RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4400
(157 letters)
>gnl|CDD|178142 PLN02527, PLN02527, aspartate carbamoyltransferase.
Length = 306
Score = 99.8 bits (249), Expect = 4e-26
Identities = 35/61 (57%), Positives = 44/61 (72%)
Query: 7 GLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
G YIV K+M VMHPLPR+ EI + DSDPRAAYFRQA+ G+++RMALL ++L
Sbjct: 244 GKYIVDKKVMDVLPKHAVVMHPLPRLDEITTDVDSDPRAAYFRQAKNGLFIRMALLKLLL 303
Query: 67 G 67
G
Sbjct: 304 G 304
Score = 99.8 bits (249), Expect = 4e-26
Identities = 35/61 (57%), Positives = 44/61 (72%)
Query: 83 GLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142
G YIV K+M VMHPLPR+ EI + DSDPRAAYFRQA+ G+++RMALL ++L
Sbjct: 244 GKYIVDKKVMDVLPKHAVVMHPLPRLDEITTDVDSDPRAAYFRQAKNGLFIRMALLKLLL 303
Query: 143 G 143
G
Sbjct: 304 G 304
>gnl|CDD|234849 PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit;
Provisional.
Length = 305
Score = 88.6 bits (221), Expect = 6e-22
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 7 GLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTM 64
Y +T + + AK VMHP P R EIA + P++ F Q G+ VRMA+L +
Sbjct: 240 RSYGLTAERLALAKPDAIVMHPGPVNRGVEIASDVADGPQSVIFEQVTNGVAVRMAVLEL 299
Query: 65 VLGRD 69
+LG
Sbjct: 300 LLGGR 304
Score = 88.6 bits (221), Expect = 6e-22
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 83 GLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTM 140
Y +T + + AK VMHP P R EIA + P++ F Q G+ VRMA+L +
Sbjct: 240 RSYGLTAERLALAKPDAIVMHPGPVNRGVEIASDVADGPQSVIFEQVTNGVAVRMAVLEL 299
Query: 141 VLGRD 145
+LG
Sbjct: 300 LLGGR 304
>gnl|CDD|215776 pfam00185, OTCace, Aspartate/ornithine carbamoyltransferase,
Asp/Orn binding domain.
Length = 156
Score = 81.5 bits (202), Expect = 2e-20
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 7 GLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTM 64
Y VT +++ KAK MHPLP R EI + D PR+ F QAE G++VRMALL +
Sbjct: 96 PRYQVTEELLKKAKPDAIFMHPLPAHRGEEITDDVDDGPRSVIFDQAENGLHVRMALLAL 155
Query: 65 V 65
+
Sbjct: 156 L 156
Score = 81.5 bits (202), Expect = 2e-20
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 83 GLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTM 140
Y VT +++ KAK MHPLP R EI + D PR+ F QAE G++VRMALL +
Sbjct: 96 PRYQVTEELLKKAKPDAIFMHPLPAHRGEEITDDVDDGPRSVIFDQAENGLHVRMALLAL 155
Query: 141 V 141
+
Sbjct: 156 L 156
>gnl|CDD|223614 COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain
[Nucleotide transport and metabolism].
