTEDIAEG-VKGADFIYTDVWVSMGEPKE------VWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLPAFHDDQTTLGK 287 (336)
T ss_pred EEcCHHHH-hCCCCEEEecCcccCcchhH------HHHHHHHhccCCccCHHHHhcccCCCCEEECCCCCCCCccccccc
Confidence 45677776 48999988876654331000 0112234567899999999985 79999999999
Q ss_pred ---------CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcC
Q psy4400 107 ---------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 144 (157)
Q Consensus 107 ---------R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~ 144 (157)
||.||+++|+++|+|.||+||+||+|+|||||.++++.
T Consensus 288 ~~~~~~~~~rg~EIs~eV~~~p~s~if~QaeNrl~~~kAvl~~~l~~ 334 (336)
T PRK03515 288 KMAEEYGLHGGMEVTDEVFESAHSIVFDQAENRLHTIKAVMVATLSK 334 (336)
T ss_pred chhcccccCCCCEeCHHHhCCCcchHHHHHhhhHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999999999864
No 19
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=99.84 E-value=4.7e-22 Score=166.82 Aligned_cols=97 Identities=25% Similarity=0.283 Sum_probs=78.2
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhcc-CCCcEEeCCCC-----------
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKA-KSKMAVMHPLP----------- 106 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~-~~~~~vmHplP----------- 106 (157)
+.+++..+ +++||..+..+++.+ +.. ....+++.+.+.+|+||.++|+.+ +++++||||||
T Consensus 215 ~~~d~~~a-~~~aDvVyt~~w~sm----~~~--~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP~~~~~~~~~~~ 287 (334)
T PRK01713 215 VTDDIDKA-VKGVDFVHTDVWVSM----GEP--LETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGR 287 (334)
T ss_pred EEcCHHHH-hCCCCEEEEcceeec----ccc--hhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCCCCCCccccccc
Confidence 45777776 489999888665432 111 011234556788899999999987 79999999999
Q ss_pred ----------CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHh
Q psy4400 107 ----------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142 (157)
Q Consensus 107 ----------R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll 142 (157)
||+||+++|+++|+|.+|+||+||+|+|||||.+++
T Consensus 288 ~~~~~~~~~~rg~Ei~~~V~d~~~s~i~~QaeNrl~~~kAvl~~~~ 333 (334)
T PRK01713 288 QIAEKYPELANGIEVTEDVFESPMNIAFEQAENRMHTIKAVMVASL 333 (334)
T ss_pred cchhhhcccCCCcEECHHHhCCCcccHHHHHhchHHHHHHHHHHHh
Confidence 478999999999999999999999999999999886
No 20
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=99.84 E-value=8.6e-22 Score=164.97 Aligned_cols=98 Identities=22% Similarity=0.253 Sum_probs=78.3
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHh-ccCCCcEEeCCCCC----------
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMT-KAKSKMAVMHPLPR---------- 107 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~-~~~~~~~vmHplPR---------- 107 (157)
+.+++..+ +++||..+..+++- ++... ...++.+.+.+|+||.++|+ .++++++|||||||
T Consensus 214 ~~~d~~ea-~~~aDvvyt~~w~~----~~~~~---~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~lP~~~~~~~~~~~ 285 (331)
T PRK02102 214 ITEDPEEA-VKGADVIYTDVWVS----MGEED---EWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLPAFHDTETKVGK 285 (331)
T ss_pred EEcCHHHH-hCCCCEEEEcCccc----Ccccc---chHHHHHhccCCcCCHHHHhhhcCCCCEEECCCCCCcccccchhh
Confidence 34666666 48888887755431 11110 12345667889999999999 58999999999997
Q ss_pred ---------ccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcC
Q psy4400 108 ---------VFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 144 (157)
Q Consensus 108 ---------~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~ 144 (157)
|.||+++|+++|+|.||+||+||+|+|||||++++|.
T Consensus 286 ~~~~~~~~rg~EI~~ev~d~p~s~if~Qa~Nrl~vr~AvL~~~l~~ 331 (331)
T PRK02102 286 EIAEKYGLKGLEVTDEVFESKYSIVFDEAENRMHTIKAVMVATLGD 331 (331)
T ss_pred hhhhhcCCCceEecHHHhCCCcchhHhHHhccHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999873
No 21
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=99.82 E-value=5.1e-21 Score=163.45 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=87.7
Q ss_pred HHhcCCCeEEeCCCCceeeec-----------------ccccCCchhhhhhhhhhhHHHHHHHHHHHhcccccccc----
Q psy4400 16 MTKAKSKMAVMHPLPRVFEIA-----------------PEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTY---- 74 (157)
Q Consensus 16 l~~a~~~~~vmHplPr~~Ei~-----------------~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~---- 74 (157)
+...+.++.+.+|- ++++. ..+.+++..+ +++||..+..+++-+............
