Query psy4403
Match_columns 101
No_of_seqs 113 out of 1137
Neff 7.7
Searched_HMMs 46136
Date Sat Aug 17 00:39:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10550 tRNA-dihydrouridine s 99.9 3.6E-22 7.7E-27 147.4 7.6 97 1-100 197-303 (312)
2 PRK10415 tRNA-dihydrouridine s 99.9 5.6E-22 1.2E-26 146.7 6.8 97 1-100 197-309 (321)
3 COG0042 tRNA-dihydrouridine sy 99.8 2.7E-21 5.9E-26 143.3 7.4 97 1-100 201-310 (323)
4 KOG2335|consensus 99.8 7.5E-20 1.6E-24 135.8 7.1 95 1-98 206-304 (358)
5 PF01207 Dus: Dihydrouridine s 99.8 5.7E-21 1.2E-25 140.6 1.0 97 1-100 186-297 (309)
6 TIGR00742 yjbN tRNA dihydrouri 99.8 3.1E-19 6.6E-24 132.1 6.5 92 1-97 198-301 (318)
7 TIGR00737 nifR3_yhdG putative 99.8 1.8E-18 3.8E-23 127.6 7.7 97 1-100 195-307 (319)
8 KOG2334|consensus 99.7 1.8E-17 4E-22 125.2 4.3 99 1-100 212-311 (477)
9 PRK11815 tRNA-dihydrouridine s 99.7 4.5E-17 9.7E-22 121.1 5.5 92 1-97 208-311 (333)
10 KOG2333|consensus 99.5 1.6E-14 3.6E-19 111.0 4.4 65 1-68 457-529 (614)
11 cd02911 arch_FMN Archeal FMN-b 99.2 8.8E-12 1.9E-16 88.9 1.9 38 1-44 194-231 (233)
12 cd02801 DUS_like_FMN Dihydrour 99.0 1.8E-10 3.9E-15 80.8 2.0 41 1-44 186-226 (231)
13 TIGR00736 nifR3_rel_arch TIM-b 98.9 9.9E-10 2.1E-14 78.4 2.4 33 1-37 194-226 (231)
14 TIGR01037 pyrD_sub1_fam dihydr 98.8 3.4E-09 7.3E-14 77.5 2.9 39 1-43 237-275 (300)
15 cd04734 OYE_like_3_FMN Old yel 98.7 4.3E-09 9.3E-14 78.7 1.3 41 1-44 288-328 (343)
16 cd04741 DHOD_1A_like Dihydroor 98.6 1.5E-08 3.3E-13 74.3 0.9 40 1-44 246-286 (294)
17 cd04740 DHOD_1B_like Dihydroor 98.5 9.5E-08 2.1E-12 69.7 2.9 39 1-43 234-272 (296)
18 cd02810 DHOD_DHPD_FMN Dihydroo 98.4 7.1E-08 1.5E-12 70.0 0.2 40 1-44 246-286 (289)
19 PRK07259 dihydroorotate dehydr 98.3 2.6E-07 5.7E-12 67.7 2.5 39 1-43 237-275 (301)
20 cd02931 ER_like_FMN Enoate red 98.3 1.5E-07 3.3E-12 71.3 1.3 40 2-44 309-348 (382)
21 cd02929 TMADH_HD_FMN Trimethyl 98.3 1.6E-07 3.6E-12 70.9 1.1 41 1-44 292-332 (370)
22 PRK13523 NADPH dehydrogenase N 98.3 1.2E-07 2.6E-12 71.0 -0.0 41 1-44 278-318 (337)
23 cd02930 DCR_FMN 2,4-dienoyl-Co 98.3 1.3E-07 2.9E-12 70.8 0.1 40 2-44 280-319 (353)
24 cd04733 OYE_like_2_FMN Old yel 98.3 3.1E-07 6.7E-12 68.4 1.3 40 1-43 295-334 (338)
25 cd02940 DHPD_FMN Dihydropyrimi 98.3 2.8E-07 6E-12 67.7 1.0 40 1-44 255-295 (299)
26 PRK08255 salicylyl-CoA 5-hydro 98.2 5.6E-07 1.2E-11 73.4 1.5 40 1-43 690-730 (765)
27 cd02803 OYE_like_FMN_family Ol 98.2 5.6E-07 1.2E-11 66.3 1.0 39 2-43 285-323 (327)
28 cd04738 DHOD_2_like Dihydrooro 98.2 3E-07 6.5E-12 68.4 -0.7 39 2-44 284-323 (327)
29 cd04735 OYE_like_4_FMN Old yel 98.1 3.6E-07 7.8E-12 68.6 -0.4 40 1-44 287-326 (353)
30 PRK05286 dihydroorotate dehydr 98.1 5.6E-07 1.2E-11 67.4 0.4 38 2-43 293-331 (344)
31 cd02933 OYE_like_FMN Old yello 98.1 1.4E-06 3E-11 65.2 1.4 40 1-44 288-327 (338)
32 PRK14024 phosphoribosyl isomer 98.1 2.1E-06 4.6E-11 61.3 2.3 35 1-38 193-229 (241)
33 PRK08318 dihydropyrimidine deh 98.0 1.4E-06 3E-11 66.7 1.0 40 1-44 256-296 (420)
34 cd02932 OYE_YqiM_FMN Old yello 98.0 3.3E-06 7E-11 62.9 1.7 39 2-43 294-332 (336)
35 cd04747 OYE_like_5_FMN Old yel 98.0 2E-06 4.4E-11 65.0 0.3 35 10-44 307-341 (361)
36 PRK00748 1-(5-phosphoribosyl)- 97.9 8.8E-06 1.9E-10 57.3 2.6 34 1-37 193-226 (233)
37 PRK02083 imidazole glycerol ph 97.8 7.8E-06 1.7E-10 58.6 1.4 39 2-44 78-116 (253)
38 PRK07565 dihydroorotate dehydr 97.8 1.4E-05 3.1E-10 59.5 2.6 39 1-43 242-281 (334)
39 cd04732 HisA HisA. Phosphorib 97.8 1.8E-05 3.9E-10 55.7 2.9 34 2-39 194-227 (234)
40 cd04739 DHOD_like Dihydroorota 97.7 1.1E-05 2.3E-10 60.2 1.1 39 1-43 240-279 (325)
41 TIGR00007 phosphoribosylformim 97.7 2.3E-05 4.9E-10 55.2 2.7 32 2-37 193-224 (230)
42 cd04731 HisF The cyclase subun 97.6 1.8E-05 3.9E-10 56.2 1.2 39 2-44 75-113 (243)
43 cd04731 HisF The cyclase subun 97.6 5E-05 1.1E-09 53.9 2.6 31 2-35 197-227 (243)
44 cd02809 alpha_hydroxyacid_oxid 97.5 4.8E-05 1E-09 55.9 1.7 34 1-43 230-263 (299)
45 PRK13585 1-(5-phosphoribosyl)- 97.5 6E-05 1.3E-09 53.4 2.0 38 2-43 197-234 (241)
46 cd04732 HisA HisA. Phosphorib 97.3 0.0001 2.2E-09 51.8 1.0 35 9-44 81-115 (234)
47 PRK01033 imidazole glycerol ph 97.2 0.00025 5.5E-09 51.2 2.9 33 1-36 199-231 (258)
48 TIGR00735 hisF imidazoleglycer 97.2 0.00012 2.5E-09 52.7 1.1 35 9-44 82-116 (254)
49 PRK02083 imidazole glycerol ph 97.2 0.00026 5.6E-09 50.7 2.3 32 1-35 200-231 (253)
50 TIGR02708 L_lactate_ox L-lacta 97.0 0.00039 8.4E-09 52.9 2.3 33 1-37 286-318 (367)
51 TIGR03572 WbuZ glycosyl amidat 96.8 0.0013 2.9E-08 46.3 3.0 28 7-34 203-230 (232)
52 PRK04180 pyridoxal biosynthesi 96.7 0.0038 8.1E-08 46.2 5.2 51 2-66 209-259 (293)
53 cd04737 LOX_like_FMN L-Lactate 96.7 0.001 2.2E-08 50.3 2.1 35 2-40 280-314 (351)
54 TIGR00735 hisF imidazoleglycer 96.4 0.0019 4.2E-08 46.4 2.1 30 2-34 203-232 (254)
55 TIGR00343 pyridoxal 5'-phospha 96.3 0.0033 7.1E-08 46.4 2.8 51 2-66 203-253 (287)
56 PF00724 Oxidored_FMN: NADH:fl 96.3 0.0018 3.8E-08 48.5 1.2 39 2-43 295-333 (341)
57 cd04727 pdxS PdxS is a subunit 96.3 0.0036 7.9E-08 46.1 2.7 50 2-65 200-249 (283)
58 PRK08649 inosine 5-monophospha 96.3 0.0035 7.5E-08 47.7 2.7 25 9-34 194-218 (368)
59 PRK10605 N-ethylmaleimide redu 96.3 0.0031 6.7E-08 47.8 2.4 39 2-44 296-334 (362)
60 PRK13585 1-(5-phosphoribosyl)- 96.2 0.0019 4.1E-08 45.7 1.1 35 9-44 84-118 (241)
61 TIGR01304 IMP_DH_rel_2 IMP deh 96.1 0.0055 1.2E-07 46.7 3.1 29 9-38 195-223 (369)
62 TIGR02151 IPP_isom_2 isopenten 96.1 0.0029 6.3E-08 47.3 1.5 33 2-38 258-290 (333)
63 cd04729 NanE N-acetylmannosami 95.9 0.0053 1.1E-07 43.0 2.2 35 2-40 181-215 (219)
64 cd00381 IMPDH IMPDH: The catal 95.9 0.007 1.5E-07 45.2 3.0 35 1-39 200-234 (325)
65 PRK05458 guanosine 5'-monophos 95.8 0.0073 1.6E-07 45.3 2.7 32 1-36 204-235 (326)
66 PRK02506 dihydroorotate dehydr 95.8 0.0036 7.8E-08 46.4 1.0 38 2-43 245-283 (310)
67 cd04730 NPD_like 2-Nitropropan 95.8 0.0089 1.9E-07 41.9 2.8 33 2-38 160-192 (236)
68 TIGR03572 WbuZ glycosyl amidat 95.5 0.0057 1.2E-07 43.1 0.9 35 9-44 82-116 (232)
69 PRK04128 1-(5-phosphoribosyl)- 95.5 0.0076 1.7E-07 42.9 1.5 34 8-43 80-113 (228)
70 PRK01130 N-acetylmannosamine-6 95.4 0.0092 2E-07 41.8 1.8 27 9-36 181-207 (221)
71 TIGR03151 enACPred_II putative 95.4 0.011 2.5E-07 43.8 2.3 32 1-36 164-195 (307)
72 TIGR01036 pyrD_sub2 dihydrooro 95.0 0.0039 8.4E-08 46.8 -1.1 35 8-43 295-330 (335)
73 PLN02411 12-oxophytodienoate r 94.5 0.027 5.8E-07 43.2 2.3 39 2-44 317-355 (391)
74 PRK05437 isopentenyl pyrophosp 94.4 0.028 6.1E-07 42.4 2.1 32 2-37 265-296 (352)
75 TIGR01306 GMP_reduct_2 guanosi 94.3 0.035 7.5E-07 41.7 2.4 30 1-34 201-230 (321)
76 COG0167 PyrD Dihydroorotate de 94.2 0.029 6.2E-07 41.9 1.8 36 7-43 247-283 (310)
77 cd04728 ThiG Thiazole synthase 94.1 0.043 9.4E-07 39.8 2.5 30 2-35 179-208 (248)
78 COG1902 NemA NADH:flavin oxido 94.1 0.043 9.3E-07 41.8 2.6 40 2-44 292-331 (363)
79 PRK00208 thiG thiazole synthas 94.1 0.043 9.4E-07 39.8 2.4 30 2-35 179-208 (250)
80 PRK00748 1-(5-phosphoribosyl)- 94.0 0.06 1.3E-06 37.7 3.1 34 9-43 82-115 (233)
81 cd00331 IGPS Indole-3-glycerol 94.0 0.047 1E-06 38.0 2.4 30 9-39 180-209 (217)
82 cd02811 IDI-2_FMN Isopentenyl- 93.9 0.041 9E-07 41.1 2.2 31 2-36 259-289 (326)
83 PRK01033 imidazole glycerol ph 93.6 0.041 8.9E-07 39.7 1.6 36 8-44 81-116 (258)
84 PRK07695 transcriptional regul 93.2 0.081 1.8E-06 36.5 2.6 30 2-36 153-182 (201)
85 PF01180 DHO_dh: Dihydroorotat 93.2 0.017 3.7E-07 42.2 -0.9 38 2-43 248-286 (295)
86 COG0106 HisA Phosphoribosylfor 93.0 0.084 1.8E-06 38.2 2.4 33 2-37 195-227 (241)
87 PLN02495 oxidoreductase, actin 92.9 0.12 2.5E-06 39.8 3.2 35 8-43 277-312 (385)
88 TIGR01919 hisA-trpF 1-(5-phosp 92.9 0.062 1.4E-06 38.6 1.6 34 9-43 82-115 (243)
89 COG0106 HisA Phosphoribosylfor 92.7 0.07 1.5E-06 38.6 1.7 36 8-44 82-117 (241)
90 PRK00278 trpC indole-3-glycero 92.7 0.12 2.5E-06 37.5 2.9 31 9-40 219-249 (260)
91 TIGR01304 IMP_DH_rel_2 IMP deh 92.6 0.08 1.7E-06 40.4 2.0 32 2-37 259-290 (369)
92 PRK04128 1-(5-phosphoribosyl)- 92.6 0.12 2.5E-06 36.8 2.7 29 2-34 186-214 (228)
93 PRK14024 phosphoribosyl isomer 92.5 0.069 1.5E-06 38.1 1.5 35 9-44 83-117 (241)
94 cd02812 PcrB_like PcrB_like pr 92.4 0.071 1.5E-06 38.0 1.4 35 8-43 182-216 (219)
95 COG0107 HisF Imidazoleglycerol 92.4 0.11 2.3E-06 37.7 2.3 35 9-44 82-116 (256)
96 PRK13587 1-(5-phosphoribosyl)- 92.4 0.071 1.5E-06 38.0 1.4 35 9-44 84-118 (234)
97 PF00218 IGPS: Indole-3-glycer 92.2 0.088 1.9E-06 38.3 1.7 30 10-40 218-247 (254)
98 TIGR00734 hisAF_rel hisA/hisF 92.0 0.13 2.8E-06 36.4 2.4 30 2-35 188-217 (221)
99 KOG1606|consensus 91.9 0.2 4.4E-06 36.0 3.2 28 8-36 216-243 (296)
100 PRK13586 1-(5-phosphoribosyl)- 91.7 0.1 2.2E-06 37.3 1.5 35 9-44 81-115 (232)
101 PRK14114 1-(5-phosphoribosyl)- 91.5 0.11 2.4E-06 37.3 1.6 34 9-43 81-114 (241)
102 PRK06843 inosine 5-monophospha 91.5 0.18 3.9E-06 39.0 2.8 32 2-37 260-291 (404)
103 TIGR01768 GGGP-family geranylg 91.5 0.19 4.2E-06 35.9 2.8 35 8-43 186-220 (223)
104 TIGR00007 phosphoribosylformim 91.5 0.1 2.2E-06 36.5 1.4 35 9-44 80-114 (230)
105 PLN02460 indole-3-glycerol-pho 91.4 0.24 5.2E-06 37.5 3.3 31 9-40 296-326 (338)
106 COG0134 TrpC Indole-3-glycerol 91.2 0.23 5E-06 36.2 3.0 30 10-40 216-245 (254)
107 PLN02535 glycolate oxidase 91.2 0.24 5.3E-06 37.8 3.2 37 2-42 282-318 (364)
108 PRK13586 1-(5-phosphoribosyl)- 91.1 0.26 5.6E-06 35.2 3.1 27 8-35 196-222 (232)
109 cd04723 HisA_HisF Phosphoribos 91.0 0.26 5.7E-06 35.0 3.1 28 9-37 197-224 (233)
110 PLN02826 dihydroorotate dehydr 90.7 0.082 1.8E-06 40.9 0.3 35 8-43 348-383 (409)
111 PRK13957 indole-3-glycerol-pho 90.0 0.38 8.1E-06 34.9 3.2 30 9-40 210-239 (247)
112 PRK08649 inosine 5-monophospha 89.6 0.27 6E-06 37.5 2.3 31 2-36 260-290 (368)
113 TIGR01919 hisA-trpF 1-(5-phosp 89.4 0.21 4.7E-06 35.8 1.6 31 2-35 197-229 (243)
114 PF00977 His_biosynth: Histidi 89.3 0.13 2.9E-06 36.4 0.4 35 9-44 81-115 (229)
115 PRK06739 pyruvate kinase; Vali 89.2 0.93 2E-05 34.5 4.9 51 25-81 230-280 (352)
116 PRK13587 1-(5-phosphoribosyl)- 89.1 0.33 7.2E-06 34.6 2.3 27 9-36 200-226 (234)
117 PRK04302 triosephosphate isome 88.7 0.56 1.2E-05 33.0 3.2 30 9-39 181-210 (223)
118 cd02808 GltS_FMN Glutamate syn 88.6 0.89 1.9E-05 34.9 4.5 27 9-36 293-319 (392)
119 PTZ00314 inosine-5'-monophosph 88.5 0.46 1E-05 37.6 3.0 31 2-36 348-378 (495)
120 PRK04169 geranylgeranylglycery 87.6 0.56 1.2E-05 33.7 2.7 30 9-39 192-221 (232)
121 cd04736 MDH_FMN Mandelate dehy 87.5 0.45 9.8E-06 36.3 2.3 54 9-64 297-350 (361)
122 cd02922 FCB2_FMN Flavocytochro 87.5 0.45 9.8E-06 36.0 2.3 32 8-40 278-309 (344)
123 PF00977 His_biosynth: Histidi 87.3 0.33 7.1E-06 34.4 1.3 30 2-35 195-224 (229)
124 PRK14114 1-(5-phosphoribosyl)- 87.2 0.42 9.1E-06 34.3 1.9 31 2-35 192-227 (241)
125 PRK13802 bifunctional indole-3 87.0 0.72 1.6E-05 38.1 3.3 30 10-40 220-249 (695)
126 PRK09427 bifunctional indole-3 86.4 0.75 1.6E-05 36.1 3.0 29 9-39 218-246 (454)
127 PRK14725 pyruvate kinase; Prov 86.2 1.4 3.1E-05 35.8 4.5 51 25-81 501-551 (608)
128 PRK14567 triosephosphate isome 85.9 0.85 1.8E-05 33.2 2.9 32 9-42 210-241 (253)
129 PF00478 IMPDH: IMP dehydrogen 85.9 0.6 1.3E-05 35.6 2.2 29 2-34 215-243 (352)
130 PRK11197 lldD L-lactate dehydr 85.6 0.53 1.2E-05 36.2 1.8 31 2-36 304-334 (381)
131 cd03332 LMO_FMN L-Lactate 2-mo 85.4 0.63 1.4E-05 35.8 2.1 26 9-35 316-341 (383)
132 PLN02461 Probable pyruvate kin 85.4 0.7 1.5E-05 36.9 2.4 27 11-37 243-270 (511)
133 PRK05567 inosine 5'-monophosph 85.3 0.81 1.8E-05 36.0 2.7 31 2-36 335-365 (486)
134 TIGR00734 hisAF_rel hisA/hisF 85.0 0.53 1.1E-05 33.3 1.4 36 9-44 85-121 (221)
135 PTZ00066 pyruvate kinase; Prov 84.9 3.4 7.4E-05 33.1 6.0 64 12-81 260-324 (513)
136 PLN02762 pyruvate kinase compl 84.9 0.77 1.7E-05 36.6 2.4 28 10-37 253-281 (509)
137 PLN02446 (5-phosphoribosyl)-5- 84.7 0.88 1.9E-05 33.3 2.5 46 2-57 211-257 (262)
138 PLN02979 glycolate oxidase 84.4 0.75 1.6E-05 35.2 2.1 31 2-36 282-312 (366)
139 TIGR01302 IMP_dehydrog inosine 84.1 0.98 2.1E-05 35.2 2.7 38 2-43 331-368 (450)
140 PRK07107 inosine 5-monophospha 83.8 0.88 1.9E-05 36.1 2.4 31 2-36 356-386 (502)
141 PLN02765 pyruvate kinase 83.8 0.9 1.9E-05 36.4 2.4 13 25-37 272-284 (526)
142 PLN02446 (5-phosphoribosyl)-5- 83.7 0.45 9.7E-06 34.9 0.6 34 8-43 90-127 (262)
143 COG1304 idi Isopentenyl diphos 83.4 0.51 1.1E-05 36.0 0.9 57 8-66 280-336 (360)
144 COG0214 SNZ1 Pyridoxine biosyn 82.8 1.7 3.6E-05 31.8 3.2 46 9-65 216-261 (296)
145 KOG2334|consensus 82.6 0.69 1.5E-05 36.2 1.3 72 2-81 389-460 (477)
146 PRK07807 inosine 5-monophospha 82.6 1.1 2.4E-05 35.4 2.4 33 2-38 334-366 (479)
147 PLN02274 inosine-5'-monophosph 82.1 1.3 2.8E-05 35.2 2.7 31 2-36 355-385 (505)
148 PLN02493 probable peroxisomal 81.8 1.1 2.5E-05 34.3 2.2 31 2-36 283-313 (367)
149 TIGR01303 IMP_DH_rel_1 IMP deh 81.8 1.3 2.9E-05 34.9 2.6 30 2-35 332-361 (475)
150 TIGR02129 hisA_euk phosphoribo 80.3 0.74 1.6E-05 33.5 0.7 29 9-39 84-112 (253)
151 TIGR01305 GMP_reduct_1 guanosi 79.9 1.6 3.4E-05 33.3 2.3 26 2-31 216-241 (343)
152 PF01884 PcrB: PcrB family; I 79.9 0.91 2E-05 32.6 1.1 31 9-40 190-220 (230)
153 cd00564 TMP_TenI Thiamine mono 79.2 2.8 6.1E-05 27.8 3.3 28 9-38 158-185 (196)
154 PF01645 Glu_synthase: Conserv 78.7 1.4 3.1E-05 33.7 1.9 29 8-37 281-309 (368)
155 PRK07226 fructose-bisphosphate 77.9 2.3 5E-05 30.7 2.7 31 9-39 204-239 (267)
156 TIGR00262 trpA tryptophan synt 77.9 2.4 5.1E-05 30.7 2.7 26 9-35 206-231 (256)
157 PTZ00300 pyruvate kinase; Prov 77.7 1.7 3.7E-05 34.2 2.0 14 23-36 209-222 (454)
158 TIGR01163 rpe ribulose-phospha 77.2 3 6.6E-05 28.4 3.0 29 9-39 173-201 (210)
159 cd04723 HisA_HisF Phosphoribos 77.1 1.9 4.2E-05 30.6 2.0 33 9-43 86-118 (233)
160 PF00224 PK: Pyruvate kinase, 77.0 1.1 2.4E-05 33.8 0.8 13 25-37 240-252 (348)
161 cd00311 TIM Triosephosphate is 75.9 2.5 5.5E-05 30.4 2.4 31 9-41 207-237 (242)
162 PRK09206 pyruvate kinase; Prov 75.9 2.4 5.1E-05 33.6 2.4 20 16-37 230-249 (470)
163 PRK05096 guanosine 5'-monophos 75.9 2 4.3E-05 32.7 1.9 32 1-36 216-247 (346)
164 PLN02623 pyruvate kinase 75.6 2.2 4.7E-05 34.6 2.2 21 14-36 333-353 (581)
165 PLN02561 triosephosphate isome 75.0 2.4 5.3E-05 30.8 2.1 31 11-43 213-243 (253)
166 CHL00162 thiG thiamin biosynth 74.6 3.8 8.3E-05 30.1 3.0 26 9-35 197-222 (267)
167 PLN02591 tryptophan synthase 74.4 2.7 5.9E-05 30.4 2.3 27 9-36 197-223 (250)
168 PF04131 NanE: Putative N-acet 74.3 2.6 5.7E-05 29.5 2.1 33 2-39 148-180 (192)
169 PLN02617 imidazole glycerol ph 74.1 5.7 0.00012 32.0 4.1 32 9-41 322-364 (538)
170 TIGR03128 RuMP_HxlA 3-hexulose 73.7 5.1 0.00011 27.4 3.4 27 9-37 166-192 (206)
171 KOG0134|consensus 73.7 2.8 6E-05 32.6 2.2 36 9-44 326-361 (400)
172 PRK05581 ribulose-phosphate 3- 73.5 3.6 7.9E-05 28.3 2.7 29 9-39 178-206 (220)
173 PRK07709 fructose-bisphosphate 73.1 4.3 9.3E-05 30.0 3.1 27 10-36 155-181 (285)
174 PRK13125 trpA tryptophan synth 72.9 3.8 8.3E-05 29.2 2.7 27 9-36 193-219 (244)
175 cd00958 DhnA Class I fructose- 72.9 5.2 0.00011 28.0 3.4 28 10-38 190-221 (235)
176 PF01070 FMN_dh: FMN-dependent 72.6 2.3 5E-05 32.3 1.6 26 9-35 288-313 (356)
177 PRK06247 pyruvate kinase; Prov 72.3 3.3 7.1E-05 32.8 2.4 13 25-37 234-246 (476)
178 PRK06354 pyruvate kinase; Prov 72.1 14 0.0003 30.2 5.9 51 25-81 243-293 (590)
179 TIGR00693 thiE thiamine-phosph 72.0 3.5 7.7E-05 27.9 2.3 27 9-37 160-186 (196)
180 TIGR02129 hisA_euk phosphoribo 71.9 3.7 7.9E-05 30.0 2.4 31 2-35 205-236 (253)
181 COG1411 Uncharacterized protei 71.8 3.8 8.3E-05 29.2 2.4 25 9-34 189-213 (229)
