RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4400
(157 letters)
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P;
1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB:
1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A*
1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A*
2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Length = 310
Score = 119 bits (300), Expect = 1e-33
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 80 KSCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLT 139
+++ + AK+ M V+HPLPRV EIA + D P A YF+QA G++ R ALL
Sbjct: 242 NVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLA 301
Query: 140 MVLGRDSAL 148
+VL RD L
Sbjct: 302 LVLNRDLVL 310
Score = 119 bits (300), Expect = 1e-33
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 7 GLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
+++ + AK+ M V+HPLPRV EIA + D P A YF+QA G++ R ALL +VL
Sbjct: 245 AQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
Query: 67 GRDSAL 72
RD L
Sbjct: 305 NRDLVL 310
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius}
SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Length = 299
Score = 116 bits (292), Expect = 2e-32
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 80 KSCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLT 139
K G YIV+ + K K ++HPLPRV EI + D +A YF QA YG+ VRM++LT
Sbjct: 235 KIKGSYIVSLDLANKMKKDSIILHPLPRVNEIDRKVDKTTKAKYFEQASYGVPVRMSILT 294
Query: 140 MVLG 143
+ G
Sbjct: 295 KIYG 298
Score = 115 bits (291), Expect = 2e-32
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 7 GLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
G YIV+ + K K ++HPLPRV EI + D +A YF QA YG+ VRM++LT +
Sbjct: 238 GSYIVSLDLANKMKKDSIILHPLPRVNEIDRKVDKTTKAKYFEQASYGVPVRMSILTKIY 297
Query: 67 G 67
G
Sbjct: 298 G 298
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor
complex, transferase; HET: PAL; 1.80A {Pyrococcus
abyssi} SCOP: c.78.1.1 c.78.1.1
Length = 308
Score = 114 bits (288), Expect = 8e-32
Identities = 35/64 (54%), Positives = 43/64 (67%)
Query: 80 KSCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLT 139
K G Y V K++ KAK ++ +MHPLPRV EI PE D+ A YFRQ G+ VRMALL
Sbjct: 243 KVKGSYQVNLKVLEKAKDELRIMHPLPRVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLA 302
Query: 140 MVLG 143
+VLG
Sbjct: 303 LVLG 306
Score = 114 bits (287), Expect = 1e-31
Identities = 34/61 (55%), Positives = 42/61 (68%)
Query: 7 GLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
G Y V K++ KAK ++ +MHPLPRV EI PE D+ A YFRQ G+ VRMALL +VL
Sbjct: 246 GSYQVNLKVLEKAKDELRIMHPLPRVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVL 305
Query: 67 G 67
G
Sbjct: 306 G 306
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate
transcarbamoylase, pyrimidine biosynthesis
thermostability, substrate channeling; 2.50A
{Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Length = 306
Score = 110 bits (277), Expect = 2e-30
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 80 KSCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLT 139
K G Y + + + K +MHPLPRV EI + D P+A YF+Q+ YG+ VRMA+L
Sbjct: 240 KVKGSYKIKREYVEGKK--FIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILK 297
Query: 140 MVLGRDSA 147
++ +
Sbjct: 298 KLIEDNEG 305
Score = 110 bits (277), Expect = 3e-30
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 7 GLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
G Y + + + K +MHPLPRV EI + D P+A YF+Q+ YG+ VRMA+L ++