T Consensus 214 ~~~lG~~v~~~~P~--~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~ea-v~~aDvVYtd~W~sm~~~~er~~~~~~~~~~ 290 (395)
T PRK07200 214 MTRFGMDVTLAHPE--GYDLMPEVVEVAKKNAKASGGSFRQVNSMEEA-FKDADIVYPKSWAPYKVMEERTELYRAGDHE 290 (395)
T ss_pred HHHcCCEEEEECCC--ccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHH-hCCCCEEEEcCeeecccccccccccccccch
Confidence 34557788886664 33332 2245677777 499999888876532211000000000
Q ss_pred --------CCCCCccCCccccCHHHHhccCCC-cEEeCCCC--C------ccccCccccCCCCchhHHHHhhcHHHHHHH
Q psy4400 75 --------SNTPKKSCGLYIVTPKIMTKAKSK-MAVMHPLP--R------VFEIAPEFDSDPRAAYFRQAEYGMYVRMAL 137 (157)
Q Consensus 75 --------~~ey~~~~~~~~l~~e~l~~~~~~-~~vmHplP--R------~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAl 137 (157)
..++.+.+.+|+||.++|+.++++ ++|||||| | |.||+++|+++|+|.||+||+||+|+||||
T Consensus 291 ~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcLPa~r~~~~~rg~EIt~eV~d~p~S~if~QAeNrlh~~~Av 370 (395)
T PRK07200 291 GIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCLPADISGVSCKEGEVTESVFDRYRIALYKEASWKPYIIAAM 370 (395)
T ss_pred hhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCCCCCCcccCCCCCEECHHHhCCCcchHHHHhcchHHHHHHH
Confidence 012345688999999999999885 99999999 3 999999999999999999999999999999
Q ss_pred HHH
Q psy4400 138 LTM 140 (157)
Q Consensus 138 l~~ 140 (157)
|+.
T Consensus 371 l~~ 373 (395)
T PRK07200 371 IFL 373 (395)
T ss_pred HHH
Confidence 997
No 22
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=99.82 E-value=3.6e-21 Score=162.60 Aligned_cols=121 Identities=20% Similarity=0.262 Sum_probs=87.5
Q ss_pred HHhcCCCeEEeCCCCceeeecc-----------------cccCCchhhhhhhhhhhHHHHHHHHHHHhcccc-cccc---
Q psy4400 16 MTKAKSKMAVMHPLPRVFEIAP-----------------EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDS-ALTY--- 74 (157)
Q Consensus 16 l~~a~~~~~vmHplPr~~Ei~~-----------------~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~-~~~~--- 74 (157)
+...+.++.+.||- ++++.+ .+.+++..+ +++||..+..+++.+... .++. .++.
T Consensus 197 ~~~~G~~v~~~~P~--~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea-~~~aDvvyt~~w~s~~~~-~~~~~~~~~~~~ 272 (357)
T TIGR03316 197 MTRFGMDVTLAHPE--GYHLLPEVIEVAKKNAAENGGKFNIVNSMDEA-FKDADIVYPKSWAPIAAM-EKRTELYTGSDT 272 (357)
T ss_pred HHHcCCEEEEECCC--cccCCHHHHHHHHHHHHHcCCeEEEEcCHHHH-hCCCCEEEECCeeccccc-cccchhcccchh
Confidence 44456777776654 443322 245777777 499999999887643200 0000 0000
Q ss_pred ---------CCCCCccCCccccCHHHHhccC-CCcEEeCCCC---Ccc-----ccCccccCCCCchhHHHHhhcHHHHHH
Q psy4400 75 ---------SNTPKKSCGLYIVTPKIMTKAK-SKMAVMHPLP---RVF-----EIAPEFDSDPRAAYFRQAEYGMYVRMA 136 (157)
Q Consensus 75 ---------~~ey~~~~~~~~l~~e~l~~~~-~~~~vmHplP---R~~-----Ei~~~v~~~~~s~~~~Qa~n~~~~rmA 136 (157)
..++.+.+.+|+||.++|+.++ ++++|||||| ||+ ||+++|+++|+|+||+||+||+|+|||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcLP~~~Rg~~~~~~Eit~~V~d~p~s~if~QAeNrl~~r~A 352 (357)
T TIGR03316 273 EGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCLPADIRGVSCEEGEVTEEVFDGYRSVIYKEASNKPYTIAA 352 (357)
T ss_pred hhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCCCCCccCcccccccccHHHhCCCccHHHHHHhhhHHHHHH
Confidence 0123346788999999999998 8999999999 677 999999999999999999999999999
Q ss_pred HHHH
Q psy4400 137 LLTM 140 (157)
Q Consensus 137 ll~~ 140 (157)
||++
T Consensus 353 lL~~ 356 (357)
T TIGR03316 353 MIAA 356 (357)
T ss_pred hhcc
Confidence 9974
No 23
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=99.81 E-value=1e-20 Score=166.10 Aligned_cols=101 Identities=25% Similarity=0.337 Sum_probs=75.5
Q ss_pred ccCCchhhhhhhhhh---hHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCC--Ccc-ccC
Q psy4400 39 FDSDPRAAYFRQAEY---GMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVF-EIA 112 (157)
Q Consensus 39 V~~~~~s~i~~QA~n---~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~-Ei~ 112 (157)
+.+++..+ +++||. -+.+|.|.+++ +.. ..+++...+.+|+||.++|+.++++++|||||| ||. |++
T Consensus 231 i~~d~~ea-v~~AD~tdvw~~~RiQ~Erm--g~~----~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcLPa~Rg~Ee~~ 303 (525)
T PRK13376 231 IFSSIEEY-LSQKDVAKIWYFTRLQLERM--GED----ILEKEHILRKAVTFRKEFLDKLPEGVKFYHPLPRHKVYPTIP 303 (525)
T ss_pred EEcCHHHH-hccCCccceEEEeccccccC--CCc----cchhHHHHhcCcEECHHHHhccCCCCEEECCCCCCCCCceeC
Confidence 34677776 489984 25567776664 211 012233345689999999999999999999999 777 555
Q ss_pred ccccCCCCchhHHHHhhcHHHHHHHHHHHhcCCC
Q psy4400 113 PEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDS 146 (157)
Q Consensus 113 ~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~~ 146 (157)
+.+++.|++.||+||+||+|+|||||+++++..+
T Consensus 304 ~vvD~~~~s~~f~QAeNgl~vrmAlL~~ll~~~~ 337 (525)
T PRK13376 304 TFLDTLPLNGWETQAINGYWVRIVLLSMLGGALE 337 (525)
T ss_pred HhhcCCcceeHHHHHhccHHHHHHHHHHHhCccc
Confidence 5555558999999999999999999999997653
No 24
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=99.79 E-value=5.1e-20 Score=153.26 Aligned_cols=121 Identities=19% Similarity=0.260 Sum_probs=85.2
Q ss_pred HHHhcCCCeEEeCCCC-c------eeee-----cccccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccC----CCC
Q psy4400 15 IMTKAKSKMAVMHPLP-R------VFEI-----APEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYS----NTP 78 (157)
Q Consensus 15 ~l~~a~~~~~vmHplP-r------~~Ei-----~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~----~ey 78 (157)
.+...+.++.+.+|-. . ..+. +..+.+++..++ ++||..+..+++-+... . .++. ++.