182 TIGR01949 AroFGH_arch predicte 71.6 4.5 9.7E-05 29.0 2.8 31 9-39 200-235 (258)
183 COG0469 PykF Pyruvate kinase [ 71.3 3.4 7.4E-05 32.8 2.3 11 26-36 241-251 (477)
184 PRK12737 gatY tagatose-bisphos 70.7 4.8 0.0001 29.7 2.9 28 10-37 154-181 (284)
185 PTZ00333 triosephosphate isome 70.5 4.6 9.9E-05 29.4 2.7 31 11-43 216-246 (255)
186 PRK08610 fructose-bisphosphate 69.7 5.5 0.00012 29.5 3.0 27 10-36 155-181 (286)
187 PLN02617 imidazole glycerol ph 69.6 4.5 9.6E-05 32.5 2.7 45 2-59 486-530 (538)
188 PRK09195 gatY tagatose-bisphos 67.7 5.9 0.00013 29.3 2.8 27 10-36 154-180 (284)
189 PRK00043 thiE thiamine-phospha 67.6 5.7 0.00012 27.1 2.6 26 9-36 168-193 (212)
190 PRK14565 triosephosphate isome 66.9 6 0.00013 28.5 2.6 30 11-41 198-227 (237)
191 cd00288 Pyruvate_Kinase Pyruva 66.9 4.9 0.00011 31.9 2.3 21 14-36 229-249 (480)
192 PF00121 TIM: Triosephosphate 66.7 3.1 6.7E-05 30.0 1.1 26 11-36 211-236 (244)
193 PRK12857 fructose-1,6-bisphosp 66.3 6.6 0.00014 29.0 2.8 26 10-35 154-179 (284)
194 PRK05826 pyruvate kinase; Prov 66.0 5.3 0.00011 31.6 2.4 20 15-36 230-249 (465)
195 COG1731 Archaeal riboflavin sy 65.9 6.2 0.00013 26.3 2.3 18 13-30 45-62 (154)
196 PF00290 Trp_syntA: Tryptophan 65.8 5.7 0.00012 29.0 2.4 48 10-64 207-254 (259)
197 PRK00042 tpiA triosephosphate 64.1 8.5 0.00018 27.9 3.0 30 11-41 212-241 (250)
198 PF07862 Nif11: Nitrogen fixat 62.6 5.9 0.00013 21.1 1.5 17 85-101 17-33 (49)
199 CHL00200 trpA tryptophan synth 62.6 8.2 0.00018 28.1 2.7 27 9-36 210-236 (263)
200 TIGR00419 tim triosephosphate 61.6 9.8 0.00021 26.8 2.9 25 11-35 178-202 (205)
201 cd04726 KGPDC_HPS 3-Keto-L-gul 61.3 13 0.00028 25.2 3.4 27 9-37 166-192 (202)
202 TIGR01521 FruBisAldo_II_B fruc 61.1 8.2 0.00018 29.4 2.6 31 10-40 170-200 (347)
203 KOG4201|consensus 60.8 9.4 0.0002 27.7 2.7 26 10-36 246-271 (289)
204 PRK11840 bifunctional sulfur c 60.5 11 0.00024 28.6 3.1 26 9-35 257-282 (326)
205 TIGR00167 cbbA ketose-bisphosp 60.4 9.9 0.00021 28.1 2.8 26 10-35 157-182 (288)
206 PF01116 F_bP_aldolase: Fructo 60.3 11 0.00023 27.9 3.0 27 10-36 154-180 (287)
207 cd00947 TBP_aldolase_IIB Tagat 60.1 10 0.00022 27.9 2.9 26 10-35 147-172 (276)
208 PRK07084 fructose-bisphosphate 59.7 11 0.00023 28.6 2.9 32 10-41 163-194 (321)
209 cd00429 RPE Ribulose-5-phospha 59.6 9.5 0.00021 25.8 2.5 29 9-39 174-202 (211)
210 COG0159 TrpA Tryptophan syntha 58.8 9.5 0.00021 28.1 2.5 25 10-36 214-238 (265)
211 TIGR01858 tag_bisphos_ald clas 58.7 11 0.00023 27.9 2.8 28 10-37 152-179 (282)
212 PF04476 DUF556: Protein of un 58.3 50 0.0011 23.9 6.0 50 11-65 131-180 (235)
213 PLN02334 ribulose-phosphate 3- 58.1 13 0.00028 26.1 3.0 28 9-38 182-209 (229)
214 PRK12738 kbaY tagatose-bisphos 57.9 12 0.00026 27.7 2.9 27 10-36 154-180 (286)
215 PRK14566 triosephosphate isome 57.3 11 0.00023 27.6 2.5 27 10-36 220-246 (260)
216 COG3010 NanE Putative N-acetyl 57.1 12 0.00026 26.8 2.6 27 2-32 184-210 (229)
217 PRK13399 fructose-1,6-bisphosp 56.6 9.4 0.0002 29.1 2.2 30 10-39 172-201 (347)
218 PRK07107 inosine 5-monophospha 56.6 13 0.00028 29.6 3.1 26 8-34 290-315 (502)
219 PRK05835 fructose-bisphosphate 56.4 14 0.0003 27.8 3.0 30 10-39 154-183 (307)
220 PRK15492 triosephosphate isome 56.2 12 0.00026 27.3 2.6 25 11-35 221-245 (260)
221 PRK13111 trpA tryptophan synth 55.7 12 0.00026 27.2 2.6 26 9-36 208-233 (258)
222 TIGR00227 ribD_Cterm riboflavi 55.6 21 0.00045 24.5 3.7 38 4-41 21-61 (216)
223 PF03060 NMO: Nitronate monoox 54.7 9.7 0.00021 28.4 2.0 31 2-36 194-224 (330)
224 PRK07998 gatY putative fructos 54.2 12 0.00026 27.7 2.4 25 10-34 152-176 (283)
225 TIGR01508 rib_reduct_arch 2,5- 53.9 21 0.00046 24.8 3.5 38 3-41 18-58 (210)
226 KOG0538|consensus 53.8 27 0.00058 26.7 4.1 53 9-67 286-342 (363)
227 TIGR03798 ocin_TIGR03798 bacte 53.7 20 0.00044 20.2 2.9 26 73-101 6-31 (64)
228 COG1646 Predicted phosphate-bi 53.0 13 0.00029 26.9 2.4 20 13-32 30-49 (240)
229 TIGR01305 GMP_reduct_1 guanosi 52.7 17 0.00036 27.8 3.0 25 8-33 156-180 (343)
230 PRK05848 nicotinate-nucleotide 52.0 19 0.00042 26.4 3.1 31 7-39 235-265 (273)
231 PF14871 GHL6: Hypothetical gl 51.1 65 0.0014 20.9 5.3 52 12-64 1-56 (132)
232 PHA02629 A-type inclusion body 51.0 16 0.00035 20.3 2.0 16 3-18 16-32 (61)
233 PLN02429 triosephosphate isome 51.0 18 0.00038 27.3 2.8 25 11-35 272-296 (315)
234 KOG2323|consensus 50.4 15 0.00032 29.4 2.5 12 25-36 258-269 (501)
235 KOG1371|consensus 49.3 16 0.00035 27.8 2.4 35 3-40 59-99 (343)
236 cd03319 L-Ala-DL-Glu_epimerase 48.8 18 0.00038 26.5 2.6 22 9-30 236-257 (316)
237 TIGR00168 infC translation ini 48.7 31 0.00067 23.5 3.6 40 2-43 14-53 (165)
238 PRK09196 fructose-1,6-bisphosp 48.6 16 0.00034 28.0 2.3 27 10-36 172-198 (347)
239 PF13653 GDPD_2: Glycerophosph 48.2 24 0.00052 17.2 2.2 17 12-29 9-25 (30)
240 COG1646 Predicted phosphate-bi 47.8 26 0.00057 25.4 3.2 32 9-41 199-230 (240)
241 PRK14905 triosephosphate isome 46.6 20 0.00044 27.3 2.7 33 11-44 222-254 (355)
242 COG0149 TpiA Triosephosphate i 45.6 22 0.00048 26.0 2.6 26 11-36 211-236 (251)
243 PF05690 ThiG: Thiazole biosyn 44.8 25 0.00053 25.7 2.7 25 9-34 183-207 (247)
244 PRK05458 guanosine 5'-monophos 44.1 23 0.00049 26.8 2.6 23 8-31 146-168 (326)
245 PLN02274 inosine-5'-monophosph 44.1 28 0.0006 27.8 3.1 23 8-31 295-317 (505)
246 cd02812 PcrB_like PcrB_like pr 43.5 27 0.0006 24.8 2.8 24 11-34 12-35 (219)
247 cd04724 Tryptophan_synthase_al 41.4 25 0.00053 25.1 2.3 25 9-35 195-219 (242)
248 PRK14719 bifunctional RNAse/5- 41.0 44 0.00095 25.5 3.7 38 3-41 157-197 (360)
249 PRK09197 fructose-bisphosphate 39.4 34 0.00073 26.2 2.8 27 10-36 187-217 (350)
250 PRK08185 hypothetical protein; 39.2 37 0.00081 25.1 3.0 30 10-39 148-177 (283)
251 PRK00507 deoxyribose-phosphate 39.2 29 0.00062 24.6 2.3 19 7-26 185-203 (221)
252 PRK07428 nicotinate-nucleotide 38.3 42 0.00092 24.9 3.2 31 8-40 250-280 (288)
253 cd00381 IMPDH IMPDH: The catal 38.2 42 0.00092 25.1 3.2 23 8-31 141-163 (325)
254 COG4034 Uncharacterized protei 38.1 22 0.00049 26.6 1.7 28 1-28 16-43 (328)
255 PF02662 FlpD: Methyl-viologen 37.9 43 0.00093 21.5 2.8 28 10-38 39-66 (124)
256 PF14488 DUF4434: Domain of un 37.9 95 0.002 20.9 4.6 48 18-66 27-79 (166)
257 PRK06843 inosine 5-monophospha 37.4 35 0.00075 26.6 2.7 25 8-33 200-224 (404)
258 PRK08883 ribulose-phosphate 3- 37.1 47 0.001 23.4 3.2 26 9-36 175-200 (220)
259 KOG1588|consensus 37.1 29 0.00062 25.5 2.1 27 15-41 119-145 (259)
260 TIGR02814 pfaD_fam PfaD family 36.8 33 0.00071 27.1 2.5 28 9-37 232-259 (444)
261 PRK05283 deoxyribose-phosphate 36.6 26 0.00057 25.6 1.8 26 7-40 201-226 (257)
262 PF12518 DUF3721: Protein of u 36.5 37 0.00079 17.2 1.8 17 12-28 3-19 (34)
263 COG1908 FrhD Coenzyme F420-red 36.2 48 0.001 21.8 2.8 27 11-38 41-67 (132)
264 COG1119 ModF ABC-type molybden 35.5 6.7 0.00014 28.7 -1.4 16 27-42 179-194 (257)
265 COG0107 HisF Imidazoleglycerol 34.8 20 0.00043 26.2 1.0 46 1-59 202-247 (256)
266 COG2022 ThiG Uncharacterized e 34.7 38 0.00082 24.8 2.3 23 10-33 191-213 (262)
267 cd04742 NPD_FabD 2-Nitropropan 34.7 37 0.0008 26.6 2.5 29 9-38 227-255 (418)
268 PF14216 DUF4326: Domain of un 34.7 1E+02 0.0022 18.6 4.0 38 23-63 11-49 (86)
269 COG1136 SalX ABC-type antimicr 33.6 17 0.00037 26.1 0.5 39 27-65 150-193 (226)
270 TIGR00433 bioB biotin syntheta 33.4 98 0.0021 22.2 4.4 39 10-51 120-158 (296)
271 PRK00230 orotidine 5'-phosphat 33.1 27 0.00059 24.6 1.5 22 16-38 193-214 (230)
272 cd00452 KDPG_aldolase KDPG and 33.0 34 0.00074 23.2 1.9 29 9-40 151-179 (190)
273 COG2192 Predicted carbamoyl tr 32.4 50 0.0011 26.9 2.9 23 10-32 526-548 (555)
274 PRK06512 thiamine-phosphate py 32.1 50 0.0011 23.3 2.6 26 9-36 172-197 (221)
275 PF08887 GAD-like: GAD-like do 32.1 37 0.00081 21.5 1.8 34 10-43 55-96 (109)
276 TIGR01306 GMP_reduct_2 guanosi 31.5 59 0.0013 24.6 3.0 24 8-32 143-166 (321)
277 KOG0185|consensus 31.5 28 0.00062 25.3 1.3 19 5-23 85-103 (256)
278 PRK14059 hypothetical protein; 31.4 71 0.0015 23.0 3.4 38 3-40 47-87 (251)
279 PF12909 DUF3832: Protein of u 31.3 52 0.0011 20.2 2.3 45 52-101 41-86 (89)
280 PRK14179 bifunctional 5,10-met 31.1 46 0.001 24.7 2.4 29 11-39 140-174 (284)
281 PRK09140 2-dehydro-3-deoxy-6-p 30.7 1.6E+02 0.0034 20.5 5.0 28 9-38 159-186 (206)
282 PRK06801 hypothetical protein; 30.6 59 0.0013 24.0 2.9 27 10-36 155-181 (286)
283 PRK02615 thiamine-phosphate py 30.5 48 0.001 25.3 2.4 27 9-37 302-328 (347)
284 PRK03620 5-dehydro-4-deoxygluc 30.4 1.2E+02 0.0027 22.2 4.6 20 18-42 95-114 (303)
285 PRK14194 bifunctional 5,10-met 29.8 48 0.001 24.8 2.3 29 11-39 141-175 (301)
286 COG0274 DeoC Deoxyribose-phosp 29.7 47 0.001 24.0 2.2 16 7-22 189-204 (228)
287 cd00405 PRAI Phosphoribosylant 29.5 63 0.0014 22.0 2.7 31 9-40 160-190 (203)
288 PRK06852 aldolase; Validated 29.5 54 0.0012 24.6 2.5 25 12-36 242-270 (304)
289 COG1087 GalE UDP-glucose 4-epi 29.4 59 0.0013 24.7 2.7 24 8-31 51-74 (329)
290 PRK13962 bifunctional phosphog 29.3 52 0.0011 27.3 2.6 26 10-35 607-632 (645)
291 PF09370 TIM-br_sig_trns: TIM- 29.1 34 0.00074 25.3 1.4 24 8-31 222-246 (268)
292 TIGR01520 FruBisAldo_II_A fruc 29.1 61 0.0013 24.9 2.8 27 10-36 194-224 (357)
293 KOG0361|consensus 29.0 24 0.00051 27.9 0.6 29 15-43 377-408 (543)
294 cd03315 MLE_like Muconate lact 29.0 67 0.0015 22.8 2.9 22 9-30 188-209 (265)
295 TIGR00326 eubact_ribD riboflav 27.8 81 0.0018 23.6 3.3 18 23-40 179-198 (344)
296 COG5481 Uncharacterized conser 27.7 20 0.00044 20.5 0.0 21 12-32 22-42 (67)
297 PRK09250 fructose-bisphosphate 27.2 51 0.0011 25.3 2.1 24 12-35 293-322 (348)
298 PF00478 IMPDH: IMP dehydrogen 26.6 44 0.00096 25.6 1.7 24 9-33 156-179 (352)
299 COG1088 RfbB dTDP-D-glucose 4, 26.6 76 0.0017 24.2 2.9 36 8-43 58-99 (340)
300 PRK08187 pyruvate kinase; Vali 26.5 2.3E+02 0.0049 22.8 5.7 42 10-64 436-479 (493)
301 PRK03170 dihydrodipicolinate s 26.5 1.6E+02 0.0036 21.2 4.6 39 15-63 87-125 (292)
302 PRK02227 hypothetical protein; 26.3 76 0.0017 23.0 2.8 49 12-65 132-180 (238)
303 PF05172 Nup35_RRM: Nup53/35/4 26.1 77 0.0017 19.7 2.4 21 11-31 62-85 (100)
304 PF01373 Glyco_hydro_14: Glyco 26.0 34 0.00073 26.7 1.0 22 9-30 14-35 (402)
305 TIGR01417 PTS_I_fam phosphoeno 26.0 2.6E+02 0.0056 22.7 6.0 52 9-66 273-325 (565)
306 TIGR01064 pyruv_kin pyruvate k 25.9 49 0.0011 26.2 1.9 12 25-36 236-247 (473)
307 PRK09250 fructose-bisphosphate 25.8 81 0.0018 24.2 2.9 29 9-37 89-117 (348)
308 PLN02803 beta-amylase 25.7 59 0.0013 26.5 2.2 22 9-30 102-126 (548)
309 PTZ00314 inosine-5'-monophosph 25.7 84 0.0018 25.0 3.1 23 8-31 288-310 (495)
310 cd00951 KDGDH 5-dehydro-4-deox 25.7 1.6E+02 0.0035 21.4 4.4 21 17-42 87-107 (289)
311 TIGR01769 GGGP geranylgeranylg 25.6 71 0.0015 22.5 2.5 15 17-31 17-31 (205)
312 PRK05625 5-amino-6-(5-phosphor 25.4 1E+02 0.0023 21.2 3.3 37 4-41 21-60 (217)
313 PF01729 QRPTase_C: Quinolinat 25.1 66 0.0014 21.8 2.2 23 9-32 86-108 (169)
314 PLN02858 fructose-bisphosphate 24.8 77 0.0017 28.6 3.0 27 10-36 1249-1275(1378)
315 COG0191 Fba Fructose/tagatose 24.7 2E+02 0.0043 21.5 4.7 32 10-41 155-186 (286)
316 PF05643 DUF799: Putative bact 24.5 1E+02 0.0022 22.0 3.1 23 10-32 86-113 (215)
317 PF01791 DeoC: DeoC/LacD famil 24.2 34 0.00074 24.0 0.6 24 11-35 209-234 (236)
318 COG0290 InfC Translation initi 23.8 95 0.002 21.5 2.7 38 3-42 26-63 (176)
319 PRK06256 biotin synthase; Vali 23.7 1.1E+02 0.0024 22.6 3.3 40 9-51 148-187 (336)
320 cd00516 PRTase_typeII Phosphor 23.6 1.2E+02 0.0025 21.8 3.4 32 7-40 245-276 (281)
321 PRK00028 infC translation init 23.6 1.3E+02 0.0029 20.6 3.4 39 2-42 26-64 (177)
322 PRK13307 bifunctional formalde 23.3 98 0.0021 24.0 3.0 26 9-36 338-363 (391)
323 cd00453 FTBP_aldolase_II Fruct 23.0 89 0.0019 23.9 2.7 27 10-36 180-210 (340)
324 PF01680 SOR_SNZ: SOR/SNZ fami 23.0 60 0.0013 22.9 1.6 35 9-44 20-66 (208)
325 PLN02389 biotin synthase 22.7 2.4E+02 0.0052 21.6 5.0 39 10-51 175-213 (379)
326 PRK10084 dTDP-glucose 4,6 dehy 22.6 98 0.0021 22.5 2.8 27 8-34 57-83 (352)
327 PRK05742 nicotinate-nucleotide 22.6 1.2E+02 0.0025 22.4 3.2 28 9-38 241-268 (277)
328 PF07793 DUF1631: Protein of u 22.6 1.6E+02 0.0034 24.3 4.3 52 31-84 386-445 (729)
329 cd00408 DHDPS-like Dihydrodipi 22.4 2.3E+02 0.0051 20.1 4.7 39 15-63 83-121 (281)
330 PRK07028 bifunctional hexulose 22.4 1.1E+02 0.0023 23.7 3.1 28 9-38 170-197 (430)
331 cd00954 NAL N-Acetylneuraminic 22.1 2.8E+02 0.0061 20.0 5.1 17 15-31 87-103 (288)
332 PRK11750 gltB glutamate syntha 22.1 70 0.0015 29.2 2.2 29 8-37 1074-1102(1485)
333 PRK05567 inosine 5'-monophosph 22.0 97 0.0021 24.4 2.8 23 8-31 275-297 (486)
334 PRK07455 keto-hydroxyglutarate 21.9 1.3E+02 0.0028 20.5 3.2 27 8-36 159-185 (187)
335 PF08025 Antimicrobial_3: Spid 21.8 44 0.00095 16.8 0.6 14 85-98 21-34 (37)
336 PF07587 PSD1: Protein of unkn 21.6 92 0.002 22.5 2.5 21 29-50 30-50 (266)
337 PRK08385 nicotinate-nucleotide 21.5 1.3E+02 0.0028 22.2 3.3 27 7-35 237-263 (278)
338 KOG2550|consensus 21.3 47 0.001 26.4 0.9 28 1-32 357-384 (503)
339 TIGR01859 fruc_bis_ald_ fructo 21.3 1.1E+02 0.0025 22.4 2.9 26 9-34 151-176 (282)
340 KOG1210|consensus 21.2 3.6E+02 0.0078 20.7 5.5 37 7-43 90-130 (331)
341 PF13460 NAD_binding_10: NADH( 21.2 1.3E+02 0.0028 19.5 3.0 24 8-33 46-69 (183)
342 KOG3066|consensus 21.2 66 0.0014 23.4 1.6 21 2-22 185-205 (271)
343 PRK04147 N-acetylneuraminate l 21.1 2.8E+02 0.0062 20.0 5.0 20 18-42 93-112 (293)
344 PRK08072 nicotinate-nucleotide 20.7 1.2E+02 0.0026 22.3 2.9 24 9-34 240-263 (277)
345 PHA03358 Alkaline exonuclease; 20.7 76 0.0016 18.8 1.5 22 2-25 17-38 (75)
346 KOG2870|consensus 20.7 94 0.002 24.0 2.4 66 10-81 266-343 (452)
347 cd08580 GDPD_Rv2277c_like Glyc 20.6 1E+02 0.0022 22.3 2.5 20 10-30 238-257 (263)
348 cd01573 modD_like ModD; Quinol 20.1 1.1E+02 0.0025 22.3 2.7 23 9-32 189-211 (272)
No 1
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.87 E-value=3.6e-22 Score=147.35 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=79.7
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCC---CCCHHH---HHHHHHHHHHHhcCCC---CcH
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKG---IQDIHQ---MIKEYLRYCVDYDNSA---PNS 71 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~---~~~~~~---~~~~~l~~~~~~~~~~---~~~ 71 (101)
+++|| ||+|++|++++++.||||+||||||+++|||||+++.. ..++.+ ++.+|+++..++.... ..+
T Consensus 197 Vi~nG---dI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (312)
T PRK10550 197 VIANG---EIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARI 273 (312)
T ss_pred EEEeC---CcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHH
Confidence 46788 99999999999999999999999999999999998632 234544 4677777655554322 226
Q ss_pred HHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403 72 KYCVQSMLGSQQE-SPLGKKFLESQTLEQI 100 (101)
Q Consensus 72 k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~ 100 (101)
|.++.+|++++++ +++|+++.+++|++|+
T Consensus 274 rk~~~~y~~~~~~~~~~r~~i~~~~~~~e~ 303 (312)
T PRK10550 274 KQWLGYLRKEYDEATELFQEIRALNNSPDI 303 (312)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHcCCCHHHH
Confidence 8999999999999 9999999999999986
No 2
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.86 E-value=5.6e-22 Score=146.69 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=82.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC-----C----CCCHH---HHHHHHHHHHHHhcCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK-----G----IQDIH---QMIKEYLRYCVDYDNSA 68 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~-----~----~~~~~---~~~~~~l~~~~~~~~~~ 68 (101)
+++|| ||.|++|++++++.|||||||||||+++|||||+++. + +.++. +++.+|++.+.+|.++.