Sbjct: 243 GSYKIKREYVEGKK--FIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLI 300
Query: 67 GRDSA 71
+
Sbjct: 301 EDNEG 305
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase,
carbamoyl phosphate, transferas catalytic cycle; 2.10A
{Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Length = 304
Score = 55.2 bits (134), Expect = 6e-10
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 8 LYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMV 65
Y +T + + K +MHP P R EI ++ F+Q + G+++RMA++
Sbjct: 229 KYGLTVERAERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQRA 288
Query: 66 LGRDSA 71
L +
Sbjct: 289 LQTNVK 294
Score = 55.2 bits (134), Expect = 6e-10
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 84 LYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMV 141
Y +T + + K +MHP P R EI ++ F+Q + G+++RMA++
Sbjct: 229 KYGLTVERAERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQRA 288
Query: 142 LGRDSA 147
L +
Sbjct: 289 LQTNVK 294
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal
cavity, hydrolase, metal-B pyrimidine biosynthesis,
hydrolase-transferase; HET: FLC; 2.30A {Aquifex
aeolicus}
Length = 291
Score = 48.6 bits (117), Expect = 1e-07
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 16 MTKAKSKMA--VMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
+TK + + MHP P R +I E ++ Q + G+ VR A+ +
Sbjct: 236 LTKERFEKVKLYMHPGPVNRNVDIDHELVYTEKSLIQEQVKNGIPVRKAIYKFLW 290
Score = 48.6 bits (117), Expect = 1e-07
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 92 MTKAKSKMA--VMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142
+TK + + MHP P R +I E ++ Q + G+ VR A+ +
Sbjct: 236 LTKERFEKVKLYMHPGPVNRNVDIDHELVYTEKSLIQEQVKNGIPVRKAIYKFLW 290
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A
{Enterococcus faecalis}
Length = 418
Score = 46.7 bits (111), Expect = 6e-07
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 9 YIVTPKIMTKAKSKMA-VMHPLP--------RVFEIAPE-FDSDPRAAYFRQAEYGMYVR 58
+ T ++M K A MH LP E+ FD R +++A Y YV
Sbjct: 310 WECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDR-YRVELYKEASYKPYVI 368
Query: 59 MALLTMVLGRDSALTYSNTPKKS 81
A++ + ++ T ++ K+
Sbjct: 369 AAMIFLSKVKNPQKTLTDLADKA 391
Score = 46.7 bits (111), Expect = 7e-07
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 85 YIVTPKIMTKAKSKMA-VMHPLP--------RVFEIAPE-FDSDPRAAYFRQAEYGMYVR 134
+ T ++M K A MH LP E+ FD R +++A Y YV
Sbjct: 310 WECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDR-YRVELYKEASYKPYVI 368
Query: 135 MALLTMVLGRDSALTYSNTPKK 156
A++ + ++ T ++ K
Sbjct: 369 AAMIFLSKVKNPQKTLTDLADK 390
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia
coli}
Length = 399
Score = 45.9 bits (109), Expect = 1e-06
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 9 YIVTPKIMTKAKSKMA-VMHPLP--------RVFEIAPE-FDSDPRAAYFRQAEYGMYVR 58
+ T ++M + A MH LP + E+ F+ R A +++A + Y+
Sbjct: 313 WHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEK-YRIATYKEASWKPYII 371
Query: 59 MALLTMVLGRDSA 71
A++
Sbjct: 372 AAMILSRKYAKPG 384
Score = 45.9 bits (109), Expect = 1e-06
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 85 YIVTPKIMTKAKSKMA-VMHPLP--------RVFEIAPE-FDSDPRAAYFRQAEYGMYVR 134
+ T ++M + A MH LP + E+ F+ R A +++A + Y+
Sbjct: 313 WHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEK-YRIATYKEASWKPYII 371
Query: 135 MALLTMVLGRDSA 147
A++
Sbjct: 372 AAMILSRKYAKPG 384
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid,
rossman fold; 2.70A {Campylobacter jejuni subsp}
Length = 307
Score = 42.1 bits (100), Expect = 2e-05