T Consensus 172 ~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av-~~aDvvy~d~w~~~~~~-~----~~~~~~~~~~r 245 (311)
T PRK14804 172 ITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAV-SHADYVYTDTWLDMEFF-N----DPSYADKKKQR 245 (311)
T ss_pred HHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHh-CCCCEEEeeeeEECccc-C----ccchHHHHHHH
Confidence 3445567777766621 0 0010 123456777774 88998888555421110 0 0111 122
Q ss_pred CccCCccccCHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 79 KKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 79 ~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
.+.+.+|+||.++|+. ++++|||||| ||.||+++|+++|+|+||+||+||+|+|||||+++++
T Consensus 246 ~~~~~~y~v~~elm~~--~~~~vmH~lP~~Rg~Ei~~~V~d~p~s~if~QaeN~l~~r~AvL~~~l~ 310 (311)
T PRK14804 246 MELMMPYQINSSLMEK--TNAKVMHDMPIHAGYEITREVVLSDRSIIFQQAENRLDAQKAVILKLLE 310 (311)
T ss_pred HHhccCCeECHHHHhC--CCCeEeCCCCCCCCceeCHHHhCCCcchHHHHHhcCHHHHHHHHHHHhc
Confidence 2457789999999974 5799999999 7999999999999999999999999999999999986
No 25
>KOG1504|consensus
Probab=99.75 E-value=1.8e-19 Score=145.05 Aligned_cols=67 Identities=31% Similarity=0.393 Sum_probs=62.7
Q ss_pred CCCccCCccccCHHHHhccCCCcEEeCCCCCc-cccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 77 TPKKSCGLYIVTPKIMTKAKSKMAVMHPLPRV-FEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 77 ey~~~~~~~~l~~e~l~~~~~~~~vmHplPR~-~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
...+.|.+||||.++++.|+++++|||||||. .|++++|+.+|+|++|.||+||+|++||+|..+|+
T Consensus 278 arlkaFqGfQV~~el~kvA~~~~~FmHCLPr~~eEVsdeVfy~~~SiVF~eAENR~~a~mavm~~ll~ 345 (346)
T KOG1504|consen 278 ARLKAFQGFQVTEELMKVAGPKAKFMHCLPRHPEEVSDEVFYGPYSIVFPEAENRKWAQMAVMLHLLG 345 (346)
T ss_pred HHHHhhcCceehHHHHhhhCCCceEeeccCCChhhccCceeeccceeecchhhhhHHHHHHHHHHHhc
Confidence 35667999999999999999999999999954 99999999999999999999999999999999886
No 26
>PLN02527 aspartate carbamoyltransferase
Probab=99.71 E-value=5.6e-18 Score=140.75 Aligned_cols=65 Identities=54% Similarity=0.873 Sum_probs=61.3
Q ss_pred ccCCCCcCHHHHHhcCCCeEEeCCCCceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhccc
Q psy4400 5 SCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 69 (157)
Q Consensus 5 ~~~~y~v~~e~l~~a~~~~~vmHplPr~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~ 69 (157)
++.+|+||.++|+.++++++||||||||.||+++|+++|++.||+||+|++++|||+|..+++.|
T Consensus 242 ~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei~~~V~d~p~s~i~~QaeNrl~~~~All~~ll~~~ 306 (306)
T PLN02527 242 ARGKYIVDKKVMDVLPKHAVVMHPLPRLDEITTDVDSDPRAAYFRQAKNGLFIRMALLKLLLGGW 306 (306)
T ss_pred hCCCceECHHHHhccCCCCEEECCCCCcccccHHHhCCCcchHHHHHhcCHHHHHHHHHHHhCCC
Confidence 34789999999999999999999999999999999999999999999999999999999988754
No 27
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=99.70 E-value=9.1e-18 Score=139.22 Aligned_cols=64 Identities=48% Similarity=0.727 Sum_probs=60.9
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCCceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplPr~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
+++.+|+||.++|+.++++++||||||||.||+++|+++|++.+|+||+||+++|||+|.++++
T Consensus 238 ~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~~V~d~p~s~i~~QaeNrl~~~~AvL~~ll~ 301 (301)
T TIGR00670 238 KYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDPSVDDTPHAKYFKQAFNGVPVRMALLSLLLG 301 (301)
T ss_pred HHhcCCeECHHHHhhcCCCCEEECCCCCCcccCHHHhCCccchHHHHHhccHHHHHHHHHHHhC
Confidence 5788999999999999999999999999999999999999999999999999999999998753
No 28
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=99.70 E-value=9.8e-18 Score=127.17 Aligned_cols=60 Identities=47% Similarity=0.723 Sum_probs=55.8
Q ss_pred cCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHH
Q psy4400 6 CGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMV 65 (157)
Q Consensus 6 ~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~l 65 (157)
+.+|+||.++|+.++++++|||||| ||.||+++|+++|++.+|+||+||+++|||+|.++
T Consensus 97 ~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~eV~~~~~s~~~~Qa~N~l~vrmAll~~l 158 (158)
T PF00185_consen 97 FKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDEVDDSPRSVYFEQAENRLHVRMALLALL 158 (158)
T ss_dssp HGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHHHHTSTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHhHhCCcccHHHHHHHhHHHHHHHHHHhC
Confidence 3459999999999999999999999 99999999999999999999999999999999864
No 29
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=99.67 E-value=3.6e-17 Score=135.85 Aligned_cols=65 Identities=37% Similarity=0.518 Sum_probs=62.2
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+++.+|+||.++|+.++++++|||||| ||.||+++|+++|++.||+||+|++++|||+|.++++.