T Consensus 197 VI~nG---gI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (321)
T PRK10415 197 VIANG---DITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPA 273 (321)
T ss_pred EEEeC---CCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChH
Confidence 46788 9999999999999999999999999999999998861 2 23343 56788888888876543
Q ss_pred ---CcHHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403 69 ---PNSKYCVQSMLGSQQE-SPLGKKFLESQTLEQI 100 (101)
Q Consensus 69 ---~~~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~ 100 (101)
...|+++.+|++++++ +++|+.+.+++|++|+
T Consensus 274 ~~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~~~~~ 309 (321)
T PRK10415 274 KGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309 (321)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHcCCCHHHH
Confidence 3478999999999999 9999999999999986
No 3
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.7e-21 Score=143.27 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=82.0
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC----CCC---CCHH---HHHHHHHHHHHHhcC--CC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT----KGI---QDIH---QMIKEYLRYCVDYDN--SA 68 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~----~~~---~~~~---~~~~~~l~~~~~~~~--~~ 68 (101)
+++|| ||+|++|++++++.||||||||||||++|||||.++ .+. .++. +++.+|++...++.+ ..
T Consensus 201 vi~NG---dI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 277 (323)
T COG0042 201 VIANG---DIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGL 277 (323)
T ss_pred EEeCC---CcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHH
Confidence 47888 999999999999999999999999999999999963 222 3443 678889988888774 23
Q ss_pred CcHHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403 69 PNSKYCVQSMLGSQQE-SPLGKKFLESQTLEQI 100 (101)
Q Consensus 69 ~~~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~ 100 (101)
...+.|+.+|+++.++ +++|+.+.++.+.+++
T Consensus 278 ~~~r~h~~~~~~~~~~a~~~r~~~~~~~~~~~~ 310 (323)
T COG0042 278 RRLRKHLGYYLKGLPGARELRRALNKAEDGAEV 310 (323)
T ss_pred HHHHHHHHHHhhcCccHHHHHHHHhccCcHHHH
Confidence 4478899999999999 9999999999998875
No 4
>KOG2335|consensus
Probab=99.80 E-value=7.5e-20 Score=135.78 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=78.0
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCC--CCcHHHHHHhh
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNS--APNSKYCVQSM 78 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~k~~l~~~ 78 (101)
++||| +|.+++|+.+|+++||+||||+|||+|.|||+|.......+..+++.+|++++.++.+. ++..+.|+.+|
T Consensus 206 viaNG---nI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g~~~~~~~~~Hl~~m 282 (358)
T KOG2335|consen 206 VIANG---NILSLEDVERCLKYTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGGLSSFSLIRHHLFKM 282 (358)
T ss_pred EEeeC---CcCcHHHHHHHHHHhCCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Confidence 57899 99999999999999999999999999999999944122344569999999999999855 78899999999
Q ss_pred hCCCCC--hHHHHHHHhcCChh
Q psy4403 79 LGSQQE--SPLGKKFLESQTLE 98 (101)
Q Consensus 79 ~~~~~~--~~~~~~i~~~~~~~ 98 (101)
++.... ..+|..+...++.+
T Consensus 283 ~~~~~~~~~~~r~~~~~~~~~~ 304 (358)
T KOG2335|consen 283 LRPLLSIHQDLRRDLAALNSCE 304 (358)
T ss_pred HHHHHhhhHHHHHHHhhccchh
Confidence 876443 44777777666444
No 5
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.80 E-value=5.7e-21 Score=140.65 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=71.1
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccC---CC----CC-CCCH---HHHHHHHHHHHHHhcCCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFS---PT----KG-IQDI---HQMIKEYLRYCVDYDNSAP 69 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~---~~----~~-~~~~---~~~~~~~l~~~~~~~~~~~ 69 (101)
+++|| ||+|++|++++++.||||||||||||+.|||||+ ++ .. ..+. .+++.+|++...++.+...
T Consensus 186 vi~NG---dI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (309)
T PF01207_consen 186 VIANG---DIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEK 262 (309)
T ss_dssp EEEES---S--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCH
T ss_pred eEEcC---ccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCc
Confidence 46888 9999999999999999999999999999999999 32 11 1222 2667888887777654333
Q ss_pred c---HHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403 70 N---SKYCVQSMLGSQQE-SPLGKKFLESQTLEQI 100 (101)
Q Consensus 70 ~---~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~ 100 (101)
. .+.++.+|+.++++ +++|+.+.++++.+|+
T Consensus 263 ~~~~~~k~~~~y~~~~~~~~~~r~~l~~~~~~~e~ 297 (309)
T PF01207_consen 263 ALRQMRKHLKWYFKGFPGARKFRRELNKCKTLEEF 297 (309)
T ss_dssp HHHHHHTTCCCCTTTSTTHHHHHHHHCCH-SHHHH
T ss_pred hHHHHHHHHHHHHccCCcHHHHHHHHHhhCCHHHH
Confidence 2 45566777888888 9999999999998875
No 6
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.78 E-value=3.1e-19 Score=132.10 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=71.1
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC-----C---CCCHHHHHHHHHHHHHHhcCC---CC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK-----G---IQDIHQMIKEYLRYCVDYDNS---AP 69 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~-----~---~~~~~~~~~~~l~~~~~~~~~---~~ 69 (101)
+++|| ||+|++|+.++++ ||||||||||++.|||||.++. + ..+..+.+..+++++.++.+. ..
T Consensus 198 Vi~NG---dI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (318)
T TIGR00742 198 IEING---GIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQGLSLN 272 (318)
T ss_pred EEEEC---CcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 36788 9999999999995 8999999999999999998851 1 134556655555555444322 34
Q ss_pred cHHHHHHhhhCCCCC-hHHHHHHHhcCCh
Q psy4403 70 NSKYCVQSMLGSQQE-SPLGKKFLESQTL 97 (101)
Q Consensus 70 ~~k~~l~~~~~~~~~-~~~~~~i~~~~~~ 97 (101)
..|+++.+|++++++ +++|.++.++.+.
T Consensus 273 ~~rk~~~~y~~g~~~~~~~r~~~~~~~~~ 301 (318)
T TIGR00742 273 HITRHLLGLFQGKPGAKQWRRYLSENAPK 301 (318)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHhcccC
Confidence 578999999999999 9999999886554
No 7
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.76 E-value=1.8e-18 Score=127.62 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=80.4
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC-----C----CCCHH---HHHHHHHHHHHHhcCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK-----G----IQDIH---QMIKEYLRYCVDYDNSA 68 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~-----~----~~~~~---~~~~~~l~~~~~~~~~~ 68 (101)
+++|| +|.|++|+.++++.+|||+||||||++.|||+|.++. + +.++. +++.+|++++.++.++.
T Consensus 195 vi~nG---gI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (319)
T TIGR00737 195 VIGNG---DIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGES 271 (319)
T ss_pred EEEeC---CCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcc
Confidence 36788 9999999999999999999999999999999998751 2 12333 56888888887765442
Q ss_pred ---CcHHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403 69 ---PNSKYCVQSMLGSQQE-SPLGKKFLESQTLEQI 100 (101)
Q Consensus 69 ---~~~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~ 100 (101)
...|+++.+|++++++ +++|+.+.+++|++|+
T Consensus 272 ~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 307 (319)
T TIGR00737 272 KGLRIARKHIAWYLKGFPGNAALRQTLNHASSFQEV 307 (319)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCCHHHH
Confidence 3367888999999998 9999999999999986
No 8
>KOG2334|consensus
Probab=99.69 E-value=1.8e-17 Score=125.17 Aligned_cols=99 Identities=45% Similarity=0.691 Sum_probs=89.6
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHhhhC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLG 80 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~l~~~~~ 80 (101)
+++||++-|+.-+.|++...+.|++++|||+|.|+.||++|+. +|.+|+.+.+++|++++.+|++.+.++||++.+++.
T Consensus 212 vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~-eG~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~ 290 (477)
T KOG2334|consen 212 VIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFRE-EGCLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILR 290 (477)
T ss_pred EeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeee-cCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4689976666669999999999999999999999999999999 888889999999999999999999999999999998
Q ss_pred CCCC-hHHHHHHHhcCChhhh
Q psy4403 81 SQQE-SPLGKKFLESQTLEQI 100 (101)
Q Consensus 81 ~~~~-~~~~~~i~~~~~~~e~ 100 (101)
+... -+.++.++.+.+.+++
T Consensus 291 ~~~~~~p~~~~~~~~~~~~~i 311 (477)
T KOG2334|consen 291 GIQEGCPRGKRIQAAQTVAQI 311 (477)
T ss_pred hhhccCchhhHhhcchhHHHH
Confidence 8766 4788888888887765
No 9
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.68 E-value=4.5e-17 Score=121.11 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=72.7
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC----C----CCCHHHHHHHHHHHHHHhcC---CCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK----G----IQDIHQMIKEYLRYCVDYDN---SAP 69 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~----~----~~~~~~~~~~~l~~~~~~~~---~~~ 69 (101)
+++|| ||+|++|++++++ +|||||||||++.|||+|.++. + ..++.+++..+++++.++.. ...
T Consensus 208 VI~nG---gI~s~eda~~~l~--~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
T PRK11815 208 IEING---GIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQGGRLN 282 (333)
T ss_pred EEEEC---CcCCHHHHHHHHh--cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHcCchHH
Confidence 46788 9999999999997 5999999999999999999851 2 13466776666666555432 234
Q ss_pred cHHHHHHhhhCCCCC-hHHHHHHHhcCCh
Q psy4403 70 NSKYCVQSMLGSQQE-SPLGKKFLESQTL 97 (101)
Q Consensus 70 ~~k~~l~~~~~~~~~-~~~~~~i~~~~~~ 97 (101)
..|+++.+|++++++ +++|.++.++.+.
T Consensus 283 ~~rk~~~~y~~~~~~~~~~r~~~~~~~~~ 311 (333)
T PRK11815 283 HITRHMLGLFQGLPGARAWRRYLSENAHK 311 (333)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhhccc
Confidence 578899999999999 9999999887654
No 10
>KOG2333|consensus
Probab=99.50 E-value=1.6e-14 Score=111.00 Aligned_cols=65 Identities=25% Similarity=0.297 Sum_probs=54.6
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcC-CCeeeeecccccCCCccCCCCCCCCH-------HHHHHHHHHHHHHhcCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTN-ASSVMIARAAQDNCSIFSPTKGIQDI-------HQMIKEYLRYCVDYDNSA 68 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg-~dgvMigRgAl~nP~iF~~~~~~~~~-------~~~~~~~l~~~~~~~~~~ 68 (101)
+++|| ||.|++|+.+-+..++ +++||||||||-.||||.+|.....| -++++.|.++..+|.+..
T Consensus 457 liGNG---Di~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSD 529 (614)
T KOG2333|consen 457 LIGNG---DILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSD 529 (614)
T ss_pred eEecC---ccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCc
Confidence 36777 9999999999999988 99999999999999999998432211 289999999999988653
No 11
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.17 E-value=8.8e-12 Score=88.88 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=34.9
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| ||+|++|+.++++ +|||+|||||| +|||+|+++
T Consensus 194 VIgnG---gI~s~eda~~~l~-~GaD~VmiGR~--~~p~~~~~~ 231 (233)
T cd02911 194 IIGNN---SVTTIESAKEMFS-YGADMVSVARA--SLPENIEWL 231 (233)
T ss_pred EEEEC---CcCCHHHHHHHHH-cCCCEEEEcCC--CCchHHHHh
Confidence 46788 9999999999997 89999999999 999999874
No 12
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.99 E-value=1.8e-10 Score=80.81 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=37.9
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +|.|++|+.++++.+|||+||+||+++.|||+|.++
T Consensus 186 vi~~G---gi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~ 226 (231)
T cd02801 186 VIANG---DIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREI 226 (231)
T ss_pred EEEeC---CCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhh
Confidence 35777 999999999999999999999999999999999874
No 13
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.87 E-value=9.9e-10 Score=78.43 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=30.4
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
+++|| ||+|++|+.++++ ||||+||||||++.|
T Consensus 194 IIgNG---gI~s~eda~e~l~-~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 194 IIGNN---SIDDIESAKEMLK-AGADFVSVARAILKG 226 (231)
T ss_pred EEEEC---CcCCHHHHHHHHH-hCCCeEEEcHhhccC
Confidence 46788 9999999999998 999999999999976
No 14
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.79 E-value=3.4e-09 Score=77.52 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=36.0
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+++|| +|.|++|+.++++ +|||+|||||+++.|||+|.+
T Consensus 237 vi~~G---GI~s~~da~~~l~-~GAd~V~igr~~l~~p~~~~~ 275 (300)
T TIGR01037 237 IIGVG---GITSFEDALEFLM-AGASAVQVGTAVYYRGFAFKK 275 (300)
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCceeecHHHhcCchHHHH
Confidence 46777 8999999999997 899999999999999999986
No 15
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.71 E-value=4.3e-09 Score=78.73 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=38.0
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
|++|| +|.+++++++++++++||.||+||+++.|||++.++
T Consensus 288 vi~~G---~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~ 328 (343)
T cd04734 288 VFHAG---RIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKA 328 (343)
T ss_pred EEeeC---CCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHH
Confidence 35677 999999999999999999999999999999999875
No 16
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.58 E-value=1.5e-08 Score=74.33 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=36.1
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~~ 44 (101)
+++|| +|.|.+|+.+++. +|||+|||++|++. +||+|+++
T Consensus 246 Iig~G---GI~s~~da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i 286 (294)
T cd04741 246 IIGVG---GVLDGRGAFRMRL-AGASAVQVGTALGKEGPKVFARI 286 (294)
T ss_pred EEEeC---CCCCHHHHHHHHH-cCCCceeEchhhhhcCchHHHHH
Confidence 35777 8999999999997 99999999999995 99999873
No 17
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.48 E-value=9.5e-08 Score=69.70 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=35.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+++|| +|.|++|+.++++ .|||+||+||+++.+||+|++
T Consensus 234 ii~~G---GI~~~~da~~~l~-~GAd~V~igra~l~~p~~~~~ 272 (296)
T cd04740 234 IIGVG---GIASGEDALEFLM-AGASAVQVGTANFVDPEAFKE 272 (296)
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEEEEchhhhcChHHHHH
Confidence 35677 8999999999996 899999999999999999986
No 18
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.38 E-value=7.1e-08 Score=70.03 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=36.2
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~~ 44 (101)
++++| +|.|++|+.++++ .|||+||+||+++.| ||+|.++
T Consensus 246 iia~G---GI~~~~da~~~l~-~GAd~V~vg~a~~~~GP~~~~~i 286 (289)
T cd02810 246 IIGVG---GIDSGEDVLEMLM-AGASAVQVATALMWDGPDVIRKI 286 (289)
T ss_pred EEEEC---CCCCHHHHHHHHH-cCccHheEcHHHHhcCccHHHHH
Confidence 35677 8999999999997 899999999999999 9999864
No 19
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.34 E-value=2.6e-07 Score=67.66 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=35.6
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+++|| +|.|++|+.++++ .|||.|||||+++.+|++|.+
T Consensus 237 vi~~G---GI~~~~da~~~l~-aGAd~V~igr~ll~~P~~~~~ 275 (301)
T PRK07259 237 IIGMG---GISSAEDAIEFIM-AGASAVQVGTANFYDPYAFPK 275 (301)
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCceeEcHHHhcCcHHHHH
Confidence 35677 8999999999996 899999999999999999986
No 20
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.34 E-value=1.5e-07 Score=71.32 Aligned_cols=40 Identities=10% Similarity=0.021 Sum_probs=37.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
++|| +|.+++++++++++++||.||+||+++.||++++++
T Consensus 309 i~~G---~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~ 348 (382)
T cd02931 309 IMAG---RMEDPELASEAINEGIADMISLGRPLLADPDVVNKI 348 (382)
T ss_pred EEeC---CCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHH
Confidence 5677 999999999999999999999999999999999886
No 21
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.32 E-value=1.6e-07 Score=70.91 Aligned_cols=41 Identities=7% Similarity=-0.021 Sum_probs=37.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
++++| +|.++++++++++.++||.||+||++|+|||++.++
T Consensus 292 vi~~G---~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~ 332 (370)
T cd02929 292 VVGVG---RFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKI 332 (370)
T ss_pred EEEeC---CCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHH
Confidence 35667 999999999999999999999999999999999886
No 22
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.31 E-value=1.2e-07 Score=70.96 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=37.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
|++|| +|.|++++++++++++||.||+||++++||+++.++
T Consensus 278 Vi~~G---~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~ 318 (337)
T PRK13523 278 TGAVG---LITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIA 318 (337)
T ss_pred EEEeC---CCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHH
Confidence 35677 999999999999999999999999999999998774
No 23
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.30 E-value=1.3e-07 Score=70.82 Aligned_cols=40 Identities=20% Similarity=0.105 Sum_probs=37.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
++|| ++.+++++++++++++||.||+||+++.|||+|+++
T Consensus 280 i~~G---~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~ 319 (353)
T cd02930 280 IASN---RINTPEVAERLLADGDADMVSMARPFLADPDFVAKA 319 (353)
T ss_pred EEcC---CCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHH
Confidence 4667 999999999999999999999999999999999875
No 24
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.26 E-value=3.1e-07 Score=68.45 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=36.7
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
|+++| +|.+++++++++++..||.||+||++++||+++.+
T Consensus 295 Vi~~G---~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k 334 (338)
T cd04733 295 LMVTG---GFRTRAAMEQALASGAVDGIGLARPLALEPDLPNK 334 (338)
T ss_pred EEEeC---CCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHH
Confidence 35677 89999999999999999999999999999999875
No 25
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.26 E-value=2.8e-07 Score=67.71 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=35.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~~ 44 (101)
+++|| +|.|.+|+.+++. +|||+|||+||++. .|.+|.++
T Consensus 255 Iig~G---GI~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~~~i 295 (299)
T cd02940 255 ISGIG---GIESWEDAAEFLL-LGASVVQVCTAVMNQGFTIVDDM 295 (299)
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCChheEceeecccCCcHHHHH
Confidence 35777 8999999999996 99999999999999 99998764
No 26
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.19 E-value=5.6e-07 Score=73.38 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=36.4
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC-CccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC-SIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP-~iF~~ 43 (101)
|++|| +|++++++++++++++||.||+||++|+|| |+|..
