Query psy4400
Match_columns 157
No_of_seqs 240 out of 2313
Neff 7.0
Searched_HMMs 29240
Date Sat Aug 17 00:35:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pg5_A Aspartate carbamoyltran 99.9 6.3E-27 2.1E-31 192.4 2.5 113 20-143 176-298 (299)
2 1ml4_A Aspartate transcarbamoy 99.9 3.8E-27 1.3E-31 194.4 0.1 97 39-144 211-307 (308)
3 3csu_A Protein (aspartate carb 99.9 1.6E-26 5.5E-31 190.8 3.7 118 16-145 176-307 (310)
4 4ekn_B Aspartate carbamoyltran 99.9 2.2E-26 7.4E-31 189.8 0.0 96 39-145 208-303 (306)
5 4ep1_A Otcase, ornithine carba 99.9 6.1E-26 2.1E-30 189.2 0.3 102 38-148 236-339 (340)
6 3gd5_A Otcase, ornithine carba 99.9 1.5E-25 5.3E-30 185.8 1.4 101 38-146 214-316 (323)
7 2i6u_A Otcase, ornithine carba 99.9 2.8E-25 9.7E-30 183.2 2.9 98 39-144 207-306 (307)
8 3r7f_A Aspartate carbamoyltran 99.9 9.3E-25 3.2E-29 179.8 5.9 124 15-149 168-296 (304)
9 4f2g_A Otcase 1, ornithine car 99.9 5.5E-25 1.9E-29 181.6 3.9 120 16-145 174-306 (309)
10 2ef0_A Ornithine carbamoyltran 99.9 1.8E-25 6.1E-30 183.9 0.8 118 16-143 174-301 (301)
11 1pvv_A Otcase, ornithine carba 99.9 1.9E-25 6.4E-30 184.8 0.0 99 39-145 213-313 (315)
12 1vlv_A Otcase, ornithine carba 99.9 6.1E-25 2.1E-29 182.3 1.8 117 16-142 188-324 (325)
13 3grf_A Ornithine carbamoyltran 99.9 1.4E-24 4.7E-29 180.5 1.9 101 38-145 223-325 (328)
14 1js1_X Transcarbamylase; alpha 99.9 5.6E-24 1.9E-28 176.4 3.0 119 15-145 191-317 (324)
15 3tpf_A Otcase, ornithine carba 99.9 6.7E-25 2.3E-29 180.9 -2.6 99 39-145 204-304 (307)
16 3kzn_A Aotcase, N-acetylornith 99.9 1.7E-24 5.7E-29 182.0 -0.6 125 14-145 214-357 (359)
17 1zq6_A Otcase, ornithine carba 99.9 1.5E-24 5.1E-29 181.9 -1.0 123 15-144 215-356 (359)
18 4a8t_A Putrescine carbamoyltra 99.9 1.7E-23 5.9E-28 174.5 5.0 116 15-144 194-333 (339)
19 3sds_A Ornithine carbamoyltran 99.9 1.8E-23 6.2E-28 175.1 3.7 100 38-148 247-352 (353)
20 4a8p_A Putrescine carbamoyltra 99.9 2E-23 6.9E-28 174.9 3.7 116 15-144 172-311 (355)
21 3d6n_B Aspartate carbamoyltran 99.9 1.2E-23 4.2E-28 172.2 1.7 117 15-143 167-291 (291)
22 1dxh_A Ornithine carbamoyltran 99.9 5.4E-24 1.9E-28 177.3 -0.8 98 39-144 214-334 (335)
23 4h31_A Otcase, ornithine carba 99.9 3.4E-24 1.2E-28 180.0 -2.7 99 39-144 240-358 (358)
24 1duv_G Octase-1, ornithine tra 99.9 3.7E-23 1.3E-27 172.1 3.5 97 39-143 214-332 (333)
25 2w37_A Ornithine carbamoyltran 99.9 1.5E-23 5.1E-28 175.8 -1.2 98 39-145 235-354 (359)
26 1oth_A Protein (ornithine tran 99.9 1.6E-22 5.6E-27 167.6 4.5 97 38-145 212-312 (321)
27 4amu_A Ornithine carbamoyltran 99.9 1.1E-22 3.8E-27 170.9 2.9 96 38-144 240-365 (365)
28 3q98_A Transcarbamylase; rossm 99.8 3.9E-21 1.3E-25 163.2 2.1 65 79-143 307-380 (399)
29 2yfk_A Aspartate/ornithine car 99.8 2.1E-21 7.1E-26 165.6 -1.0 121 16-142 215-376 (418)
30 1pg5_A Aspartate carbamoyltran 99.7 1.5E-18 5.2E-23 142.6 5.3 63 5-67 236-298 (299)
31 1ml4_A Aspartate transcarbamoy 99.7 1.6E-18 5.4E-23 143.0 4.7 63 5-67 244-306 (308)
32 3csu_A Protein (aspartate carb 99.7 1.9E-18 6.5E-23 142.5 4.0 64 5-68 243-306 (310)
33 2i6u_A Otcase, ornithine carba 99.7 3.7E-18 1.3E-22 140.7 4.6 64 4-67 240-305 (307)
34 3r7f_A Aspartate carbamoyltran 99.7 4E-18 1.4E-22 140.3 3.9 65 4-68 225-291 (304)
35 1pvv_A Otcase, ornithine carba 99.7 3.5E-18 1.2E-22 141.3 3.5 65 4-68 246-312 (315)
36 4f2g_A Otcase 1, ornithine car 99.7 5.1E-18 1.8E-22 139.9 4.3 65 4-68 239-305 (309)
37 2ef0_A Ornithine carbamoyltran 99.7 4.2E-18 1.4E-22 140.0 3.7 63 4-66 236-300 (301)
38 3gd5_A Otcase, ornithine carba 99.7 3.8E-18 1.3E-22 141.4 3.4 66 4-69 248-315 (323)
39 3tpf_A Otcase, ornithine carba 99.7 5.2E-18 1.8E-22 139.8 3.0 65 4-68 237-303 (307)
40 3grf_A Ornithine carbamoyltran 99.7 6.8E-18 2.3E-22 140.2 3.3 65 4-68 258-324 (328)
41 4ep1_A Otcase, ornithine carba 99.7 7.5E-18 2.6E-22 140.4 3.5 66 4-69 269-336 (340)
42 1vlv_A Otcase, ornithine carba 99.7 9.9E-18 3.4E-22 139.0 3.4 63 4-66 259-324 (325)
43 4ekn_B Aspartate carbamoyltran 99.7 1.4E-17 4.7E-22 137.2 3.3 62 5-68 241-302 (306)
44 4a8t_A Putrescine carbamoyltra 99.7 1.8E-17 6.1E-22 138.2 3.8 62 6-67 268-332 (339)
45 4a8p_A Putrescine carbamoyltra 99.7 2.2E-17 7.4E-22 138.3 3.8 63 6-68 246-311 (355)
46 1zq6_A Otcase, ornithine carba 99.7 3.4E-17 1.2E-21 137.3 4.3 64 4-68 291-356 (359)
47 1oth_A Protein (ornithine tran 99.7 6.5E-17 2.2E-21 134.0 5.9 64 5-68 247-311 (321)
48 1duv_G Octase-1, ornithine tra 99.7 3.3E-17 1.1E-21 136.3 4.1 64 4-67 248-332 (333)
49 1dxh_A Ornithine carbamoyltran 99.7 3.7E-17 1.3E-21 136.1 4.1 64 4-67 248-333 (335)
50 3kzn_A Aotcase, N-acetylornith 99.7 4.7E-17 1.6E-21 136.6 4.3 64 4-68 291-356 (359)
51 4h31_A Otcase, ornithine carba 99.6 5.6E-17 1.9E-21 136.1 4.1 64 4-67 274-357 (358)
52 4amu_A Ornithine carbamoyltran 99.6 6.7E-17 2.3E-21 135.8 4.1 64 4-67 275-364 (365)
53 2w37_A Ornithine carbamoyltran 99.6 6.9E-17 2.4E-21 135.4 3.3 65 4-68 267-353 (359)
54 3sds_A Ornithine carbamoyltran 99.6 1.7E-16 5.9E-21 132.9 5.1 64 5-68 282-348 (353)
55 1js1_X Transcarbamylase; alpha 99.6 1.5E-16 5.2E-21 131.8 4.4 62 7-69 254-317 (324)
56 3d6n_B Aspartate carbamoyltran 99.6 1.2E-16 4.2E-21 130.7 2.3 61 4-67 229-291 (291)
57 3q98_A Transcarbamylase; rossm 99.6 2.8E-16 9.6E-21 133.4 3.1 63 4-66 308-379 (399)
58 2yfk_A Aspartate/ornithine car 99.6 7.8E-16 2.7E-20 131.3 3.4 63 4-66 305-376 (418)
No 1
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=99.92 E-value=6.3e-27 Score=192.43 Aligned_cols=113 Identities=28% Similarity=0.445 Sum_probs=92.8
Q ss_pred CCCeEEeCCCCceeeecc----------cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCH
Q psy4400 20 KSKMAVMHPLPRVFEIAP----------EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTP 89 (157)
Q Consensus 20 ~~~~~vmHplPr~~Ei~~----------~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~ 89 (157)
+.++.+.+ |.+++.+. .+.+++..++ ++||..+..|++.++ +++.++|.+.+.+|+||.
T Consensus 176 g~~v~~~~--P~~~~~~~~~~~~~g~~~~~~~d~~eav-~~aDvvyt~~~q~er--------~~~~~~~~~~~~~y~v~~ 244 (299)
T 1pg5_A 176 PKLVYLIS--PQLLRARKEILDELNYPVKEVENPFEVI-NEVDVLYVTRIQKER--------FVDEMEYEKIKGSYIVSL 244 (299)
T ss_dssp CSEEEEEC--CGGGCCCHHHHTTCCSCEEEESCGGGTG-GGCSEEEEECCCSTT--------SSCHHHHHHHGGGGSBCH
T ss_pred CCEEEEEC--CchhcCCHHHHHHcCCeEEEeCCHHHHh-cCCCEEEeCCccccc--------ccCHHHHHHhhcCcccCH
Confidence 56666644 44554432 2457787774 999999888774332 344567877788899999
Q ss_pred HHHhccCCCcEEeCCCCCccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 90 KIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 90 e~l~~~~~~~~vmHplPR~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
++|+.++++++||||||||.||+++|+++|+|.||+||+||+|+|||||+++++
T Consensus 245 ~~l~~a~~~ai~mH~lPrg~EI~~eV~d~p~s~vf~QaeNrl~~r~AlL~~ll~ 298 (299)
T 1pg5_A 245 DLANKMKKDSIILHPLPRVNEIDRKVDKTTKAKYFEQASYGVPVRMSILTKIYG 298 (299)
T ss_dssp HHHHTSCTTCEEECCSCCSSSBCGGGGGSTTBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCEEECCCCCCCccCHHHhCCcccHHHHHHHhCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999986
No 2
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=99.92 E-value=3.8e-27 Score=194.40 Aligned_cols=97 Identities=37% Similarity=0.488 Sum_probs=85.1
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCCCccccCccccCC
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSD 118 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplPR~~Ei~~~v~~~ 118 (157)
+.+++..++ ++||..+..|++.++ +++.++|.+.+.+|+||.++|+.++++++||||||||.||+++|+++
T Consensus 211 ~~~d~~eav-~~aDvvyt~~~q~er--------~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~~eV~d~ 281 (308)
T 1ml4_A 211 ETTTLEDVI-GKLDVLYVTRIQKER--------FPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRVDEIHPEVDNT 281 (308)
T ss_dssp EESCTHHHH-TTCSEEEECCCCGGG--------SSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSCCSSSBCGGGGGS
T ss_pred EEcCHHHHh-cCCCEEEECCccccc--------cCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCCCCCCeecHHHhCC
Confidence 457788774 999999988875433 24556788878899999999999999999999999999999999999
Q ss_pred CCchhHHHHhhcHHHHHHHHHHHhcC
Q psy4400 119 PRAAYFRQAEYGMYVRMALLTMVLGR 144 (157)
Q Consensus 119 ~~s~~~~Qa~n~~~~rmAll~~ll~~ 144 (157)
|+|.||+||+||+|+|||||+++++.