T Consensus 237 ~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~V~d~p~s~~f~QAeNrl~~~~All~~~l~~ 303 (305)
T PRK00856 237 EYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASDVADGPQSVIFEQVTNGVAVRMAVLELLLGG 303 (305)
T ss_pred HHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHHHhCCCcchHHHHHhcCHHHHHHHHHHHhcC
Confidence 478899999999999999999999999 99999999999999999999999999999999998874
No 30
>PLN02342 ornithine carbamoyltransferase
Probab=99.66 E-value=6.8e-17 Score=136.24 Aligned_cols=64 Identities=28% Similarity=0.330 Sum_probs=61.0
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
+++.+|+||.++|+.++++++|||||| ||.||+.+|+++|++.||+||+||+++|||+|.++++
T Consensus 282 ~~~~~y~vt~ell~~ak~~aivMHpLP~~rg~EIs~eV~d~p~s~if~QaeNrl~vrmAlL~~llg 347 (348)
T PLN02342 282 KAFQGFQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVMEAPNSIVFPQAENRMHAQNAIMLHQLG 347 (348)
T ss_pred HhccCCccCHHHHhccCCCcEEeCCCCcCCCceecHHHhCCcccHHHHHHhccHHHHHHHHHHHhc
Confidence 577899999999999999999999999 7999999999999999999999999999999998874
No 31
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=99.66 E-value=7.2e-17 Score=134.00 Aligned_cols=64 Identities=31% Similarity=0.408 Sum_probs=60.4
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
+++.+|+||.++|+.++++++|||||| ||.||+++|+++|++.||+||+||+++|||+|.++++
T Consensus 239 ~~~~~y~l~~~~l~~~~~~~ivmHplP~~rg~Ei~~~V~d~p~s~~~~Qa~n~~~vr~AlL~~~l~ 304 (304)
T TIGR00658 239 KLFRPYQVNEELMELAKPEVIFMHCLPAHRGEEVTDEVIEGPHSIVFDQAENRLHAQKAVMVALLG 304 (304)
T ss_pred HHhcCCcCCHHHHhhcCCCCEEECCCCCCCCceeCHHHhCCCcchHHHHHhccHHHHHHHHHHHhC
Confidence 467899999999999999999999999 7899999999999999999999999999999998763
No 32
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=99.65 E-value=9.6e-17 Score=133.17 Aligned_cols=63 Identities=32% Similarity=0.352 Sum_probs=59.8
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
+++.+|+||.++|+.++++ +|||||| ||.||+++|+++|++.||+||+||+++|||+|.++++
T Consensus 237 ~~~~~y~vt~~~l~~a~~~-~vmH~lP~~Rg~Ei~~~V~d~p~s~i~~QaeN~l~vr~All~~~l~ 301 (302)
T PRK14805 237 AKFAPYQVNKALMEKAGAT-FVMHCQPAHRGVEITSEVMDGEGSLILQQAENRMHAQNAVLVTLLS 301 (302)
T ss_pred HhccCCcCCHHHHhcCCCC-eEECCCCCCCCCeeCHHHhCCCcChHHHHHhccHHHHHHHHHHHhc
Confidence 5778999999999999877 9999999 9999999999999999999999999999999998875
No 33
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=99.65 E-value=1.1e-16 Score=133.35 Aligned_cols=62 Identities=34% Similarity=0.557 Sum_probs=59.1
Q ss_pred CCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 7 GLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 7 ~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
..|+||.++|+.++++++|||||| ||.||+++|+++|++.||+||+||+++|||+|.++++.