T Consensus 690 v~~~G---~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~ 730 (765)
T PRK08255 690 TIAVG---AISEADHVNSIIAAGRADLCALARPHLADPAWTLHE 730 (765)
T ss_pred EEEeC---CCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHH
Confidence 35677 999999999999999999999999999999 77765
No 27
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.17 E-value=5.6e-07 Score=66.30 Aligned_cols=39 Identities=21% Similarity=0.103 Sum_probs=36.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
++|| +|.|+++++++++..+||.||+||+++.||+++.+
T Consensus 285 i~~G---gi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k 323 (327)
T cd02803 285 IAVG---GIRDPEVAEEILAEGKADLVALGRALLADPDLPNK 323 (327)
T ss_pred EEeC---CCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHH
Confidence 5667 89999999999999999999999999999999865
No 28
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.16 E-value=3e-07 Score=68.39 Aligned_cols=39 Identities=13% Similarity=-0.052 Sum_probs=34.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~~ 44 (101)
+++| +|.|.+|+.+++. +|||.|||||+++.+ ||+|.++
T Consensus 284 i~~G---GI~t~~da~e~l~-aGAd~V~vg~~~~~~gP~~~~~i 323 (327)
T cd04738 284 IGVG---GISSGEDAYEKIR-AGASLVQLYTGLVYEGPGLVKRI 323 (327)
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCHHhccHHHHhhCcHHHHHH
Confidence 4666 8999999999997 999999999999875 9999864
No 29
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.15 E-value=3.6e-07 Score=68.59 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=36.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +|+|+++++++++. |||.||+||+++.||+++.++
T Consensus 287 Vi~~G---gi~t~e~ae~~l~~-gaD~V~~gR~liadPdl~~k~ 326 (353)
T cd04735 287 LIAVG---SINTPDDALEALET-GADLVAIGRGLLVDPDWVEKI 326 (353)
T ss_pred EEEEC---CCCCHHHHHHHHHc-CCChHHHhHHHHhCccHHHHH
Confidence 35777 89999999999998 999999999999999999875
No 30
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.14 E-value=5.6e-07 Score=67.39 Aligned_cols=38 Identities=16% Similarity=-0.043 Sum_probs=34.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~ 43 (101)
+++| +|.|.+|+.++++ .|||.|||||+++. +||+|.+
T Consensus 293 ig~G---GI~s~eda~e~l~-aGAd~V~v~~~~~~~gP~~~~~ 331 (344)
T PRK05286 293 IGVG---GIDSAEDAYEKIR-AGASLVQIYSGLIYEGPGLVKE 331 (344)
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCHHHHHHHHHHhCchHHHH
Confidence 5666 8999999999997 99999999999987 5999987
No 31
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.07 E-value=1.4e-06 Score=65.20 Aligned_cols=40 Identities=18% Similarity=0.052 Sum_probs=36.4
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
++++| +|. ++++++++++.+||.||+||++++||+++.++
T Consensus 288 vi~~G---~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~ 327 (338)
T cd02933 288 LIAAG---GYD-AESAEAALADGKADLVAFGRPFIANPDLVERL 327 (338)
T ss_pred EEEEC---CCC-HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHH
Confidence 35677 897 99999999999999999999999999999875
No 32
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.07 E-value=2.1e-06 Score=61.35 Aligned_cols=35 Identities=9% Similarity=0.190 Sum_probs=30.4
Q ss_pred CccCCCCCCCCCHHHHHHHHH--hcCCCeeeeecccccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKA--DTNASSVMIARAAQDNC 38 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~--~tg~dgvMigRgAl~nP 38 (101)
+++|| +|+|++|+.++.+ .+|||||||||+++.++
T Consensus 193 viasG---Gi~s~~D~~~l~~~~~~GvdgV~igra~~~g~ 229 (241)
T PRK14024 193 VVASG---GVSSLDDLRALAELVPLGVEGAIVGKALYAGA 229 (241)
T ss_pred EEEeC---CCCCHHHHHHHhhhccCCccEEEEeHHHHcCC
Confidence 35777 9999999999974 58999999999998775
No 33
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.05 E-value=1.4e-06 Score=66.65 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=35.3
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~~ 44 (101)
+++|| +|.|.+|+.+++. +|||+|||+||++. .|.++.++
T Consensus 256 Iig~G---GI~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~ii~~I 296 (420)
T PRK08318 256 ISGIG---GIETWRDAAEFIL-LGAGTVQVCTAAMQYGFRIVEDM 296 (420)
T ss_pred EEeec---CcCCHHHHHHHHH-hCCChheeeeeeccCCchhHHHH
Confidence 35677 9999999999997 99999999999999 78887764
No 34
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.96 E-value=3.3e-06 Score=62.90 Aligned_cols=39 Identities=18% Similarity=-0.031 Sum_probs=35.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+++| +|.|+++++++++...||.||+||+++.||++..+
T Consensus 294 i~~G---~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k 332 (336)
T cd02932 294 IAVG---LITDPEQAEAILESGRADLVALGRELLRNPYWPLH 332 (336)
T ss_pred EEeC---CCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence 4666 89999999999999999999999999999998654
No 35
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.95 E-value=2e-06 Score=65.00 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+.|+++++++++..+||.||+||++|.|||++.++
T Consensus 307 ~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~ 341 (361)
T cd04747 307 PASLDRLLERLERGEFDLVAVGRALLSDPAWVAKV 341 (361)
T ss_pred cCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHH
Confidence 37999999999999999999999999999999875
No 36
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.89 E-value=8.8e-06 Score=57.26 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=29.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
+++|| +|.|++|++++++.+||+|||+||+++..
T Consensus 193 via~G---Gi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 193 VIASG---GVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred EEEeC---CCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 35777 89999999999998889999999998754
No 37
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.81 E-value=7.8e-06 Score=58.57 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=35.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.++| .|.|.+|++++++ +||++|+||++++.||++|.++
T Consensus 78 ~~~G---Gi~s~~~~~~~l~-~Ga~~Viigt~~l~~p~~~~ei 116 (253)
T PRK02083 78 TVGG---GIRSVEDARRLLR-AGADKVSINSAAVANPELISEA 116 (253)
T ss_pred EeeC---CCCCHHHHHHHHH-cCCCEEEEChhHhhCcHHHHHH
Confidence 4566 8999999999998 8999999999999999999775
No 38
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.80 E-value=1.4e-05 Score=59.52 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=33.4
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~ 43 (101)
+++|| +|+|.+|+.+++. +||++|||+|+++.+ |.++.+
T Consensus 242 Iig~G---GI~s~~Da~e~l~-aGA~~V~v~t~~~~~g~~~~~~ 281 (334)
T PRK07565 242 LAATT---GVHDAEDVIKMLL-AGADVVMIASALLRHGPDYIGT 281 (334)
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCceeeehHHhhhCcHHHHH
Confidence 35677 8999999999996 999999999999985 766554
No 39
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.79 E-value=1.8e-05 Score=55.66 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=30.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
++|| +|.+.+|+.++++ +||+|||+||+++.+|-
T Consensus 194 i~~G---Gi~~~~di~~~~~-~Ga~gv~vg~~~~~~~~ 227 (234)
T cd04732 194 IASG---GVSSLDDIKALKE-LGVAGVIVGKALYEGKI 227 (234)
T ss_pred EEec---CCCCHHHHHHHHH-CCCCEEEEeHHHHcCCC
Confidence 5677 8999999999997 69999999999999873
No 40
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.74 E-value=1.1e-05 Score=60.16 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=34.3
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~ 43 (101)
+++|| +|.|.+|+.+++. +||++|||+++++.+ |.++.+
T Consensus 240 Iig~G---GI~s~~Da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~ 279 (325)
T cd04739 240 LAASG---GVHDAEDVVKYLL-AGADVVMTTSALLRHGPDYIGT 279 (325)
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCeeEEehhhhhcCchHHHH
Confidence 35677 8999999999996 999999999999985 887765
No 41
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.73 E-value=2.3e-05 Score=55.19 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=28.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
+++| +|.|.+|++++++ +||||||||++++.+
T Consensus 193 ia~G---Gi~~~~di~~~~~-~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 193 IASG---GVSSIDDLIALKK-LGVYGVIVGKALYEG 224 (230)
T ss_pred EEeC---CCCCHHHHHHHHH-CCCCEEEEeHHHHcC
Confidence 5677 8999999999885 999999999999876
No 42
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.65 E-value=1.8e-05 Score=56.23 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=35.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++| .|.|.+|++++++ +||++|++||+++.||++|.++
T Consensus 75 ~~~G---GI~s~~d~~~~l~-~G~~~v~ig~~~~~~p~~~~~i 113 (243)
T cd04731 75 TVGG---GIRSLEDARRLLR-AGADKVSINSAAVENPELIREI 113 (243)
T ss_pred EEeC---CCCCHHHHHHHHH-cCCceEEECchhhhChHHHHHH
Confidence 4567 8999999999996 7999999999999999998765
No 43
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.58 E-value=5e-05 Score=53.95 Aligned_cols=31 Identities=13% Similarity=0.028 Sum_probs=28.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
++|| +|+|++|+.++++.+|||+||+||+..
T Consensus 197 ia~G---Gi~~~~di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 197 IASG---GAGKPEHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred EEeC---CCCCHHHHHHHHHhCCCCEEEEeHHHH
Confidence 5677 899999999999999999999999864
No 44
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.50 E-value=4.8e-05 Score=55.92 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=29.7
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+++|| +|++..|+.+++. +|||+||||| ||+|..
T Consensus 230 via~G---GI~~~~d~~kal~-lGAd~V~ig~-----~~l~~~ 263 (299)
T cd02809 230 VLLDG---GIRRGTDVLKALA-LGADAVLIGR-----PFLYGL 263 (299)
T ss_pred EEEeC---CCCCHHHHHHHHH-cCCCEEEEcH-----HHHHHH
Confidence 36777 8999999999996 9999999999 777764
No 45
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.48 E-value=6e-05 Score=53.37 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=32.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+++| +|+|++|+.++ ..+||+|||+|++++.+|.-+.+
T Consensus 197 ia~G---GI~~~~di~~~-~~~Ga~gv~vgsa~~~~~~~~~~ 234 (241)
T PRK13585 197 IASG---GVTTLDDLRAL-KEAGAAGVVVGSALYKGKFTLEE 234 (241)
T ss_pred EEeC---CCCCHHHHHHH-HHcCCCEEEEEHHHhcCCcCHHH
Confidence 5677 89999999995 67999999999999999876543
No 46
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.27 E-value=0.0001 Score=51.84 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.|.|++|++++++ +|||.||||+.++.||+++.++
T Consensus 81 gI~~~e~~~~~~~-~Gad~vvigs~~l~dp~~~~~i 115 (234)
T cd04732 81 GIRSLEDIERLLD-LGVSRVIIGTAAVKNPELVKEL 115 (234)
T ss_pred CcCCHHHHHHHHH-cCCCEEEECchHHhChHHHHHH
Confidence 7999999999995 8999999999999999988764
No 47
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.24 E-value=0.00025 Score=51.17 Aligned_cols=33 Identities=9% Similarity=-0.041 Sum_probs=28.3
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+++|| +|.|.+|+.++++++||+||++|++...
T Consensus 199 vIasG---Gv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 199 LIALG---GAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred EEEeC---CCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 35777 8999999999999999999998886543
No 48
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.24 E-value=0.00012 Score=52.70 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.|+|.+|++++++ .||++|++|+.++.||+++.++
T Consensus 82 Gi~s~~d~~~~~~-~Ga~~vivgt~~~~~p~~~~~~ 116 (254)
T TIGR00735 82 GIKSIEDVDKLLR-AGADKVSINTAAVKNPELIYEL 116 (254)
T ss_pred CCCCHHHHHHHHH-cCCCEEEEChhHhhChHHHHHH
Confidence 7999999999997 7999999999999999988764
No 49
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.17 E-value=0.00026 Score=50.71 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=28.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
++++| +|.|.+|+.++++.+||+|||+|+...
T Consensus 200 via~G---Gv~s~~d~~~~~~~~G~~gvivg~al~ 231 (253)
T PRK02083 200 VIASG---GAGNLEHFVEAFTEGGADAALAASIFH 231 (253)
T ss_pred EEEEC---CCCCHHHHHHHHHhCCccEEeEhHHHH
Confidence 35677 899999999999999999999999764
No 50
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=97.05 E-value=0.00039 Score=52.87 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=28.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
+++|| +|++..|+.+.+. +|||+|||||..|.-
T Consensus 286 vi~dG---GIr~g~Dv~KaLa-lGAd~V~igR~~l~~ 318 (367)
T TIGR02708 286 IVFDS---GVRRGQHVFKALA-SGADLVALGRPVIYG 318 (367)
T ss_pred EEeeC---CcCCHHHHHHHHH-cCCCEEEEcHHHHHH
Confidence 35677 8999999999998 999999999976643
No 51
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.76 E-value=0.0013 Score=46.32 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 7 SKEIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
+|+|.|.+|+.++++.+||||||+|.+.
T Consensus 203 ~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 203 LGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 4489999999998999999999999864
No 52
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=96.74 E-value=0.0038 Score=46.18 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=39.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDN 66 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (101)
||.| .|.|++|+..+++ +||+||++|+++...+ .+.+..+++.+....|.+
T Consensus 209 ~AeG---GI~TPedaa~vme-~GAdgVaVGSaI~ks~----------dP~~~akafv~ai~~~~~ 259 (293)
T PRK04180 209 FAAG---GIATPADAALMMQ-LGADGVFVGSGIFKSG----------DPEKRARAIVEATTHYDD 259 (293)
T ss_pred EEeC---CCCCHHHHHHHHH-hCCCEEEEcHHhhcCC----------CHHHHHHHHHHHHHHcCC
Confidence 4778 8999999999996 9999999999876432 234566777776666654
No 53
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.68 E-value=0.001 Score=50.29 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=30.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
+++| +|++..|+.+++. .||++|||||..+.-...
T Consensus 280 i~dG---GIr~g~Di~kaLa-lGA~~V~iGr~~l~~la~ 314 (351)
T cd04737 280 IFDS---GVRRGEHVFKALA-SGADAVAVGRPVLYGLAL 314 (351)
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCEEEECHHHHHHHhh
Confidence 5677 8999999999998 999999999977765543
No 54
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.44 E-value=0.0019 Score=46.37 Aligned_cols=30 Identities=13% Similarity=-0.007 Sum_probs=27.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
+++| +|.|++|+.++++.++|||||+|+..
T Consensus 203 ia~G---Gi~s~~di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 203 IASG---GAGKPEHFYEAFTKGKADAALAASVF 232 (254)
T ss_pred EEeC---CCCCHHHHHHHHHcCCcceeeEhHHH
Confidence 5677 89999999999999889999999975
No 55
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.34 E-value=0.0033 Score=46.35 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=37.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDN 66 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (101)
||.| .|.|++|+..+++ +|||||++|+++...+ .+.+..+++.+....|.+
T Consensus 203 fAiG---GI~TPedAa~~me-lGAdGVaVGSaI~ks~----------dP~~~akafv~ai~~~~~ 253 (287)
T TIGR00343 203 FAAG---GVATPADAALMMQ-LGADGVFVGSGIFKSS----------NPEKLAKAIVEATTHYDN 253 (287)
T ss_pred eccC---CCCCHHHHHHHHH-cCCCEEEEhHHhhcCC----------CHHHHHHHHHHHHHHcCC
Confidence 4777 8999999999997 8999999999876422 234556666665555554
No 56
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=96.29 E-value=0.0018 Score=48.52 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=33.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+++| .|.+++.+++.+++..||.|.+||+++.||.+...
T Consensus 295 i~~G---~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k 333 (341)
T PF00724_consen 295 IGVG---GIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNK 333 (341)
T ss_dssp EEES---STTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHH
T ss_pred EEEe---eecchhhhHHHHhcCCceEeeccHHHHhCchHHHH
Confidence 4566 89999999999999999999999999999987654
No 57
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.26 E-value=0.0036 Score=46.06 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=36.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYD 65 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~ 65 (101)
+|.| .|.+++++.++++ +||+||+++++++.-+ .+.+..+++.+....|.
T Consensus 200 iAeG---GI~Tpena~~v~e-~GAdgVaVGSAI~~a~----------dP~~~tk~f~~ai~~~~ 249 (283)
T cd04727 200 FAAG---GVATPADAALMMQ-LGADGVFVGSGIFKSE----------NPEKRARAIVEAVTHYD 249 (283)
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEEEcHHhhcCC----------CHHHHHHHHHHHHHhcC
Confidence 4788 8999999999996 8999999999887432 12345555555444443
No 58
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.26 E-value=0.0035 Score=47.73 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
+|.|+++++++++ +|||+||+|||.
T Consensus 194 ~V~t~e~A~~l~~-aGAD~V~VG~G~ 218 (368)
T PRK08649 194 GCVTYTTALHLMR-TGAAGVLVGIGP 218 (368)
T ss_pred CCCCHHHHHHHHH-cCCCEEEECCCC
Confidence 8999999999996 999999999986
No 59
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.25 E-value=0.0031 Score=47.75 Aligned_cols=39 Identities=10% Similarity=-0.008 Sum_probs=33.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++| .+ |++.+++.+++..||.|++||+++.||.+...+
T Consensus 296 ~~~G---~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~ 334 (362)
T PRK10605 296 IGAG---AY-TAEKAETLIGKGLIDAVAFGRDYIANPDLVARL 334 (362)
T ss_pred EEeC---CC-CHHHHHHHHHcCCCCEEEECHHhhhCccHHHHH
Confidence 3455 54 999999999988899999999999999988775
No 60
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.25 E-value=0.0019 Score=45.72 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.|.|.+|++.+++ .||++|++|..++.+|.+|.++
T Consensus 84 Gi~~~~~~~~~~~-~Ga~~v~iGs~~~~~~~~~~~i 118 (241)
T PRK13585 84 GIRSAEDAASLLD-LGVDRVILGTAAVENPEIVREL 118 (241)
T ss_pred CcCCHHHHHHHHH-cCCCEEEEChHHhhChHHHHHH
Confidence 7999999999995 8999999999999999988764
No 61
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.12 E-value=0.0055 Score=46.71 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
+|.|++++.++++ +|||+||+|||.-...
T Consensus 195 ~V~t~e~A~~~~~-aGaDgV~~G~gg~~~~ 223 (369)
T TIGR01304 195 GVNDYTTALHLMR-TGAAGVIVGPGGANTT 223 (369)
T ss_pred CCCCHHHHHHHHH-cCCCEEEECCCCCccc
Confidence 8999999999997 9999999999986543
No 62
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=96.07 E-value=0.0029 Score=47.32 Aligned_cols=33 Identities=24% Similarity=0.101 Sum_probs=28.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
+++| .|++.+|+.+++. .|||.||+||+.|..=
T Consensus 258 IasG---GI~~~~di~kaLa-lGAd~V~igr~~L~~~ 290 (333)
T TIGR02151 258 IASG---GLRTGLDVAKAIA-LGADAVGMARPFLKAA 290 (333)
T ss_pred EEEC---CCCCHHHHHHHHH-hCCCeehhhHHHHHHH
Confidence 5667 7999999999998 7999999999988654
No 63
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.94 E-value=0.0053 Score=43.01 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=28.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
+++| .|.+++|+.++++ .|||||++|++.+...++
T Consensus 181 ia~G---GI~~~~~~~~~l~-~GadgV~vGsal~~~~~~ 215 (219)
T cd04729 181 IAEG---RINSPEQAAKALE-LGADAVVVGSAITRPEHI 215 (219)
T ss_pred EEeC---CCCCHHHHHHHHH-CCCCEEEEchHHhChHhH
Confidence 4556 7999999999997 789999999997655443
No 64
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.94 E-value=0.007 Score=45.21 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=30.3
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
++|+| .|.+..|+.+.++ .||++||+|+..++-.-
T Consensus 200 VIA~G---GI~~~~di~kAla-~GA~~VmiGt~fa~t~E 234 (325)
T cd00381 200 VIADG---GIRTSGDIVKALA-AGADAVMLGSLLAGTDE 234 (325)
T ss_pred EEecC---CCCCHHHHHHHHH-cCCCEEEecchhccccc
Confidence 35777 8999999999996 99999999998887553
No 65
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.84 E-value=0.0073 Score=45.35 Aligned_cols=32 Identities=28% Similarity=0.201 Sum_probs=27.6
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++|+| .|.++.|+.+++.. ||++||+|+..++
T Consensus 204 VIAdG---GI~~~~Di~KaLa~-GA~aV~vG~~~~~ 235 (326)
T PRK05458 204 IIADG---GIRTHGDIAKSIRF-GATMVMIGSLFAG 235 (326)
T ss_pred EEEeC---CCCCHHHHHHHHHh-CCCEEEechhhcC
Confidence 46778 79999999999976 9999999977664
No 66
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=95.83 E-value=0.0036 Score=46.41 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=34.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~ 43 (101)
+++| .|.|.+|+.+++ ..||+.||++-+++. +|.+|.+
T Consensus 245 ig~G---GI~s~~da~e~i-~aGA~~Vqv~ta~~~~gp~~~~~ 283 (310)
T PRK02506 245 IGTG---GVKTGRDAFEHI-LCGASMVQVGTALHKEGPAVFER 283 (310)
T ss_pred EEEC---CCCCHHHHHHHH-HcCCCHHhhhHHHHHhChHHHHH
Confidence 5667 799999999999 799999999999997 6988876
No 67
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.78 E-value=0.0089 Score=41.91 Aligned_cols=33 Identities=24% Similarity=0.149 Sum_probs=28.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
+++| .|.+++|+.++++ .|+||||+|++.+..+
T Consensus 160 i~~G---GI~~~~~v~~~l~-~GadgV~vgS~l~~~~ 192 (236)
T cd04730 160 IAAG---GIADGRGIAAALA-LGADGVQMGTRFLATE 192 (236)
T ss_pred EEEC---CCCCHHHHHHHHH-cCCcEEEEchhhhcCc
Confidence 4566 7999999999995 8999999999998776
No 68
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=95.48 E-value=0.0057 Score=43.09 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+|.|.+|++++.+ .||++|++|++++.||.++.++
T Consensus 82 gi~~~~d~~~~~~-~G~~~vilg~~~l~~~~~~~~~ 116 (232)
T TIGR03572 82 GIRSLEDAKKLLS-LGADKVSINTAALENPDLIEEA 116 (232)
T ss_pred CCCCHHHHHHHHH-cCCCEEEEChhHhcCHHHHHHH
Confidence 7999999999764 6999999999999999866553
No 69
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.47 E-value=0.0076 Score=42.89 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
|.|.|.+|++++++ .|+++|.||..++ ||.+..+
T Consensus 80 GGIrs~edv~~l~~-~G~~~vivGtaa~-~~~~l~~ 113 (228)
T PRK04128 80 GGLRTYESIKDAYE-IGVENVIIGTKAF-DLEFLEK 113 (228)
T ss_pred CCCCCHHHHHHHHH-CCCCEEEECchhc-CHHHHHH
Confidence 37999999999986 6999999999999 9997765
No 70
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.43 E-value=0.0092 Score=41.80 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.+++|+.++++ .|+|+|++|++.+.
T Consensus 181 GI~t~~~~~~~l~-~GadgV~iGsai~~ 207 (221)
T PRK01130 181 RINTPEQAKKALE-LGAHAVVVGGAITR 207 (221)
T ss_pred CCCCHHHHHHHHH-CCCCEEEEchHhcC
Confidence 7999999999996 89999999987654
No 71
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.38 E-value=0.011 Score=43.77 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=27.2
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++++| +|.+.+|+.++++ .||||||+|...+.
T Consensus 164 viaaG---GI~~~~~~~~al~-~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 164 VIAAG---GIADGRGMAAAFA-LGAEAVQMGTRFLC 195 (307)
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEeecchHHhc
Confidence 35777 8999999999997 89999999994443
No 72
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=95.02 E-value=0.0039 Score=46.77 Aligned_cols=35 Identities=14% Similarity=-0.069 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP 43 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~ 43 (101)
|.|.|.+|+.+++. .|++.|+++++++.+ |.++.+
T Consensus 295 GGI~~~~da~e~l~-aGA~~Vqv~ta~~~~Gp~~~~~ 330 (335)
T TIGR01036 295 GGISSAQDALEKIR-AGASLLQIYSGFIYWGPPLVKE 330 (335)
T ss_pred CCCCCHHHHHHHHH-cCCcHHHhhHHHHHhCchHHHH
Confidence 38999999999996 799999999999885 998765
No 73
>PLN02411 12-oxophytodienoate reductase
Probab=94.54 E-value=0.027 Score=43.15 Aligned_cols=39 Identities=15% Similarity=-0.042 Sum_probs=33.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++| .| +.++++++++.-.||-|.+||++|.||.+...+
T Consensus 317 i~~G---~i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 317 MCSG---GF-TRELGMQAVQQGDADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred EEEC---CC-CHHHHHHHHHcCCCCEEEECHHHHhCccHHHHH
Confidence 4566 68 679999999877799999999999999987765
No 74
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=94.38 E-value=0.028 Score=42.44 Aligned_cols=32 Identities=28% Similarity=0.057 Sum_probs=28.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
+++| .|.|..|+.+++.. |||+|++||+.|..
T Consensus 265 ia~G---GI~~~~dv~k~l~~-GAd~v~ig~~~l~~ 296 (352)
T PRK05437 265 IASG---GIRNGLDIAKALAL-GADAVGMAGPFLKA 296 (352)
T ss_pred EEEC---CCCCHHHHHHHHHc-CCCEEEEhHHHHHH
Confidence 4666 79999999999975 99999999998864
No 75
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.30 E-value=0.035 Score=41.67 Aligned_cols=30 Identities=33% Similarity=0.248 Sum_probs=25.7
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
++|+| .|++..|+.+++. .|||+||+||-.
