RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4401
         (147 letters)



>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 97

 Score = 59.5 bits (144), Expect = 3e-13
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEG-GGRYRNVRRK 52
          NSIRHNLSLN CFVK+PR    PGKG +W LD Q  +    G +   R++
Sbjct: 48 NSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97


>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 59.5 bits (144), Expect = 4e-13
 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD---LQKLEEGGGRYRNVR 50
          NSIRHNLSLN+ F+KVPRS+++PGKG FW++D     KL E   R R  R
Sbjct: 49 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98


>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11
          (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 56.0 bits (135), Expect = 6e-12
 Identities = 24/32 (75%), Positives = 27/32 (84%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          NSIRHNLSLN+CFVKVPR   +PGKG +W LD
Sbjct: 50 NSIRHNLSLNECFVKVPRDDKKPGKGSYWTLD 81


>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 75

 Score = 52.2 bits (125), Expect = 1e-10
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQP-GKGGFWKLD 35
          NS+RHNLSLN CFVKV R   +P GK  +W L+
Sbjct: 42 NSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 74


>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 85

 Score = 51.8 bits (124), Expect = 2e-10
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          NSIRHNLSL+  F+KV    +  GK  +W L+
Sbjct: 56 NSIRHNLSLHSKFIKVHN--EATGKSSWWMLN 85


>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 47.9 bits (114), Expect = 6e-09
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 5/38 (13%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEE 41
          N++RHNLSL+KCFV+V        KG  W +D  + ++
Sbjct: 48 NAVRHNLSLHKCFVRVEN-----VKGAVWTVDEVEYQK 80


>d2c2ia1 d.38.1.4 (A:2-150) Hypothetical protein Rv0130
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 149

 Score = 25.1 bits (54), Expect = 2.8
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 87  ENLNKLEDKLDDTLMESEISMTDDIDEDLILSNILLSGDSYWIH 130
           E++  L     + + +S+  +T  I ++ +      +GD  WIH
Sbjct: 4   ESVADLAAAAGEKVGQSD-WVT--ITQEEVNLFADATGDHQWIH 44


>d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) {Aquifex
           pyrophilus [TaxId: 2714]}
          Length = 89

 Score = 23.4 bits (50), Expect = 7.7
 Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 87  ENLNKLEDKLDDTLMESEISMTDDIDE-DLILSNILLSGDSYWIHE 131
              N++++KL D           +  E   +      +     +HE
Sbjct: 36  AKYNEIQEKLADQNFADRSKANQNYSEYRELKVEETFNYMGVVLHE 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 539,446
Number of extensions: 23019
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 9
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.9 bits)