T Consensus 242 ~~y~v~~~~l~~a~~~~i~mHcLP~~Rg~Ei~~~V~d~p~s~if~QaeNrl~~r~AlL~~~l~~ 305 (310)
T PRK13814 242 GSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSDVADNQQSVILQQVRNGVAMRMAVLELFLLR 305 (310)
T ss_pred CCcccCHHHHHhcCCCCEEECCCCCCCCCeeCHHHhCCCcchHHHHHhccHHHHHHHHHHHHhh
Confidence 359999999999999999999999 89999999999999999999999999999999998873
No 34
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=99.64 E-value=2.1e-16 Score=132.96 Aligned_cols=63 Identities=35% Similarity=0.448 Sum_probs=59.9
Q ss_pred CCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhccc
Q psy4400 7 GLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 69 (157)
Q Consensus 7 ~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~ 69 (157)
..|+||.++|+.++++++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++..
T Consensus 250 ~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis~~V~d~p~s~if~Qa~Nrl~vrmAlL~~ll~~~ 314 (338)
T PRK02255 250 PKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDEVMDSPRSICFDEAENRLTAIRALLVYFMNPY 314 (338)
T ss_pred CCceECHHHHhccCCCCEEeCCCCCcCCceecHHHhCCccchHHHHHhccHHHHHHHHHHHhccc
Confidence 359999999999999999999999 999999999999999999999999999999999998754
No 35
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=99.63 E-value=2.3e-16 Score=130.97 Aligned_cols=62 Identities=29% Similarity=0.385 Sum_probs=59.2
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMV 65 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~l 65 (157)
+++.+|+||.++|+.++++++|||||| ||.||+++|+++|++.||+||+||+++|||+|..+
T Consensus 240 ~~~~~y~v~~~~l~~~~~~~ivmHplP~~R~~Ei~~~V~~~p~s~~~~Qa~n~~~vrmAlL~~~ 303 (304)
T PRK00779 240 KAFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSVVWDEAENRLHAQKALLAWL 303 (304)
T ss_pred HHhcccCCCHHHHHhcCCCeEEecCCCccCCCcccHHHhCCCcchHHHHHhccHHHHHHHHHHh
Confidence 467899999999999999999999999 99999999999999999999999999999999865
No 36
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=99.60 E-value=5.7e-16 Score=130.19 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=58.7
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
+++.+|+||+++|+.+ ++++|||||| ||.||+++|+++|++.||+||+|++++|||+|..++.
T Consensus 270 ~~~~~y~v~~~ll~~a-~~~i~mHcLP~~Rg~Ei~~~V~d~p~s~if~QaeNrl~~r~AlL~~~l~ 334 (335)
T PRK04523 270 DQYQHFIVDERKMALT-NNGVFSHCLPLRRNVKVTDAVMDSPNCIAIDEAENRLHVQKAIMAALAS 334 (335)
T ss_pred HhCcCCcCCHHHHhCC-CCCEEECCCCCCCCCeeCHHHhCCCcchHHHHHhccHHHHHHHHHHHHh
Confidence 5678999999999877 4899999999 9999999999999999999999999999999998763
No 37
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=99.60 E-value=6.4e-16 Score=128.71 Aligned_cols=62 Identities=27% Similarity=0.371 Sum_probs=57.2
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
+++.+|+||.++|+. ++++|||||| ||.||+++|+++|++.||+||+||+++|||+|.++++
T Consensus 247 ~~~~~y~v~~elm~~--~~~~vmH~lP~~Rg~Ei~~~V~d~p~s~if~QaeN~l~~r~AvL~~~l~ 310 (311)
T PRK14804 247 ELMMPYQINSSLMEK--TNAKVMHDMPIHAGYEITREVVLSDRSIIFQQAENRLDAQKAVILKLLE 310 (311)
T ss_pred HhccCCeECHHHHhC--CCCeEeCCCCCCCCceeCHHHhCCCcchHHHHHhcCHHHHHHHHHHHhc
Confidence 467899999999974 5799999999 7999999999999999999999999999999998864
No 38
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=99.60 E-value=4.7e-16 Score=127.93 Aligned_cols=61 Identities=31% Similarity=0.415 Sum_probs=58.0
Q ss_pred CCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 7 GLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 7 ~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
.+||||+++|+.++++++|||||| ||.|++++|+++|+|.+|+||+|++|+++|+|..+++
T Consensus 248 ~~yQVn~~lm~~a~~~~ifmHCLPA~rG~EVTdeV~dg~~svvfdeAENRlH~qKAvl~~~l~ 310 (310)
T COG0078 248 PPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEGPASVVFDEAENRLHTQKAVLAALLG 310 (310)
T ss_pred CCceeCHHHHhhcCCCeEEEeCCCCCCCCccCHHHhCCCceeeeehhhhhHHHHHHHHHHhhC
Confidence 349999999999999999999999 9999999999999999999999999999999998763
No 39
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=99.60 E-value=9.2e-16 Score=128.79 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=59.5
Q ss_pred cccCCCCcCHHHHHhcC-CCeEEeCCCC-------------------ceeeecccccCCchhhhhhhhhhhHHHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMTKAK-SKMAVMHPLP-------------------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLT 63 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~-~~~~vmHplP-------------------r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~ 63 (157)
+++.+|+||+++|+.++ ++++|||||| ||.||+++|+++|+|.||+||+||+++|||+|.