T Consensus 201 VIadG---GIr~~~Di~KALa-~GAd~Vmig~~~ 230 (321)
T TIGR01306 201 IIADG---GIRTHGDIAKSIR-FGASMVMIGSLF 230 (321)
T ss_pred EEEEC---CcCcHHHHHHHHH-cCCCEEeechhh
Confidence 36777 7999999999997 599999999643
No 76
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=94.22 E-value=0.029 Score=41.93 Aligned_cols=36 Identities=22% Similarity=0.100 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403 7 SKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP 43 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~ 43 (101)
.|.|.|.+|+.+++ .-||+.|.|+-|++-. |++|.+
T Consensus 247 vGGI~s~~DA~E~i-~aGA~~vQv~Tal~~~Gp~i~~~ 283 (310)
T COG0167 247 VGGIETGEDALEFI-LAGASAVQVGTALIYKGPGIVKE 283 (310)
T ss_pred ecCcCcHHHHHHHH-HcCCchheeeeeeeeeCchHHHH
Confidence 34799999999999 5899999999999999 999886
No 77
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.09 E-value=0.043 Score=39.78 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=26.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
++.| .|.+++|+.+++| .|||||+++-|..
T Consensus 179 I~eg---GI~tpeda~~Ame-lGAdgVlV~SAIt 208 (248)
T cd04728 179 IVDA---GIGTPSDAAQAME-LGADAVLLNTAIA 208 (248)
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEEEChHhc
Confidence 4566 6999999999996 9999999998876
No 78
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=94.09 E-value=0.043 Score=41.78 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=35.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++| .|.+++.++++++.-.+|-|=+||..|.||.+-..+
T Consensus 292 i~~G---~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~ 331 (363)
T COG1902 292 IAVG---GINDPEQAEEILASGRADLVAMGRPFLADPDLVLKA 331 (363)
T ss_pred EEeC---CCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHH
Confidence 4566 799999999999887899999999999999987664
No 79
>PRK00208 thiG thiazole synthase; Reviewed
Probab=94.05 E-value=0.043 Score=39.81 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=26.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
++.| .|.+++|+.+++| .|||||+++-|..
T Consensus 179 Ivea---GI~tpeda~~Ame-lGAdgVlV~SAIt 208 (250)
T PRK00208 179 IVDA---GIGTPSDAAQAME-LGADAVLLNTAIA 208 (250)
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEEEChHhh
Confidence 4566 6999999999997 8999999998875
No 80
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=94.01 E-value=0.06 Score=37.73 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.|.|.+|++++++ .||++|++|..++.+|..+.+
T Consensus 82 GI~~~ed~~~~~~-~Ga~~vilg~~~l~~~~~l~e 115 (233)
T PRK00748 82 GIRSLETVEALLD-AGVSRVIIGTAAVKNPELVKE 115 (233)
T ss_pred CcCCHHHHHHHHH-cCCCEEEECchHHhCHHHHHH
Confidence 7999999999887 699999999999999976654
No 81
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=93.96 E-value=0.047 Score=38.04 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.|.+++|+.++++ .|+|||.+|++++..+.
T Consensus 180 GI~s~edi~~~~~-~Ga~gvivGsai~~~~~ 209 (217)
T cd00331 180 GISTPEDVKRLAE-AGADAVLIGESLMRAPD 209 (217)
T ss_pred CCCCHHHHHHHHH-cCCCEEEECHHHcCCCC
Confidence 6999999999985 69999999999987665
No 82
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=93.92 E-value=0.041 Score=41.06 Aligned_cols=31 Identities=29% Similarity=0.056 Sum_probs=27.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+++| .|++..|+.+++. .|||+|++||..|.
T Consensus 259 iasG---GIr~~~dv~kal~-lGAd~V~i~~~~L~ 289 (326)
T cd02811 259 IASG---GIRNGLDIAKALA-LGADLVGMAGPFLK 289 (326)
T ss_pred EEEC---CCCCHHHHHHHHH-hCCCEEEEcHHHHH
Confidence 5667 7999999999997 59999999998664
No 83
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.56 E-value=0.041 Score=39.68 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
|+|.|.+|+++++ ..|+++|.|+.+++.||.++.++
T Consensus 81 GGi~s~~d~~~l~-~~G~~~vvigs~~~~~~~~~~~~ 116 (258)
T PRK01033 81 GGIKTLEQAKKIF-SLGVEKVSINTAALEDPDLITEA 116 (258)
T ss_pred CCCCCHHHHHHHH-HCCCCEEEEChHHhcCHHHHHHH
Confidence 3799999999998 56999999999999999877663
No 84
>PRK07695 transcriptional regulator TenI; Provisional
Probab=93.21 E-value=0.081 Score=36.51 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=26.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++.| .| +++++.++++ +|+++|+++++...
T Consensus 153 ia~G---GI-~~~~~~~~~~-~Ga~gvav~s~i~~ 182 (201)
T PRK07695 153 IAIG---GI-TPENTRDVLA-AGVSGIAVMSGIFS 182 (201)
T ss_pred EEEc---CC-CHHHHHHHHH-cCCCEEEEEHHHhc
Confidence 5667 79 9999999985 99999999999874
No 85
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=93.16 E-value=0.017 Score=42.19 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=31.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc-ccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAA-QDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA-l~nP~iF~~ 43 (101)
++.| .|.|.+|+.+++ .-|++.|+++-++ ...|.+|.+
T Consensus 248 ig~G---GI~s~~da~e~l-~aGA~~Vqv~Sal~~~Gp~~~~~ 286 (295)
T PF01180_consen 248 IGVG---GIHSGEDAIEFL-MAGASAVQVCSALIYRGPGVIRR 286 (295)
T ss_dssp EEES---S--SHHHHHHHH-HHTESEEEESHHHHHHGTTHHHH
T ss_pred EEeC---CcCCHHHHHHHH-HhCCCHheechhhhhcCcHHHHH
Confidence 4555 799999999999 5899999999999 668988876
No 86
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=93.00 E-value=0.084 Score=38.17 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=27.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
++.| .|.|.+|++++.+..|+.||.+||++...
T Consensus 195 iaSG---Gv~s~~Di~~l~~~~G~~GvIvG~ALy~g 227 (241)
T COG0106 195 IASG---GVSSLDDIKALKELSGVEGVIVGRALYEG 227 (241)
T ss_pred EEec---CcCCHHHHHHHHhcCCCcEEEEehHHhcC
Confidence 4555 79999999888865599999999998643
No 87
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=92.88 E-value=0.12 Score=39.76 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP 43 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~ 43 (101)
|.|.|.+|+.+++ .-||+.|+++-+++.+ |.++.+
T Consensus 277 GGI~s~~Da~e~i-~aGAs~VQv~Ta~~~~Gp~vi~~ 312 (385)
T PLN02495 277 GGVETGGDAAEFI-LLGADTVQVCTGVMMHGYPLVKN 312 (385)
T ss_pred CCCCCHHHHHHHH-HhCCCceeEeeeeeecCcHHHHH
Confidence 3799999999999 5899999999999999 988876
No 88
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=92.85 E-value=0.062 Score=38.61 Aligned_cols=34 Identities=15% Similarity=-0.084 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.|+|.+|++++++ .|++-|.||-.|+.||.++.+
T Consensus 82 GIrs~e~~~~~l~-~Ga~~vvigT~a~~~p~~~~~ 115 (243)
T TIGR01919 82 GRRDDSSLRAALT-GGRARVNGGTAALENPWWAAA 115 (243)
T ss_pred CCCCHHHHHHHHH-cCCCEEEECchhhCCHHHHHH
Confidence 6999999999997 799999999999999987755
No 89
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=92.71 E-value=0.07 Score=38.56 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
|.|+|.+++++.++ .|++-|.+|-.|+.||.++.++
T Consensus 82 GGIRs~~~v~~ll~-~G~~rViiGt~av~~p~~v~~~ 117 (241)
T COG0106 82 GGIRSLEDVEALLD-AGVARVIIGTAAVKNPDLVKEL 117 (241)
T ss_pred CCcCCHHHHHHHHH-CCCCEEEEecceecCHHHHHHH
Confidence 37999999999997 9999999999999999988774
No 90
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=92.71 E-value=0.12 Score=37.52 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.|.|++|+.++++ .|+|+|.||++++..|.+
T Consensus 219 GI~t~ed~~~~~~-~Gad~vlVGsaI~~~~dp 249 (260)
T PRK00278 219 GIFTPEDLKRLAK-AGADAVLVGESLMRADDP 249 (260)
T ss_pred CCCCHHHHHHHHH-cCCCEEEECHHHcCCCCH
Confidence 5999999999996 699999999999987653
No 91
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=92.62 E-value=0.08 Score=40.43 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=27.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
+|-| .|.+..|+.+.+. .|+|+||+|+..+.-
T Consensus 259 IAdG---GI~tg~di~kAlA-lGAdaV~iGt~~a~a 290 (369)
T TIGR01304 259 IADG---GIETSGDLVKAIA-CGADAVVLGSPLARA 290 (369)
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEeeeHHHHHhh
Confidence 4666 7999999999996 799999999987653
No 92
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.58 E-value=0.12 Score=36.82 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=25.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
+|.| .|.|.+|+.++.+ .|++||++|++.
T Consensus 186 iasG---Gv~~~~Dl~~l~~-~g~~gvivg~al 214 (228)
T PRK04128 186 IYAG---GVSSAEDVKKLAE-IGFSGVIIGKAL 214 (228)
T ss_pred EEEC---CCCCHHHHHHHHH-CCCCEEEEEhhh
Confidence 4556 7999999999987 799999999986
No 93
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=92.52 E-value=0.069 Score=38.12 Aligned_cols=35 Identities=26% Similarity=0.140 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.|+|.||+++++. .||+.|-+|-.++.||.++.++
T Consensus 83 Girs~edv~~~l~-~Ga~kvviGs~~l~~p~l~~~i 117 (241)
T PRK14024 83 GIRDDESLEAALA-TGCARVNIGTAALENPEWCARV 117 (241)
T ss_pred CCCCHHHHHHHHH-CCCCEEEECchHhCCHHHHHHH
Confidence 6999999999996 7999999999999999988764
No 94
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=92.44 E-value=0.071 Score=37.99 Aligned_cols=35 Identities=6% Similarity=0.088 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
|.|+|++++++++ ..|||+|.+|-.+..||..+.+
T Consensus 182 GGIrs~e~a~~l~-~aGAD~VVVGsai~~~p~~~~~ 216 (219)
T cd02812 182 GGIRSGEQAKEMA-EAGADTIVVGNIVEEDPNAALE 216 (219)
T ss_pred CCCCCHHHHHHHH-HcCCCEEEECchhhCCHHHHHH
Confidence 3799999999988 5799999999999999987654
No 95
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=92.41 E-value=0.11 Score=37.67 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.|.|.+|+.+++ ..|+|-|-|--+|+.||.+.+++
T Consensus 82 GI~s~eD~~~ll-~aGADKVSINsaAv~~p~lI~~~ 116 (256)
T COG0107 82 GIRSVEDARKLL-RAGADKVSINSAAVKDPELITEA 116 (256)
T ss_pred CcCCHHHHHHHH-HcCCCeeeeChhHhcChHHHHHH
Confidence 699999999999 48999999999999999987663
No 96
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.40 E-value=0.071 Score=38.04 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.|+|.+|++++++ .||+-|.||-.++.||.++.++
T Consensus 84 GIrs~e~v~~~l~-~Ga~kvvigt~a~~~~~~l~~~ 118 (234)
T PRK13587 84 GIRTKSQIMDYFA-AGINYCIVGTKGIQDTDWLKEM 118 (234)
T ss_pred CcCCHHHHHHHHH-CCCCEEEECchHhcCHHHHHHH
Confidence 6999999999995 7999999999999999887664
No 97
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=92.24 E-value=0.088 Score=38.29 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
|.|++|+.++. ..|+|||+||...|.+|..
T Consensus 218 I~~~~d~~~l~-~~G~davLVGe~lm~~~d~ 247 (254)
T PF00218_consen 218 IKTPEDARRLA-RAGADAVLVGEALMRSPDP 247 (254)
T ss_dssp -SSHHHHHHHC-TTT-SEEEESHHHHTSSSH
T ss_pred CCCHHHHHHHH-HCCCCEEEECHHHhCCCCH
Confidence 99999998877 6899999999999998864
No 98
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=92.05 E-value=0.13 Score=36.43 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
++.| .|.|.+|+.++.+ .|+++|++|.++.
T Consensus 188 ia~G---Gi~s~ed~~~l~~-~Ga~~vivgsal~ 217 (221)
T TIGR00734 188 MLGG---GISGVEDLELLKE-MGVSAVLVATAVH 217 (221)
T ss_pred EEeC---CCCCHHHHHHHHH-CCCCEEEEhHHhh
Confidence 3455 7999999998654 7999999998764
No 99
>KOG1606|consensus
Probab=91.93 E-value=0.2 Score=36.02 Aligned_cols=28 Identities=4% Similarity=0.030 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
|.|-++.|+.-++ +.|||||-+|-|...
T Consensus 216 GGvaTPADAALmM-QLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 216 GGVATPADAALMM-QLGCDGVFVGSGIFK 243 (296)
T ss_pred cCcCChhHHHHHH-HcCCCeEEecccccc
Confidence 3799999997777 699999999988543
No 100
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.65 E-value=0.1 Score=37.29 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.|+|.+|+++.++ .|++-|.||-.++.||.++.++
T Consensus 81 GIrs~e~~~~~l~-~Ga~kvvigt~a~~~p~~~~~~ 115 (232)
T PRK13586 81 GIRDIEKAKRLLS-LDVNALVFSTIVFTNFNLFHDI 115 (232)
T ss_pred CcCCHHHHHHHHH-CCCCEEEECchhhCCHHHHHHH
Confidence 6999999999996 7999999999999999987663
No 101
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.52 E-value=0.11 Score=37.35 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.|+|.+|+++.++ .|++-|.||-.|+.||.++.+
T Consensus 81 GIrs~e~~~~~l~-~Ga~rvvigT~a~~~p~~l~~ 114 (241)
T PRK14114 81 GIRSLDYAEKLRK-LGYRRQIVSSKVLEDPSFLKF 114 (241)
T ss_pred CCCCHHHHHHHHH-CCCCEEEECchhhCCHHHHHH
Confidence 6999999999996 799999999999999976644
No 102
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.52 E-value=0.18 Score=39.04 Aligned_cols=32 Identities=31% Similarity=0.280 Sum_probs=28.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
+|-| .|++.+|+.+++. .||++||+|+...+-
T Consensus 260 IAdG---GI~~~~Di~KALa-lGA~aVmvGs~~agt 291 (404)
T PRK06843 260 IADG---GIRFSGDVVKAIA-AGADSVMIGNLFAGT 291 (404)
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEEEcceeeee
Confidence 5667 7999999999996 999999999988773
No 103
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=91.52 E-value=0.19 Score=35.91 Aligned_cols=35 Identities=6% Similarity=0.092 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
|.|+|.+++++++ ..|+|+|.+|-.+..||..+.+
T Consensus 186 GGIrs~e~a~~l~-~aGAD~VVVGs~~~~dp~~~~~ 220 (223)
T TIGR01768 186 GGIRSVEKAREMA-EAGADTIVTGNVIEEDVDKALE 220 (223)
T ss_pred cCCCCHHHHHHHH-HcCCCEEEECcHHhhCHHHHHH
Confidence 3799999999988 4699999999999999876543
No 104
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=91.48 E-value=0.1 Score=36.54 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.|.+.+|++++++ .||+.|+++-.++.||-.+.++
T Consensus 80 GI~~~ed~~~~~~-~Ga~~vvlgs~~l~d~~~~~~~ 114 (230)
T TIGR00007 80 GIRSLEDVEKLLD-LGVDRVIIGTAAVENPDLVKEL 114 (230)
T ss_pred CcCCHHHHHHHHH-cCCCEEEEChHHhhCHHHHHHH
Confidence 6999999999996 8999999999999999877664
No 105
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=91.40 E-value=0.24 Score=37.51 Aligned_cols=31 Identities=3% Similarity=0.079 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.|.|++|+.++.+ .|+|+|.||...|..|..
T Consensus 296 GI~t~~Dv~~l~~-~GadAvLVGEsLMr~~dp 326 (338)
T PLN02460 296 GLFTPDDVAYVQN-AGVKAVLVGESLVKQDDP 326 (338)
T ss_pred CCCCHHHHHHHHH-CCCCEEEECHHHhCCCCH
Confidence 3999999988885 899999999999998764
No 106
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=91.23 E-value=0.23 Score=36.19 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
|.+++|+.++. ..|++|+.||.+.|.+|.+
T Consensus 216 I~~~~dv~~l~-~~ga~a~LVG~slM~~~~~ 245 (254)
T COG0134 216 ISTPEDVRRLA-KAGADAFLVGEALMRADDP 245 (254)
T ss_pred CCCHHHHHHHH-HcCCCEEEecHHHhcCCCH
Confidence 99999998877 5999999999999999876
No 107
>PLN02535 glycolate oxidase
Probab=91.16 E-value=0.24 Score=37.77 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=30.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~ 42 (101)
++-| .|.+..|+.+.+. .|+++|||||..+.-+..-.
T Consensus 282 i~dG---GIr~g~Dv~KALa-lGA~aV~vGr~~l~~l~~~g 318 (364)
T PLN02535 282 LLDG---GVRRGTDVFKALA-LGAQAVLVGRPVIYGLAAKG 318 (364)
T ss_pred EeeC---CCCCHHHHHHHHH-cCCCEEEECHHHHhhhhhcc
Confidence 3455 7999999999995 79999999999888766533
No 108
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.09 E-value=0.26 Score=35.20 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
|.|.|.+|+.++. ..|++||.+|+++-
T Consensus 196 GGv~s~~Dl~~l~-~~G~~gvivg~Aly 222 (232)
T PRK13586 196 GGVSSDADLEYLK-NVGFDYIIVGMAFY 222 (232)
T ss_pred CCCCCHHHHHHHH-HCCCCEEEEehhhh
Confidence 3799999999998 47999999999865
No 109
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=90.98 E-value=0.26 Score=34.97 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|.|.+|++++++ .|+++|.+|.++..+
T Consensus 197 Gi~s~edi~~l~~-~G~~~vivGsal~~g 224 (233)
T cd04723 197 GVRSVEDLELLKK-LGASGALVASALHDG 224 (233)
T ss_pred CCCCHHHHHHHHH-cCCCEEEEehHHHcC
Confidence 7999999999987 699999999987544
No 110
>PLN02826 dihydroorotate dehydrogenase
Probab=90.69 E-value=0.082 Score=40.87 Aligned_cols=35 Identities=14% Similarity=-0.017 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP 43 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~ 43 (101)
|.|.|.+|+.+++. -|++.|+|+++.+-+ |+++.+
T Consensus 348 GGI~sg~Da~e~i~-AGAs~VQv~Ta~~~~Gp~~i~~ 383 (409)
T PLN02826 348 GGVSSGEDAYKKIR-AGASLVQLYTAFAYEGPALIPR 383 (409)
T ss_pred CCCCCHHHHHHHHH-hCCCeeeecHHHHhcCHHHHHH
Confidence 37999999999995 799999999998875 766554
No 111
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=89.99 E-value=0.38 Score=34.93 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.|.|++|+.++.+ . +|||.||...|.+|..
T Consensus 210 GI~t~~d~~~l~~-~-~davLvG~~lm~~~d~ 239 (247)
T PRK13957 210 GIESRSDLDKFRK-L-VDAALIGTYFMEKKDI 239 (247)
T ss_pred CCCCHHHHHHHHH-h-CCEEEECHHHhCCCCH
Confidence 3999999999886 4 9999999999998864
No 112
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.63 E-value=0.27 Score=37.49 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=27.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+|.| .|.+..|+.+.+. .|+|+||+|+...+
T Consensus 260 IAdG---GI~~~~diakAla-lGAd~Vm~Gs~fa~ 290 (368)
T PRK08649 260 IADG---GIGTSGDIAKAIA-CGADAVMLGSPLAR 290 (368)
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCeecccchhcc
Confidence 4666 7999999999996 79999999998776
No 113
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=89.42 E-value=0.21 Score=35.83 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=25.2
Q ss_pred ccCCCCCCCCCHHHHHHHHH--hcCCCeeeeecccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKA--DTNASSVMIARAAQ 35 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~--~tg~dgvMigRgAl 35 (101)
+|.| .|.|.+|+.++.+ ..|++||++|++..
T Consensus 197 iasG---Gv~s~eDl~~l~~l~~~Gv~gvivg~Al~ 229 (243)
T TIGR01919 197 AASG---GSSLLDDLRAIKYLDEGGVSVAIGGKLLY 229 (243)
T ss_pred EEEC---CcCCHHHHHHHHhhccCCeeEEEEhHHHH
Confidence 4555 7999999999854 46999999999864
No 114
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=89.27 E-value=0.13 Score=36.41 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.|+|.+|+++.++ .||+-|.|+..++.||.++.++
T Consensus 81 GIrs~ed~~~ll~-~Ga~~Vvigt~~~~~~~~l~~~ 115 (229)
T PF00977_consen 81 GIRSIEDAERLLD-AGADRVVIGTEALEDPELLEEL 115 (229)
T ss_dssp SE-SHHHHHHHHH-TT-SEEEESHHHHHCCHHHHHH
T ss_pred ccCcHHHHHHHHH-hCCCEEEeChHHhhchhHHHHH
Confidence 5999999999996 8999999999999999988764
No 115
>PRK06739 pyruvate kinase; Validated
Probab=89.25 E-value=0.93 Score=34.52 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=32.7
Q ss_pred CCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHhhhCC
Q psy4403 25 ASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGS 81 (101)
Q Consensus 25 ~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~l~~~~~~ 81 (101)
+||||||||=|+-=-=|.+ .| .+=++.++.|.++..+.--.-++|-.|...
T Consensus 230 sDgimVARGDLgve~~~e~----vp--~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~ 280 (352)
T PRK06739 230 ADGIMIARGDLGVELPYQF----IP--LLQKMMIQECNRTNTYVITATQMLQSMVDH 280 (352)
T ss_pred cCEEEEECcccccccCHHH----HH--HHHHHHHHHHHHhCCCEEEEcchHHhhccC
Confidence 5999999998874322221 12 344566777888776655556677777654
No 116
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.11 E-value=0.33 Score=34.62 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.|.+|+.++++ .|+++|.+|.++..
T Consensus 200 Gi~s~edi~~l~~-~G~~~vivG~a~~~ 226 (234)
T PRK13587 200 GIRHQQDIQRLAS-LNVHAAIIGKAAHQ 226 (234)
T ss_pred CCCCHHHHHHHHH-cCCCEEEEhHHHHh
Confidence 7999999999985 89999999998764
No 117
>PRK04302 triosephosphate isomerase; Provisional
Probab=88.68 E-value=0.56 Score=32.97 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.|.+++++.++. +.|+|||.+|.+.+.-|.
T Consensus 181 gI~~~e~~~~~~-~~gadGvlVGsa~l~~~~ 210 (223)
T PRK04302 181 GISTGEDVKAAL-ELGADGVLLASGVVKAKD 210 (223)
T ss_pred CCCCHHHHHHHH-cCCCCEEEEehHHhCCcC
Confidence 799999999877 599999999999996543
No 118
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=88.65 E-value=0.89 Score=34.86 Aligned_cols=27 Identities=26% Similarity=0.081 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
-|.|..|+.+++. -|||+|.+||.+|.