T Consensus 282 p~s~if~QaeNrl~~r~AlL~~ll~~ 307 (308)
T 1ml4_A 282 KHAIYFRQVFNGVPVRMALLALVLGV 307 (308)
T ss_dssp TTBCHHHHHHTHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999999999999999999864
No 3
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=99.92 E-value=1.6e-26 Score=190.79 Aligned_cols=118 Identities=29% Similarity=0.470 Sum_probs=85.1
Q ss_pred HHhc-CCCeEEeCCCCceeeecc-------------cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCcc
Q psy4400 16 MTKA-KSKMAVMHPLPRVFEIAP-------------EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKS 81 (157)
Q Consensus 16 l~~a-~~~~~vmHplPr~~Ei~~-------------~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~ 81 (157)
+... +.++.+.+| .+++.+. .+.+++..++ ++||..+..|+|.++ + +.++|.+.
T Consensus 176 ~~~~~g~~v~~~~P--~~~~~~~~~~~~~~~~g~~~~~~~d~~eav-~~aDvvyt~~~q~er--------~-~~~~~~~~ 243 (310)
T 3csu_A 176 LAKFDGNRFYFIAP--DALAMPQYILDMLDEKGIAWSLHSSIEEVM-AEVDILYMTRVQKER--------L-DPSEYANV 243 (310)
T ss_dssp HHTSSSCEEEEECC--GGGCCCHHHHHHHHHTTCCEEECSCGGGTT-TTCSEEEECC-----------------------
T ss_pred HHhCCCCEEEEECC--cccccCHHHHHHHHHcCCeEEEEcCHHHHh-cCCCEEEECCccccc--------c-CHHHHHHH
Confidence 3344 666666444 3544332 3457788774 999999998886544 1 35778888
Q ss_pred CCccccCHHHHhccCCCcEEeCCCCCccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 82 CGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 82 ~~~~~l~~e~l~~~~~~~~vmHplPR~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
+.+|+||.++|+.++++++||||||||.||+++|+++|+|.||+||+||+|+|||||+++++..
T Consensus 244 ~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~~eV~d~p~s~vf~QaeNrl~~r~AlL~~ll~~~ 307 (310)
T 3csu_A 244 KAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRD 307 (310)
T ss_dssp ---CCBCGGGGTTCCTTCEEECCSCCSSSBCHHHHTSTTBCHHHHHHTHHHHHHHHHHHHHSSC
T ss_pred hhccCCCHHHHhhcCCCCEEECCCCCCCeecHHHhCCCccHHHHHHHhCHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999999999999999999999999999999999999754
No 4
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=99.91 E-value=2.2e-26 Score=189.77 Aligned_cols=96 Identities=29% Similarity=0.413 Sum_probs=83.1
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCCCccccCccccCC
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSD 118 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplPR~~Ei~~~v~~~ 118 (157)
+.+++..++ ++||..+..|+|.+ ++++.++|.+.+.+|+||.++|+. ++++||||||||.||+++|+++
T Consensus 208 ~~~d~~eav-~~aDvvy~~~~q~e--------r~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~lPRg~EI~~eV~d~ 276 (306)
T 4ekn_B 208 EKESLDDLD-DDIDVLYVTRIQKE--------RFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPLPRVDEIDYDVDDL 276 (306)
T ss_dssp EESCGGGCC-TTCSEEEECCCCGG--------GCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCSCCSSSBCGGGTTS
T ss_pred EEcCHHHHh-cCCCEEEeCCcccc--------cCCCHHHHHHhccCcEECHHHHcC--CCCEEECCCCCCCeecHhHhCC
Confidence 467888774 99999888766432 234567788888899999999987 8999999999999999999999
Q ss_pred CCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 119 PRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 119 ~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
|+|+||+||+||+|+|||||+++++..
T Consensus 277 p~s~vf~QaeNrl~~r~AlL~~ll~~~ 303 (306)
T 4ekn_B 277 PQAKYFKQSFYGIPVRMAILKKLIEDN 303 (306)
T ss_dssp TTBCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHhcCHHHHHHHHHHHhccc
Confidence 999999999999999999999999753
No 5
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=99.91 E-value=6.1e-26 Score=189.17 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=82.0
Q ss_pred cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCC--CccccCccc
Q psy4400 38 EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEF 115 (157)
Q Consensus 38 ~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v 115 (157)
.+.+++..++ ++||..+..|++.+.. . ++.++.+.|.+|+||.++|+.++++++|||||| ||+||+++|
T Consensus 236 ~~~~d~~eav-~~aDVvyt~~w~smg~----e----~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~eV 306 (340)
T 4ep1_A 236 EILHNPELAV-NEADFIYTDVWMSMGQ----E----GEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEI 306 (340)
T ss_dssp EEESCHHHHH-TTCSEEEECCC--------------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHH
T ss_pred EEECCHHHHh-CCCCEEEecCccCCCC----C----chHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeCHHH
Confidence 3457787774 9999999888875432 1 112344567789999999999999999999999 999999999
Q ss_pred cCCCCchhHHHHhhcHHHHHHHHHHHhcCCCCC
Q psy4400 116 DSDPRAAYFRQAEYGMYVRMALLTMVLGRDSAL 148 (157)
Q Consensus 116 ~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~~~~ 148 (157)
+++|+|+||+||+||+|+|||||+++++..+++
T Consensus 307 ~d~p~S~if~QaeNrl~~rmAlL~~ll~~~~~~ 339 (340)
T 4ep1_A 307 IDGPQSIVFEQAGNRLHAQKALLVSLFKNVEEL 339 (340)
T ss_dssp HTSTTBCHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred hCCCchhHHHHHhcCHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999987664
No 6
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=99.90 E-value=1.5e-25 Score=185.76 Aligned_cols=101 Identities=22% Similarity=0.259 Sum_probs=82.1
Q ss_pred cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCC--CccccCccc
Q psy4400 38 EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEF 115 (157)
Q Consensus 38 ~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v 115 (157)
.+.+++..++ ++||..+..|++.+.. . ...+++.+.+.+|+||.++|+.+++|++|||||| ||+||+++|
T Consensus 214 ~~~~d~~eav-~~aDvvyt~~wqs~g~----~---~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~~eV 285 (323)
T 3gd5_A 214 QILRDPFEAA-RGAHILYTDVWTSMGQ----E---AETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEV 285 (323)
T ss_dssp EEESCHHHHH-TTCSEEEECCCC----------------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHH
T ss_pred EEECCHHHHh-cCCCEEEEeceecCCC----c---ccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeCHHH
Confidence 3567788774 9999999988875432 1 0124567778899999999999999999999999 999999999
Q ss_pred cCCCCchhHHHHhhcHHHHHHHHHHHhcCCC
Q psy4400 116 DSDPRAAYFRQAEYGMYVRMALLTMVLGRDS 146 (157)
Q Consensus 116 ~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~~ 146 (157)
+++|+|.||+||+||+|+|||||+++++..+
T Consensus 286 ~d~p~S~if~QaeNrl~~r~AlL~~ll~~~~ 316 (323)
T 3gd5_A 286 MEGPRSRIWDEAENRLHAQKAVLAALMGGRE 316 (323)
T ss_dssp HHSTTBCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hCCCchhHHHHHhccHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999998653
No 7
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=99.90 E-value=2.8e-25 Score=183.17 Aligned_cols=98 Identities=24% Similarity=0.291 Sum_probs=82.8
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCC--CccccCcccc
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFD 116 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~ 116 (157)
+.+++..++ ++||..+..|++.+ ++.. ...++.+.+.+|+||.++|+.++++++|||||| ||.||+++|+
T Consensus 207 ~~~d~~eav-~~aDvvy~~~w~sm----g~~~---~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~eV~ 278 (307)
T 2i6u_A 207 VTADAHAAA-AGADVLVTDTWTSM----GQEN---DGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDAVM 278 (307)
T ss_dssp EESCHHHHH-TTCSEEEECCSSCT----TCTT---SCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHHHH
T ss_pred EEECHHHHh-cCCCEEEecceecC----Cccc---chHHHHHHHhhcCCCHHHHhhcCCCcEEECCCCCCCCcccCHhHh
Confidence 467777774 99999888777532 3211 135566778899999999999999999999999 8999999999
Q ss_pred CCCCchhHHHHhhcHHHHHHHHHHHhcC
Q psy4400 117 SDPRAAYFRQAEYGMYVRMALLTMVLGR 144 (157)
Q Consensus 117 ~~~~s~~~~Qa~n~~~~rmAll~~ll~~ 144 (157)
++|+|.||+||+||+|+|||||+++++.
T Consensus 279 d~p~s~if~QaeN~l~~r~AlL~~ll~~ 306 (307)
T 2i6u_A 279 DGPASAVWDEAENRLHAQKALLVWLLER 306 (307)
T ss_dssp TSTTBCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHHHhcCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999863
No 8
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=99.90 E-value=9.3e-25 Score=179.80 Aligned_cols=124 Identities=18% Similarity=0.261 Sum_probs=91.8
Q ss_pred HHHhcCCCeEEeCCCCceeeecc---cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHH
Q psy4400 15 IMTKAKSKMAVMHPLPRVFEIAP---EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKI 91 (157)
Q Consensus 15 ~l~~a~~~~~vmHplPr~~Ei~~---~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~ 91 (157)
.+...+.++.+.+| .+++.+. .+..++..+ +++||..+..|++.+ +..+..++.+.+.+|+||.++
T Consensus 168 ~~~~~G~~v~~~~P--~~~~~~~~~~g~~~d~~ea-v~~aDvvyt~~~q~e--------r~~~~~~~~~~~~~y~v~~~~ 236 (304)
T 3r7f_A 168 VLTRLGARVLFSGP--SEWQDEENTFGTYVSMDEA-VESSDVVMLLRIQNE--------RHQSAVSQEGYLNKYGLTVER 236 (304)
T ss_dssp HHHHTTCEEEEESC--GGGSCTTCSSCEECCHHHH-HHHCSEEEECCCCTT--------TCCSSCCSTTHHHHHSBCHHH
T ss_pred HHHHcCCEEEEECC--CccCcchhhcCccCCHHHH-hCCCCEEEeccchhh--------ccccchhHHHHhCCCccCHHH
Confidence 34455677777554 3554421 245677776 489999888765322 222222444556789999999
Q ss_pred HhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcCCCCCC
Q psy4400 92 MTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALT 149 (157)
Q Consensus 92 l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~~~~~ 149 (157)
|+.++++++|||||| ||+||+++|+++|+|+||+||+||+|+|||||+++++.....+
T Consensus 237 l~~a~~~ai~mHclP~~Rg~EI~~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~~~~~~~ 296 (304)
T 3r7f_A 237 AERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQRALQTNVKRG 296 (304)
T ss_dssp HTTSCTTCEEECCSCCCBTTTBCGGGTTSTTBCHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HhhcCCCCEEECCCCCCCCceeCHHHhCCCchhHHHHHhccHHHHHHHHHHHhcCccccc
Confidence 999999999999999 9999999999999999999999999999999999998653333
No 9
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=99.90 E-value=5.5e-25 Score=181.57 Aligned_cols=120 Identities=21% Similarity=0.278 Sum_probs=89.4
Q ss_pred HHhcCCCeEEeCCCCceeeeccc-----------ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCc
Q psy4400 16 MTKAKSKMAVMHPLPRVFEIAPE-----------FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGL 84 (157)
Q Consensus 16 l~~a~~~~~vmHplPr~~Ei~~~-----------V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~ 84 (157)
+...+.++.+.+| .+++.+.+ +.+++..+ +++||..+..++.- +++. ...+++.+.+.+
T Consensus 174 ~~~~G~~v~~~~P--~~~~~~~~~~~~~~g~~v~~~~d~~ea-v~~aDvvyt~~w~s----mg~e---~~~~~r~~~~~~ 243 (309)
T 4f2g_A 174 ARILDFKLQLSTP--PGYALDAKLVDAESAPFYQVFDDPNEA-CKGADLVTTDVWTS----MGFE---AENEARKRAFAD 243 (309)
T ss_dssp HHHHTCEEEEECC--GGGCCCGGGSCGGGGGGEEECSSHHHH-TTTCSEEEECCC-------------------CCSGGG
T ss_pred HHHcCCEEEEECC--cccCCCHHHHHHHcCCeEEEEcCHHHH-hcCCCEEEeccccc----Ccch---hhHHHHHHHhcC
Confidence 4445667777555 35444332 45677776 48899887766421 1211 112456677889
Q ss_pred cccCHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 85 ~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
|+||.++|+.++++++|||||| ||+||+++|+++|+|.||+||+||+|+|||||+++++..