T Consensus 248 ~~~~~y~v~~e~l~~a~~~~~ivmHplP~~r~~e~~~~~~~~~~~~~rg~Ei~~~V~d~~~S~i~~QaeNrl~~~kAvl~ 327 (332)
T PRK04284 248 KLLKPYQVNKEMMKKTGNPNAIFEHCLPSFHDLDTKVGKEIFEKYGLKEMEVTDEVFESKASVVFDEAENRMHTIKAVMV 327 (332)
T ss_pred HhccCCcCCHHHHhhcCCCCcEEECCCCCCCCcccchhhhhhhhcCCCCcEEcHHHhCCccchHHHHHhhhHHHHHHHHH
Confidence 57889999999999996 5999999999 478899999999999999999999999999999
Q ss_pred HHhc
Q psy4400 64 MVLG 67 (157)
Q Consensus 64 ~ll~ 67 (157)
++++
T Consensus 328 ~~~~ 331 (332)
T PRK04284 328 ATLG 331 (332)
T ss_pred HHhc
Confidence 8874
No 40
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=99.59 E-value=1.1e-15 Score=128.35 Aligned_cols=63 Identities=27% Similarity=0.331 Sum_probs=59.3
Q ss_pred cccCCCCcCHHHHHhc-CCCeEEeCCCCc--------------------eeeecccccCCchhhhhhhhhhhHHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMTKA-KSKMAVMHPLPR--------------------VFEIAPEFDSDPRAAYFRQAEYGMYVRMALL 62 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a-~~~~~vmHplPr--------------------~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll 62 (157)
+++.+|+||.++|+.+ +++++||||||+ |.||+++|+++|+|.||+||+||+++|||+|
T Consensus 249 ~~~~~y~v~~ell~~a~~~~~i~mHcLP~~~~~~~~~~~~~~~~~~~~Rg~Eit~eV~d~p~S~if~QaeNrl~~~kAvl 328 (334)
T PRK12562 249 ALLRGYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLGKKMAKEFGLHGGMEVTDEVFESPASIVFDQAENRMHTIKAVM 328 (334)
T ss_pred HhccCCcCCHHHHHhhcCCCCEEECCCCCCCcccccchhhhhhhccCCCCcEeCHHHhCCCcchHHHHHhhhHHHHHHHH
Confidence 4788999999999986 799999999994 8999999999999999999999999999999
Q ss_pred HHHh
Q psy4400 63 TMVL 66 (157)
Q Consensus 63 ~~ll 66 (157)
.+++
T Consensus 329 ~~~~ 332 (334)
T PRK12562 329 VATL 332 (334)
T ss_pred HHHh
Confidence 9875
No 41
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=99.59 E-value=1e-15 Score=128.36 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=60.1
Q ss_pred cccCCCCcCHHHHH-hcCCCeEEeCCCCc-------------------eeeecccccCCchhhhhhhhhhhHHHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMT-KAKSKMAVMHPLPR-------------------VFEIAPEFDSDPRAAYFRQAEYGMYVRMALLT 63 (157)
Q Consensus 4 ~~~~~y~v~~e~l~-~a~~~~~vmHplPr-------------------~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~ 63 (157)
+++.+|+||.++|+ .++++++||||||+ |.||+++|+++|++.||+||+||+++|||+|.
T Consensus 247 ~~~~~y~vt~ell~~~~~~d~ivmH~lP~~~~~~~~~~~~~~~~~~~rg~EI~~ev~d~p~s~if~Qa~Nrl~vr~AvL~ 326 (331)
T PRK02102 247 KLLKPYQVNMDLMKATGNPDVIFMHCLPAFHDTETKVGKEIAEKYGLKGLEVTDEVFESKYSIVFDEAENRMHTIKAVMV 326 (331)
T ss_pred HhccCCcCCHHHHhhhcCCCCEEECCCCCCcccccchhhhhhhhcCCCceEecHHHhCCCcchhHhHHhccHHHHHHHHH
Confidence 57889999999999 48999999999997 78999999999999999999999999999999
Q ss_pred HHhc
Q psy4400 64 MVLG 67 (157)
Q Consensus 64 ~ll~ 67 (157)
.+++
T Consensus 327 ~~l~ 330 (331)
T PRK02102 327 ATLG 330 (331)
T ss_pred HHhc
Confidence 8875
No 42
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=99.58 E-value=1.6e-15 Score=130.88 Aligned_cols=65 Identities=32% Similarity=0.602 Sum_probs=60.9
Q ss_pred cccCCCCcCHHHHHh-cCCCeEEeCCCCce-----eeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 4 LSCGLYIVTPKIMTK-AKSKMAVMHPLPRV-----FEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~-a~~~~~vmHplPr~-----~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+++..|+||.++|+. ++++++|||||||+ .||+++|+++|+|.||+||+|++++|||+|.++++.
T Consensus 329 ~~~~~y~vt~ell~~~ak~dai~MHcLPr~~R~~g~EIs~eV~d~p~S~if~QAeNrl~vr~AvL~~llg~ 399 (429)
T PRK11891 329 GYTPDFQINQALVDAVCKPDTLIMHPLPRDSRPGANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLLGV 399 (429)
T ss_pred HhccCCcCCHHHHhCccCCCcEEECCCCCCCCCCCcEeCHHHhCCCcchHHHHHhccHHHHHHHHHHHhCC
Confidence 467889999999999 99999999999974 899999999999999999999999999999999864
No 43
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=99.57 E-value=1.7e-15 Score=127.52 Aligned_cols=63 Identities=41% Similarity=0.729 Sum_probs=57.8
Q ss_pred cCCCCcCHHHHH-hcCCCeEEeCCCCc-----eeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 6 CGLYIVTPKIMT-KAKSKMAVMHPLPR-----VFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 6 ~~~y~v~~e~l~-~a~~~~~vmHplPr-----~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+..|+||.++|+ .++++++||||||+ |.||+.+|+++|++.||+||+||+++|||+|.++++.