T Consensus 293 GI~~g~Dv~kala-LGAd~V~ig~~~l~ 319 (392)
T cd02808 293 GLRTGADVAKALA-LGADAVGIGTAALI 319 (392)
T ss_pred CCCCHHHHHHHHH-cCCCeeeechHHHH
Confidence 7999999999996 79999999999984
No 119
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=88.49 E-value=0.46 Score=37.56 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=27.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++.| .|.++.|+.+.+. .|+++||+|+...+
T Consensus 348 IadG---Gi~~~~di~kAla-~GA~~Vm~G~~~a~ 378 (495)
T PTZ00314 348 IADG---GIKNSGDICKALA-LGADCVMLGSLLAG 378 (495)
T ss_pred EecC---CCCCHHHHHHHHH-cCCCEEEECchhcc
Confidence 4566 7999999999996 99999999998655
No 120
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=87.60 E-value=0.56 Score=33.70 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.|+|.++++++++ .|||+|.+|-.+..||.
T Consensus 192 GIrs~e~a~~~l~-~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 192 GIRSPEQARELMA-AGADTIVVGNIIEEDPK 221 (232)
T ss_pred CCCCHHHHHHHHH-hCCCEEEEChHHhhCHH
Confidence 7999999999885 79999999999998886
No 121
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=87.53 E-value=0.45 Score=36.29 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDY 64 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~ 64 (101)
.|++..|+.+.+ ..|++.|||||..|.-=....+ .+-...-+.+++-++.+...
T Consensus 297 GIr~g~Dv~KAL-aLGA~aV~iGr~~l~~la~~G~-~gv~~~l~~l~~el~~~m~l 350 (361)
T cd04736 297 GIRRGSDIVKAL-ALGANAVLLGRATLYGLAARGE-AGVSEVLRLLKEEIDRTLAL 350 (361)
T ss_pred CCCCHHHHHHHH-HcCCCEEEECHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHH
Confidence 799999999999 4899999999977643332222 12111224455555544443
No 122
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=87.47 E-value=0.45 Score=35.97 Aligned_cols=32 Identities=19% Similarity=0.045 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
|.|.+..|+.+++. -|+++|+|||..+..+..
T Consensus 278 GGIr~G~Dv~kala-LGA~aV~iG~~~l~~l~~ 309 (344)
T cd02922 278 GGVRRGTDVLKALC-LGAKAVGLGRPFLYALSA 309 (344)
T ss_pred CCCCCHHHHHHHHH-cCCCEEEECHHHHHHHhh
Confidence 37999999999995 699999999999987755
No 123
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=87.26 E-value=0.33 Score=34.40 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=23.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
++.| .|.|.+|+.++. ..|++||++|++..
T Consensus 195 iasG---Gv~~~~Dl~~l~-~~G~~gvivg~al~ 224 (229)
T PF00977_consen 195 IASG---GVRSLEDLRELK-KAGIDGVIVGSALH 224 (229)
T ss_dssp EEES---S--SHHHHHHHH-HTTECEEEESHHHH
T ss_pred EEec---CCCCHHHHHHHH-HCCCcEEEEehHhh
Confidence 3455 799999999988 79999999999763
No 124
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.17 E-value=0.42 Score=34.35 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=25.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHhc----C-CCeeeeecccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADT----N-ASSVMIARAAQ 35 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~t----g-~dgvMigRgAl 35 (101)
+|.| .|.|.+|+.++.+.. | ++||.+|++..
T Consensus 192 iasG---Gv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~ 227 (241)
T PRK14114 192 FAAG---GISSENSLKTAQRVHRETNGLLKGVIVGRAFL 227 (241)
T ss_pred EEEC---CCCCHHHHHHHHhcccccCCcEEEEEEehHHH
Confidence 4556 799999999998752 5 99999999863
No 125
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=87.00 E-value=0.72 Score=38.08 Aligned_cols=30 Identities=7% Similarity=0.139 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
|.+++|+.++.+ .|+|+|+||...|..|.+
T Consensus 220 I~~~~d~~~l~~-~G~davLIGeslm~~~dp 249 (695)
T PRK13802 220 VFGAVEVEDYAR-AGADAVLVGEGVATADDH 249 (695)
T ss_pred CCCHHHHHHHHH-CCCCEEEECHHhhCCCCH
Confidence 999999999885 899999999999999974
No 126
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=86.42 E-value=0.75 Score=36.13 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.|.|++|+.++.+ |+|||.||...|.+|.
T Consensus 218 GI~t~~d~~~~~~--~~davLiG~~lm~~~d 246 (454)
T PRK09427 218 GIYTHAQVRELSP--FANGFLIGSSLMAEDD 246 (454)
T ss_pred CCCCHHHHHHHHh--cCCEEEECHHHcCCCC
Confidence 3999999999864 6999999999999997
No 127
>PRK14725 pyruvate kinase; Provisional
Probab=86.19 E-value=1.4 Score=35.83 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=32.6
Q ss_pred CCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHhhhCC
Q psy4403 25 ASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGS 81 (101)
Q Consensus 25 ~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~l~~~~~~ 81 (101)
+||||||||=|+-=-=|.+ + ..+=++.+..|..+..+.--.-++|-.|..+
T Consensus 501 ~DGIMIARGDLgvEi~~e~----l--p~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~ 551 (608)
T PRK14725 501 RFGVMIARGDLAVEVGFER----L--AEVQEEILWLCEAAHVPVIWATQVLESLAKK 551 (608)
T ss_pred CcEEEEECCccccccCHHH----H--HHHHHHHHHHHHHcCCCEEEEcchHhhhccC
Confidence 6999999998864222221 1 1344667777887776655556777777644
No 128
>PRK14567 triosephosphate isomerase; Provisional
Probab=85.87 E-value=0.85 Score=33.21 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~ 42 (101)
.| +++++.++++.-.+||++||++.| +|.-|.
T Consensus 210 SV-~~~N~~~l~~~~diDG~LVGgasL-~~~~F~ 241 (253)
T PRK14567 210 SL-KAENAKDILSLPDVDGGLIGGASL-KAAEFN 241 (253)
T ss_pred cC-CHHHHHHHHcCCCCCEEEeehhhh-cHHHHH
Confidence 67 999999999999999999999998 554444
No 129
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=85.85 E-value=0.6 Score=35.56 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=23.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
+|-| .|.+..|+.+.+. .|+|.||+|+-.
T Consensus 215 IADG---Gi~~sGDi~KAla-~GAd~VMlG~ll 243 (352)
T PF00478_consen 215 IADG---GIRTSGDIVKALA-AGADAVMLGSLL 243 (352)
T ss_dssp EEES---S-SSHHHHHHHHH-TT-SEEEESTTT
T ss_pred eecC---CcCcccceeeeee-ecccceeechhh
Confidence 5667 7999999999994 899999999743
No 130
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=85.56 E-value=0.53 Score=36.17 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=26.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++.| .|++..|+.+.+. .|+++||+||..+.
T Consensus 304 i~dG---GIr~g~Di~KALa-LGA~~V~iGr~~l~ 334 (381)
T PRK11197 304 LADS---GIRNGLDVVRMIA-LGADTVLLGRAFVY 334 (381)
T ss_pred EeeC---CcCcHHHHHHHHH-cCcCceeEhHHHHH
Confidence 4555 7999999999995 79999999997654
No 131
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=85.44 E-value=0.63 Score=35.80 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
.|++..|+.+.+. .|+|+|+|||..+
T Consensus 316 GIr~G~Dv~KALa-LGA~~v~iGr~~l 341 (383)
T cd03332 316 GVRTGADIMKALA-LGAKAVLIGRPYA 341 (383)
T ss_pred CcCcHHHHHHHHH-cCCCEEEEcHHHH
Confidence 7999999999995 7999999999877
No 132
>PLN02461 Probable pyruvate kinase
Probab=85.36 E-value=0.7 Score=36.88 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHhc-CCCeeeeecccccC
Q psy4403 11 VDYGGILKFKADT-NASSVMIARAAQDN 37 (101)
Q Consensus 11 ~s~~d~~~~~~~t-g~dgvMigRgAl~n 37 (101)
-+++.++++-+-- -+||||||||=|+-
T Consensus 243 E~~~av~nl~eIi~~sDgIMVARGDLGv 270 (511)
T PLN02461 243 ENQEGLDNFDDILAESDAFMVARGDLGM 270 (511)
T ss_pred CCHHHHHHHHHHHHhcCEEEEecccccc
Confidence 3444444444332 27999999998875
No 133
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=85.33 E-value=0.81 Score=35.98 Aligned_cols=31 Identities=32% Similarity=0.284 Sum_probs=26.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+|.| .|+++.|+.+++. .|||.||+|...-+
T Consensus 335 iadG---Gi~~~~di~kAla-~GA~~v~~G~~~a~ 365 (486)
T PRK05567 335 IADG---GIRYSGDIAKALA-AGASAVMLGSMLAG 365 (486)
T ss_pred EEcC---CCCCHHHHHHHHH-hCCCEEEECccccc
Confidence 4566 7999999999996 79999999976544
No 134
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=84.98 E-value=0.53 Score=33.29 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHh-cCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKAD-TNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~-tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.|+|.+|+++++.. .+|+-|.||-.++.||.++.++
T Consensus 85 Girs~e~~~~~~~~l~~a~rvvigT~a~~~p~~l~~~ 121 (221)
T TIGR00734 85 GVRSPEDLETLPFTLEFASRVVVATETLDITELLREC 121 (221)
T ss_pred ccCCHHHHHHHHhhhccceEEeecChhhCCHHHHHHh
Confidence 69999999999764 3699999999999999977664
No 135
>PTZ00066 pyruvate kinase; Provisional
Probab=84.91 E-value=3.4 Score=33.08 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhc-CCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHhhhCC
Q psy4403 12 DYGGILKFKADT-NASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGS 81 (101)
Q Consensus 12 s~~d~~~~~~~t-g~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~l~~~~~~ 81 (101)
+.+.++++-+-- -+||||||||=|+-=-=|.+ .|. +=++.++.|.++..+.--.-++|-.|..+
T Consensus 260 ~~~av~NldeIl~~sDGIMVARGDLGvEip~e~----vp~--~QK~II~~c~~~gkPVIvATQmLeSMi~n 324 (513)
T PTZ00066 260 NIEGLINFDEILAESDGIMVARGDLGMEIPPEK----VFL--AQKMMISKCNVAGKPVITATQMLESMIKN 324 (513)
T ss_pred CHHHHHHHHHHHHhcCEEEEEccccccccChHH----cch--HHHHHHHHHHHhCCCEEEechhHHHHhhC
Confidence 334443333332 26999999998874222221 232 23455566777766654456677777654
No 136
>PLN02762 pyruvate kinase complex alpha subunit
Probab=84.86 E-value=0.77 Score=36.60 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHhc-CCCeeeeecccccC
Q psy4403 10 IVDYGGILKFKADT-NASSVMIARAAQDN 37 (101)
Q Consensus 10 I~s~~d~~~~~~~t-g~dgvMigRgAl~n 37 (101)
|-+++.+..+-+-- -+||||||||=|+-
T Consensus 253 IE~~~av~nl~eIi~~sDgiMVARGDLGv 281 (509)
T PLN02762 253 IESLDSLKNLEEIIRASDGAMVARGDLGA 281 (509)
T ss_pred eCCHHHHHHHHHHHHhcCEEEEecCcccc
Confidence 33444444444332 37999999997764
No 137
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=84.75 E-value=0.88 Score=33.34 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=34.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhc-CCCeeeeecccccCCCccCCCCCCCCHHHHHHHH
Q psy4403 2 DPSGGSKEIVDYGGILKFKADT-NASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEY 57 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~t-g~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~ 57 (101)
+|.| .|.|.+|+.++.+.. |+.||.+|+++- ||. +..+..+.+..|
T Consensus 211 IASG---Gv~sleDi~~L~~~g~g~~gvIvGkAl~----~y~---g~~~l~ea~~~~ 257 (262)
T PLN02446 211 TYAG---GVRSLDDLERVKVAGGGRVDVTVGSALD----IFG---GNLPYDDVVAWH 257 (262)
T ss_pred EEEC---CCCCHHHHHHHHHcCCCCEEEEEEeeHH----HhC---CCccHHHHHHHH
Confidence 4566 799999999998764 789999999974 444 345666655544
No 138
>PLN02979 glycolate oxidase
Probab=84.37 E-value=0.75 Score=35.22 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=26.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++.| .|++..|+.+.+. .|+|+|+|||..|.
T Consensus 282 i~dG---GIr~G~Di~KALA-LGAdaV~iGrp~L~ 312 (366)
T PLN02979 282 FLDG---GVRRGTDVFKALA-LGASGIFIGRPVVF 312 (366)
T ss_pred EEeC---CcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 4455 7999999999995 79999999997664
No 139
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=84.07 E-value=0.98 Score=35.21 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=31.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+|.| .|++..|+.++++ -||+.||+|+...+-...-.+
T Consensus 331 iadG---Gi~~~~di~kAla-~GA~~V~~G~~~a~~~e~pg~ 368 (450)
T TIGR01302 331 IADG---GIRYSGDIVKALA-AGADAVMLGSLLAGTTESPGE 368 (450)
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEEECchhhcCCcCCCc
Confidence 5667 6999999999996 699999999988776665544
No 140
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.85 E-value=0.88 Score=36.14 Aligned_cols=31 Identities=23% Similarity=0.081 Sum_probs=26.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++-| .|++..|+.+.+. .|+|+||+||-.-+
T Consensus 356 iadg---Gir~~gdi~KAla-~GA~~vm~G~~~ag 386 (502)
T PRK07107 356 CSDG---GIVYDYHMTLALA-MGADFIMLGRYFAR 386 (502)
T ss_pred EEcC---CCCchhHHHHHHH-cCCCeeeeChhhhc
Confidence 4556 6999999999996 99999999997655
No 141
>PLN02765 pyruvate kinase
Probab=83.77 E-value=0.9 Score=36.39 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=11.0
Q ss_pred CCeeeeecccccC
Q psy4403 25 ASSVMIARAAQDN 37 (101)
Q Consensus 25 ~dgvMigRgAl~n 37 (101)
+||||||||=|+-
T Consensus 272 sDgIMVARGDLGv 284 (526)
T PLN02765 272 ADGIILSRGNLGI 284 (526)
T ss_pred cCEEEEecCcccc
Confidence 6999999997764
No 142
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=83.68 E-value=0.45 Score=34.86 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccC----CCccCC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDN----CSIFSP 43 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n----P~iF~~ 43 (101)
|.|++ ++++++++ .||+-|.||-.|+.| |.++.+
T Consensus 90 GGIR~-e~i~~~l~-~Ga~rViigT~Av~~~~~~p~~v~~ 127 (262)
T PLN02446 90 GGVNS-ENAMSYLD-AGASHVIVTSYVFRDGQIDLERLKD 127 (262)
T ss_pred CCccH-HHHHHHHH-cCCCEEEEchHHHhCCCCCHHHHHH
Confidence 36996 99999995 999999999999999 876654
No 143
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=83.37 E-value=0.51 Score=35.98 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDN 66 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (101)
|.|++..|+.+++. .||+.|+|||..|.-=..=.+ .|-...-+.+++-++.+...-+
T Consensus 280 GGiR~G~Dv~KAlA-LGA~~v~igrp~L~~l~~~g~-~GV~~~le~~~~El~~~M~L~G 336 (360)
T COG1304 280 GGIRSGLDVAKALA-LGADAVGIGRPFLYGLAAGGE-AGVERVLEIIRKELKIAMALTG 336 (360)
T ss_pred CCCCCHHHHHHHHH-hCCchhhhhHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 37999999999995 899999999966543222111 1111122556666666655544
No 144
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=82.81 E-value=1.7 Score=31.83 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYD 65 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~ 65 (101)
.|-|+.|+.-++ +.|||||-+|-| ||.. . .+.+..+...+-...|.
T Consensus 216 GvATPADAALMM-~LGadGVFVGSG------IFKS-~---~P~~~A~AIV~A~~~yd 261 (296)
T COG0214 216 GVATPADAALMM-QLGADGVFVGSG------IFKS-S---NPEKRAKAIVEATTHYD 261 (296)
T ss_pred CcCChhHHHHHH-HhCCCeEEeccc------ccCC-C---CHHHHHHHHHHHHHccC
Confidence 799999997777 699999999988 4554 2 23344454444343343
No 145
>KOG2334|consensus
Probab=82.61 E-value=0.69 Score=36.22 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=51.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHhhhCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGS 81 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~l~~~~~~ 81 (101)
.+|| ++....+. ..+++.++|.+||++.|-+||.. .+..-|+++...++.-.--........+|.+..|...
T Consensus 389 ~~~~---~~ye~~~~----~d~lf~si~~~~~~~~~ssi~~~-n~k~aeq~aa~~~l~~s~l~e~~V~~~~~sl~~~~a~ 460 (477)
T KOG2334|consen 389 KANG---PVYETVQR----TDKLFSSIATARGQKYNSSIWSP-NKKSAEQDAAIVALRKSNLWEADVGSENYSLKEMIAH 460 (477)
T ss_pred cCCC---cchhhhhh----hhhhhHHHhhhhhhhhhccccCc-chhhHHHHHHHHHHHhcCcchhhhcccchhHHHHHhh
Confidence 3566 77766664 46788899999999999999997 5545566777777775544444455567777777643
No 146
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=82.59 E-value=1.1 Score=35.41 Aligned_cols=33 Identities=21% Similarity=0.095 Sum_probs=28.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
+|-| .|.++.|+.+++. .||++||+|.-..+-.
T Consensus 334 ia~g---gi~~~~~~~~al~-~ga~~v~~g~~~ag~~ 366 (479)
T PRK07807 334 WADG---GVRHPRDVALALA-AGASNVMIGSWFAGTY 366 (479)
T ss_pred EecC---CCCCHHHHHHHHH-cCCCeeeccHhhccCc
Confidence 5667 7999999999997 7999999998776544
No 147
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=82.08 E-value=1.3 Score=35.19 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=26.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+|-| .|.+.+|+.+.+. .||++||+|....+
T Consensus 355 IadG---GI~~~~di~kAla-~GA~~V~vGs~~~~ 385 (505)
T PLN02274 355 IADG---GISNSGHIVKALT-LGASTVMMGSFLAG 385 (505)
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEEEchhhcc
Confidence 4556 7999999999996 79999999987665
No 148
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=81.79 E-value=1.1 Score=34.25 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=26.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++.| .|++..|+.+.+. .|+++|+|||..|.
T Consensus 283 i~dG---GIr~G~Dv~KALA-LGA~aV~iGr~~l~ 313 (367)
T PLN02493 283 FLDG---GVRRGTDVFKALA-LGASGIFIGRPVVF 313 (367)
T ss_pred EEeC---CcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 4455 7999999999996 69999999997664
No 149
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=81.78 E-value=1.3 Score=34.90 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=25.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
+|-| .|.++.|+.+.+. .|++.||+|.-.-
T Consensus 332 iadG---gi~~~~di~kala-~GA~~vm~g~~~a 361 (475)
T TIGR01303 332 WADG---GVRHPRDVALALA-AGASNVMVGSWFA 361 (475)
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEeechhhc
Confidence 5666 7999999999996 9999999997543
No 150
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=80.25 E-value=0.74 Score=33.53 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.|++ ++++++++ .||+.|.||-.|+.||.
T Consensus 84 GIr~-e~v~~~l~-aGa~rVvIGS~av~~~~ 112 (253)
T TIGR02129 84 GIND-TNAQEWLD-EGASHVIVTSWLFTKGK 112 (253)
T ss_pred CcCH-HHHHHHHH-cCCCEEEECcHHHhCCC
Confidence 6997 99999996 99999999999999943
No 151
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=79.92 E-value=1.6 Score=33.26 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeee
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIA 31 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMig 31 (101)
++-| .|++..|+.+.+. .|+|.||+|
T Consensus 216 IaDG---GIr~~gDI~KALA-~GAd~VMlG 241 (343)
T TIGR01305 216 ISDG---GCTCPGDVAKAFG-AGADFVMLG 241 (343)
T ss_pred EEcC---CcCchhHHHHHHH-cCCCEEEEC
Confidence 4556 6999999999996 999999999
No 152
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=79.92 E-value=0.91 Score=32.64 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.|+|.+.++++. +.|+|.|.+|-....||++
T Consensus 190 GIrs~e~A~~~~-~aGAD~IVvGn~iee~~~~ 220 (230)
T PF01884_consen 190 GIRSPEQAREMA-EAGADTIVVGNAIEEDPDL 220 (230)
T ss_dssp S--SHHHHHHHH-CTTSSEEEESCHHHHHH-H
T ss_pred CcCCHHHHHHHH-HCCCCEEEECCEEEEcchH
Confidence 799999999988 5899999999999988873
No 153
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=79.25 E-value=2.8 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.| +.+++.++++ .|+|+|.+|++...+|
T Consensus 158 Gi-~~~~i~~~~~-~Ga~~i~~g~~i~~~~ 185 (196)
T cd00564 158 GI-TPENAAEVLA-AGADGVAVISAITGAD 185 (196)
T ss_pred CC-CHHHHHHHHH-cCCCEEEEehHhhcCC
Confidence 57 5789988885 8999999999987653
No 154
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=78.66 E-value=1.4 Score=33.70 Aligned_cols=29 Identities=21% Similarity=0.062 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
|.+.|..|+.+.+ ..|+|.|-|||++|--
T Consensus 281 Ggl~t~~dv~kal-aLGAD~v~igt~~liA 309 (368)
T PF01645_consen 281 GGLRTGDDVAKAL-ALGADAVYIGTAALIA 309 (368)
T ss_dssp SS--SHHHHHHHH-HCT-SEEE-SHHHHHH
T ss_pred CCccCHHHHHHHH-hcCCCeeEecchhhhh
Confidence 3799999999999 5999999999999853
No 155
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=77.95 E-value=2.3 Score=30.72 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=26.1
Q ss_pred CCC--CHHHHHHHHH---hcCCCeeeeecccccCCC
Q psy4403 9 EIV--DYGGILKFKA---DTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~--s~~d~~~~~~---~tg~dgvMigRgAl~nP~ 39 (101)
.|. +.+++.++.+ +.|++|+.++|.++..|.
T Consensus 204 Gi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~ 239 (267)
T PRK07226 204 GPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED 239 (267)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC
Confidence 688 8999988873 589999999999987654
No 156
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=77.89 E-value=2.4 Score=30.69 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
.|.|++++.++. +.|||||.+|.+.+
T Consensus 206 GI~~~e~~~~~~-~~GADgvVvGSaiv 231 (256)
T TIGR00262 206 GISKPEQVKQAI-DAGADGVIVGSAIV 231 (256)
T ss_pred CCCCHHHHHHHH-HcCCCEEEECHHHH
Confidence 699999999876 58999999999875
No 157
>PTZ00300 pyruvate kinase; Provisional
Probab=77.66 E-value=1.7 Score=34.20 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=11.6
Q ss_pred cCCCeeeeeccccc
Q psy4403 23 TNASSVMIARAAQD 36 (101)
Q Consensus 23 tg~dgvMigRgAl~ 36 (101)
.++||+|||||=|+
T Consensus 209 ~~~DgImVaRGDLg 222 (454)
T PTZ00300 209 EESDGIMVARGDLG 222 (454)
T ss_pred HhCCEEEEecchhh
Confidence 46899999999664
No 158
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=77.24 E-value=3 Score=28.37 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.| +++++.++. ++|+|++.+|++....|.