T Consensus 244 y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~eV~d~p~s~if~QaeN~l~~r~AlL~~ll~~~ 306 (309)
T 4f2g_A 244 WCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQSVVWDEAENRLHVQKALMEFLLLGR 306 (309)
T ss_dssp GCBCHHHHTTSCTTCEEEECSSCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ceeCHHHHHhcCCCeEEECCCCCCCCceecHHHhCCCcchHHHHHHcCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999 999999999999999999999999999999999999864
No 10
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=99.90 E-value=1.8e-25 Score=183.88 Aligned_cols=118 Identities=22% Similarity=0.224 Sum_probs=91.5
Q ss_pred HHhcCCCeEEeCCCCceeeec--------ccccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCcccc
Q psy4400 16 MTKAKSKMAVMHPLPRVFEIA--------PEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIV 87 (157)
Q Consensus 16 l~~a~~~~~vmHplPr~~Ei~--------~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l 87 (157)
+...+.++.+.+| .+++.+ ..+.+++..++ ++||..+..|++.+ ++.. ...++.+.+.+|+|
T Consensus 174 ~~~~g~~v~~~~P--~~~~~~~~~~~~~~~~~~~d~~eav-~~aDvvy~~~~~sm----g~~~---~~~~~~~~~~~y~v 243 (301)
T 2ef0_A 174 APLAGLKVRVATP--KGYEPDPGLLKRANAFFTHDPKEAA-LGAHALYTDVWTSM----GQEA---EREKRLRDFQGFQV 243 (301)
T ss_dssp HHHHTCEEEEECC--TTCCCCHHHHHHHTCEEESCHHHHH-TTCSEEEECCCC---------------CHHHHHTTTCCB
T ss_pred HHHcCCEEEEECC--chhcCCHHHHhhceeEEECCHHHHh-cCCCEEEecCcccC----Cccc---chhHHHHHhhcccc
Confidence 4445677777555 355444 34567888774 99999988887652 2211 12334456788999
Q ss_pred CHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 88 TPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 88 ~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
|.++|+.++++++|||||| ||+||+++|+++|+|.||+||+||+|+|||||+++++
T Consensus 244 ~~e~l~~a~~~ai~mHplP~~Rg~EI~~eV~d~p~s~if~QaeN~l~~rmAlL~~ll~ 301 (301)
T 2ef0_A 244 NGELLKLLRPEGVFLHCLPAHYGEETTEEAVHGPRSRVFDQAENRLHTAKAVLLTLLK 301 (301)
T ss_dssp CHHHHTTSCTTCEEEECSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHhcCCCcEEECCCCCCCCCccCHHHhCCCcchHHHHHhcCHHHHHHHHHHHhC
Confidence 9999999999999999999 8999999999999999999999999999999999874
No 11
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=99.90 E-value=1.9e-25 Score=184.83 Aligned_cols=99 Identities=24% Similarity=0.323 Sum_probs=81.7
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCC--CccccCcccc
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFD 116 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~ 116 (157)
+.+++..++ ++||..+..|++.+ ++. ....++.+.+.+|+||.++|+.+++|++|||||| ||+||+++|+
T Consensus 213 ~~~d~~eav-~~aDvvy~~~w~sm----g~~---~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~eV~ 284 (315)
T 1pvv_A 213 LLHDPVKAV-KDADVIYTDVWASM----GQE---AEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVI 284 (315)
T ss_dssp EESCHHHHT-TTCSEEEECCCCCS----STT---SSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHH
T ss_pred EEeCHHHHh-CCCCEEEEcceecc----Ccc---cchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCHHHh
Confidence 467777774 88998888776532 211 1123445567889999999999999999999999 8999999999
Q ss_pred CCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 117 SDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 117 ~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
++|+|.||+||+||+|+|||||+++++..
T Consensus 285 d~p~s~vf~QaeNrl~~r~AlL~~ll~~~ 313 (315)
T 1pvv_A 285 DSPNSVVWDQAENRLHAQKAVLALVMGGI 313 (315)
T ss_dssp TSTTBCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCccHHHHHHhhCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999754
No 12
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=99.89 E-value=6.1e-25 Score=182.32 Aligned_cols=117 Identities=19% Similarity=0.163 Sum_probs=89.2
Q ss_pred HHhcCCCeEEeCCCCceeeec-----------------ccccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCC
Q psy4400 16 MTKAKSKMAVMHPLPRVFEIA-----------------PEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTP 78 (157)
Q Consensus 16 l~~a~~~~~vmHplPr~~Ei~-----------------~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey 78 (157)
+...+.++.+.+| .+++.+ ..+.+++..++ ++||..+..|++.+. +. ....++
T Consensus 188 ~~~~G~~v~~~~P--~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav-~~aDvvyt~~w~smg----~~---~~~~~~ 257 (325)
T 1vlv_A 188 CAKMGMNFVACGP--EELKPRSDVFKRCQEIVKETDGSVSFTSNLEEAL-AGADVVYTDVWASMG----EE---DKEKER 257 (325)
T ss_dssp HHHTTCEEEEESC--GGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHH-TTCSEEEECCCC-----------------C
T ss_pred HHHCCCEEEEECC--ccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHH-ccCCEEEeccccccc----cc---cchHhH
Confidence 4445677777555 344333 23467777774 999998888876432 11 113456
Q ss_pred CccCCccccCHHHHhcc-CCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHh
Q psy4400 79 KKSCGLYIVTPKIMTKA-KSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142 (157)
Q Consensus 79 ~~~~~~~~l~~e~l~~~-~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll 142 (157)
.+.+.+|+||.++|+.+ ++|++|||||| ||.||+++|+++|+|.||+||+||+|+|||||++++
T Consensus 258 ~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~eV~d~p~S~if~QaeNrl~~rmAlL~~ll 324 (325)
T 1vlv_A 258 MALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATL 324 (325)
T ss_dssp HHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCHHHhCCCcchHHHHHhccHHHHHHHHHHHh
Confidence 66778899999999999 99999999999 899999999999999999999999999999999886
No 13
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=99.89 E-value=1.4e-24 Score=180.47 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=79.5
Q ss_pred cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCC--CccccCccc
Q psy4400 38 EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEF 115 (157)
Q Consensus 38 ~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v 115 (157)
.+.+++..++ ++||..+...+..++. +.++ .+++.+.+.+|+||.++|+.++++++|||||| ||.||+++|
T Consensus 223 ~~~~d~~eav-~~aDvvytd~W~sm~i---q~er---~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~lPa~Rg~EI~~eV 295 (328)
T 3grf_A 223 KIFHDCKKGC-EGVDVVYTDSWMSYHI---TKEQ---KEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTASV 295 (328)
T ss_dssp EEESSHHHHH-TTCSEEEECCCC--------------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCHHH
T ss_pred EEEcCHHHHh-cCCCEEEecCccccCC---cHHH---HHHHHHHhcCCCCCHHHHHhcCCCCEEECCCCCCCCCccCHHH
Confidence 3567777774 8888876532211110 1111 13456677889999999999999999999999 999999999
Q ss_pred cCCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 116 DSDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 116 ~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
+++|+|+||+||+||+|+|||||+++++..
T Consensus 296 ~d~p~S~if~QaeNrl~~r~AlL~~ll~~~ 325 (328)
T 3grf_A 296 IDGPKSVCYDEAGNRLHSAMAVLDFFLHDC 325 (328)
T ss_dssp HTSTTBCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hCCCchhHHHHHhhCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999865
No 14
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=99.88 E-value=5.6e-24 Score=176.41 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=93.6
Q ss_pred HHHhcCCCeEEeCCCCceeeecc------cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccC
Q psy4400 15 IMTKAKSKMAVMHPLPRVFEIAP------EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVT 88 (157)
Q Consensus 15 ~l~~a~~~~~vmHplPr~~Ei~~------~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~ 88 (157)
.+...+.++.+.+| .+++.+. .+.+++..++ ++||..+..|++. +++. .+++.+.+ ..+|+||
T Consensus 191 ~~~~~G~~v~~~~P--~~~~~~~~~~~~~~~~~d~~eav-~~aDvvy~~~w~s----~g~~---~~~~~~~r-~~~y~vt 259 (324)
T 1js1_X 191 WMNATDYEFVITHP--EGYELDPKFVGNARVEYDQMKAF-EGADFIYAKNWAA----YTGD---NYGQILST-DRNWTVG 259 (324)
T ss_dssp HHHTSSSEEEEECC--TTCCCCHHHHTTCEEESCHHHHH-TTCSEEEECCCCC----CSTT---CTTCCCCC-CTTSSBC
T ss_pred HHHHCCCEEEEeCC--cccCCChhhccceEEECCHHHHh-CCCCEEEecCccc----CCCc---cccchHHH-hcCcccC
Confidence 34456677777555 3565543 4567888774 9999988877754 2221 11234444 5789999
Q ss_pred HHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 89 PKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 89 ~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
.++|+.++ +++|||||| ||+||+++|+++|+|+||+||+||+|+|||||+++++..
T Consensus 260 ~e~l~~a~-~ai~MHcLP~~Rg~EI~~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~~~ 317 (324)
T 1js1_X 260 DRQMAVTN-NAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENL 317 (324)
T ss_dssp HHHHTTSS-SCEEECCSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhcC-CcEEECCCCCCCCcccCHHHhCCCcchHHHHHhhCHHHHHHHHHHHHhcC
Confidence 99999999 999999999 899999999999999999999999999999999999764
No 15
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=99.88 E-value=6.7e-25 Score=180.92 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=80.4
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccCCCcEEeCCCC--CccccCcccc
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFD 116 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~ 116 (157)
+.+++..+ +++||..+..|++ -++.. ...+++.+.+.+|+||.++|+.++++++|||||| ||+||+++|+
T Consensus 204 ~~~d~~ea-v~~aDvvyt~~w~----smg~e---~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~eV~ 275 (307)
T 3tpf_A 204 LGYDKFEA-LKDKDVVITDTWV----SMGEE---NEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIF 275 (307)
T ss_dssp EESCHHHH-HTTCSEEEECCSS----CTTGG---GGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHHHH
T ss_pred EEcCHHHH-hcCCCEEEecCcc----cCCch---hhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHHHh
Confidence 45677776 4889988776642 11111 0112344567889999999999999999999999 9999999999
Q ss_pred CCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 117 SDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 117 ~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
++|+|.||+||+||+|+|||||+++++..