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
+++ K M+ A ++H LP R +E++ E F+ F +A +YV ALL +
Sbjct: 242 FMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK-HADVIFEEARNRLYVVKALLCFL 300
Query: 66 LGR 68
+
Sbjct: 301 DNQ 303
Score = 42.1 bits (100), Expect = 2e-05
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
+++ K M+ A ++H LP R +E++ E F+ F +A +YV ALL +
Sbjct: 242 FMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK-HADVIFEEARNRLYVVKALLCFL 300
Query: 142 LGR 144
+
Sbjct: 301 DNQ 303
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
3.25A {Bacillus anthracis}
Length = 340
Score = 41.8 bits (99), Expect = 3e-05
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
Y + +++ AK +H LP R E+ E D P++ F QA ++ + ALL +
Sbjct: 274 YQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDG-PQSIVFEQAGNRLHAQKALLVSL 332
Query: 66 LGRDSALT 73
L+
Sbjct: 333 FKNVEELS 340
Score = 41.8 bits (99), Expect = 3e-05
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
Y + +++ AK +H LP R E+ E D P++ F QA ++ + ALL +
Sbjct: 274 YQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDG-PQSIVFEQAGNRLHAQKALLVSL 332
Query: 142 LGRDSALT 149
L+
Sbjct: 333 FKNVEELS 340
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A
{Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB:
1a1s_A
Length = 315
Score = 41.0 bits (97), Expect = 6e-05
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
+ V ++ AK MH LP R E+ + DS P + + QAE ++ + A+L +V
Sbjct: 251 FQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDS-PNSVVWDQAENRLHAQKAVLALV 309
Query: 66 LG 67
+G
Sbjct: 310 MG 311
Score = 41.0 bits (97), Expect = 6e-05
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
+ V ++ AK MH LP R E+ + DS P + + QAE ++ + A+L +V
Sbjct: 251 FQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDS-PNSVVWDQAENRLHAQKAVLALV 309
Query: 142 LG 143
+G
Sbjct: 310 MG 311
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A
{Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A
1fvo_A 1c9y_A* 1fb5_A
Length = 321
Score = 41.0 bits (97), Expect = 6e-05
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP-RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMVL 66
Y VT K A S +H LP + E+ E F S PR+ F +AE + MA++ +L
Sbjct: 251 YQVTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYS-PRSLVFPEAENRKWTIMAVMVSLL 309
Query: 67 G 67
Sbjct: 310 T 310
Score = 41.0 bits (97), Expect = 6e-05
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP-RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMVL 142
Y VT K A S +H LP + E+ E F S PR+ F +AE + MA++ +L
Sbjct: 251 YQVTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYS-PRSLVFPEAENRKWTIMAVMVSLL 309
Query: 143 G 143
Sbjct: 310 T 310
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics,
NYSGXRC, target 9454P, operon, amino-acid biosynthesis,
ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Length = 323
Score = 40.6 bits (96), Expect = 6e-05
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
Y + ++ A ++ V+H LP R EI E + PR+ + +AE ++ + A+L +
Sbjct: 253 YQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEG-PRSRIWDEAENRLHAQKAVLAAL 311
Query: 66 LG 67
+G
Sbjct: 312 MG 313
Score = 40.6 bits (96), Expect = 6e-05
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
Y + ++ A ++ V+H LP R EI E + PR+ + +AE ++ + A+L +
Sbjct: 253 YQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEG-PRSRIWDEAENRLHAQKAVLAAL 311
Query: 142 LG 143
+G
Sbjct: 312 MG 313
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET:
AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A
1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A*
3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A*
3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Length = 359
Score = 40.4 bits (95), Expect = 7e-05
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
+IV + M + + H LP R + DS P +AE ++V+ A++ +
Sbjct: 296 FIVDERKMALTNNGV-FSHCLPLRRNVKATDAVMDS-PNCIAIDEAENRLHVQKAIMAAL 353
Query: 66 LGR 68
+G+
Sbjct: 354 VGQ 356
Score = 40.4 bits (95), Expect = 7e-05
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
+IV + M + + H LP R + DS P +AE ++V+ A++ +
Sbjct: 296 FIVDERKMALTNNGV-FSHCLPLRRNVKATDAVMDS-PNCIAIDEAENRLHVQKAIMAAL 353
Query: 142 LGR 144
+G+
Sbjct: 354 VGQ 356
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics,
niaid, national institute of allergy AN infectious
diseases; 2.10A {Burkholderia thailandensis}
Length = 309
Score = 40.2 bits (95), Expect = 1e-04
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
+ V ++M+ A S MH LP R E+ D P++ + +AE ++V+ AL+ +
Sbjct: 244 WCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDG-PQSVVWDEAENRLHVQKALMEFL 302
Query: 66 LG 67
L
Sbjct: 303 LL 304
Score = 40.2 bits (95), Expect = 1e-04
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
+ V ++M+ A S MH LP R E+ D P++ + +AE ++V+ AL+ +
Sbjct: 244 WCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDG-PQSVVWDEAENRLHVQKALMEFL 302
Query: 142 LG 143
L
Sbjct: 303 LL 304
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography,
ornithine carbamyoltransferase, carbamoyl phosphate, L-
norvaline; 2.20A {Mycobacterium tuberculosis} PDB:
2p2g_A
Length = 307
Score = 40.2 bits (95), Expect = 1e-04
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
+ + +++ A S V+H LP R EI D P +A + +AE ++ + ALL +
Sbjct: 245 FQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDG-PASAVWDEAENRLHAQKALLVWL 303
Query: 66 LGR 68
L R
Sbjct: 304 LER 306
Score = 40.2 bits (95), Expect = 1e-04
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
+ + +++ A S V+H LP R EI D P +A + +AE ++ + ALL +
Sbjct: 245 FQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDG-PASAVWDEAENRLHAQKALLVWL 303
Query: 142 LGR 144
L R
Sbjct: 304 LER 306
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus}
Length = 301
Score = 39.0 bits (92), Expect = 2e-04
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
+ V +++ + + +H LP E E PR+ F QAE ++ A+L +
Sbjct: 241 FQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHG-PRSRVFDQAENRLHTAKAVLLTL 299
Query: 66 L 66
L
Sbjct: 300 L 300
Score = 39.0 bits (92), Expect = 2e-04
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
+ V +++ + + +H LP E E PR+ F QAE ++ A+L +
Sbjct: 241 FQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHG-PRSRVFDQAENRLHTAKAVLLTL 299
Query: 142 L 142
L
Sbjct: 300 L 300
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase
route; HET: PAO; 2.00A {Enterococcus faecalis} PDB:
4a8h_A* 3txx_A
Length = 355
Score = 38.3 bits (90), Expect = 5e-04
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
Y V ++M +A + MH LP R E+ E D + F +AE + LL +
Sbjct: 250 YQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDG-KNSICFDEAENRLTSIRGLLVYL 308
Query: 66 LGRDSALTYSNTPKKS 81
+ A + K++
Sbjct: 309 MNDYEAKNPYDLIKQA 324
Score = 38.0 bits (89), Expect = 5e-04
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
Y V ++M +A + MH LP R E+ E D + F +AE + LL +
Sbjct: 250 YQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDG-KNSICFDEAENRLTSIRGLLVYL 308
