RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4400
(157 letters)
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase
catalytic subunit {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 157
Score = 80.3 bits (197), Expect = 2e-20
Identities = 35/70 (50%), Positives = 43/70 (61%)
Query: 74 YSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYV 133
K G Y V K++ KAK ++ +MHPLPRV EI PE D+ A YFRQ G+ V
Sbjct: 86 DEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRVDEIHPEVDNTKHAIYFRQVFNGVPV 145
Query: 134 RMALLTMVLG 143
RMALL +VLG
Sbjct: 146 RMALLALVLG 155
Score = 78.3 bits (192), Expect = 1e-19
Identities = 34/62 (54%), Positives = 42/62 (67%)
Query: 6 CGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMV 65
G Y V K++ KAK ++ +MHPLPRV EI PE D+ A YFRQ G+ VRMALL +V
Sbjct: 94 KGSYQVNLKVLEKAKDELRIMHPLPRVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALV 153
Query: 66 LG 67
LG
Sbjct: 154 LG 155
>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase
catalytic subunit {Escherichia coli [TaxId: 562]}
Length = 310
Score = 83.4 bits (205), Expect = 2e-20
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 6 CGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMV 65
+++ + AK+ M V+HPLPRV EIA + D P A YF+QA G++ R ALL +V
Sbjct: 244 KAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALV 303
Query: 66 LGRDSAL 72
L RD L
Sbjct: 304 LNRDLVL 310
Score = 83.4 bits (205), Expect = 2e-20
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 82 CGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMV 141
+++ + AK+ M V+HPLPRV EIA + D P A YF+QA G++ R ALL +V
Sbjct: 244 KAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALV 303
Query: 142 LGRDSAL 148
L RD L
Sbjct: 304 LNRDLVL 310
>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase
catalytic subunit {Escherichia coli [TaxId: 562]}
Length = 160
Score = 75.2 bits (184), Expect = 2e-18
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 6 CGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMV 65
+++ + AK+ M V+HPLPRV EIA + D P A YF+QA G++ R ALL +V
Sbjct: 94 KAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALV 153
Query: 66 LGRDSAL 72
L RD L
Sbjct: 154 LNRDLVL 160
Score = 75.2 bits (184), Expect = 2e-18
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 82 CGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMV 141
+++ + AK+ M V+HPLPRV EIA + D P A YF+QA G++ R ALL +V
Sbjct: 94 KAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALV 153
Query: 142 LGRDSAL 148
L RD L
Sbjct: 154 LNRDLVL 160
>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase
catalytic subunit {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 153
Score = 71.7 bits (175), Expect = 4e-17
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 6 CGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMV 65
G YIV+ + K K ++HPLPRV EI + D +A YF QA YG+ VRM++LT +
Sbjct: 91 KGSYIVSLDLANKMKKDSIILHPLPRVNEIDRKVDKTTKAKYFEQASYGVPVRMSILTKI 150
Query: 66 LG 67
G
Sbjct: 151 YG 152
Score = 71.7 bits (175), Expect = 4e-17
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 82 CGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMV 141
G YIV+ + K K ++HPLPRV EI + D +A YF QA YG+ VRM++LT +
Sbjct: 91 KGSYIVSLDLANKMKKDSIILHPLPRVNEIDRKVDKTTKAKYFEQASYGVPVRMSILTKI 150
Query: 142 LG 143
G
Sbjct: 151 YG 152
>gi|154685965|ref|YP_001421126.1|(145-295:304) aspartate
carbamoyltransferase catalytic subunit [Bacillus
amyloliquefaciens FZB42]
gi|166234047|sp|A7Z4G9.1|PYRB_BACA2 RecName:
Full=Aspartate carbamoyltransferase; AltName:
Full=Aspartate transcarbamylase; Short=ATCase
gi|154351816|gb|ABS73895.1| PyrB [Bacillus
amyloliquefaciens FZB42] E=8e-68 s/c=1.71 id=80%
cov=101%
Length = 151
Score = 63.6 bits (154), Expect = 3e-14
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 76 NTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYV 133
K Y +T K K +MHP P R EI ++ F+Q E G+Y+
Sbjct: 77 ADQKGYLEAYGLTAKRAESMKRHAIIMHPAPVNRGVEIDTTLVECGKSRIFKQMENGVYI 136
Query: 134 RMALLTMVLGRD 145
RMA+L L +
Sbjct: 137 RMAVLKRALQTN 148
Score = 62.9 bits (152), Expect = 6e-14
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 6 CGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLT 63
Y +T K K +MHP P R EI ++ F+Q E G+Y+RMA+L
Sbjct: 83 LEAYGLTAKRAESMKRHAIIMHPAPVNRGVEIDTTLVECGKSRIFKQMENGVYIRMAVLK 142
Query: 64 MVLGRD 69
L +
Sbjct: 143 RALQTN 148
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 163
Score = 64.0 bits (155), Expect = 4e-14
Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 14/144 (9%)
Query: 4 LSCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLT 63
L + + TP+ + + + E DP A V+ A +
Sbjct: 27 LGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKA----------VKDADVI 76
Query: 64 MVLGRDSALTYSNTPK--KSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDP 119