Length = 316
Score = 83.4 bits (207), Expect = 7e-20
Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 19 AKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 67
AK VMHPLP RV EIA E D P++ YF+Q + G+ VRMALL ++LG
Sbjct: 262 AKPDAIVMHPLPVNRVVEIASEVDDTPQSRYFQQVKNGVAVRMALLELLLG 312
Score = 83.4 bits (207), Expect = 7e-20
Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 95 AKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143
AK VMHPLP RV EIA E D P++ YF+Q + G+ VRMALL ++LG
Sbjct: 262 AKPDAIVMHPLPVNRVVEIASEVDDTPQSRYFQQVKNGVAVRMALLELLLG 312
>gnl|CDD|233083 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase. Aspartate
transcarbamylase (ATCase) is an alternate name.PyrB
encodes the catalytic chain of aspartate
carbamoyltransferase, an enzyme of pyrimidine
biosynthesis, which organizes into trimers. In some
species, including E. coli and the Archaea but excluding
Bacillus subtilis, a regulatory subunit PyrI is also
present in an allosterically regulated hexameric
holoenzyme. Several molecular weight classes of ATCase
are described in MEDLINE:96303527 and often vary within
taxa. PyrB and PyrI are fused in Thermotoga
maritima.Ornithine carbamoyltransferases are in the same
superfamily and form an outgroup [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 301
Score = 80.5 bits (199), Expect = 6e-19
Identities = 31/61 (50%), Positives = 40/61 (65%)
Query: 7 GLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
G Y +T + + AK + +MHPLPRV EI P D P A YF+QA G+ VRMALL ++L
Sbjct: 241 GSYGITLERLEAAKKGVIIMHPLPRVDEIDPSVDDTPHAKYFKQAFNGVPVRMALLALLL 300
Query: 67 G 67
G
Sbjct: 301 G 301
Score = 80.5 bits (199), Expect = 6e-19
Identities = 31/61 (50%), Positives = 40/61 (65%)
Query: 83 GLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142
G Y +T + + AK + +MHPLPRV EI P D P A YF+QA G+ VRMALL ++L
Sbjct: 241 GSYGITLERLEAAKKGVIIMHPLPRVDEIDPSVDDTPHAKYFKQAFNGVPVRMALLALLL 300
Query: 143 G 143
G
Sbjct: 301 G 301
>gnl|CDD|169269 PRK08192, PRK08192, aspartate carbamoyltransferase; Provisional.
Length = 338
Score = 55.5 bits (134), Expect = 7e-10
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 15 IMTK-AKSKMAVMHPLPR-VFEIAPEFDSD----PRAAYFRQAEYGMYVRMALLTMVLGR 68
I T+ KS +MHPLPR A E D+D P A FRQA+ G+ +RMAL + LG
Sbjct: 259 IYTQHCKSNTVIMHPLPRDSRAQANELDNDLNSHPNLAIFRQADNGLLIRMALFALTLGV 318
Query: 69 DSALTYSNTP 78
D L P
Sbjct: 319 DDQLEKYECP 328
Score = 55.5 bits (134), Expect = 7e-10
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 91 IMTK-AKSKMAVMHPLPR-VFEIAPEFDSD----PRAAYFRQAEYGMYVRMALLTMVLGR 144
I T+ KS +MHPLPR A E D+D P A FRQA+ G+ +RMAL + LG
Sbjct: 259 IYTQHCKSNTVIMHPLPRDSRAQANELDNDLNSHPNLAIFRQADNGLLIRMALFALTLGV 318
Query: 145 DSALTYSNTP 154
D L P
Sbjct: 319 DDQLEKYECP 328
>gnl|CDD|183362 PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional.
Length = 429
Score = 50.2 bits (120), Expect = 7e-08
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 25 VMHPLPR-----VFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYS 75
+MHPLPR +++ + + DPR A FRQ + G+ VRMA+ ++LG ++ + +S
Sbjct: 351 IMHPLPRDSRPGANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLLGVENLVQHS 406
Score = 50.2 bits (120), Expect = 7e-08
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 101 VMHPLPR-----VFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSALTYS 151
+MHPLPR +++ + + DPR A FRQ + G+ VRMA+ ++LG ++ + +S
Sbjct: 351 IMHPLPRDSRPGANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLLGVENLVQHS 406
>gnl|CDD|223156 COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport
and metabolism].
Length = 310
Score = 44.1 bits (105), Expect = 7e-06
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
Y V ++M A MH LP R E+ E F+ P + F +AE ++ + A+L +
Sbjct: 250 YQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEG-PASVVFDEAENRLHTQKAVLAAL 308
Query: 66 LG 67
LG
Sbjct: 309 LG 310
Score = 44.1 bits (105), Expect = 7e-06
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
Y V ++M A MH LP R E+ E F+ P + F +AE ++ + A+L +
Sbjct: 250 YQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEG-PASVVFDEAENRLHTQKAVLAAL 308
Query: 142 LG 143
LG
Sbjct: 309 LG 310
>gnl|CDD|234835 PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.