T Consensus 276 d~p~s~if~QaeNrl~~r~AlL~~ll~~~ 304 (307)
T 3tpf_A 276 EKHADVIFEEARNRLYVVKALLCFLDNQR 304 (307)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCcchHHHHHHcCHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999864
No 16
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=99.88 E-value=1.7e-24 Score=181.98 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=91.9
Q ss_pred HHHHhcCCCeEEeCCCCceeee-----------------cccccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCC
Q psy4400 14 KIMTKAKSKMAVMHPLPRVFEI-----------------APEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSN 76 (157)
Q Consensus 14 e~l~~a~~~~~vmHplPr~~Ei-----------------~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ 76 (157)
+.+...+.++.+..|-| ++.. ...+.+++..++ ++||..+..|++.++..... ....
T Consensus 214 ~~~~~~g~~v~~~~P~~-~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav-~~aDvvyt~r~q~~r~~~~~----~~~~ 287 (359)
T 3kzn_A 214 TIATRMGMDVTLLCPTP-DYILDERYMDWAAQNVAESGGSLQVSHDIDSAY-AGADVVYAKSWGALPFFGNW----EPEK 287 (359)
T ss_dssp HHHHHTTCEEEEECSSG-GGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHH-TTCSEEEEECCCCGGGTTCC----TTHH
T ss_pred HHHHhccccEEEEeccc-ccCCCHHHHHHHHHHHHhhCCCcccccCHHHHh-cCCeEEEEEEEEEeecccch----hhhH
Confidence 34455678888878765 2111 234667788775 99999998888655432110 0001
Q ss_pred CCCccCCccccCHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 77 TPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 77 ey~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
.....|..|++|.++++. +++++|||||| ||+||+++|+++|+|+||+||+||+|+|||||++|||..
T Consensus 288 ~~~~~~~~y~v~~~l~~~-~~~ai~MHplP~~Rg~EI~~eV~d~p~S~if~QaeNgl~vrmAlL~~llG~~ 357 (359)
T 3kzn_A 288 PIRDQYQHFIVDERKMAL-TNNGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALVGQS 357 (359)
T ss_dssp HHHGGGGGGSBCHHHHHT-SSSCEEECCSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhccChHHHHhcC-CCCCEEECCCCCCCCCCcCHHHHCCCcchHHHHHHhhHHHHHHHHHHHhCCC
Confidence 123446789999999975 46999999999 999999999999999999999999999999999999864
No 17
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=99.88 E-value=1.5e-24 Score=181.91 Aligned_cols=123 Identities=18% Similarity=0.270 Sum_probs=92.2
Q ss_pred HHHhcCCCeEEeCCCCceeeec-----------------ccccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCC
Q psy4400 15 IMTKAKSKMAVMHPLPRVFEIA-----------------PEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNT 77 (157)
Q Consensus 15 ~l~~a~~~~~vmHplPr~~Ei~-----------------~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~e 77 (157)
.+...+.++.+.+|-| +++.+ ..+.+++..+ +++||..+..|++.++. +++.. ..++
T Consensus 215 ~~~~~G~~v~~~~P~~-~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~ea-v~~aDvVyt~~w~se~~-mg~~~---~~~~ 288 (359)
T 1zq6_A 215 IATRMGMDVTLLCPTP-DYILDERYMDWAAQNVAESGGSLQVSHDIDSA-YAGADVVYAKSWGALPF-FGNWE---PEKP 288 (359)
T ss_dssp HHHHTTCEEEEECSSG-GGCCCHHHHHHHHHHHHHHSCEEEEECCHHHH-HTTCSEEEEECCCCGGG-TTCCT---THHH
T ss_pred HHHHcCCEEEEEcCcc-ccCCCHHHHHHHHHHHHHcCCeEEEECCHHHH-hcCCCEEEECCcccccc-CCcch---hhHH
Confidence 3445577777866652 33332 2345777777 48899888877654221 12110 1134
Q ss_pred CCccCCccccCHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcC
Q psy4400 78 PKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 144 (157)
Q Consensus 78 y~~~~~~~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~ 144 (157)
+.+.+.+|+||.++|+.++ +++|||||| ||+||+++|+++|+|+||+||+||+|+|||||+++++.
T Consensus 289 ~~~~~~~y~vt~e~l~~a~-~ai~MHcLP~~Rg~EI~~eV~d~p~S~if~QaeNrl~~r~AlL~~ll~~ 356 (359)
T 1zq6_A 289 IRDQYQHFIVDERKMALTN-NGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALVGQ 356 (359)
T ss_dssp HHGGGGGGSBCHHHHHTSS-SCEEECCSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCCCCCHHHHHhCC-CCEEECCCCCCCCceeCHHHhCCCcchHHHHHhcCHHHHHHHHHHHhcc
Confidence 6677889999999999999 999999999 99999999999999999999999999999999999975
No 18
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=99.88 E-value=1.7e-23 Score=174.46 Aligned_cols=116 Identities=22% Similarity=0.212 Sum_probs=86.7
Q ss_pred HHHhcCCCeEEeCCCCceeeecc-----------------cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCC
Q psy4400 15 IMTKAKSKMAVMHPLPRVFEIAP-----------------EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNT 77 (157)
Q Consensus 15 ~l~~a~~~~~vmHplPr~~Ei~~-----------------~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~e 77 (157)
.+...+.++.+.+|- +++.+. .+.+++. + +++||..+.-. |..+..+++
T Consensus 194 ~~~~~G~~v~~~~P~--~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-a-v~~aDvvytd~----------w~smg~~~~ 259 (339)
T 4a8t_A 194 ITTKMGMNFVHFGPE--GFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-S-VEGADFLYTDV----------WYGLYEAEL 259 (339)
T ss_dssp HHHHTTCEEEEECCT--TSSCCHHHHHHHHHHHHHHCCEEEEECCGG-G-GTTCSEEEECC----------SSCCTTSCC
T ss_pred HHHHcCCEEEEECCc--ccCCCHHHHHHHHHHHHHcCCEEEEECChh-H-HcCCCEEEecC----------cccCCchhh
Confidence 344456777775553 443332 3457777 5 48888866411 212212222
Q ss_pred ----CCccCCc-cccCHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcC
Q psy4400 78 ----PKKSCGL-YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 144 (157)
Q Consensus 78 ----y~~~~~~-~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~ 144 (157)
+.+.+.+ |+||.++|+.++++++|||||| ||+||+++|+++|+|+||+||+||+|+|||||+++++.
T Consensus 260 ~~~er~~~~~~~y~vt~ell~~ak~dai~mHcLPa~Rg~EIt~eV~d~p~S~if~QaeNrl~~r~AlL~~ll~~ 333 (339)
T 4a8t_A 260 SEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTSIRGLLVYLMND 333 (339)
T ss_dssp CHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHHHhCCCcchHHHHHhcCHHHHHHHHHHHHHH
Confidence 2334666 9999999999999999999999 99999999999999999999999999999999999974
No 19
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=99.87 E-value=1.8e-23 Score=175.12 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=78.4
Q ss_pred cccCCchhhhhhhhhhhHHHH---HHHHHHHhccccccccCCCCCccCCccccCHHHHhc--cCCCcEEeCCCCCc-ccc
Q psy4400 38 EFDSDPRAAYFRQAEYGMYVR---MALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTK--AKSKMAVMHPLPRV-FEI 111 (157)
Q Consensus 38 ~V~~~~~s~i~~QA~n~~~~R---mAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~--~~~~~~vmHplPR~-~Ei 111 (157)
.+.+++..++ ++||..+..+ |+.++. ..++.+.|.+|+||.++|+. ++++++|||||||. .||
T Consensus 247 ~~~~d~~eav-~~aDVvytd~w~smg~E~~----------~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcLP~~~~EI 315 (353)
T 3sds_A 247 TQTTVPEVAV-KDADVIVTDTWISMGQETE----------KIKRLEAFKDFKVTSELAKRGGAKENWKFMHCLPRHPEEV 315 (353)
T ss_dssp EEESCHHHHT-TTCSEEEECCC------------------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECSCCCTTTB
T ss_pred EEECCHHHHh-cCCCEEEeCCccCCchhhH----------HHHHHHHhhCceecHHHHhhcccCCCcEEECCCCCCCCeE
Confidence 3556777774 8899887644 321110 01123456789999999998 89999999999965 999
Q ss_pred CccccCCCCchhHHHHhhcHHHHHHHHHHHhcCCCCC
Q psy4400 112 APEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSAL 148 (157)
Q Consensus 112 ~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~~~~ 148 (157)
+++|+++|+|+||+||+||+|+|||||++++...+.+
T Consensus 316 ~~eV~d~p~S~if~QaeNrl~~rmAlL~~~l~~~~~~ 352 (353)
T 3sds_A 316 SDEVFYSERSLVFPEAENRLWAAISALEAFVVNKGKI 352 (353)
T ss_dssp CHHHHTSTTBCHHHHHHHHHHHHHHHHHHHTTSTTCC
T ss_pred CHHHhCCCcchHHHHHhhcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999877654
No 20
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=99.87 E-value=2e-23 Score=174.86 Aligned_cols=116 Identities=22% Similarity=0.215 Sum_probs=86.4
Q ss_pred HHHhcCCCeEEeCCCCceeeecc-----------------cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCC-
Q psy4400 15 IMTKAKSKMAVMHPLPRVFEIAP-----------------EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSN- 76 (157)
Q Consensus 15 ~l~~a~~~~~vmHplPr~~Ei~~-----------------~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~- 76 (157)
.+...+.++.+.+|- +++.+. .+.+++. + +++||..+.-. |..+..++
T Consensus 172 ~~~~~G~~v~~~~P~--~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-a-v~~aDVVytd~----------w~smgq~~~ 237 (355)
T 4a8p_A 172 ITTKMGMNFVHFGPE--GFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-S-VEGADFLYTDV----------WYGLYEAEL 237 (355)
T ss_dssp HHHHTTCEEEEECCT--TSSCCHHHHHHHHHHHHHHSCEEEEECCGG-G-GTTCSEEEECC----------SSEETTEEC
T ss_pred HHHHcCCEEEEECCC--ccCCCHHHHHHHHHHHHHcCCeEEEECCHH-H-HcCCCEEEecc----------cccCcchhh
Confidence 344556677775553 443332 3457777 5 48888866411 11111112
Q ss_pred ---CCCccCCc-cccCHHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcC
Q psy4400 77 ---TPKKSCGL-YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 144 (157)
Q Consensus 77 ---ey~~~~~~-~~l~~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~ 144 (157)
++.+.|.+ |+||.++|+.++++++|||||| ||+||+++|+++|+|+||+||+||+|+|||||+++++.
