BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4403
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QEX|A Chain A, Bacteriophage T4 Gene Product 9 (gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector
pdb|1QEX|B Chain B, Bacteriophage T4 Gene Product 9 (gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector
pdb|1PDP|A Chain A, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|B Chain B, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|C Chain C, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|D Chain D, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|E Chain E, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|F Chain F, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|G Chain G, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|H Chain H, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|I Chain I, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|J Chain J, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|K Chain K, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|L Chain L, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|M Chain M, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|N Chain N, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|O Chain O, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|P Chain P, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|Q Chain Q, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|R Chain R, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1S2E|A Chain A, Bacteriophage T4 Gene Product 9 (Gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector,
Alternative Fit Of The First 19 Residues
pdb|1S2E|B Chain B, Bacteriophage T4 Gene Product 9 (Gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector,
Alternative Fit Of The First 19 Residues
pdb|1TJA|C Chain C, Fitting Of Gp8, Gp9, And Gp11 Into The Cryo-em
Reconstruction Of The Bacteriophage T4 Contracted Tail
pdb|1TJA|D Chain D, Fitting Of Gp8, Gp9, And Gp11 Into The Cryo-em
Reconstruction Of The Bacteriophage T4 Contracted Tail
pdb|1TJA|E Chain E, Fitting Of Gp8, Gp9, And Gp11 Into The Cryo-em
Reconstruction Of The Bacteriophage T4 Contracted Tail
pdb|1ZKU|A Chain A, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|B Chain B, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|C Chain C, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|D Chain D, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|E Chain E, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|F Chain F, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|G Chain G, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|H Chain H, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|I Chain I, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|J Chain J, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|K Chain K, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|L Chain L, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|M Chain M, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|N Chain N, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|O Chain O, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|P Chain P, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|Q Chain Q, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|R Chain R, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
Length = 288
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 55 KEYLRYCVDYDNSAPNSKYCVQSMLGSQQESP 86
K LR C+ DNS Y ++SM G Q+ESP
Sbjct: 145 KVTLR-CISSDNSTSVWNYSIESMFG-QKESP 174
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 60 YCVDYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTL 97
+ V D+ AP++ Y VQ +Q+ G K E QTL
Sbjct: 492 FSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTL 529
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 60 YCVDYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTL 97
+ V D+ AP++ Y VQ +Q+ G K E QTL
Sbjct: 492 FSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTL 529
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 60 YCVDYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTL 97
+ V D+ AP++ Y VQ +Q+ G K E QTL
Sbjct: 495 FSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTL 532
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,935,148
Number of Sequences: 62578
Number of extensions: 98664
Number of successful extensions: 151
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 4
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)