Length = 304
Score = 38.9 bits (92), Expect = 4e-04
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
Y V ++M AK MH LP R E+ E D P++ + +AE ++ + ALL +
Sbjct: 245 YQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVIDG-PQSVVWDEAENRLHAQKALLAWL 303
Query: 66 L 66
L
Sbjct: 304 L 304
Score = 38.9 bits (92), Expect = 4e-04
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
Y V ++M AK MH LP R E+ E D P++ + +AE ++ + ALL +
Sbjct: 245 YQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVIDG-PQSVVWDEAENRLHAQKALLAWL 303
Query: 142 L 142
L
Sbjct: 304 L 304
>gnl|CDD|129743 TIGR00658, orni_carb_tr, ornithine carbamoyltransferase. This
family of ornithine carbamoyltransferases (OTCase) is in
a superfamily with the related enzyme aspartate
carbamoyltransferase. Most known examples are anabolic,
playing a role in arginine biosynthesis, but some are
catabolic. Most OTCases are homotrimers, but the
homotrimers are organized into dodecamers built from
four trimers in at least two species; the catabolic
OTCase of Pseudomonas aeruginosa is allosterically
regulated, while OTCase of the extreme thermophile
Pyrococcus furiosus shows both allostery and thermophily
[Amino acid biosynthesis, Glutamate family].
Length = 304
Score = 38.9 bits (91), Expect = 5e-04
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLPRV--FEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
Y V ++M AK ++ MH LP E+ E P + F QAE ++ + A++ +L
Sbjct: 244 YQVNEELMELAKPEVIFMHCLPAHRGEEVTDEVIEGPHSIVFDQAENRLHAQKAVMVALL 303
Query: 67 G 67
G
Sbjct: 304 G 304
Score = 38.9 bits (91), Expect = 5e-04
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLPRV--FEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142
Y V ++M AK ++ MH LP E+ E P + F QAE ++ + A++ +L
Sbjct: 244 YQVNEELMELAKPEVIFMHCLPAHRGEEVTDEVIEGPHSIVFDQAENRLHAQKAVMVALL 303
Query: 143 G 143
G
Sbjct: 304 G 304
>gnl|CDD|139876 PRK13814, pyrB, aspartate carbamoyltransferase catalytic subunit;
Provisional.
Length = 310
Score = 38.5 bits (89), Expect = 6e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 7 GLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTM 64
G + +TP+ + AK VMHP P R EI + + ++ +Q G+ +RMA+L +
Sbjct: 242 GSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSDVADNQQSVILQQVRNGVAMRMAVLEL 301
Query: 65 VLGRD 69
L RD
Sbjct: 302 FLLRD 306
Score = 38.5 bits (89), Expect = 6e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 83 GLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTM 140
G + +TP+ + AK VMHP P R EI + + ++ +Q G+ +RMA+L +
Sbjct: 242 GSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSDVADNQQSVILQQVRNGVAMRMAVLEL 301
Query: 141 VLGRD 145
L RD
Sbjct: 302 FLLRD 306
>gnl|CDD|237369 PRK13376, pyrB, bifunctional aspartate carbamoyltransferase
catalytic subunit/aspartate carbamoyltransferase
regulatory subunit; Provisional.
Length = 525
Score = 37.8 bits (88), Expect = 0.001
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 27 HPLPR--VFEIAPEF-DSDPRAAYFRQAEYGMYVRMALLTMVLG 67
HPLPR V+ P F D+ P + QA G +VR+ LL+M+ G
Sbjct: 291 HPLPRHKVYPTIPTFLDTLPLNGWETQAINGYWVRIVLLSMLGG 334
Score = 37.8 bits (88), Expect = 0.001
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 103 HPLPR--VFEIAPEF-DSDPRAAYFRQAEYGMYVRMALLTMVLG 143
HPLPR V+ P F D+ P + QA G +VR+ LL+M+ G
Sbjct: 291 HPLPRHKVYPTIPTFLDTLPLNGWETQAINGYWVRIVLLSMLGG 334
>gnl|CDD|177976 PLN02342, PLN02342, ornithine carbamoyltransferase.