T Consensus 173 GI-~~env~~l~-~~gad~iivgsai~~~~d 201 (210)
T TIGR01163 173 GV-NDDNARELA-EAGADILVAGSAIFGADD 201 (210)
T ss_pred Cc-CHHHHHHHH-HcCCCEEEEChHHhCCCC
Confidence 57 579998888 799999999998876553
No 159
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=77.08 E-value=1.9 Score=30.56 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.|+|.+|++++++ .||+-|.||-.++.| .++.+
T Consensus 86 Gir~~edv~~~l~-~Ga~~viigt~~~~~-~~~~~ 118 (233)
T cd04723 86 GIRSLENAQEWLK-RGASRVIVGTETLPS-DDDED 118 (233)
T ss_pred CcCCHHHHHHHHH-cCCCeEEEcceeccc-hHHHH
Confidence 6999999999996 899999999999998 66554
No 160
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=77.01 E-value=1.1 Score=33.85 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=11.3
Q ss_pred CCeeeeecccccC
Q psy4403 25 ASSVMIARAAQDN 37 (101)
Q Consensus 25 ~dgvMigRgAl~n 37 (101)
+||||||||=|+-
T Consensus 240 sDgimiaRGDLg~ 252 (348)
T PF00224_consen 240 SDGIMIARGDLGV 252 (348)
T ss_dssp SSEEEEEHHHHHH
T ss_pred cCeEEEecCCcce
Confidence 5999999998874
No 161
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=75.95 E-value=2.5 Score=30.43 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
.|.. +++.++++.-.+||+.+|++.|. |--|
T Consensus 207 SV~~-~N~~~l~~~~~vDG~LVG~Asl~-~~~f 237 (242)
T cd00311 207 SVNP-ENAAELLAQPDIDGVLVGGASLK-AESF 237 (242)
T ss_pred CCCH-HHHHHHhcCCCCCEEEeehHhhC-HHHH
Confidence 5555 99999999888999999999993 4443
No 162
>PRK09206 pyruvate kinase; Provisional
Probab=75.91 E-value=2.4 Score=33.56 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=14.0
Q ss_pred HHHHHHhcCCCeeeeecccccC
Q psy4403 16 ILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 16 ~~~~~~~tg~dgvMigRgAl~n 37 (101)
+.++++. +||+|||||=|+-
T Consensus 230 ldeIl~~--~DgImVaRGDLgv 249 (470)
T PRK09206 230 FDEILEA--SDGIMVARGDLGV 249 (470)
T ss_pred HHHHHHh--CCEEEECcchhhh
Confidence 3344443 8999999997753
No 163
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=75.89 E-value=2 Score=32.71 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=26.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++|-| .|.+..|+.+.+. .|+|.||+|.-.-+
T Consensus 216 iIADG---Gi~~sGDI~KAla-aGAd~VMlGsllAG 247 (346)
T PRK05096 216 IVSDG---GCTVPGDVAKAFG-GGADFVMLGGMLAG 247 (346)
T ss_pred EEecC---CcccccHHHHHHH-cCCCEEEeChhhcC
Confidence 35777 6999999999995 89999999975444
No 164
>PLN02623 pyruvate kinase
Probab=75.65 E-value=2.2 Score=34.64 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCCeeeeeccccc
Q psy4403 14 GGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 14 ~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+.+.++++ |+||+|||||=|+
T Consensus 333 eNldeIl~--g~DgImIgrgDLg 353 (581)
T PLN02623 333 PNLHSIIT--ASDGAMVARGDLG 353 (581)
T ss_pred HhHHHHHH--hCCEEEECcchhh
Confidence 34445555 8999999999554
No 165
>PLN02561 triosephosphate isomerase
Probab=74.96 E-value=2.4 Score=30.83 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.+++.+.++...-++||+.||+++|. |. |.+
T Consensus 213 V~~~N~~~l~~~~~iDG~LVG~ASL~-~~-F~~ 243 (253)
T PLN02561 213 VTGANCKELAAQPDVDGFLVGGASLK-PE-FID 243 (253)
T ss_pred cCHHHHHHHhcCCCCCeEEEehHhhH-HH-HHH
Confidence 46677778888899999999999998 65 765
No 166
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=74.56 E-value=3.8 Score=30.09 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
.|-+++|+.+.+| .|||||+++-|..
T Consensus 197 GIgt~sDa~~AmE-lGaDgVL~nSaIa 222 (267)
T CHL00162 197 GIGTPSEASQAME-LGASGVLLNTAVA 222 (267)
T ss_pred CcCCHHHHHHHHH-cCCCEEeecceee
Confidence 4999999999995 8999999998876
No 167
>PLN02591 tryptophan synthase
Probab=74.40 E-value=2.7 Score=30.44 Aligned_cols=27 Identities=15% Similarity=0.088 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.+++|++++. ..|||||.+|-+.+.
T Consensus 197 GI~~~e~v~~~~-~~GADGvIVGSalVk 223 (250)
T PLN02591 197 GISKPEHAKQIA-GWGADGVIVGSAMVK 223 (250)
T ss_pred CCCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence 399999999866 689999999998873
No 168
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=74.25 E-value=2.6 Score=29.54 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=22.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
++-| -|+|++++.++++ .||.+|.+|- |+-.|.
T Consensus 148 IaEG---ri~tpe~a~~al~-~GA~aVVVGs-AITrP~ 180 (192)
T PF04131_consen 148 IAEG---RIHTPEQAAKALE-LGAHAVVVGS-AITRPQ 180 (192)
T ss_dssp EEES---S--SHHHHHHHHH-TT-SEEEE-H-HHH-HH
T ss_pred eecC---CCCCHHHHHHHHh-cCCeEEEECc-ccCCHH
Confidence 4556 8999999999995 8999999994 444554
No 169
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=74.11 E-value=5.7 Score=31.96 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=27.0
Q ss_pred CCCCH-----------HHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 9 EIVDY-----------GGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 9 DI~s~-----------~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
.|+|. ++++++++ .|||-|.|+-.|+.||--|
T Consensus 322 GIr~~~d~~~~~~~~~e~~~~~l~-~GadkV~i~s~Av~~~~~~ 364 (538)
T PLN02617 322 GIRDFTDANGRYYSSLEVASEYFR-SGADKISIGSDAVYAAEEY 364 (538)
T ss_pred CccccccccccccchHHHHHHHHH-cCCCEEEEChHHHhChhhh
Confidence 69997 55888884 9999999999999998443
No 170
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=73.72 E-value=5.1 Score=27.38 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.| +++++.+++ +.|+|+|.+||+....
T Consensus 166 GI-~~~n~~~~~-~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 166 GI-NLDTIPDVI-KLGPDIVIVGGAITKA 192 (206)
T ss_pred Cc-CHHHHHHHH-HcCCCEEEEeehhcCC
Confidence 57 889998888 5899999999986543
No 171
>KOG0134|consensus
Probab=73.65 E-value=2.8 Score=32.57 Aligned_cols=36 Identities=6% Similarity=-0.102 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
-.++++++.+..+.-.+|+|=.||-.++||.|-.++
T Consensus 326 ~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl 361 (400)
T KOG0134|consen 326 GGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPKRL 361 (400)
T ss_pred CccCHHHHHHHHhcCCceeEEecchhccCCchhHHH
Confidence 699999999999988899999999999999998775
No 172
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=73.50 E-value=3.6 Score=28.28 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.|.. +++.++.+ .|+|+|-+|++...+|.
T Consensus 178 GI~~-~nv~~l~~-~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 178 GINA-DNIKECAE-AGADVFVAGSAVFGAPD 206 (220)
T ss_pred CCCH-HHHHHHHH-cCCCEEEEChhhhCCCC
Confidence 4766 89988876 89999999999876554
No 173
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=73.07 E-value=4.3 Score=30.03 Aligned_cols=27 Identities=11% Similarity=0.003 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..+++++.++.++||||.+-++=|-..
T Consensus 155 yT~peeA~~Fv~~TgvD~LAvaiGt~H 181 (285)
T PRK07709 155 YADPAECKHLVEATGIDCLAPALGSVH 181 (285)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeecccc
Confidence 689999999999999998888766544
No 174
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=72.92 E-value=3.8 Score=29.18 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.+++++.++.+ .|+|+|.+|.+.+.
T Consensus 193 GI~~~e~i~~~~~-~gaD~vvvGSai~~ 219 (244)
T PRK13125 193 GLDSPEDARDALS-AGADGVVVGTAFIE 219 (244)
T ss_pred CcCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 6999999998874 89999999998774
No 175
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=72.88 E-value=5.2 Score=28.01 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=21.7
Q ss_pred CCCHHH----HHHHHHhcCCCeeeeecccccCC
Q psy4403 10 IVDYGG----ILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 10 I~s~~d----~~~~~~~tg~dgvMigRgAl~nP 38 (101)
+.|.+| +.+++ +.|++||.+||.++..|
T Consensus 190 ~~~~~~~l~~~~~~~-~~Ga~gv~vg~~i~~~~ 221 (235)
T cd00958 190 KDSEEEFLKMVYDAM-EAGAAGVAVGRNIFQRP 221 (235)
T ss_pred CCCHHHHHHHHHHHH-HcCCcEEEechhhhcCC
Confidence 467766 55556 49999999999998665
No 176
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=72.56 E-value=2.3 Score=32.29 Aligned_cols=26 Identities=23% Similarity=0.023 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
.|++..|+.+.+ .-|++.|.|||..|
T Consensus 288 Gir~g~Dv~kal-aLGA~~v~igr~~l 313 (356)
T PF01070_consen 288 GIRRGLDVAKAL-ALGADAVGIGRPFL 313 (356)
T ss_dssp S--SHHHHHHHH-HTT-SEEEESHHHH
T ss_pred CCCCHHHHHHHH-HcCCCeEEEccHHH
Confidence 799999999999 48999999999655
No 177
>PRK06247 pyruvate kinase; Provisional
Probab=72.30 E-value=3.3 Score=32.85 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=11.0
Q ss_pred CCeeeeecccccC
Q psy4403 25 ASSVMIARAAQDN 37 (101)
Q Consensus 25 ~dgvMigRgAl~n 37 (101)
+||+|||||=|+-
T Consensus 234 ~DgImVaRGDLgv 246 (476)
T PRK06247 234 SDAIMVARGDLGV 246 (476)
T ss_pred cCEEEEccchhcc
Confidence 8999999997653
No 178
>PRK06354 pyruvate kinase; Provisional
Probab=72.06 E-value=14 Score=30.16 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=33.3
Q ss_pred CCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHhhhCC
Q psy4403 25 ASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGS 81 (101)
Q Consensus 25 ~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~l~~~~~~ 81 (101)
+||+|||||=|+-=.=+. ....+.++.++.|.+...+.--.-++|-.|..+
T Consensus 243 ~DgImVaRGDLgve~g~e------~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~ 293 (590)
T PRK06354 243 CDGLMVARGDLGVEIPAE------EVPLLQKRLIKKANRLGKPVITATQMLDSMQRN 293 (590)
T ss_pred cCEEEEccchhhcccCcH------HHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhC
Confidence 899999999776321111 122466777777877776655556777777754
No 179
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=71.99 E-value=3.5 Score=27.90 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.| +.+++.+++ .+|++||.++++....
T Consensus 160 GI-~~~~~~~~~-~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 160 GI-TLENAAEVL-AAGADGVAVVSAIMQA 186 (196)
T ss_pred Cc-CHHHHHHHH-HcCCCEEEEhHHhhCC
Confidence 57 689998888 6899999999998754
No 180
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=71.92 E-value=3.7 Score=29.96 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=24.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhc-CCCeeeeecccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADT-NASSVMIARAAQ 35 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~t-g~dgvMigRgAl 35 (101)
+|.| .|.|.+|+.++.+.. |+.++.+|+++.
T Consensus 205 IASG---Gv~s~eDi~~l~~~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 205 TYAG---GAKSIDDLDLVDELSKGKVDLTIGSALD 236 (253)
T ss_pred EEEC---CCCCHHHHHHHHHhcCCCCcEEeeehHH
Confidence 4566 799999999986543 788899999863
No 181
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=71.85 E-value=3.8 Score=29.21 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
.|...||.+.+.. .||+||.+|++.
T Consensus 189 GV~g~Edlel~~~-~Gv~gvLvaTal 213 (229)
T COG1411 189 GVGGMEDLELLLG-MGVSGVLVATAL 213 (229)
T ss_pred CcCcHHHHHHHhc-CCCceeeehhhh
Confidence 6999999988886 999999999975
No 182
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=71.59 E-value=4.5 Score=29.03 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=24.1
Q ss_pred CCC--CHHHHHHHHH---hcCCCeeeeecccccCCC
Q psy4403 9 EIV--DYGGILKFKA---DTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~--s~~d~~~~~~---~tg~dgvMigRgAl~nP~ 39 (101)
.|. |.+++.+..+ +.|++|+.++|.++..|.
T Consensus 200 Gi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d 235 (258)
T TIGR01949 200 GPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD 235 (258)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC
Confidence 688 7777766664 689999999999886553
No 183
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=71.27 E-value=3.4 Score=32.78 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=9.8
Q ss_pred Ceeeeeccccc
Q psy4403 26 SSVMIARAAQD 36 (101)
Q Consensus 26 dgvMigRgAl~ 36 (101)
||||+|||=|+
T Consensus 241 DGIMVARGDLG 251 (477)
T COG0469 241 DGIMVARGDLG 251 (477)
T ss_pred CceEEEecccc
Confidence 89999999765
No 184
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=70.73 E-value=4.8 Score=29.74 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
..+++++.++.++||||.+-++=|-..=
T Consensus 154 ~T~peeA~~Fv~~TgvD~LAvaiGt~HG 181 (284)
T PRK12737 154 YTNPDAAAEFVERTGIDSLAVAIGTAHG 181 (284)
T ss_pred CCCHHHHHHHHHHhCCCEEeeccCcccc
Confidence 6799999999999999988887766543
No 185
>PTZ00333 triosephosphate isomerase; Provisional
Probab=70.51 E-value=4.6 Score=29.39 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.+++.+.++...-++||++|||+++. |. |.+
T Consensus 216 V~~~N~~~l~~~~~vDG~LvG~asl~-~~-f~~ 246 (255)
T PTZ00333 216 VNEKNCKELIKQPDIDGFLVGGASLK-PD-FVD 246 (255)
T ss_pred CCHHHHHHHhcCCCCCEEEEehHhhh-hh-HHH
Confidence 46677778888899999999999996 53 654
No 186
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=69.67 E-value=5.5 Score=29.51 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..++++++++.++||||.+-++=|-..
T Consensus 155 yT~peea~~Fv~~TgvD~LAvaiGt~H 181 (286)
T PRK08610 155 YADPKECQELVEKTGIDALAPALGSVH 181 (286)
T ss_pred cCCHHHHHHHHHHHCCCEEEeeccccc
Confidence 589999999999999998888776554
No 187
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=69.65 E-value=4.5 Score=32.54 Aligned_cols=45 Identities=27% Similarity=0.158 Sum_probs=32.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHH
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLR 59 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~ 59 (101)
+|.| .+-+++|+.++++++++|+++.| +||.. +..+..+ +++||.
T Consensus 486 iasG---G~g~~~d~~~~~~~~~~~a~~aa-------~~fh~--~~~~~~~-~k~~l~ 530 (538)
T PLN02617 486 IASS---GAGTPEHFSDVFSKTNASAALAA-------GIFHR--KEVPISS-VKEHLL 530 (538)
T ss_pred EEEC---CCCCHHHHHHHHhcCCccEEEEE-------eeecc--CCCCHHH-HHHHHH
Confidence 5566 79999999999999999999988 66664 2344333 444443
No 188
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=67.67 E-value=5.9 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..++++++++.++||||.+-++=|-..
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~H 180 (284)
T PRK09195 154 YTDPAQAREFVEATGIDSLAVAIGTAH 180 (284)
T ss_pred CCCHHHHHHHHHHHCcCEEeeccCccc
Confidence 679999999999999998888766543
No 189
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=67.56 E-value=5.7 Score=27.06 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.| +.+++.++++ .|+++|.+|++...
T Consensus 168 GI-~~~~i~~~~~-~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 168 GI-TPENAPEVLE-AGADGVAVVSAITG 193 (212)
T ss_pred Cc-CHHHHHHHHH-cCCCEEEEeHHhhc
Confidence 57 7899988875 89999999988654
No 190
>PRK14565 triosephosphate isomerase; Provisional
Probab=66.95 E-value=6 Score=28.55 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
.+++.+..+++.-++||+.||++.+ +|.-|
T Consensus 198 V~~~N~~~l~~~~~iDG~LvG~asl-~~~~f 227 (237)
T PRK14565 198 VNQENIRDLKSINQLSGVLVGSASL-DVDSF 227 (237)
T ss_pred cCHhhHHHHhcCCCCCEEEEechhh-cHHHH
Confidence 4677778888888999999999998 44444
No 191
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=66.87 E-value=4.9 Score=31.87 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCCeeeeeccccc
Q psy4403 14 GGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 14 ~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+.+.++.+. +||+|||||=|+
T Consensus 229 ~nldeI~~~--~DgImIargDLg 249 (480)
T cd00288 229 NNFDEILEA--SDGIMVARGDLG 249 (480)
T ss_pred HhHHHHHHh--cCEEEECcchhh
Confidence 334444444 899999999554
No 192
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=66.66 E-value=3.1 Score=30.00 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.+++.+.++...-++||++||+++|.
T Consensus 211 V~~~N~~~l~~~~~iDG~LVG~asl~ 236 (244)
T PF00121_consen 211 VNPENAAELLSQPDIDGVLVGGASLK 236 (244)
T ss_dssp ESTTTHHHHHTSTT-SEEEESGGGGS
T ss_pred CCcccHHHHhcCCCCCEEEEchhhhc
Confidence 35667778888899999999999874
No 193
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=66.29 E-value=6.6 Score=29.01 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
..+++++.++.++||||.+-++=|-.
T Consensus 154 ~T~pe~a~~Fv~~TgvD~LAvaiGt~ 179 (284)
T PRK12857 154 MTDPEEARRFVEETGVDALAIAIGTA 179 (284)
T ss_pred cCCHHHHHHHHHHHCCCEEeeccCcc
Confidence 67999999999999999888876654
No 194
>PRK05826 pyruvate kinase; Provisional
Probab=66.02 E-value=5.3 Score=31.56 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCCeeeeeccccc
Q psy4403 15 GILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 15 d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.+.++.+. +||+|||||=|+
T Consensus 230 nldeI~~~--~DgImIgrgDLg 249 (465)
T PRK05826 230 NIDEIIEA--SDGIMVARGDLG 249 (465)
T ss_pred hHHHHHHH--cCEEEECcchhh
Confidence 34444444 899999999554
No 195
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=65.90 E-value=6.2 Score=26.33 Aligned_cols=18 Identities=6% Similarity=0.023 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCCeeee
Q psy4403 13 YGGILKFKADTNASSVMI 30 (101)
Q Consensus 13 ~~d~~~~~~~tg~dgvMi 30 (101)
+-.+++++++-|||+||.
T Consensus 45 pvaakrLieeeGCd~Vi~ 62 (154)
T COG1731 45 PVAAKRLIEEEGCDIVIA 62 (154)
T ss_pred hHHHHHHHHhcCCcEEEE
Confidence 557889999999999983
No 196
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=65.80 E-value=5.7 Score=28.99 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDY 64 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~ 64 (101)
|.++++++++. .++|||.||-..+.- ..+ ......+.+.++.+++.+.
T Consensus 207 I~~~e~~~~~~--~~aDGvIVGSa~v~~---i~~--~~~~~~~~~~~~~~~~~~l 254 (259)
T PF00290_consen 207 ISTPEQAKKLA--AGADGVIVGSAFVKI---IEE--NGDDAEKFLKELKEFVREL 254 (259)
T ss_dssp S-SHHHHHHHH--TTSSEEEESHHHHHH---HHH--TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH--ccCCEEEECHHHHHH---HHH--ccccHHHHHHHHHHHHHHH
Confidence 99999999988 899999999887642 111 1112345566665555443
No 197
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=64.10 E-value=8.5 Score=27.88 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
.+++.+.++...-++||+.||++++ +|.=|
T Consensus 212 V~~~N~~~l~~~~~vDG~LVG~Asl-~~~~f 241 (250)
T PRK00042 212 VKPDNAAELMAQPDIDGALVGGASL-KAEDF 241 (250)
T ss_pred CCHHHHHHHhcCCCCCEEEEeeeee-chHHH
Confidence 4667777888889999999999998 44333
No 198
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=62.61 E-value=5.9 Score=21.09 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=15.0
Q ss_pred hHHHHHHHhcCChhhhC
Q psy4403 85 SPLGKKFLESQTLEQIW 101 (101)
Q Consensus 85 ~~~~~~i~~~~~~~e~~ 101 (101)
..|+.++..|++.++++
T Consensus 17 ~~l~~~l~~~~~~~e~~ 33 (49)
T PF07862_consen 17 PELREQLKACQNPEEVV 33 (49)
T ss_pred HHHHHHHHhcCCHHHHH
Confidence 89999999999998863
No 199
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=62.58 E-value=8.2 Score=28.14 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.++++++++. ..|+|||.+|-+.+.
T Consensus 210 GI~~~e~~~~~~-~~GADGvVVGSalv~ 236 (263)
T CHL00200 210 GISTSEQIKQIK-GWNINGIVIGSACVQ 236 (263)
T ss_pred CcCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence 599999999866 589999999998865
No 200
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=61.64 E-value=9.8 Score=26.78 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
.+++.+.++..+-++||+.+|++.|
T Consensus 178 V~~~N~~~l~~~~~iDG~LvG~Asl 202 (205)
T TIGR00419 178 ISTGEDAELAAQLGAEGVLLASGSL 202 (205)
T ss_pred CCHHHHHHHhcCCCCCEEEEeeeee
Confidence 4566777888899999999999988
No 201
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=61.30 E-value=13 Score=25.15 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.| +++++.++++ .|+|+|-+|++....
T Consensus 166 GI-~~~~i~~~~~-~Gad~vvvGsai~~~ 192 (202)
T cd04726 166 GI-TPDTLPEFKK-AGADIVIVGRAITGA 192 (202)
T ss_pred Cc-CHHHHHHHHh-cCCCEEEEeehhcCC
Confidence 57 5999988885 799999999987543
No 202
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=61.13 E-value=8.2 Score=29.44 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
..+++++.++.++||||.+-++=|-..=..-
T Consensus 170 ~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk 200 (347)
T TIGR01521 170 LTDPEEAADFVKKTKVDALAVAIGTSHGAYK 200 (347)
T ss_pred CCCHHHHHHHHHHHCcCEEehhcccccCCcC
Confidence 6799999999999999988888766654443
No 203
>KOG4201|consensus
Probab=60.82 E-value=9.4 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
|+|++|+.... .-|+.+|++|..++.
T Consensus 246 i~tpdDia~~q-~~GV~avLVGEslmk 271 (289)
T KOG4201|consen 246 IFTPDDIAKYQ-KAGVKAVLVGESLMK 271 (289)
T ss_pred CCCHHHHHHHH-HcCceEEEecHHHHh
Confidence 99999997776 589999999998875
No 204
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=60.48 E-value=11 Score=28.57 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
.|-+++|+.+.+| .|||||++.-|..
T Consensus 257 GIg~~sda~~Ame-lGadgVL~nSaIa 282 (326)
T PRK11840 257 GVGTASDAAVAME-LGCDGVLMNTAIA 282 (326)
T ss_pred CCCCHHHHHHHHH-cCCCEEEEcceec
Confidence 4999999999995 8999999998875
No 205
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=60.40 E-value=9.9 Score=28.15 Aligned_cols=26 Identities=19% Similarity=0.043 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
..++++++++.++||||.+-++=|-.