T Consensus 250 ~~~y~v~~e~l~~~a~~~ai~mHcLP~~~~~r~~Ei~~~V~d~p~s~~f~QAeNrl~~r~AlL~~ll~~ 318 (338)
T PRK08192 250 RGKFRLNQSIYTQHCKSNTVIMHPLPRDSRAQANELDNDLNSHPNLAIFRQADNGLLIRMALFALTLGV 318 (338)
T ss_pred hhccccCHHHHHhhhCCCCEEECCCCCCCCCCCcEeCHHHhCCccchHHHHHhcCHHHHHHHHHHHhCC
Confidence 356999999995 58999999999995 5899999999999999999999999999999999864
No 44
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=99.57 E-value=2.1e-15 Score=126.77 Aligned_cols=64 Identities=23% Similarity=0.295 Sum_probs=59.7
Q ss_pred cccCCCCcCHHHHHhc-CCCeEEeCCCC--------------------ceeeecccccCCchhhhhhhhhhhHHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMTKA-KSKMAVMHPLP--------------------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALL 62 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a-~~~~~vmHplP--------------------r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll 62 (157)
+++.+|+||.++|+.+ +++++|||||| ||.||+++|+++|++.||+||+||+++|||+|
T Consensus 249 ~~~~~y~v~~~lm~~a~k~~~ivmHcLP~~~~~~~~~~~~~~~~~~~~rg~EIs~eV~~~p~s~if~QaeNrl~~~kAvl 328 (336)
T PRK03515 249 ALLRPYQVNSKMMQLTGNPQVKFLHCLPAFHDDQTTLGKKMAEEYGLHGGMEVTDEVFESAHSIVFDQAENRLHTIKAVM 328 (336)
T ss_pred HhccCCccCHHHHhcccCCCCEEECCCCCCCCcccccccchhcccccCCCCEeCHHHhCCCcchHHHHHhhhHHHHHHHH
Confidence 5788999999999985 79999999999 37899999999999999999999999999999
Q ss_pred HHHhc
Q psy4400 63 TMVLG 67 (157)
Q Consensus 63 ~~ll~ 67 (157)
.++++
T Consensus 329 ~~~l~ 333 (336)
T PRK03515 329 VATLS 333 (336)
T ss_pred HHHhC
Confidence 98875
No 45
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=99.57 E-value=2.4e-15 Score=126.43 Aligned_cols=63 Identities=30% Similarity=0.381 Sum_probs=58.8
Q ss_pred cccCCCCcCHHHHHhc-CCCeEEeCCCC---------------------ceeeecccccCCchhhhhhhhhhhHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMTKA-KSKMAVMHPLP---------------------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMAL 61 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a-~~~~~vmHplP---------------------r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAl 61 (157)
+++.+|+||.++|+.+ +++++|||||| ||.||+++|+++|+|.||+||+|++++|||+
T Consensus 249 ~~~~~y~v~~ell~~a~k~~aivmH~lP~~~~~~~~~~~~~~~~~~~~~rg~Ei~~~V~d~~~s~i~~QaeNrl~~~kAv 328 (334)
T PRK01713 249 KLLMPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGRQIAEKYPELANGIEVTEDVFESPMNIAFEQAENRMHTIKAV 328 (334)
T ss_pred HhccCCcCCHHHHhccCCCCCEEECCCCCCCCccccccccchhhhcccCCCcEECHHHhCCCcccHHHHHhchHHHHHHH
Confidence 4788999999999987 79999999999 4789999999999999999999999999999
Q ss_pred HHHHh
Q psy4400 62 LTMVL 66 (157)
Q Consensus 62 l~~ll 66 (157)
|.+++
T Consensus 329 l~~~~ 333 (334)
T PRK01713 329 MVASL 333 (334)
T ss_pred HHHHh
Confidence 99874
No 46
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=99.56 E-value=2.6e-15 Score=128.49 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=57.5
Q ss_pred cccCCCCcCHHHHHhcCCC-eEEeCCCC--c------eeeecccccCCchhhhhhhhhhhHHHHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMTKAKSK-MAVMHPLP--R------VFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTM 64 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~-~~vmHplP--r------~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ 64 (157)
+++.+|+||.++|+.++++ ++|||||| | |.||+++|+++|+|.||+||+|++++|||+|..
T Consensus 304 ~~~~~y~v~~elm~~a~~~~ai~MHcLPa~r~~~~~rg~EIt~eV~d~p~S~if~QAeNrlh~~~Avl~~ 373 (395)
T PRK07200 304 AQHKDWHCTEEMMKLTKDGKALYMHCLPADISGVSCKEGEVTESVFDRYRIALYKEASWKPYIIAAMIFL 373 (395)
T ss_pred HHccCCCcCHHHHhccCCCCcEEECCCCCCCcccCCCCCEECHHHhCCCcchHHHHhcchHHHHHHHHHH
Confidence 4689999999999999985 99999999 3 999999999999999999999999999999987
No 47
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=99.54 E-value=2.7e-15 Score=126.94 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=57.2
Q ss_pred cccCCCCcCHHHHHhcC-CCeEEeCCCC---cee-----eecccccCCchhhhhhhhhhhHHHHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMTKAK-SKMAVMHPLP---RVF-----EIAPEFDSDPRAAYFRQAEYGMYVRMALLTM 64 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~-~~~~vmHplP---r~~-----Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ 64 (157)
+++.+|+||.++|+.++ ++++|||||| ||. ||+++|+++|+|.||+||+|++++|||+|.+
T Consensus 287 ~~~~~y~vt~e~l~~a~~~~~i~MHcLP~~~Rg~~~~~~Eit~~V~d~p~s~if~QAeNrl~~r~AlL~~ 356 (357)
T TIGR03316 287 KKHKDWVCTEERMALTHDGEALYMHCLPADIRGVSCEEGEVTEEVFDGYRSVIYKEASNKPYTIAAMIAA 356 (357)
T ss_pred HHhcCCeECHHHHHhcCCCCcEEECCCCCCccCcccccccccHHHhCCCccHHHHHHhhhHHHHHHhhcc
Confidence 37789999999999998 8999999999 677 9999999999999999999999999999864
No 48
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=99.51 E-value=4.9e-15 Score=122.25 Aligned_cols=61 Identities=51% Similarity=0.798 Sum_probs=53.4
Q ss_pred cCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 6 CGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 6 ~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+..|+++.+.+ ++++++||||+| |++||+.+|+++|++.||+|+.||+++|||+|..+++.