Length = 348
Score = 34.4 bits (79), Expect = 0.016
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
+ V +M A + MH LP R E+ P + F QAE M+ + A++ L
Sbjct: 287 FQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVMEAPNSIVFPQAENRMHAQNAIMLHQL 346
Query: 67 G 67
G
Sbjct: 347 G 347
Score = 34.4 bits (79), Expect = 0.016
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142
+ V +M A + MH LP R E+ P + F QAE M+ + A++ L
Sbjct: 287 FQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVMEAPNSIVFPQAENRMHAQNAIMLHQL 346
Query: 143 G 143
G
Sbjct: 347 G 347
>gnl|CDD|237819 PRK14805, PRK14805, ornithine carbamoyltransferase; Provisional.
Length = 302
Score = 33.9 bits (78), Expect = 0.023
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
Y V +M KA + VMH P R EI E + +QAE M+ + A+L +L
Sbjct: 242 YQVNKALMEKAGATF-VMHCQPAHRGVEITSEVMDGEGSLILQQAENRMHAQNAVLVTLL 300
Query: 67 G 67
Sbjct: 301 S 301
Score = 33.9 bits (78), Expect = 0.023
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142
Y V +M KA + VMH P R EI E + +QAE M+ + A+L +L
Sbjct: 242 YQVNKALMEKAGATF-VMHCQPAHRGVEITSEVMDGEGSLILQQAENRMHAQNAVLVTLL 300
Query: 143 G 143
Sbjct: 301 S 301
>gnl|CDD|235017 PRK02255, PRK02255, putrescine carbamoyltransferase; Provisional.
Length = 338
Score = 30.8 bits (70), Expect = 0.24
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALL 62
Y VTP++M KA MH LP R E+ E PR+ F +AE + ALL
Sbjct: 252 YQVTPELMAKAGPHAKFMHCLPATRGEEVTDEVMDSPRSICFDEAENRLTAIRALL 307
Score = 30.8 bits (70), Expect = 0.24
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALL 138
Y VTP++M KA MH LP R E+ E PR+ F +AE + ALL
Sbjct: 252 YQVTPELMAKAGPHAKFMHCLPATRGEEVTDEVMDSPRSICFDEAENRLTAIRALL 307
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B
binding protein Lhca1; Provisional.
Length = 243
Score = 30.4 bits (68), Expect = 0.28
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 4 LSCGLYIVTPKIMTKAKSKMAVMHPLP------RVFEIAPEFDSDPRAAYF 48
+SCG+ V P +++ +KSK A PLP RV A PR Y
Sbjct: 7 MSCGIAAVFPSLLSSSKSKFASSVPLPNANGSSRVTMSADWMPGQPRPPYL 57
Score = 30.0 bits (67), Expect = 0.43
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 81 SCGLYIVTPKIMTKAKSKMAVMHPLP------RVFEIAPEFDSDPRAAYF 124
SCG+ V P +++ +KSK A PLP RV A PR Y
Sbjct: 8 SCGIAAVFPSLLSSSKSKFASSVPLPNANGSSRVTMSADWMPGQPRPPYL 57
>gnl|CDD|235304 PRK04523, PRK04523, N-acetylornithine carbamoyltransferase;
Reviewed.