T Consensus 238 ~~~er~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~eV~d~p~S~if~QaeNrl~~r~AlL~~ll~~ 311 (355)
T 4a8p_A 238 SEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTSIRGLLVYLMND 311 (355)
T ss_dssp CHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHHHhCCCcchHHHHHhcCHHHHHHHHHHHHhh
Confidence 22344666 9999999999999999999999 99999999999999999999999999999999999975
No 21
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=99.87 E-value=1.2e-23 Score=172.20 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=89.6
Q ss_pred HHHhcCCCeEEeCCCCceeeec------ccccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccC
Q psy4400 15 IMTKAKSKMAVMHPLPRVFEIA------PEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVT 88 (157)
Q Consensus 15 ~l~~a~~~~~vmHplPr~~Ei~------~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~ 88 (157)
.+...+.++.+.+|- +++.+ ..+.+++..++ ++||..+.+|.+..++.-.. .++..+| +.+|+||
T Consensus 167 ~~~~~g~~v~~~~P~--~~~p~~~~~~g~~~~~d~~eav-~~aDvvy~~~~q~er~~~~~---~~~~~~~---~~~y~v~ 237 (291)
T 3d6n_B 167 LLNMFGAKIGVCGPK--TLIPRDVEVFKVDVFDDVDKGI-DWADVVIWLRLQKERQKENY---IPSESSY---FKQFGLT 237 (291)
T ss_dssp HHHHTTCEEEEESCG--GGSCTTGGGGCEEEESSHHHHH-HHCSEEEECCCCTHHHHTTS---SSCHHHH---HHHHSBC
T ss_pred HHHHCCCEEEEECCc--hhCCchHHHCCCEEEcCHHHHh-CCCCEEEEeCcccCcccccc---chhHHHH---HhhcCcC
Confidence 344556777775553 44322 34578888774 99999998888766543211 1222333 5579999
Q ss_pred HHHHhccCCCcEEeCCCC--CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 89 PKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 89 ~e~l~~~~~~~~vmHplP--R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
.++|+.++ +|||||| ||.||+++|+++|+|.||+||+||+|+|||||+++++
T Consensus 238 ~~~l~~a~---i~mH~lP~~Rg~EI~~eV~d~p~s~if~QaeN~l~~r~AlL~~~l~ 291 (291)
T 3d6n_B 238 KERFEKVK---LYMHPGPVNRNVDIDHELVYTEKSLIQEQVKNGIPVRKAIYKFLWT 291 (291)
T ss_dssp HHHHTTCC---CEECSSCCCBTTTBCGGGSSSTTBCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcc---cccCCCCCCCCceECHHHhCCcccHHHHHHHhhHHHHHHHHHHHhC
Confidence 99999886 9999999 8999999999999999999999999999999999875
No 22
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=99.87 E-value=5.4e-24 Score=177.28 Aligned_cols=98 Identities=23% Similarity=0.269 Sum_probs=79.3
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhcccccccc-CCCCCccCCccccCHHHHhcc-CCCcEEeCCCC----------
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTY-SNTPKKSCGLYIVTPKIMTKA-KSKMAVMHPLP---------- 106 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~-~~ey~~~~~~~~l~~e~l~~~-~~~~~vmHplP---------- 106 (157)
+.+++..++ ++||..+..|++. ++.. .. ..++.+.+.+|+||.++|+.+ +++++||||||
T Consensus 214 ~~~d~~eav-~~aDvvytd~w~s----mg~~---~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~~h~~~t~~~ 285 (335)
T 1dxh_A 214 LTEDPKEAV-KGVDFVHTDVWVS----MGEP---VEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVG 285 (335)
T ss_dssp EESCHHHHT-TTCSEEEECCCSC----SSSC---GGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCCCCSSSSHHH
T ss_pred EEeCHHHHh-CCCCEEEeCCccc----cCcc---chhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCCCCCccccccc
Confidence 367777764 8899887766642 1211 01 123345678899999999999 99999999999
Q ss_pred -----------CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcC
Q psy4400 107 -----------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 144 (157)
Q Consensus 107 -----------R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~ 144 (157)
||.||+++|+++|+|+||+||+||+|+|||||+++++.
T Consensus 286 ~~~~~~~~~~~Rg~EIt~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~~ 334 (335)
T 1dxh_A 286 KQIAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLAD 334 (335)
T ss_dssp HHHHHHCGGGGGBSSBBHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhhhhhcccCCCCcEecHHHhCCccchHHHHHhhhHHHHHHHHHHHhhc
Confidence 68999999999999999999999999999999999863
No 23
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=99.87 E-value=3.4e-24 Score=180.02 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=77.0
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhc-cCCCcEEeCCCC-----------
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTK-AKSKMAVMHPLP----------- 106 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~-~~~~~~vmHplP----------- 106 (157)
+.+++..++ ++||..+..+++.+ +.. ....+++.+.+.+|+||.++|+. ++++++||||||
T Consensus 240 ~~~d~~eav-~~aDvvyt~~w~s~----~~~--~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~LP~~~n~~~~~~~ 312 (358)
T 4h31_A 240 LTENVAEGV-QGCDFLYTDVWVSM----GES--PEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCLPAFHNDETTIGK 312 (358)
T ss_dssp EESCHHHHH-TTCSEEEECCSSCT----TSC--TTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECSCCCCSSSSHHHH
T ss_pred eccCHHHHh-ccCcEEEEEEEEEc----ccC--chhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCCCCCCCcccccch
Confidence 456677664 78888766554321 110 00112344567889999999985 689999999999
Q ss_pred --------CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcC
Q psy4400 107 --------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 144 (157)
Q Consensus 107 --------R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~ 144 (157)
||+||+++|+++|+|+||+||+||+|+|||||+++||.
T Consensus 313 ~~~~~~~~RG~EIt~eV~d~~~S~if~QaeNrl~~r~AlL~~lLG~ 358 (358)
T 4h31_A 313 QVADKFGMKGLEVTEEVFESEHSIVFDEAENRMHTIKAVMVATLGS 358 (358)
T ss_dssp HHHHHTTCSCSSBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhccCCCceEECHHHhCCCccHHHHHHhhhHHHHHHHHHHHhCC
Confidence 57899999999999999999999999999999999984
No 24
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=99.87 E-value=3.7e-23 Score=172.12 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=78.9
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhcccccccc-CCCCCccCCccccCHHHHhcc-CCCcEEeCCCC----------
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTY-SNTPKKSCGLYIVTPKIMTKA-KSKMAVMHPLP---------- 106 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~-~~ey~~~~~~~~l~~e~l~~~-~~~~~vmHplP---------- 106 (157)
+.+++..++ ++||..+..|++. ++.. .. ..++.+.+.+|+||.++|+.+ +++++||||||
T Consensus 214 ~~~d~~eav-~~aDvvytd~w~s----mg~~---~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~~h~~~t~~~ 285 (333)
T 1duv_G 214 LTEDVAKGV-EGADFIYTDVWVS----MGEA---KEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLG 285 (333)
T ss_dssp EESCHHHHH-TTCSEEEECCSSC----TTSC---TTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCCSSCSHHH
T ss_pred EEECHHHHh-CCCCEEEeCCccc----cCcc---ccchHHHHHHhhccccCHHHHHhccCCCcEEECCCCCCCccccccc
Confidence 367777764 8899888767642 1211 00 122335677899999999999 99999999999
Q ss_pred ----------CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 107 ----------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 107 ----------R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
||.||+++|+++|+|+||+||+||+|+|||||+++++
T Consensus 286 ~~~~~~~~~~Rg~EIt~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~ 332 (333)
T 1duv_G 286 KKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLS 332 (333)
T ss_dssp HHHHHHTTCCSBSSBBHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccccCCCCceeCHHHhCCCcchHHHHHhccHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999986
No 25
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=99.86 E-value=1.5e-23 Score=175.82 Aligned_cols=98 Identities=21% Similarity=0.217 Sum_probs=80.5
Q ss_pred ccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccCCCCCccCCccccCHHHHhccC---CCcEEeCCCC---------
Q psy4400 39 FDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAK---SKMAVMHPLP--------- 106 (157)
Q Consensus 39 V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~~ey~~~~~~~~l~~e~l~~~~---~~~~vmHplP--------- 106 (157)
+.+++..++ ++||..+..|++- +++. ..+++.+.+.+|+||.++|+.++ ++++||||||
T Consensus 235 ~~~d~~eav-~~aDvvytd~w~s----mg~e----e~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP~~h~~~t~~ 305 (359)
T 2w37_A 235 ITDDLDEGL-KGSNVVYTDVWVS----MGES----NWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQY 305 (359)
T ss_dssp EESCHHHHH-TTCSEEEECCSCC----TTCT----THHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSCCCCSSCSHH
T ss_pred EEeCHHHHh-cCCCEEEEccccc----cccc----chHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCCCCccccccc
Confidence 467777764 8898887766642 1211 11334556788999999999999 9999999999
Q ss_pred ----------CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 107 ----------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 107 ----------R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
||+||+++|+++|+|+||+||+||+|+|||||+++++..
T Consensus 306 g~~~~~~~~~Rg~EIt~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~~~ 354 (359)
T 2w37_A 306 GKEIKEKYGITEMEVTDEVFTSKYARQFEEAENRMHSIKAMMAATLGNL 354 (359)
T ss_dssp HHHHHHHHCCCCCSBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhhhhccCCCCceecHHHhCCCcchHHHHHhhhHHHHHHHHHHHHccc
Confidence 789999999999999999999999999999999999764
No 26
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=99.85 E-value=1.6e-22 Score=167.57 Aligned_cols=97 Identities=27% Similarity=0.300 Sum_probs=76.2
Q ss_pred cccCCchhhhhhhhhhhHHHH-HHHHHHHhccccccccCCCCC--ccCCccccCHHHHhccCCCcEEeCCCCC-ccccCc
Q psy4400 38 EFDSDPRAAYFRQAEYGMYVR-MALLTMVLGRDSALTYSNTPK--KSCGLYIVTPKIMTKAKSKMAVMHPLPR-VFEIAP 113 (157)
Q Consensus 38 ~V~~~~~s~i~~QA~n~~~~R-mAll~~ll~~~~~~~~~~ey~--~~~~~~~l~~e~l~~~~~~~~vmHplPR-~~Ei~~ 113 (157)
.+.+++..++ ++||..+..+ .+ ++. ..+.+. +.+.+|+||.++|+.+++|++||||||+ ++||++
T Consensus 212 ~~~~d~~eav-~~aDvvy~d~w~s-----~g~-----e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP~~r~EI~~ 280 (321)
T 1oth_A 212 LLTNDPLEAA-HGGNVLITDTWIS-----MGR-----EEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDD 280 (321)
T ss_dssp EEESCHHHHH-TTCSEEEECCSSC-----TTC-----GGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSCCCTTTBCH
T ss_pred EEEECHHHHh-ccCCEEEEecccc-----ccc-----hhhhHHHHHhccCceECHHHHhhcCCCCEEECCCCCCCcccCH
Confidence 4466777664 8888877632 21 111 011122 2367899999999999999999999993 499999
Q ss_pred cccCCCCchhHHHHhhcHHHHHHHHHHHhcCC
Q psy4400 114 EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 145 (157)
Q Consensus 114 ~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~~ 145 (157)
+|+++|+|.||+||+||+|+|||||+++++..