T Consensus 251 ~~~~~~~~~~~--~k~~~ivmHP~PvnR~~EI~~~v~~~p~s~~f~Q~~nGV~vRMAlL~~~l~~ 313 (316)
T COG0540 251 YKLYGLTLERL--AKPDAIVMHPLPVNRVVEIASEVDDTPQSRYFQQVKNGVAVRMALLELLLGG 313 (316)
T ss_pred HHHHHHHHHhh--cCCCcEEECCCCccCCCcCchhhhcchHHHHHHHHHcCHHHHHHHHHHHhcc
Confidence 33445555554 999999999999 99999999999999999999999999999999998863
No 49
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=99.45 E-value=4.8e-14 Score=124.24 Aligned_cols=65 Identities=28% Similarity=0.442 Sum_probs=56.4
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceee-ecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFE-IAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~E-i~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+++.+|+||.++|+.++++++|||||| ||.| ++..+++++++.||+||+||+++|||+|.++++.
T Consensus 268 ~~~~~y~vt~elm~~ak~~ai~MHcLPa~Rg~Ee~~~vvD~~~~s~~f~QAeNgl~vrmAlL~~ll~~ 335 (525)
T PRK13376 268 ILRKAVTFRKEFLDKLPEGVKFYHPLPRHKVYPTIPTFLDTLPLNGWETQAINGYWVRIVLLSMLGGA 335 (525)
T ss_pred HHhcCcEECHHHHhccCCCCEEECCCCCCCCCceeCHhhcCCcceeHHHHHhccHHHHHHHHHHHhCc
Confidence 356799999999999999999999999 7874 5555556689999999999999999999998864
No 50
>KOG1504|consensus
Probab=99.44 E-value=5.6e-14 Score=113.55 Aligned_cols=65 Identities=31% Similarity=0.375 Sum_probs=60.5
Q ss_pred ccccCCCCcCHHHHHhcCCCeEEeCCCCce-eeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 3 NLSCGLYIVTPKIMTKAKSKMAVMHPLPRV-FEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 3 ~~~~~~y~v~~e~l~~a~~~~~vmHplPr~-~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
.+.|+|||||+++++.|+++++|||||||. .|++++|+++|+|.+|.||+|++|..||++..+++
T Consensus 280 lkaFqGfQV~~el~kvA~~~~~FmHCLPr~~eEVsdeVfy~~~SiVF~eAENR~~a~mavm~~ll~ 345 (346)
T KOG1504|consen 280 LKAFQGFQVTEELMKVAGPKAKFMHCLPRHPEEVSDEVFYGPYSIVFPEAENRKWAQMAVMLHLLG 345 (346)
T ss_pred HHhhcCceehHHHHhhhCCCceEeeccCCChhhccCceeeccceeecchhhhhHHHHHHHHHHHhc
Confidence 367999999999999999999999999954 69999999999999999999999999999988775
No 51
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=27.60 E-value=51 Score=22.59 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=23.9
Q ss_pred CCCchhHHHHhhcHHHHHHHHHHHh-cCCCCC
Q psy4400 118 DPRAAYFRQAEYGMYVRMALLTMVL-GRDSAL 148 (157)
Q Consensus 118 ~~~s~~~~Qa~n~~~~rmAll~~ll-~~~~~~ 148 (157)
+-+|.+|+|+.-++.-|-+++..|+ +...++
T Consensus 40 ~~QskFFe~~A~~~tkR~~l~~fl~l~g~~~~ 71 (90)
T PLN00017 40 PLQSKFFETFAAPFTKRGLLLKFLALGGGSAL 71 (90)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHcCcceE
Confidence 3478999999999999999998764 343333
No 52
>KOG3281|consensus
Probab=22.94 E-value=53 Score=27.02 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=17.6
Q ss_pred HHHHhccCCCcEEeCCCCCcc
Q psy4400 89 PKIMTKAKSKMAVMHPLPRVF 109 (157)
Q Consensus 89 ~e~l~~~~~~~~vmHplPR~~ 109 (157)
..+|++|+..-+|+-||||++
T Consensus 143 d~mmsrAr~~P~FvlpLPR~e 163 (273)
T KOG3281|consen 143 DKMMSRARMYPYFVLPLPRGE 163 (273)
T ss_pred HHHHHHhhcCCeeeecccccc
Confidence 456788999999999999863
Done!