Length = 335
Score = 30.5 bits (69), Expect = 0.31
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
+IV + M + H LP R ++ P +AE ++V+ A++ +
Sbjct: 275 FIVDERKMALTNNG-VFSHCLPLRRNVKVTDAVMDSPNCIAIDEAENRLHVQKAIMAALA 333
Query: 67 GR 68
+
Sbjct: 334 SQ 335
Score = 30.5 bits (69), Expect = 0.31
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142
+IV + M + H LP R ++ P +AE ++V+ A++ +
Sbjct: 275 FIVDERKMALTNNG-VFSHCLPLRRNVKVTDAVMDSPNCIAIDEAENRLHVQKAIMAALA 333
Query: 143 GR 144
+
Sbjct: 334 SQ 335
>gnl|CDD|173265 PRK14804, PRK14804, ornithine carbamoyltransferase; Provisional.
Length = 311
Score = 29.2 bits (65), Expect = 0.85
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
Y + +M K +K VMH +P +EI E R+ F+QAE + + A++ +L
Sbjct: 252 YQINSSLMEKTNAK--VMHDMPIHAGYEITREVVLSDRSIIFQQAENRLDAQKAVILKLL 309
Score = 29.2 bits (65), Expect = 0.85
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142
Y + +M K +K VMH +P +EI E R+ F+QAE + + A++ +L
Sbjct: 252 YQINSSLMEKTNAK--VMHDMPIHAGYEITREVVLSDRSIIFQQAENRLDAQKAVILKLL 309
>gnl|CDD|234159 TIGR03293, PhnG_redo, phosphonate C-P lyase system protein PhnG.
PhnH is a component of the C-P lyase system
(GenProp0232) for the catabolism of phosphonate
compounds. The specific function of this component is
unknown. This model is based on pfam06754.2, and has
been broadened to include sequences missed by that
model which are clearly true positive hits based on
genome context.
Length = 144
Score = 28.4 bits (64), Expect = 1.1
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 26 MHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSAL 72
PL + +A P+ + R E G L M+ GRD
Sbjct: 13 HAPLEELEALANRVAPSPQYSVLRAPETG-------LVMLRGRDGGT 52
Score = 28.4 bits (64), Expect = 1.1
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 102 MHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGRDSAL 148
PL + +A P+ + R E G L M+ GRD
Sbjct: 13 HAPLEELEALANRVAPSPQYSVLRAPETG-------LVMLRGRDGGT 52
>gnl|CDD|220716 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain.
Fmp27_WPPW is a conserved domain of a family of proteins
involved in RNA polymerase II transcription initiation.
It contains characteristic HQR and WPPW sequence motifs.
and is towards the C-terminal in members which contain
Fmp27_SW pfam10305.
Length = 470
Score = 28.4 bits (64), Expect = 1.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 28 PLPRVFEIAPEFDSDPRAAYFRQAEYG 54
P+P++ +I P S PR YFR+ +YG
Sbjct: 107 PVPKI-KILPLLFS-PRFTYFRKTDYG 131
Score = 28.4 bits (64), Expect = 1.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 104 PLPRVFEIAPEFDSDPRAAYFRQAEYG 130
P+P++ +I P S PR YFR+ +YG
Sbjct: 107 PVPKI-KILPLLFS-PRFTYFRKTDYG 131
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 27.4 bits (61), Expect = 3.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 22 KMAVMHPLPRVFEIAPEF 39
+MA+ RVFEI P F
Sbjct: 284 QMAICGDFRRVFEIGPVF 301
Score = 27.4 bits (61), Expect = 3.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 98 KMAVMHPLPRVFEIAPEF 115
+MA+ RVFEI P F
Sbjct: 284 QMAICGDFRRVFEIGPVF 301
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 27.1 bits (59), Expect = 4.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 30 PRVFEIAPEFDSDPRAAYFRQAEYGMYV 57
P+V E A EF ++P++A EYGM V
Sbjct: 378 PQVREAAAEFHANPKSASVYLEEYGMPV 405
Score = 27.1 bits (59), Expect = 4.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 106 PRVFEIAPEFDSDPRAAYFRQAEYGMYV 133
P+V E A EF ++P++A EYGM V
Sbjct: 378 PQVREAAAEFHANPKSASVYLEEYGMPV 405
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.134 0.393
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,848,849
Number of extensions: 695364
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 63
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.0 bits)