T Consensus 281 eV~d~p~S~if~QaeNrl~~rmAlL~~ll~~~ 312 (321)
T 1oth_A 281 EVFYSPRSLVFPEAENRKWTIMAVMVSLLTDY 312 (321)
T ss_dssp HHHTSTTBCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhCCcccHHHHHHHhcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999865
No 27
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=99.85 E-value=1.1e-22 Score=170.92 Aligned_cols=96 Identities=21% Similarity=0.202 Sum_probs=76.3
Q ss_pred cccCCchhhhhhhhhhhHHHHHHHHHHHhccccccccC----CCCCccCCccccCHHHHhccCCCcEEeCCCC--C----
Q psy4400 38 EFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYS----NTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--R---- 107 (157)
Q Consensus 38 ~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~~~~~~~----~ey~~~~~~~~l~~e~l~~~~~~~~vmHplP--R---- 107 (157)
.+.+++..++ ++||..+..++ .....+ +++.+.+.+|+||.++|+.++++++|||||| |
T Consensus 240 ~~~~d~~eav-~~aDVVytd~W----------~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP~~R~~~t 308 (365)
T 4amu_A 240 RFSTDKILAA-QDADVIYTDVW----------VSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLPAFHDDHT 308 (365)
T ss_dssp EEESCHHHHT-TTCSEEEECCS----------CCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSCCCCSSCS
T ss_pred EEECCHHHHh-cCCCEEEeccc----------ccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCcccc
Confidence 3456777664 88887665322 111111 1234457789999999999999999999999 6
Q ss_pred --------------------ccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhcC
Q psy4400 108 --------------------VFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 144 (157)
Q Consensus 108 --------------------~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~~ 144 (157)
|+||+++|+++|+|+||+||+||+|+|||||+++|+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~g~EIt~eV~d~p~S~if~QaeNrl~~~kAvL~~llg~ 365 (365)
T 4amu_A 309 SFSKEVATTLGAKYPIVAKGEMEVTDEVFQSLHNKAFDQAENRMHSIKAIILSTIGY 365 (365)
T ss_dssp HHHHHHHHHSSSSCGGGGGSCCSBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred chhhhhhhhcccccccccCCCcEecHHHhCCCcchhHhHHhcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999974
No 28
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=99.81 E-value=3.9e-21 Score=163.23 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=59.1
Q ss_pred CccCCccccCHHHHhccC-CCcEEeCCCC--------CccccCccccCCCCchhHHHHhhcHHHHHHHHHHHhc
Q psy4400 79 KKSCGLYIVTPKIMTKAK-SKMAVMHPLP--------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143 (157)
Q Consensus 79 ~~~~~~~~l~~e~l~~~~-~~~~vmHplP--------R~~Ei~~~v~~~~~s~~~~Qa~n~~~~rmAll~~ll~ 143 (157)
.+.|.+||||.++|+.++ ++++|||||| ||.||+++|+++|+|.||+||+||+|+|||||.+..-
T Consensus 307 ~~~~~~yqVn~elm~~a~~~daifMHcLPa~~~~~~~rg~EVt~eV~d~p~S~vf~QAeNrl~vrmAll~~~~~ 380 (399)
T 3q98_A 307 NAQHKDWHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEKYRIATYKEASWKPYIIAAMILSRKY 380 (399)
T ss_dssp HHTTTTCCBCHHHHHTSGGGCCEECCCSSCCEETTTBSSCSEEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHccCcEECHHHHhhcCCCCcEEECCCCCCCcccCCCCCEeChhhhCCccccHHHHHhccHHHHHHHHHHhhh
Confidence 345778999999999987 5999999999 3899999999999999999999999999999987653
No 29
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=99.80 E-value=2.1e-21 Score=165.64 Aligned_cols=121 Identities=23% Similarity=0.253 Sum_probs=87.7
Q ss_pred HHhcCCCeEEeCCCCceeeec-----------------ccccCCchhhhhhhhhhhHHH-----HHHHHHHHh---cccc
Q psy4400 16 MTKAKSKMAVMHPLPRVFEIA-----------------PEFDSDPRAAYFRQAEYGMYV-----RMALLTMVL---GRDS 70 (157)
Q Consensus 16 l~~a~~~~~vmHplPr~~Ei~-----------------~~V~~~~~s~i~~QA~n~~~~-----RmAll~~ll---~~~~ 70 (157)
+...+.++.+.+|- ++++. ..+.+++..+ +++||..+.. |.|.++... +...
T Consensus 215 l~~lG~~v~l~~P~--~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~ea-v~~ADVVytd~W~sm~~Q~ER~~~~~~g~~~ 291 (418)
T 2yfk_A 215 MTRLGMDVVLAHPE--GYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEA-FKDADVVYPKSWAPFAAMEKRTELYGNGDQA 291 (418)
T ss_dssp HGGGTCEEEEECCT--TCCCCHHHHHHHHHHHHHHSSEEEEESCHHHH-HTTCSEEEECCCCCHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCEEEEECCc--cccCCHHHHHHHHHHHHHcCCEEEEEcCHHHH-hcCCCEEEEccccchhHHHHHhhhhccccch
Confidence 34456788886664 44321 2456777777 4999988764 455555422 1100
Q ss_pred -------ccccCCCCCccCCccccCHHHHhccCC-CcEEeCCCCC--------ccccCccccCCCCchhHHHHhhcHHHH
Q psy4400 71 -------ALTYSNTPKKSCGLYIVTPKIMTKAKS-KMAVMHPLPR--------VFEIAPEFDSDPRAAYFRQAEYGMYVR 134 (157)
Q Consensus 71 -------~~~~~~ey~~~~~~~~l~~e~l~~~~~-~~~vmHplPR--------~~Ei~~~v~~~~~s~~~~Qa~n~~~~r 134 (157)
.+++..+| +.+|+||.++|+.+++ +++||||||+ |.||+++|+++|+|.||+||+||+|+|
T Consensus 292 ~~~~~~~~~~~~~~~---~~~y~vt~elm~~ak~~dai~MHcLPa~r~~~~~rg~EIt~eV~d~p~S~vf~QAeNrl~~r 368 (418)
T 2yfk_A 292 GIDQLEQELLSQNKK---HKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKEASYKPYVI 368 (418)
T ss_dssp HHHHHHHHHHHHHGG---GTTCCBCHHHHHTSGGGCCEECCCSCCCEETTTBSSCSEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHH---HhhcCCCHHHHHhcCCCCeEEECCCCCCCccCCCCCCEEChHHhCCCcchHHhHHhcCHHHH
Confidence 00122233 4579999999999986 9999999994 899999999999999999999999999
Q ss_pred HHHHHHHh
Q psy4400 135 MALLTMVL 142 (157)
Q Consensus 135 mAll~~ll 142 (157)
||||.++.
T Consensus 369 ~AlL~~~~ 376 (418)
T 2yfk_A 369 AAMIFLSK 376 (418)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999875
No 30
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=99.73 E-value=1.5e-18 Score=142.55 Aligned_cols=63 Identities=44% Similarity=0.738 Sum_probs=60.0
Q ss_pred ccCCCCcCHHHHHhcCCCeEEeCCCCceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 5 SCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 5 ~~~~y~v~~e~l~~a~~~~~vmHplPr~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
++.+|+||.++|+.+++|++||||||||.||+++|+++|+|.||+||+||+++|||+|..+++
T Consensus 236 ~~~~y~v~~~~l~~a~~~ai~mH~lPrg~EI~~eV~d~p~s~vf~QaeNrl~~r~AlL~~ll~ 298 (299)
T 1pg5_A 236 IKGSYIVSLDLANKMKKDSIILHPLPRVNEIDRKVDKTTKAKYFEQASYGVPVRMSILTKIYG 298 (299)
T ss_dssp HGGGGSBCHHHHHTSCTTCEEECCSCCSSSBCGGGGGSTTBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhcCcccCHHHHHhcCCCCEEECCCCCCCccCHHHhCCcccHHHHHHHhCHHHHHHHHHHHhc
Confidence 456899999999999999999999999999999999999999999999999999999998874
No 31
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=99.73 E-value=1.6e-18 Score=142.97 Aligned_cols=63 Identities=54% Similarity=0.813 Sum_probs=60.4
Q ss_pred ccCCCCcCHHHHHhcCCCeEEeCCCCceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 5 SCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 5 ~~~~y~v~~e~l~~a~~~~~vmHplPr~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
++.+|+||.++|+.+++|++||||||||.||+++|+++|+|.||+||+||+++|||+|..+++
T Consensus 244 ~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~~eV~d~p~s~if~QaeNrl~~r~AlL~~ll~ 306 (308)
T 1ml4_A 244 VKGSYQVNLKVLEKAKDELRIMHPLPRVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLG 306 (308)
T ss_dssp TTTCCCBCTTGGGGSCTTCEEECCSCCSSSBCGGGGGSTTBCHHHHHHTHHHHHHHHHHHHHT
T ss_pred HhcCcccCHHHHhhcCCCCEEECCCCCCCeecHHHhCCCchHHHHHHhcCHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999999999999999999999999875
No 32
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=99.72 E-value=1.9e-18 Score=142.54 Aligned_cols=64 Identities=44% Similarity=0.726 Sum_probs=58.4
Q ss_pred ccCCCCcCHHHHHhcCCCeEEeCCCCceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 5 SCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 5 ~~~~y~v~~e~l~~a~~~~~vmHplPr~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
++.+|+||.++|+.++++++||||||||.||+++|+++|+|.||+||+||+++|||+|..+++.
T Consensus 243 ~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~~eV~d~p~s~vf~QaeNrl~~r~AlL~~ll~~ 306 (310)
T 3csu_A 243 VKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNR 306 (310)
T ss_dssp ----CCBCGGGGTTCCTTCEEECCSCCSSSBCHHHHTSTTBCHHHHHHTHHHHHHHHHHHHHSS
T ss_pred HhhccCCCHHHHhhcCCCCEEECCCCCCCeecHHHhCCCccHHHHHHHhCHHHHHHHHHHHhcc
Confidence 4568999999999999999999999999999999999999999999999999999999999863
No 33
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=99.71 E-value=3.7e-18 Score=140.70 Aligned_cols=64 Identities=27% Similarity=0.350 Sum_probs=61.5
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
+++.+|+||.++|+.+++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++
T Consensus 240 ~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~eV~d~p~s~if~QaeN~l~~r~AlL~~ll~ 305 (307)
T 2i6u_A 240 KPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDGPASAVWDEAENRLHAQKALLVWLLE 305 (307)
T ss_dssp GGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCHHHHhhcCCCcEEECCCCCCCCcccCHhHhCCcccHHHHHHhcCHHHHHHHHHHHhc
Confidence 578899999999999999999999999 8999999999999999999999999999999998875
No 34
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=99.70 E-value=4e-18 Score=140.25 Aligned_cols=65 Identities=26% Similarity=0.416 Sum_probs=62.0
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+++.+|+||.++|+.+++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++.
T Consensus 225 ~~~~~y~v~~~~l~~a~~~ai~mHclP~~Rg~EI~~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~~ 291 (304)
T 3r7f_A 225 GYLNKYGLTVERAERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQRALQT 291 (304)
T ss_dssp THHHHHSBCHHHHTTSCTTCEEECCSCCCBTTTBCGGGTTSTTBCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhCCCccCHHHHhhcCCCCEEECCCCCCCCceeCHHHhCCCchhHHHHHhccHHHHHHHHHHHhcC
Confidence 567789999999999999999999999 99999999999999999999999999999999999864
No 35
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=99.70 E-value=3.5e-18 Score=141.27 Aligned_cols=65 Identities=26% Similarity=0.383 Sum_probs=61.8
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+++.+|+||.++|+.+++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++.
T Consensus 246 ~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~eV~d~p~s~vf~QaeNrl~~r~AlL~~ll~~ 312 (315)
T 1pvv_A 246 KIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVMGG 312 (315)
T ss_dssp HHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCHHHhCCCccHHHHHHhhCHHHHHHHHHHHhcc
Confidence 467889999999999999999999999 89999999999999999999999999999999998864
No 36
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=99.70 E-value=5.1e-18 Score=139.92 Aligned_cols=65 Identities=26% Similarity=0.349 Sum_probs=62.1
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+++.+|+||.++|+.+++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++.