S + + K + V ++ AK MH LP R E+ + P
Sbjct: 77 YTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSP 136
Query: 120 RAAYFRQAEYGMYVRMALLTMVLG 143
+ + QAE ++ + A+L +V+G
Sbjct: 137 NSVVWDQAENRLHAQKAVLALVMG 160
>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 62.5 bits (151), Expect = 1e-13
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 76 NTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP-RVFEIAPEFDSDPRAAYFRQAEYGMYVR 134
++ Y VT K A S +H LP + E+ E PR+ F +AE +
Sbjct: 91 KKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTI 150
Query: 135 MALLTMVLG 143
MA++ +L
Sbjct: 151 MAVMVSLLT 159
Score = 61.3 bits (148), Expect = 4e-13
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 CGLYIVTPKIMTKAKSKMAVMHPLP-RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTM 64
Y VT K A S +H LP + E+ E PR+ F +AE + MA++
Sbjct: 97 FQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVS 156
Query: 65 VLG 67
+L
Sbjct: 157 LLT 159
>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 61.0 bits (147), Expect = 4e-13
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 9 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 66
+ + KS+ MH LP + E+ E ++ + +AE + A++ L
Sbjct: 101 QVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATL 160
Score = 61.0 bits (147), Expect = 4e-13
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 85 YIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVL 142
+ + KS+ MH LP + E+ E ++ + +AE + A++ L
Sbjct: 101 QVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATL 160
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 185
Score = 58.3 bits (140), Expect = 7e-12
Identities = 24/161 (14%), Positives = 42/161 (26%), Gaps = 27/161 (16%)
Query: 4 LSCGLYIVTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLT 63
L + I PK + +A DP+ A + +V +
Sbjct: 29 LGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAV----KGVDFVHTDVWV 84
Query: 64 MVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVMHPLP----------------- 106
+ + + K+ + + + MH LP
Sbjct: 85 SM--GEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQY 142
Query: 107 ----RVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLG 143
E+ + P F QAE M+ A+L L
Sbjct: 143 PNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLA 183
Score = 53.7 bits (128), Expect = 4e-10
Identities = 14/88 (15%), Positives = 21/88 (23%), Gaps = 21/88 (23%)
Query: 1 MDNLSCGLYIVTPKIMTKAKSKMAVMHPLP---------------------RVFEIAPEF 39
+ + + MH LP E+ +
Sbjct: 96 RIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGIEVTEDV 155
Query: 40 DSDPRAAYFRQAEYGMYVRMALLTMVLG 67
P F QAE M+ A+L L
Sbjct: 156 FESPYNIAFEQAENRMHTIKAILVSTLA 183
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase
{Escherichia coli [TaxId: 562]}
Length = 183
Score = 57.5 bits (138), Expect = 1e-11
Identities = 14/58 (24%), Positives = 20/58 (34%)
Query: 11 VTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 68
T KMA L E+ E + F QAE M+ A++ L +
Sbjct: 126 AFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK 183
Score = 57.5 bits (138), Expect = 1e-11
Identities = 14/58 (24%), Positives = 20/58 (34%)
Query: 87 VTPKIMTKAKSKMAVMHPLPRVFEIAPEFDSDPRAAYFRQAEYGMYVRMALLTMVLGR 144
T KMA L E+ E + F QAE M+ A++ L +
Sbjct: 126 AFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK 183
>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein
{Bacteroides fragilis [TaxId: 817]}
Length = 161
Score = 53.2 bits (127), Expect = 4e-10
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 2/67 (2%)
Query: 79 KKSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVRMA 136
S + MH LP R + + P++ +A
Sbjct: 86 ILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATV 145
Query: 137 LLTMVLG 143
+L +L
Sbjct: 146 VLKRLLE 152
Score = 52.4 bits (125), Expect = 7e-10
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 1 MDNLSCGLYIVTPKIMTKAKSKMAVMHPLP--RVFEIAPEFDSDPRAAYFRQAEYGMYVR 58
LS + MH LP R + + P++ +A
Sbjct: 84 GQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISA 143
Query: 59 MALLTMVLG 67
+L +L
Sbjct: 144 TVVLKRLLE 152
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 340
Score = 24.6 bits (53), Expect = 7.5
Identities = 18/93 (19%), Positives = 26/93 (27%), Gaps = 7/93 (7%)
Query: 43 PRAAYFRQAEYGMYVRMALLTMVLGRDSALTYSNTPKKSCGLYIVTPKIMTKAKSKMAVM 102
AA F YG + A G P GL + + ++
Sbjct: 206 SYAAKFSGNLYGPFRDAACSAPSNGDRKC---YQLPPAGRGLARRALERDMSEGADGIIV 262
Query: 103 HP----LPRVFEIAPEFDSDPRAAYFRQAEYGM 131
P L + + + P AY EY M
Sbjct: 263 KPSTFYLDIMRDASEICKDLPICAYHVSGEYAM 295
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.134 0.393
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 554,811
Number of extensions: 23490
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 24
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.2 bits)