Query: 142 LGRDSALTYSNTPKKV 157
+ A + K+
Sbjct: 309 MNDYEAKNPYDLIKQA 324
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase,
arginine degradation pathway, giardia lamblia, drug
target; 2.00A {Giardia intestinalis}
Length = 328
Score = 37.9 bits (89), Expect = 6e-04
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
+ V +M + M+ LP R E D P++ + +A ++ MA+L
Sbjct: 263 FQVDDAVMAVTSKRSIFMNCLPATRGEEQTASVIDG-PKSVCYDEAGNRLHSAMAVLDFF 321
Query: 66 LG 67
L
Sbjct: 322 LH 323
Score = 37.9 bits (89), Expect = 6e-04
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
+ V +M + M+ LP R E D P++ + +A ++ MA+L
Sbjct: 263 FQVDDAVMAVTSKRSIFMNCLPATRGEEQTASVIDG-PKSVCYDEAGNRLHSAMAVLDFF 321
Query: 142 LG 143
L
Sbjct: 322 LH 323
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO,
delta-N-(phosphonoacetyl)-L- ornithine, agmatine
deiminase route, agmatine catabolism; HET: PAO PGE;
1.59A {Enterococcus faecalis}
Length = 339
Score = 36.8 bits (86), Expect = 0.002
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 65
Y V ++M +A + MH LP R E+ E D + F +AE + LL +
Sbjct: 272 YQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDG-KNSICFDEAENRLTSIRGLLVYL 330
Query: 66 LGRDSA 71
+ A
Sbjct: 331 MNDYEA 336
Score = 36.8 bits (86), Expect = 0.002
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLTMV 141
Y V ++M +A + MH LP R E+ E D + F +AE + LL +
Sbjct: 272 YQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDG-KNSICFDEAENRLTSIRGLLVYL 330
Query: 142 LGRDSA 147
+ A
Sbjct: 331 MNDYEA 336
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.80A {Coccidioides immitis}
Length = 353
Score = 34.1 bits (79), Expect = 0.011
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 9 YIVTPKIM--TKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLT 63
+ VT ++ AK MH LP E++ E F S R+ F +AE ++ ++ L
Sbjct: 286 FKVTSELAKRGGAKENWKFMHCLPRHPE-EVSDEVFYS-ERSLVFPEAENRLWAAISALE 343
Query: 64 MVLG 67
+
Sbjct: 344 AFVV 347
Score = 34.1 bits (79), Expect = 0.011
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 85 YIVTPKIM--TKAKSKMAVMHPLP--RVFEIAPE-FDSDPRAAYFRQAEYGMYVRMALLT 139
+ VT ++ AK MH LP E++ E F S R+ F +AE ++ ++ L
Sbjct: 286 FKVTSELAKRGGAKENWKFMHCLPRHPE-EVSDEVFYS-ERSLVFPEAENRLWAAISALE 343
Query: 140 MVLG 143
+
Sbjct: 344 AFVV 347
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine
transcarbamoylase, hydrolase; 2.50A {Mycoplasma
penetrans} PDB: 4anf_A
Length = 365
Score = 30.7 bits (70), Expect = 0.16
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 28/86 (32%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--------------------------RVFEIAPE-FDS 41
+ V ++ AK+ + +H LP E+ E F S
Sbjct: 280 FQVDMNMIKAAKNDVIFLHCLPAFHDDHTSFSKEVATTLGAKYPIVAKGEMEVTDEVFQS 339
Query: 42 DPRAAYFRQAEYGMYVRMALLTMVLG 67
F QAE M+ A++ +G
Sbjct: 340 -LHNKAFDQAENRMHSIKAIILSTIG 364
Score = 30.7 bits (70), Expect = 0.16
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 28/86 (32%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--------------------------RVFEIAPE-FDS 117
+ V ++ AK+ + +H LP E+ E F S
Sbjct: 280 FQVDMNMIKAAKNDVIFLHCLPAFHDDHTSFSKEVATTLGAKYPIVAKGEMEVTDEVFQS 339
Query: 118 DPRAAYFRQAEYGMYVRMALLTMVLG 143
F QAE M+ A++ +G
Sbjct: 340 -LHNKAFDQAENRMHSIKAIILSTIG 364
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal
binding-site, hexamer, cytoplasm, arginine metabolism;
2.10A {Lactobacillus hilgardii}
Length = 359
Score = 28.0 bits (63), Expect = 1.5
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 24/82 (29%)