T Consensus 239 ~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~eV~d~p~s~if~QaeN~l~~r~AlL~~ll~~ 305 (309)
T 4f2g_A 239 RAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQSVVWDEAENRLHVQKALMEFLLLG 305 (309)
T ss_dssp CSGGGGCBCHHHHTTSCTTCEEEECSSCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcCceeCHHHHHhcCCCeEEECCCCCCCCceecHHHhCCCcchHHHHHHcCHHHHHHHHHHHHhh
Confidence 577899999999999999999999999 99999999999999999999999999999999999863
No 37
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=99.70 E-value=4.2e-18 Score=140.03 Aligned_cols=63 Identities=24% Similarity=0.252 Sum_probs=60.6
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHh
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll 66 (157)
+++.+|+||.++|+.++++++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..++
T Consensus 236 ~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~eV~d~p~s~if~QaeN~l~~rmAlL~~ll 300 (301)
T 2ef0_A 236 RDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHGPRSRVFDQAENRLHTAKAVLLTLL 300 (301)
T ss_dssp HHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHHHhCCCcchHHHHHhcCHHHHHHHHHHHh
Confidence 578899999999999999999999999 899999999999999999999999999999999876
No 38
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=99.70 E-value=3.8e-18 Score=141.41 Aligned_cols=66 Identities=26% Similarity=0.379 Sum_probs=62.0
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhccc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 69 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~ 69 (157)
+++.+|+||.++|+.+++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++..
T Consensus 248 ~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~~eV~d~p~S~if~QaeNrl~~r~AlL~~ll~~~ 315 (323)
T 3gd5_A 248 QLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMGGR 315 (323)
T ss_dssp HHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeCHHHhCCCchhHHHHHhccHHHHHHHHHHHhccc
Confidence 577899999999999999999999999 999999999999999999999999999999999998754
No 39
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=99.69 E-value=5.2e-18 Score=139.80 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=62.1
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+++.+|+||.++|+.+++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++.
T Consensus 237 ~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~eV~d~p~s~if~QaeNrl~~r~AlL~~ll~~ 303 (307)
T 3tpf_A 237 KEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQ 303 (307)
T ss_dssp HHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHHHhCCCcchHHHHHHcCHHHHHHHHHHHhhh
Confidence 467899999999999999999999999 99999999999999999999999999999999999874
No 40
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=99.69 E-value=6.8e-18 Score=140.19 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=62.1
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+++.+|+||.++|+.+++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++.
T Consensus 258 ~~~~~y~vt~~~l~~a~~~ai~mH~lPa~Rg~EI~~eV~d~p~S~if~QaeNrl~~r~AlL~~ll~~ 324 (328)
T 3grf_A 258 KVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTASVIDGPKSVCYDEAGNRLHSAMAVLDFFLHD 324 (328)
T ss_dssp HHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhcCCCCCHHHHHhcCCCCEEECCCCCCCCCccCHHHhCCCchhHHHHHhhCHHHHHHHHHHHHhh
Confidence 467889999999999999999999999 99999999999999999999999999999999999864
No 41
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=99.69 E-value=7.5e-18 Score=140.40 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=62.4
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhccc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 69 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~ 69 (157)
+++.+|+||.++|+.+++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++..
T Consensus 269 ~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~eV~d~p~S~if~QaeNrl~~rmAlL~~ll~~~ 336 (340)
T 4ep1_A 269 TLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDGPQSIVFEQAGNRLHAQKALLVSLFKNV 336 (340)
T ss_dssp HHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhccccCCHHHHHhcCCCcEEECCCCCCCCceeCHHHhCCCchhHHHHHhcCHHHHHHHHHHHhccc
Confidence 456789999999999999999999999 999999999999999999999999999999999998754
No 42
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=99.68 E-value=9.9e-18 Score=139.04 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=60.0
Q ss_pred cccCCCCcCHHHHHhc-CCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHh
Q psy4400 4 LSCGLYIVTPKIMTKA-KSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a-~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll 66 (157)
+++.+|+||.++|+.+ ++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..++
T Consensus 259 ~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~eV~d~p~S~if~QaeNrl~~rmAlL~~ll 324 (325)
T 1vlv_A 259 ALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATL 324 (325)
T ss_dssp HHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCHHHhCCCcchHHHHHhccHHHHHHHHHHHh
Confidence 5678999999999999 99999999999 899999999999999999999999999999998765
No 43
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=99.67 E-value=1.4e-17 Score=137.22 Aligned_cols=62 Identities=40% Similarity=0.668 Sum_probs=58.0
Q ss_pred ccCCCCcCHHHHHhcCCCeEEeCCCCceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 5 SCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 5 ~~~~y~v~~e~l~~a~~~~~vmHplPr~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
++.+|+||.++|+. ++++||||||||.||+++|+++|+|.||+||+||+++|||+|..+++.
T Consensus 241 ~~~~y~v~~~~l~~--~~ai~mH~lPRg~EI~~eV~d~p~s~vf~QaeNrl~~r~AlL~~ll~~ 302 (306)
T 4ekn_B 241 VKGSYKIKREYVEG--KKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIED 302 (306)
T ss_dssp HHHHHCBCHHHHTT--CCCEEECCSCCSSSBCGGGTTSTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcEECHHHHcC--CCCEEECCCCCCCeecHhHhCCCcccHHHHHhcCHHHHHHHHHHHhcc
Confidence 34579999999987 899999999999999999999999999999999999999999999863
No 44
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=99.67 E-value=1.8e-17 Score=138.19 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=59.7
Q ss_pred cCC-CCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 6 CGL-YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 6 ~~~-y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
+.+ |+||.++|+.+++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++
T Consensus 268 ~~~~y~vt~ell~~ak~dai~mHcLPa~Rg~EIt~eV~d~p~S~if~QaeNrl~~r~AlL~~ll~ 332 (339)
T 4a8t_A 268 FYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTSIRGLLVYLMN 332 (339)
T ss_dssp HTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHHHhCCCcchHHHHHhcCHHHHHHHHHHHHH
Confidence 566 9999999999999999999999 9999999999999999999999999999999999986
No 45
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=99.66 E-value=2.2e-17 Score=138.32 Aligned_cols=63 Identities=25% Similarity=0.313 Sum_probs=60.4
Q ss_pred cCC-CCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 6 CGL-YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 6 ~~~-y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+.+ |+||.++|+.+++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++.
T Consensus 246 ~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~eV~d~p~S~if~QaeNrl~~r~AlL~~ll~~ 311 (355)
T 4a8p_A 246 FYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTSIRGLLVYLMND 311 (355)
T ss_dssp HTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHHHhCCCcchHHHHHhcCHHHHHHHHHHHHhh
Confidence 566 9999999999999999999999 99999999999999999999999999999999999874
No 46
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=99.66 E-value=3.4e-17 Score=137.32 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=60.3
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+++.+|+||.++|+.++ +++|||||| ||.||+++|+++|++.||+||+||+++|||+|..+++.
T Consensus 291 ~~~~~y~vt~e~l~~a~-~ai~MHcLP~~Rg~EI~~eV~d~p~S~if~QaeNrl~~r~AlL~~ll~~ 356 (359)
T 1zq6_A 291 DQYQHFIVDERKMALTN-NGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALVGQ 356 (359)
T ss_dssp GGGGGGSBCHHHHHTSS-SCEEECCSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhcCCCCCHHHHHhCC-CCEEECCCCCCCCceeCHHHhCCCcchHHHHHhcCHHHHHHHHHHHhcc
Confidence 67889999999999999 999999999 99999999999999999999999999999999998863
No 47
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=99.66 E-value=6.5e-17 Score=133.95 Aligned_cols=64 Identities=31% Similarity=0.345 Sum_probs=59.9
Q ss_pred ccCCCCcCHHHHHhcCCCeEEeCCCCc-eeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 5 SCGLYIVTPKIMTKAKSKMAVMHPLPR-VFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 5 ~~~~y~v~~e~l~~a~~~~~vmHplPr-~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
++.+|+||.++|+.+++|++||||||+ ..||+++|+++|+|.||+||+||+++|||+|..+++.
T Consensus 247 ~~~~y~v~~~~l~~a~~dai~mH~lP~~r~EI~~eV~d~p~S~if~QaeNrl~~rmAlL~~ll~~ 311 (321)
T 1oth_A 247 AFQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTD 311 (321)
T ss_dssp HTTTCCBCHHHHHTSCTTCEEEECSCCCTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hccCceECHHHHhhcCCCCEEECCCCCCCcccCHHHhCCcccHHHHHHHhcHHHHHHHHHHHHhc
Confidence 468899999999999999999999993 3899999999999999999999999999999999864
No 48
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=99.66 E-value=3.3e-17 Score=136.29 Aligned_cols=64 Identities=25% Similarity=0.292 Sum_probs=60.7
Q ss_pred cccCCCCcCHHHHHhc-CCCeEEeCCCC--------------------ceeeecccccCCchhhhhhhhhhhHHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMTKA-KSKMAVMHPLP--------------------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALL 62 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a-~~~~~vmHplP--------------------r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll 62 (157)
+++.+|+||.++|+.+ ++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|
T Consensus 248 ~~~~~y~v~~~ll~~a~~~~ai~mHcLP~~h~~~t~~~~~~~~~~~~~Rg~EIt~eV~d~p~S~vf~QaeNrl~~r~AlL 327 (333)
T 1duv_G 248 ALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVM 327 (333)
T ss_dssp HHHGGGCBCHHHHHTTCCTTCEEEECSCCCCSSCSHHHHHHHHHTTCCSBSSBBHHHHTSTTBCHHHHHHHHHHHHHHHH
T ss_pred HHhhccccCHHHHHhccCCCcEEECCCCCCCccccccchhhhccccCCCCceeCHHHhCCCcchHHHHHhccHHHHHHHH
Confidence 4778999999999999 99999999999 68999999999999999999999999999999
Q ss_pred HHHhc
Q psy4400 63 TMVLG 67 (157)
Q Consensus 63 ~~ll~ 67 (157)
..+++
T Consensus 328 ~~ll~ 332 (333)
T 1duv_G 328 VATLS 332 (333)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98874
No 49
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=99.65 E-value=3.7e-17 Score=136.07 Aligned_cols=64 Identities=28% Similarity=0.311 Sum_probs=60.9
Q ss_pred cccCCCCcCHHHHHhc-CCCeEEeCCCC---------------------ceeeecccccCCchhhhhhhhhhhHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMTKA-KSKMAVMHPLP---------------------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMAL 61 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a-~~~~~vmHplP---------------------r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAl 61 (157)
+++.+|+||.++|+.+ ++|++|||||| ||.||+++|+++|+|.||+||+||+++|||+
T Consensus 248 ~~~~~y~v~~~ll~~a~~~~ai~mHcLP~~h~~~t~~~~~~~~~~~~~~Rg~EIt~eV~d~p~S~vf~QaeNrl~~r~Al 327 (335)
T 1dxh_A 248 KELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAI 327 (335)
T ss_dssp HHHGGGCBCHHHHHTTCCSSCEEEECSCCCCSSSSHHHHHHHHHCGGGGGBSSBBHHHHTSTTBCHHHHHHHHHHHHHHH
T ss_pred HHhhcceeCHHHHHhccCCCeEEECCCCCCCccccccchhhhhhcccCCCCcEecHHHhCCccchHHHHHhhhHHHHHHH
Confidence 4678999999999999 99999999999 6899999999999999999999999999999
Q ss_pred HHHHhc
Q psy4400 62 LTMVLG 67 (157)
Q Consensus 62 l~~ll~ 67 (157)
|..+++
T Consensus 328 L~~ll~ 333 (335)
T 1dxh_A 328 LVSTLA 333 (335)
T ss_dssp HHHHHS
T ss_pred HHHHhh
Confidence 999875
No 50
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=99.65 E-value=4.7e-17 Score=136.64 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=58.4
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
+++..|++|+++++.+ +|++|||||| ||.||+++|+++|+|.||+||+||+++|||+|.+++|.
