Query psy4401
Match_columns 147
No_of_seqs 150 out of 606
Neff 4.8
Searched_HMMs 29240
Date Sat Aug 17 00:37:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 99.8 1.1E-22 3.9E-27 148.5 1.8 52 1-52 46-100 (102)
2 2hdc_A Protein (transcription 99.8 4.6E-23 1.6E-27 149.4 -0.8 50 1-50 45-97 (97)
3 1kq8_A HFH-1, hepatocyte nucle 99.8 1.2E-22 4.2E-27 147.8 -0.0 50 1-50 45-98 (100)
4 2hfh_A Genesis, HFH-2; HNF-3 h 99.8 2.3E-22 8E-27 148.5 -1.0 53 1-53 46-101 (109)
5 2c6y_A Forkhead box protein K2 99.8 3E-22 1E-26 148.3 -1.1 50 1-50 59-111 (111)
6 1e17_A AFX; DNA binding domain 99.7 3.5E-19 1.2E-23 137.9 0.8 48 1-50 88-135 (150)
7 3coa_C Forkhead box protein O1 99.7 2.7E-19 9.4E-24 133.5 0.1 46 1-48 59-104 (117)
8 3bpy_A FORK head domain, forkh 99.7 4E-18 1.4E-22 120.7 0.1 33 1-35 53-85 (85)
9 3l2c_A Forkhead box protein O4 99.7 7.1E-18 2.4E-22 124.5 0.1 36 1-38 72-107 (110)
10 2a07_F Forkhead box protein P2 99.6 5.9E-18 2E-22 121.8 -2.9 35 1-40 46-80 (93)
11 3g73_A Forkhead box protein M1 99.6 1.6E-16 5.5E-21 121.9 0.3 45 1-48 62-110 (142)
12 2y9w_C Lectin-like fold protei 36.1 15 0.00052 27.1 1.7 21 14-37 104-124 (150)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=99.85 E-value=1.1e-22 Score=148.51 Aligned_cols=52 Identities=52% Similarity=0.809 Sum_probs=48.0
Q ss_pred CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccCCC
Q psy4401 1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVRRK 52 (147)
Q Consensus 1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r~~ 52 (147)
.||||||||||||+||+||+|..+++|||+||+|+++ +|.+|.++||++|.+
T Consensus 46 gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~p~~~~~f~~g~~~rr~~~~~ 100 (102)
T 1vtn_C 46 RWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFK 100 (102)
T ss_dssp HHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEECGGGCSTTCSSCSSSCSSCCC
T ss_pred chhhhhhhhhhhccceEecCCCCCCCCCcceEEECcCHHHHhhcCCeeccccccc
Confidence 4999999999999999999999988999999999998 788999988888755
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.85 E-value=4.6e-23 Score=149.40 Aligned_cols=50 Identities=54% Similarity=0.926 Sum_probs=46.5
Q ss_pred CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccC
Q psy4401 1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVR 50 (147)
Q Consensus 1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r 50 (147)
.||||||||||||+||+||+|..+++|||+||+|+++ +|.+|.++|||+|
T Consensus 45 gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p~~~~~f~~g~~~rrr~r 97 (97)
T 2hdc_A 45 AWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97 (97)
T ss_dssp SHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCTTHHHHHHHSCCCSSSCC
T ss_pred ceehhhhhhhhhhhheeecCCCCCCCCCcceEEECcCHHHHHhCCCccCCCCC
Confidence 5999999999999999999999988999999999998 7889999888764
No 3
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.84 E-value=1.2e-22 Score=147.83 Aligned_cols=50 Identities=48% Similarity=0.791 Sum_probs=34.7
Q ss_pred CccccccccccCCCceEeccCCCCCC-CCceeeecCcc---ccccCCccccccC
Q psy4401 1 MRVNSIRHNLSLNKCFVKVPRSKDQP-GKGGFWKLDLQ---KLEEGGGRYRNVR 50 (147)
Q Consensus 1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~-GKg~~W~l~~~---~~~~g~~rrr~~r 50 (147)
.||||||||||||+||+||+|..+++ |||+||+|+|+ +|.+|.++||++|
T Consensus 45 gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~p~~~~~f~~g~~~rrr~r 98 (100)
T 1kq8_A 45 GWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRYR 98 (100)
T ss_dssp CCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECCC-----------------
T ss_pred ceecccchheehhheeeecCCCCCCCCCCCeEEEECcCHHHHHhCCCcccCCCC
Confidence 59999999999999999999998888 99999999998 6899999988876
No 4
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.83 E-value=2.3e-22 Score=148.50 Aligned_cols=53 Identities=53% Similarity=0.873 Sum_probs=42.6
Q ss_pred CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccCCCc
Q psy4401 1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVRRKS 53 (147)
Q Consensus 1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r~~~ 53 (147)
.||||||||||||+||+||+|..+++|||+||+|+++ +|.+|.++|||++.+.
