BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4403
         (101 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens
           GN=DUS2L PE=1 SV=1
          Length = 493

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 2/98 (2%)

Query: 4   SGGSKE-IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
           +GGS + I  Y  I  F+  T ASSVM+ARAA  N SIF   +G++ + +++++Y+RY V
Sbjct: 214 NGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFL-KEGLRPLEEVMQKYIRYAV 272

Query: 63  DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
            YDN   N+KYC+  ML  Q ESP G+    +Q+  +I
Sbjct: 273 QYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSREI 310


>sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus
           GN=Dus2l PE=1 SV=1
          Length = 493

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 2/98 (2%)

Query: 4   SGGSKE-IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
           +GGS + I  +  I  F+  T ASSVM+ARAA  N SIF    G++ + +++++Y+RY V
Sbjct: 214 NGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWNPSIFL-KDGLRPLEEVMQKYIRYAV 272

Query: 63  DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
            YDN   N+KYC+  ML  Q ESP G+    +Q+ ++I
Sbjct: 273 QYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSQEI 310


>sp|O74731|DUS2_SCHPO tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=dus2 PE=3 SV=1
          Length = 479

 Score = 38.5 bits (88), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 9   EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSA 68
           +++ Y   L          V+IARAA+ N S F   +G     ++ +E+L+  ++ DN+ 
Sbjct: 223 DVLSYNDGLDVIEKYGVDGVLIARAAERNVSCFR-IEGPLSSFKVAEEFLKMALEVDNNF 281

Query: 69  PNSKYCV-QSMLGS 81
            N+KYC+ Q M GS
Sbjct: 282 GNTKYCLNQIMQGS 295


>sp|O67533|DUS_AQUAE Probable tRNA-dihydrouridine synthase OS=Aquifex aeolicus (strain
           VF5) GN=dus PE=3 SV=1
          Length = 316

 Score = 30.4 bits (67), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 3   PSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
           P  GS ++  +  I +   +T    VM+ RAA  N  IF   K  +DI   +KE + + +
Sbjct: 193 PIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKEFKEKRDIEVGLKERMDFIL 252

Query: 63  D 63
           +
Sbjct: 253 E 253


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,702,214
Number of Sequences: 539616
Number of extensions: 1230027
Number of successful extensions: 2366
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2361
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)