T Consensus 291 ~~~~~y~v~~~l~~~~-~~ai~MHplP~~Rg~EI~~eV~d~p~S~if~QaeNgl~vrmAlL~~llG~ 356 (359)
T 3kzn_A 291 DQYQHFIVDERKMALT-NNGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALVGQ 356 (359)
T ss_dssp GGGGGGSBCHHHHHTS-SSCEEECCSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhccChHHHHhcCC-CCCEEECCCCCCCCCCcCHHHHCCCcchHHHHHHhhHHHHHHHHHHHhCC
Confidence 5678899999999854 6999999999 99999999999999999999999999999999999874
No 51
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=99.64 E-value=5.6e-17 Score=136.12 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=59.7
Q ss_pred cccCCCCcCHHHHHh-cCCCeEEeCCCC-------------------ceeeecccccCCchhhhhhhhhhhHHHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMTK-AKSKMAVMHPLP-------------------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLT 63 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~-a~~~~~vmHplP-------------------r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~ 63 (157)
+++.+|+||.++|+. ++++++|||||| ||+||+++|+++|+|.||+||+||+++|||+|.
T Consensus 274 ~~~~~y~v~~~~l~~~ak~~~i~mH~LP~~~n~~~~~~~~~~~~~~~RG~EIt~eV~d~~~S~if~QaeNrl~~r~AlL~ 353 (358)
T 4h31_A 274 ALMKPYQVNMNVLKQTGNPNVKFMHCLPAFHNDETTIGKQVADKFGMKGLEVTEEVFESEHSIVFDEAENRMHTIKAVMV 353 (358)
T ss_dssp HHHGGGCBCHHHHHHTTCTTCEEEECSCCCCSSSSHHHHHHHHHTTCSCSSBCHHHHTSTTBCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccCHHHHHhcCCCCcEEECCCCCCCCcccccchhhhhccCCCceEECHHHhCCCccHHHHHHhhhHHHHHHHHH
Confidence 467899999999986 678999999999 578999999999999999999999999999999
Q ss_pred HHhc
Q psy4400 64 MVLG 67 (157)
Q Consensus 64 ~ll~ 67 (157)
+++|
T Consensus 354 ~lLG 357 (358)
T 4h31_A 354 ATLG 357 (358)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9987
No 52
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=99.64 E-value=6.7e-17 Score=135.81 Aligned_cols=64 Identities=23% Similarity=0.274 Sum_probs=61.0
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--c------------------------eeeecccccCCchhhhhhhhhhhHHH
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--R------------------------VFEIAPEFDSDPRAAYFRQAEYGMYV 57 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r------------------------~~Ei~~~V~~~~~s~i~~QA~n~~~~ 57 (157)
+++.+|+||.++|+.++++++|||||| | |.||+++|+++|+|.||+||+||+++
T Consensus 275 ~~~~~y~vt~ell~~a~~dai~MHcLP~~R~~~t~~~~~~~~~~~~~~~~~~~~g~EIt~eV~d~p~S~if~QaeNrl~~ 354 (365)
T 4amu_A 275 GELKNFQVDMNMIKAAKNDVIFLHCLPAFHDDHTSFSKEVATTLGAKYPIVAKGEMEVTDEVFQSLHNKAFDQAENRMHS 354 (365)
T ss_dssp HHHTTCCBCHHHHHHSCTTCEEEECSCCCCSSCSHHHHHHHHHSSSSCGGGGGSCCSBCHHHHHSTTBCHHHHHHHHHHH
T ss_pred HHhcccccCHHHHHhcCCCcEEECCCCCCCccccchhhhhhhhcccccccccCCCcEecHHHhCCCcchhHhHHhcCHHH
Confidence 467899999999999999999999999 6 99999999999999999999999999
Q ss_pred HHHHHHHHhc
Q psy4400 58 RMALLTMVLG 67 (157)
Q Consensus 58 RmAll~~ll~ 67 (157)
|||+|..+++
T Consensus 355 ~kAvL~~llg 364 (365)
T 4amu_A 355 IKAIILSTIG 364 (365)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999999876
No 53
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=99.63 E-value=6.9e-17 Score=135.41 Aligned_cols=65 Identities=28% Similarity=0.334 Sum_probs=61.7
Q ss_pred cccCCCCcCHHHHHhcC---CCeEEeCCCC-------------------ceeeecccccCCchhhhhhhhhhhHHHHHHH
Q psy4400 4 LSCGLYIVTPKIMTKAK---SKMAVMHPLP-------------------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMAL 61 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~---~~~~vmHplP-------------------r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAl 61 (157)
+++.+|+||.++|+.++ ++++|||||| ||.||+++|+++|+|.||+||+||+++|||+
T Consensus 267 ~~~~~y~v~~ell~~ak~~~~dai~MHcLP~~h~~~t~~g~~~~~~~~~Rg~EIt~eV~d~p~S~vf~QaeNrl~~r~Al 346 (359)
T 2w37_A 267 KELTPYQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGKEIKEKYGITEMEVTDEVFTSKYARQFEEAENRMHSIKAM 346 (359)
T ss_dssp HHHGGGCBCHHHHHTTCCCGGGCEEEECSCCCCSSCSHHHHHHHHHHCCCCCSBCHHHHTSTTBCHHHHHHHHHHHHHHH
T ss_pred HHhhccccCHHHHHhhCCCCCCEEEECCCCCCcccccccchhhhhccCCCCceecHHHhCCCcchHHHHHhhhHHHHHHH
Confidence 57789999999999999 9999999999 6899999999999999999999999999999
Q ss_pred HHHHhcc
Q psy4400 62 LTMVLGR 68 (157)
Q Consensus 62 l~~ll~~ 68 (157)
|..+++.
T Consensus 347 L~~ll~~ 353 (359)
T 2w37_A 347 MAATLGN 353 (359)
T ss_dssp HHHHHSC
T ss_pred HHHHHcc
Confidence 9999864
No 54
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=99.63 E-value=1.7e-16 Score=132.86 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=59.6
Q ss_pred ccCCCCcCHHHHHh--cCCCeEEeCCCCce-eeecccccCCchhhhhhhhhhhHHHHHHHHHHHhcc
Q psy4400 5 SCGLYIVTPKIMTK--AKSKMAVMHPLPRV-FEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68 (157)
Q Consensus 5 ~~~~y~v~~e~l~~--a~~~~~vmHplPr~-~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~ 68 (157)
++.+|+||.++|+. +++|++||||||+. .||+++|+++|+|.||+||+||+++|||+|..++.+
T Consensus 282 ~~~~y~vt~ell~~~~ak~~ai~MHcLP~~~~EI~~eV~d~p~S~if~QaeNrl~~rmAlL~~~l~~ 348 (353)
T 3sds_A 282 AFKDFKVTSELAKRGGAKENWKFMHCLPRHPEEVSDEVFYSERSLVFPEAENRLWAAISALEAFVVN 348 (353)
T ss_dssp HTTTCCBCHHHHHHHTCCTTCEEEECSCCCTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhhCceecHHHHhhcccCCCcEEECCCCCCCCeECHHHhCCCcchHHHHHhhcHHHHHHHHHHHHHh
Confidence 46789999999999 89999999999964 899999999999999999999999999999998754
No 55
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=99.62 E-value=1.5e-16 Score=131.83 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=59.4
Q ss_pred CCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhccc
Q psy4400 7 GLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRD 69 (157)
Q Consensus 7 ~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~~~ 69 (157)
.+|+||.++|+.++ +++|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++..
T Consensus 254 ~~y~vt~e~l~~a~-~ai~MHcLP~~Rg~EI~~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~~~ 317 (324)
T 1js1_X 254 RNWTVGDRQMAVTN-NAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENL 317 (324)
T ss_dssp TTSSBCHHHHTTSS-SCEEECCSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCcccCHHHHHhcC-CcEEECCCCCCCCcccCHHHhCCCcchHHHHHhhCHHHHHHHHHHHHhcC
Confidence 68999999999999 999999999 899999999999999999999999999999999998754
No 56
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=99.61 E-value=1.2e-16 Score=130.69 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=57.0
Q ss_pred cccCCCCcCHHHHHhcCCCeEEeCCCC--ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHhc
Q psy4400 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~~~~vmHplP--r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll~ 67 (157)
+++.+|+||.++|+.++ +|||||| ||.||+++|+++|+|.||+||+||+++|||+|..+++
T Consensus 229 ~~~~~y~v~~~~l~~a~---i~mH~lP~~Rg~EI~~eV~d~p~s~if~QaeN~l~~r~AlL~~~l~ 291 (291)
T 3d6n_B 229 SYFKQFGLTKERFEKVK---LYMHPGPVNRNVDIDHELVYTEKSLIQEQVKNGIPVRKAIYKFLWT 291 (291)
T ss_dssp HHHHHHSBCHHHHTTCC---CEECSSCCCBTTTBCGGGSSSTTBCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhcCcCHHHHHhcc---cccCCCCCCCCceECHHHhCCcccHHHHHHHhhHHHHHHHHHHHhC
Confidence 57788999999999886 9999999 8999999999999999999999999999999998753
No 57
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=99.59 E-value=2.8e-16 Score=133.44 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=58.9
Q ss_pred cccCCCCcCHHHHHhcC-CCeEEeCCCC--------ceeeecccccCCchhhhhhhhhhhHHHHHHHHHHHh
Q psy4400 4 LSCGLYIVTPKIMTKAK-SKMAVMHPLP--------RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~-~~~~vmHplP--------r~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll 66 (157)
++|.+||||.++|+.++ ++++|||||| ||.||+++|+++|+|.||+||+||+++|||++.+..
T Consensus 308 ~~~~~yqVn~elm~~a~~~daifMHcLPa~~~~~~~rg~EVt~eV~d~p~S~vf~QAeNrl~vrmAll~~~~ 379 (399)
T 3q98_A 308 AQHKDWHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEKYRIATYKEASWKPYIIAAMILSRK 379 (399)
T ss_dssp HTTTTCCBCHHHHHTSGGGCCEECCCSSCCEETTTBSSCSEEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHccCcEECHHHHhhcCCCCcEEECCCCCCCcccCCCCCEeChhhhCCccccHHHHHhccHHHHHHHHHHhh
Confidence 57889999999999998 4999999999 389999999999999999999999999999999875
No 58
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=99.56 E-value=7.8e-16 Score=131.29 Aligned_cols=63 Identities=24% Similarity=0.286 Sum_probs=59.2
Q ss_pred cccCCCCcCHHHHHhcCC-CeEEeCCCCc--------eeeecccccCCchhhhhhhhhhhHHHHHHHHHHHh
Q psy4400 4 LSCGLYIVTPKIMTKAKS-KMAVMHPLPR--------VFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66 (157)
Q Consensus 4 ~~~~~y~v~~e~l~~a~~-~~~vmHplPr--------~~Ei~~~V~~~~~s~i~~QA~n~~~~RmAll~~ll 66 (157)
+++.+|+||.++|+.+++ +++||||||+ |.||+++|+++|+|.||+||+||+++|||+|....
T Consensus 305 ~~~~~y~vt~elm~~ak~~dai~MHcLPa~r~~~~~rg~EIt~eV~d~p~S~vf~QAeNrl~~r~AlL~~~~ 376 (418)
T 2yfk_A 305 KKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKEASYKPYVIAAMIFLSK 376 (418)
T ss_dssp GGGTTCCBCHHHHHTSGGGCCEECCCSCCCEETTTBSSCSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCHHHHHhcCCCCeEEECCCCCCCccCCCCCCEEChHHhCCCcchHHhHHhcCHHHHHHHHHHhh
Confidence 578999999999999986 9999999994 78999999999999999999999999999999875
Done!