T Consensus 46 gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p~~~~~f~~g~~~Rrr~~~~~ 101 (109)
T 2hfh_A 46 AWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKR 101 (109)
T ss_dssp GGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCTTCCHHHHSSSCC--------
T ss_pred ccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECccHHHHHhCCCcccCcccccc
Confidence 4999999999999999999999989999999999998 6789999888876543
No 5
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=99.82 E-value=3e-22 Score=148.26 Aligned_cols=50 Identities=58% Similarity=0.915 Sum_probs=45.8
Q ss_pred CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccC
Q psy4401 1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVR 50 (147)
Q Consensus 1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r 50 (147)
.||||||||||||+||+||+|..+++|||+||+|+++ +|.++.+||||+|
T Consensus 59 gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p~~~~~~~~~~~r~rr~r 111 (111)
T 2c6y_A 59 GWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111 (111)
T ss_dssp HHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEECHHHHHHHHHHHTCCCCCC
T ss_pred eeecchhHHhhhhhhhccccCCCCCCCCcceEEeChhHHHhhhcccccccCCC
Confidence 4999999999999999999999888999999999998 6788888888764
No 6
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=99.73 E-value=3.5e-19 Score=137.93 Aligned_cols=48 Identities=38% Similarity=0.547 Sum_probs=34.2
Q ss_pred CccccccccccCCCceEeccCCCCCCCCceeeecCccccccCCccccccC
Q psy4401 1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVR 50 (147)
Q Consensus 1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~~~~g~~rrr~~r 50 (147)
.||||||||||||+||+||+|+ ++|||+||+|++++...|..+||+..
T Consensus 88 gWqNSIRHNLSLnk~F~Kv~r~--~~GKG~~W~ldp~~~~~gk~~Rrr~~ 135 (150)
T 1e17_A 88 GWKNSIRHNLSLHSKFIKVHNE--ATGKSSWWMLNPEGGKSGKAPRRRAA 135 (150)
T ss_dssp HHHHHHHHHHHSSTTEEEECCT--TTSSSCEEEECTTCC-----------
T ss_pred chhhccceeeeeeeeeEecCCC--CCCCcceEEECcccccCCcccccccc
Confidence 3999999999999999999994 45999999999998777766666543
No 7
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=99.73 E-value=2.7e-19 Score=133.49 Aligned_cols=46 Identities=37% Similarity=0.571 Sum_probs=31.6
Q ss_pred CccccccccccCCCceEeccCCCCCCCCceeeecCccccccCCccccc
Q psy4401 1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRN 48 (147)
Q Consensus 1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~~~~g~~rrr~ 48 (147)
.||||||||||||+||+||+++ ++|||+||+|+++....+..+||+
T Consensus 59 gWqNSIRHNLSln~~F~Kv~~~--~~GKg~~W~l~p~~~~~~~~~Rrr 104 (117)
T 3coa_C 59 GWKNSIRHNLSLHSKFIRVQNE--GTGKSSWWMLNPEGGKSGKSPRRR 104 (117)
T ss_dssp HHHHHHHHHHHHCTTEEEECCS--STTCCCEEEECC------------
T ss_pred cchhccchheecchhhcccccC--CCCCcceEEECccccccCcccccc
Confidence 4999999999999999999985 459999999999976555544443
No 8
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=99.67 E-value=4e-18 Score=120.66 Aligned_cols=33 Identities=48% Similarity=0.764 Sum_probs=30.3
Q ss_pred CccccccccccCCCceEeccCCCCCCCCceeeecC
Q psy4401 1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35 (147)
Q Consensus 1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~ 35 (147)