Query: 9 YIVTPKIMTKA---KSKMAVMHPLP-------------------RVFEIAPE-FDSDPRA 45
Y V + M K ++ MH LP E+ E F S A
Sbjct: 272 YQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGKEIKEKYGITEMEVTDEVFTS-KYA 330
Query: 46 AYFRQAEYGMYVRMALLTMVLG 67
F +AE M+ A++ LG
Sbjct: 331 RQFEEAENRMHSIKAMMAATLG 352
Score = 28.0 bits (63), Expect = 1.5
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 24/82 (29%)
Query: 85 YIVTPKIMTKA---KSKMAVMHPLP-------------------RVFEIAPE-FDSDPRA 121
Y V + M K ++ MH LP E+ E F S A
Sbjct: 272 YQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGKEIKEKYGITEMEVTDEVFTS-KYA 330
Query: 122 AYFRQAEYGMYVRMALLTMVLG 143
F +AE M+ A++ LG
Sbjct: 331 RQFEEAENRMHSIKAMMAATLG 352
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex,
transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP:
c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Length = 333
Score = 27.5 bits (62), Expect = 1.7
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 23/82 (28%)
Query: 9 YIVTPKIMTK-AKSKMAVMHPLP--------------------RVFEIAPE-FDSDPRAA 46
Y V K+M ++ +H LP E+ E F+S +
Sbjct: 253 YQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFES-AASI 311
Query: 47 YFRQAEYGMYVRMALLTMVLGR 68
F QAE M+ A++ L +
Sbjct: 312 VFDQAENRMHTIKAVMVATLSK 333
Score = 27.5 bits (62), Expect = 1.7
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 23/82 (28%)
Query: 85 YIVTPKIMTK-AKSKMAVMHPLP--------------------RVFEIAPE-FDSDPRAA 122
Y V K+M ++ +H LP E+ E F+S +
Sbjct: 253 YQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFES-AASI 311
Query: 123 YFRQAEYGMYVRMALLTMVLGR 144
F QAE M+ A++ L +
Sbjct: 312 VFDQAENRMHTIKAVMVATLSK 333
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 26.5 bits (59), Expect = 4.0
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 4/23 (17%)
Query: 23 MAVMHPLPRVFEIAPEFDSDPRA 45
++ RV+EI P F RA
Sbjct: 238 QLIVADFERVYEIGPVF----RA 256
Score = 26.5 bits (59), Expect = 4.0
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 4/23 (17%)
Query: 99 MAVMHPLPRVFEIAPEFDSDPRA 121
++ RV+EI P F RA
Sbjct: 238 QLIVADFERVYEIGPVF----RA 256
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 26.7 bits (59), Expect = 4.1
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 23 MAVMHPLPRVFEIAPEFDSDPRA 45
MA+M +VFE+ P F RA
Sbjct: 304 MAIMGDFRKVFEVGPVF----RA 322
Score = 26.7 bits (59), Expect = 4.1
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 99 MAVMHPLPRVFEIAPEFDSDPRA 121
MA+M +VFE+ P F RA
Sbjct: 304 MAIMGDFRKVFEVGPVF----RA 322
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 25.7 bits (57), Expect = 7.7
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 16 MTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAY---------FRQAEYGMYV--RMALLTM 64
MT+ ++ + P AP + DP A F E +V R ++
Sbjct: 1 MTQEQANQSETKPAFDFKPFAPGYAEDPFPAIERLREATPIFYWDEGRSWVLTRYHDVSA 60
Query: 65 VLGRDSAL 72
V RD
Sbjct: 61 VF-RDERF 67
Score = 25.7 bits (57), Expect = 7.7
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 92 MTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAY---------FRQAEYGMYV--RMALLTM 140
MT+ ++ + P AP + DP A F E +V R ++
Sbjct: 1 MTQEQANQSETKPAFDFKPFAPGYAEDPFPAIERLREATPIFYWDEGRSWVLTRYHDVSA 60
Query: 141 VLGRDSAL 148
V RD
Sbjct: 61 VF-RDERF 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.393
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,330,865
Number of extensions: 130852
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 58
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.0 bits)