.||||||||||||+||+||+|+ ++|||+||+||
T Consensus 53 gWqNSIRHNLSln~~F~Kv~r~--~~GKg~~W~ld 85 (85)
T 3bpy_A 53 GWKNSIRHNLSLHSKFIKVHNE--ATGKSSWWMLN 85 (85)
T ss_dssp HHHHHHHHHHHHCTTEEEECCC--STTCCCEEEEC
T ss_pred CcchhhhhhccHhhhheeCCCC--CCCCCCceecC
Confidence 3999999999999999999985 45999999986
No 9
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=99.66 E-value=7.1e-18 Score=124.51 Aligned_cols=36 Identities=44% Similarity=0.685 Sum_probs=30.7
Q ss_pred CccccccccccCCCceEeccCCCCCCCCceeeecCccc
Q psy4401 1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQK 38 (147)
Q Consensus 1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~ 38 (147)
.||||||||||||+||+||+|. ++|||+||+|++++
T Consensus 72 gWqNSIRHNLSln~~F~Kv~r~--~~GKG~~W~l~p~~ 107 (110)
T 3l2c_A 72 GWKNSIRHNLSLHSKFIKVHNE--ATGKSSWWMLNPEG 107 (110)
T ss_dssp HHHHHHHHHHHHCTTEEEECCC--STTCCCEEEEC---
T ss_pred CcccchhhhccHhhhheeCCCC--CCCCCceEEECccc
Confidence 3999999999999999999985 45999999999985
No 10
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=99.63 E-value=5.9e-18 Score=121.81 Aligned_cols=35 Identities=46% Similarity=0.833 Sum_probs=31.8
Q ss_pred CccccccccccCCCceEeccCCCCCCCCceeeecCccccc
Q psy4401 1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLE 40 (147)
Q Consensus 1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~~~ 40 (147)
.||||||||||||+||+||++ |||+||+|+++.+.
T Consensus 46 gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~~~~~~ 80 (93)
T 2a07_F 46 TWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDEVEYQ 80 (93)
T ss_dssp HHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCHHHHH
T ss_pred ccccccceeeehhhceeecCC-----CCCCeeEEChHHhh
Confidence 499999999999999999984 89999999998753
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=99.58 E-value=1.6e-16 Score=121.94 Aligned_cols=45 Identities=33% Similarity=0.423 Sum_probs=32.7
Q ss_pred CccccccccccCCCceEeccCCCCCCCCceeeecCccc----cccCCccccc
Q psy4401 1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQK----LEEGGGRYRN 48 (147)
Q Consensus 1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~----~~~g~~rrr~ 48 (147)
.||||||||||||+||+|+. +++|||+||+|+++. +.++.+++.+
T Consensus 62 gWqNSIRHNLSln~~F~r~~---~~~GKg~~W~i~p~~~~~l~~d~~~k~~~ 110 (142)
T 3g73_A 62 GWKNSIRHNLSLHDMFVRET---SANGKVSFWTIHPSANRYLTLDQVFKPLD 110 (142)
T ss_dssp THHHHHHHHHHHCTTEEEEE---CTTSCCEEEEECTTTCCCCCCC-------
T ss_pred CccchhhhhhhhhhhheecC---CCCCCCceEEECccccccchhhhhhcccc
Confidence 59999999999999999875 345999999999994 3445555443
No 12
>2y9w_C Lectin-like fold protein, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_E
Probab=36.06 E-value=15 Score=27.06 Aligned_cols=21 Identities=29% Similarity=0.832 Sum_probs=17.6
Q ss_pred CceEeccCCCCCCCCceeeecCcc
Q psy4401 14 KCFVKVPRSKDQPGKGGFWKLDLQ 37 (147)
Q Consensus 14 ~~F~Kv~r~~~~~GKg~~W~l~~~ 37 (147)
+.+++|||++ |.|..|+|.|.
T Consensus 104 efwirvpreg---gggavwtikpa 124 (150)
T 2y9w_C 104 EFWIRVPREG---GGGAVWTIKPA 124 (150)
T ss_dssp EEEEECCCTT---SCCCEEEEEES
T ss_pred EEEEECcccC---CCeeEEEeccc
Confidence 5678999876 68999999876
Done!