T Consensus 157 ~T~peea~~Fv~~TgvD~LAvaiGt~ 182 (288)
T TIGR00167 157 YTDPEEAKEFVKLTGVDSLAAAIGNV 182 (288)
T ss_pred CCCHHHHHHHHhccCCcEEeeccCcc
Confidence 67999999999999999888877643
No 206
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=60.27 E-value=11 Score=27.90 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..+++++.++.++||||.+=++=|-..
T Consensus 154 ~TdP~~a~~Fv~~TgvD~LAvaiGt~H 180 (287)
T PF01116_consen 154 YTDPEEAKEFVEETGVDALAVAIGTAH 180 (287)
T ss_dssp SSSHHHHHHHHHHHTTSEEEE-SSSBS
T ss_pred ccCHHHHHHHHHHhCCCEEEEecCccc
Confidence 578999999999999998777766443
No 207
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=60.11 E-value=10 Score=27.92 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
..++++++++.++||||.+-++=|-.
T Consensus 147 ~T~pe~a~~Fv~~TgvD~LAvsiGt~ 172 (276)
T cd00947 147 LTDPEEAEEFVEETGVDALAVAIGTS 172 (276)
T ss_pred CCCHHHHHHHHHHHCCCEEEeccCcc
Confidence 67899999999999999888877766
No 208
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=59.73 E-value=11 Score=28.56 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
..+++++.++.++||||.+-++=|-..=..-+
T Consensus 163 ~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~ 194 (321)
T PRK07084 163 YTQPEEVEDFVKKTGVDSLAISIGTSHGAYKF 194 (321)
T ss_pred cCCHHHHHHHHHHhCCCEEeeccccccccccC
Confidence 67899999999999999998887776655543
No 209
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=59.63 E-value=9.5 Score=25.80 Aligned_cols=29 Identities=14% Similarity=0.068 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.|. .+++.++. ..|+|+|.+|++....+.
T Consensus 174 GI~-~env~~~~-~~gad~iivgsai~~~~~ 202 (211)
T cd00429 174 GIN-LETIPLLA-EAGADVLVAGSALFGSDD 202 (211)
T ss_pred CCC-HHHHHHHH-HcCCCEEEECHHHhCCCC
Confidence 577 48888877 699999999999876554
No 210
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.78 E-value=9.5 Score=28.06 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
|.++++++++.+. +|||.+|-+...
T Consensus 214 Is~~e~~~~v~~~--ADGVIVGSAiV~ 238 (265)
T COG0159 214 ISSPEQAAQVAEA--ADGVIVGSAIVK 238 (265)
T ss_pred cCCHHHHHHHHHh--CCeEEEcHHHHH
Confidence 9999999999987 999999987653
No 211
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=58.66 E-value=11 Score=27.90 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
..+++++.++.++||||.+=++=|-..=
T Consensus 152 ~T~peea~~Fv~~TgvD~LAvaiGt~HG 179 (282)
T TIGR01858 152 YTDPQEAKEFVEATGVDSLAVAIGTAHG 179 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEecccCcccc
Confidence 7899999999999999987777665443
No 212
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=58.27 E-value=50 Score=23.92 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYD 65 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~ 65 (101)
.++-++.+...+.||+||||=.+.=....+|.- .+ .+.+.+|++.+.++.
T Consensus 131 ~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~----~~-~~~L~~Fv~~ar~~g 180 (235)
T PF04476_consen 131 ISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDH----LS-EEELAEFVAQARAHG 180 (235)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccCCCCchhhc----CC-HHHHHHHHHHHHHcc
Confidence 367788888999999999998887777778775 23 356777888777665
No 213
>PLN02334 ribulose-phosphate 3-epimerase
Probab=58.08 E-value=13 Score=26.09 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.| +.+++..+. +.|+|+|.+|+++...|
T Consensus 182 GI-~~e~i~~l~-~aGad~vvvgsai~~~~ 209 (229)
T PLN02334 182 GV-GPSTIDKAA-EAGANVIVAGSAVFGAP 209 (229)
T ss_pred CC-CHHHHHHHH-HcCCCEEEEChHHhCCC
Confidence 45 789998887 69999999998866544
No 214
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=57.88 E-value=12 Score=27.69 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..+++++.++.++||||.+=++=|-..
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~H 180 (286)
T PRK12738 154 LTDPQEAKRFVELTGVDSLAVAIGTAH 180 (286)
T ss_pred CCCHHHHHHHHHHhCCCEEEeccCccc
Confidence 679999999999999998777766443
No 215
>PRK14566 triosephosphate isomerase; Provisional
Probab=57.25 E-value=11 Score=27.63 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
=.+++.+.+++..-.+||++|||+.|.
T Consensus 220 SV~~~N~~~l~~~~dIDG~LVGgASL~ 246 (260)
T PRK14566 220 SVTPSNAADLFAQPDVDGGLIGGASLN 246 (260)
T ss_pred CCCHhHHHHHhcCCCCCeEEechHhcC
Confidence 456788888888888999999998873
No 216
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=57.07 E-value=12 Score=26.84 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=22.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeec
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigR 32 (101)
+|-| .+.|++.+++.++ .||++|-+|-
T Consensus 184 IAEG---r~~tP~~Ak~a~~-~Ga~aVvVGs 210 (229)
T COG3010 184 IAEG---RYNTPEQAKKAIE-IGADAVVVGS 210 (229)
T ss_pred EeeC---CCCCHHHHHHHHH-hCCeEEEECc
Confidence 4566 8999999999985 8999998884
No 217
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=56.63 E-value=9.4 Score=29.12 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
..+++++.++.++||||.+-|+=|-..=..
T Consensus 172 ~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Y 201 (347)
T PRK13399 172 LTDPDQAVDFVQRTGVDALAIAIGTSHGAY 201 (347)
T ss_pred CCCHHHHHHHHHHHCcCEEhhhhccccCCc
Confidence 678999999999999998888776655443
No 218
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=56.56 E-value=13 Score=29.64 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
|.|.|+++++.+.+ .|+|+|.+|.|-
T Consensus 290 GnV~t~e~a~~li~-aGAd~I~vg~g~ 315 (502)
T PRK07107 290 GNVVDREGFRYLAE-AGADFVKVGIGG 315 (502)
T ss_pred ccccCHHHHHHHHH-cCCCEEEECCCC
Confidence 48999999999985 899999997764
No 219
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=56.40 E-value=14 Score=27.78 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
..+++++.++.++||||.+=++=|-..=..
T Consensus 154 ~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Y 183 (307)
T PRK05835 154 LVNPKEAEQFVKESQVDYLAPAIGTSHGAF 183 (307)
T ss_pred CCCHHHHHHHHHhhCCCEEEEccCcccccc
Confidence 678999999999999998888777665433
No 220
>PRK15492 triosephosphate isomerase; Provisional
Probab=56.17 E-value=12 Score=27.32 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
.+++.+..++..-.+||++|||+.|
T Consensus 221 V~~~N~~~l~~~~diDG~LvG~aSl 245 (260)
T PRK15492 221 VNAENANELFGQPHIDGLFIGRSAW 245 (260)
T ss_pred cCHHHHHHHhcCCCCCEEEeehhhc
Confidence 4667777777777888888888776
No 221
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.75 E-value=12 Score=27.16 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.+++|+.++.+ .||||.+|-+.+.
T Consensus 208 GI~~~e~v~~~~~--~ADGviVGSaiv~ 233 (258)
T PRK13111 208 GISTPEQAAAIAA--VADGVIVGSALVK 233 (258)
T ss_pred ccCCHHHHHHHHH--hCCEEEEcHHHHH
Confidence 5999999999996 3999999998763
No 222
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=55.64 E-value=21 Score=24.54 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=22.8
Q ss_pred CCCCCCCCCHHHHHHHHH-hcCCCeeeeeccccc--CCCcc
Q psy4403 4 SGGSKEIVDYGGILKFKA-DTNASSVMIARAAQD--NCSIF 41 (101)
Q Consensus 4 NGgsGDI~s~~d~~~~~~-~tg~dgvMigRgAl~--nP~iF 41 (101)
||.++-|.+.++-....+ ...+|+||+||+.+. ||.+-
T Consensus 21 ~g~~~wi~~~~~~~~~~~lr~~~DailvG~~T~~~d~p~l~ 61 (216)
T TIGR00227 21 SGESSWITSEEARRDVHQLRAQSDAILVGSGTVLADDPRLT 61 (216)
T ss_pred CCcccCcCCHHHHHHHHHHHhHcCEEEECcCeEeccCCcce
Confidence 343334555554433222 245999999999988 47653
No 223
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=54.72 E-value=9.7 Score=28.39 Aligned_cols=31 Identities=26% Similarity=0.185 Sum_probs=22.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++-| .|.+.+++..++. .|||||.+|...+.
T Consensus 194 iaAG---GI~dg~~iaaal~-lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 194 IAAG---GIADGRGIAAALA-LGADGVQMGTRFLA 224 (330)
T ss_dssp EEES---S--SHHHHHHHHH-CT-SEEEESHHHHT
T ss_pred EEec---CcCCHHHHHHHHH-cCCCEeecCCeEEe
Confidence 4445 6999999999985 79999999987654
No 224
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=54.23 E-value=12 Score=27.72 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
..+++++.++.++||||.+-++=|-
T Consensus 152 ~T~pe~a~~Fv~~TgvD~LAvaiGt 176 (283)
T PRK07998 152 KTEPEKVKDFVERTGCDMLAVSIGN 176 (283)
T ss_pred cCCHHHHHHHHHHhCcCeeehhccc
Confidence 5899999999999999987776543
No 225
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=53.93 E-value=21 Score=24.77 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=25.5
Q ss_pred cCCCCCCCCCHHHHHHHHHh-cCCCeeeeecccc--cCCCcc
Q psy4403 3 PSGGSKEIVDYGGILKFKAD-TNASSVMIARAAQ--DNCSIF 41 (101)
Q Consensus 3 aNGgsGDI~s~~d~~~~~~~-tg~dgvMigRgAl--~nP~iF 41 (101)
+||.|. |.+.+|-..+.+. .-+|+||+|-+.+ .||.+=
T Consensus 18 ~~g~~~-it~~~~r~~~h~lRa~~DaIlvG~~Tv~~D~P~L~ 58 (210)
T TIGR01508 18 INRDSR-ISCEEDLIRVHEIRAEVDAIMVGIGTVLADDPRLT 58 (210)
T ss_pred CCCCcC-cCCHHHHHHHHHHHHHCCEEEECcCeEEecCCccc
Confidence 355544 6766665555443 4599999999977 477764
No 226
>KOG0538|consensus
Probab=53.75 E-value=27 Score=26.67 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC-CCCCCH---HHHHHHHHHHHHHhcCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT-KGIQDI---HQMIKEYLRYCVDYDNS 67 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~-~~~~~~---~~~~~~~l~~~~~~~~~ 67 (101)
.|++-.|+.+.+. .|+.+|-||| |.+|.-. .|..-. -++++.-++++....++
T Consensus 286 GVR~G~DVlKALA-LGAk~VfiGR-----P~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc 342 (363)
T KOG0538|consen 286 GVRRGTDVLKALA-LGAKGVFIGR-----PIVWGLAAKGEAGVKKVLDILRDEFELTMALSGC 342 (363)
T ss_pred CcccchHHHHHHh-cccceEEecC-----chheeeccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 6999999999995 8999999998 4555431 232222 26677777777666554
No 227
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=53.70 E-value=20 Score=20.18 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=18.4
Q ss_pred HHHHhhhCCCCChHHHHHHHhcCChhhhC
Q psy4403 73 YCVQSMLGSQQESPLGKKFLESQTLEQIW 101 (101)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~i~~~~~~~e~~ 101 (101)
.++.++... .+|++++..+.+.++++
T Consensus 6 ~Fl~~~~~d---~~L~~~l~~~~~~e~~~ 31 (64)
T TIGR03798 6 AFLEKVKTD---PDLREKLKAAEDPEDRV 31 (64)
T ss_pred HHHHHHHcC---HHHHHHHHHcCCHHHHH
Confidence 344444444 88999999999988763
No 228
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=52.96 E-value=13 Score=26.94 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCCeeeeec
Q psy4403 13 YGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 13 ~~d~~~~~~~tg~dgvMigR 32 (101)
..+..+...++|.|++|||=
T Consensus 30 ~~ei~~~~~~~GTDaImIGG 49 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMIGG 49 (240)
T ss_pred cHHHHHHHHHcCCCEEEECC
Confidence 44556677789999999983
No 229
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=52.71 E-value=17 Score=27.82 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARA 33 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRg 33 (101)
|+|.|+++++++.+ .|+|+|-+|=|
T Consensus 156 GNV~T~e~a~~Li~-aGAD~ikVgiG 180 (343)
T TIGR01305 156 GNVVTGEMVEELIL-SGADIVKVGIG 180 (343)
T ss_pred ecccCHHHHHHHHH-cCCCEEEEccc
Confidence 38999999988885 89999998733
No 230
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.99 E-value=19 Score=26.44 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=23.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 7 SKEIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
||.| +++.+.++. +||+|.+.+|.-.-.=|+
T Consensus 235 sGgI-t~~ni~~ya-~~GvD~IsvG~l~~sa~~ 265 (273)
T PRK05848 235 SGNI-TLENINAYA-KSGVDAISSGSLIHQATW 265 (273)
T ss_pred ECCC-CHHHHHHHH-HcCCCEEEeChhhcCCCc
Confidence 3479 999998886 699999999875543443
No 231
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=51.10 E-value=65 Score=20.95 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=31.6
Q ss_pred CHHHHHHHHHhcCCCeeee-ec---ccccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy4403 12 DYGGILKFKADTNASSVMI-AR---AAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDY 64 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMi-gR---gAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~ 64 (101)
+++.+.+.+++++++++|| |+ |-.--|+=....++.+. .+++.+.++.|.+-
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~ 56 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHER 56 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHC
Confidence 5788899999999999999 33 33334442211111122 46667766666553
No 232
>PHA02629 A-type inclusion body protein; Provisional
Probab=51.05 E-value=16 Score=20.32 Aligned_cols=16 Identities=6% Similarity=0.046 Sum_probs=8.5
Q ss_pred cCCCCCC-CCCHHHHHH
Q psy4403 3 PSGGSKE-IVDYGGILK 18 (101)
Q Consensus 3 aNGgsGD-I~s~~d~~~ 18 (101)
+||++|+ +.|.-|+++
T Consensus 16 gng~~gngc~s~c~fer 32 (61)
T PHA02629 16 GNGNGGNGCTSSCEFER 32 (61)
T ss_pred CCCCCCCCccchhHhhH
Confidence 4555555 555555544
No 233
>PLN02429 triosephosphate isomerase
Probab=50.98 E-value=18 Score=27.33 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
.+++.+.++..+-++||+.||++.|
T Consensus 272 V~~~N~~el~~~~diDG~LVGgASL 296 (315)
T PLN02429 272 VNGGNSAELAKEEDIDGFLVGGASL 296 (315)
T ss_pred cCHHHHHHHhcCCCCCEEEeeccee
Confidence 3556666777788999999999998
No 234
>KOG2323|consensus
Probab=50.36 E-value=15 Score=29.44 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=10.8
Q ss_pred CCeeeeeccccc
Q psy4403 25 ASSVMIARAAQD 36 (101)
Q Consensus 25 ~dgvMigRgAl~ 36 (101)
.||+|+|||=|+
T Consensus 258 sDg~MvarGdlG 269 (501)
T KOG2323|consen 258 SDGIMVARGDLG 269 (501)
T ss_pred cCceEEEeCCCC
Confidence 589999999887
No 235
>KOG1371|consensus
Probab=49.34 E-value=16 Score=27.84 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=28.1
Q ss_pred cCCCCCCCCCHHHHHHHHHhcCCCeeeee------cccccCCCc
Q psy4403 3 PSGGSKEIVDYGGILKFKADTNASSVMIA------RAAQDNCSI 40 (101)
Q Consensus 3 aNGgsGDI~s~~d~~~~~~~tg~dgvMig------RgAl~nP~i 40 (101)
-+| |+.|.+..+++.++++.|+||-= |=++.||--
T Consensus 59 ~~~---Dl~D~~~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~ 99 (343)
T KOG1371|consen 59 VEG---DLNDAEALEKLFSEVKFDAVMHFAALAAVGESMENPLS 99 (343)
T ss_pred EEe---ccCCHHHHHHHHhhcCCceEEeehhhhccchhhhCchh
Confidence 456 99999999999999999999963 445566643
No 236
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=48.77 E-value=18 Score=26.53 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
+++++++++++++..++|.|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~d~v~~ 257 (316)
T cd03319 236 SCFSAADAARLAGGGAYDGINI 257 (316)
T ss_pred CCCCHHHHHHHHhcCCCCEEEE
Confidence 8999999999999999998865
No 237
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=48.74 E-value=31 Score=23.48 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=32.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+.+|.+-.|.+..+|.++.++.|.|=|.|+..+ +|-+++=
T Consensus 14 ~~dG~~lgv~~~~eAl~~A~~~~lDLVev~~~a--~PPVckI 53 (165)
T TIGR00168 14 DENGEQLGIVSREEALEIAEEAGLDLVLISPNA--KPPVCKI 53 (165)
T ss_pred CCCCcCCCcccHHHHHHHHHHcCCcEEEECCCC--CCCEEEE
Confidence 446655569999999999999999999999764 6766553
No 238
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=48.63 E-value=16 Score=27.97 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..+++++.++.++||||.+=|+=|-..
T Consensus 172 ~T~PeeA~~Fv~~TgvD~LAvaiGT~H 198 (347)
T PRK09196 172 LTDPEEAADFVKKTQVDALAIAIGTSH 198 (347)
T ss_pred CCCHHHHHHHHHHhCcCeEhhhhcccc
Confidence 678999999999999997777655443
No 239
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=48.16 E-value=24 Score=17.22 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=10.9
Q ss_pred CHHHHHHHHHhcCCCeee
Q psy4403 12 DYGGILKFKADTNASSVM 29 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvM 29 (101)
..+...+++ ..|+||||
T Consensus 9 ~~~~~~~~l-~~GVDgI~ 25 (30)
T PF13653_consen 9 KPASWRELL-DLGVDGIM 25 (30)
T ss_dssp SHHHHHHHH-HHT-SEEE
T ss_pred CHHHHHHHH-HcCCCEee
Confidence 455565555 47999998
No 240
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=47.85 E-value=26 Score=25.45 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
.|+|+|.++++.+ -|+|.+..|--+..+|.-+
T Consensus 199 GIrs~E~A~~~a~-agAD~IVtG~iiee~~~~~ 230 (240)
T COG1646 199 GIRSPEQAREMAE-AGADTIVTGTIIEEDPDKA 230 (240)
T ss_pred CcCCHHHHHHHHH-cCCCEEEECceeecCHHHH
Confidence 7999999988884 7999999998888887433
No 241
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=46.62 E-value=20 Score=27.32 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.+++.+.++....++||+.+|++.+ +|.=|.++
T Consensus 222 V~~~N~~~l~~~~~iDG~LVG~asl-~~~~f~~I 254 (355)
T PRK14905 222 VNLENANELIMKPHIDGLFIGRSAW-DAQCFHAL 254 (355)
T ss_pred CCHHHHHHHhcCCCCCEEEechhhc-cHHHHHHH
Confidence 4667777888889999999999999 67767553
No 242
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=45.55 E-value=22 Score=25.95 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.+++.+.++..+-++||+.||++.|.
T Consensus 211 V~~~N~~e~~~~~~idG~LVGgAslk 236 (251)
T COG0149 211 VKPGNAAELAAQPDIDGALVGGASLK 236 (251)
T ss_pred cChhHHHHHhcCCCCCeEEEcceeec
Confidence 35556667777899999999999886
No 243
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=44.79 E-value=25 Score=25.68 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
.|-++.|+...+| .|||+|++--+.
T Consensus 183 GiG~pSdaa~AME-lG~daVLvNTAi 207 (247)
T PF05690_consen 183 GIGTPSDAAQAME-LGADAVLVNTAI 207 (247)
T ss_dssp ---SHHHHHHHHH-TT-SEEEESHHH
T ss_pred CCCCHHHHHHHHH-cCCceeehhhHH
Confidence 3889999999995 899999986553
No 244
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=44.13 E-value=23 Score=26.77 Aligned_cols=23 Identities=4% Similarity=0.160 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeee
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIA 31 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMig 31 (101)
|+|.|+++++++. +.|||++++|
T Consensus 146 g~V~t~e~a~~l~-~aGad~i~vg 168 (326)
T PRK05458 146 GNVGTPEAVRELE-NAGADATKVG 168 (326)
T ss_pred EecCCHHHHHHHH-HcCcCEEEEC
Confidence 3899999997777 5899999977
No 245
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=44.08 E-value=28 Score=27.82 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeee
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIA 31 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMig 31 (101)
|+|.|+++++++.+ .|||+|-+|
T Consensus 295 g~v~t~e~a~~a~~-aGaD~i~vg 317 (505)
T PLN02274 295 GNVVTMYQAQNLIQ-AGVDGLRVG 317 (505)
T ss_pred ecCCCHHHHHHHHH-cCcCEEEEC
Confidence 38999999998885 999999775
No 246
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=43.48 E-value=27 Score=24.84 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
.+.+++.+..+++|+|++|||=-.
T Consensus 12 ~~~~~~~~~~~~~gtdai~vGGS~ 35 (219)
T cd02812 12 LVDEEIAKLAEESGTDAIMVGGSD 35 (219)
T ss_pred CCHHHHHHHHHhcCCCEEEECCcc
Confidence 456778888888999999998443
No 247
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=41.44 E-value=25 Score=25.06 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
.|.+.+++.++.+. +|||.+|-+..
T Consensus 195 GI~~~e~~~~~~~~--ADgvVvGSaiv 219 (242)
T cd04724 195 GISTPEQAAEVAKY--ADGVIVGSALV 219 (242)
T ss_pred cCCCHHHHHHHHcc--CCEEEECHHHH
Confidence 69999999998865 99999996544
No 248
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=41.01 E-value=44 Score=25.54 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=26.4
Q ss_pred cCCCCCCCCCHHHHHHHHHh-cCCCeeeeecccc--cCCCcc
Q psy4403 3 PSGGSKEIVDYGGILKFKAD-TNASSVMIARAAQ--DNCSIF 41 (101)
Q Consensus 3 aNGgsGDI~s~~d~~~~~~~-tg~dgvMigRgAl--~nP~iF 41 (101)
++|-|. |.+.++-....+. .-+|+||+|.|.+ .||.+=
T Consensus 157 ~~G~s~-IT~~~ar~~vh~lRa~~DAILVG~~Tv~~DnP~Lt 197 (360)
T PRK14719 157 IENDSR-ISGENDLKRVHEIRKDVDAIMVGIGTVLKDDPRLT 197 (360)
T ss_pred CCCCCC-cCCHHHHHHHHHHHHHCCEEEECcchHhhcCCCCc
Confidence 355565 7877766555553 5699999999976 567654
No 249
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=39.43 E-value=34 Score=26.24 Aligned_cols=27 Identities=4% Similarity=-0.087 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHhcCC----Ceeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNA----SSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~----dgvMigRgAl~ 36 (101)
..++++++++.++||| |.+-|+=|-..
T Consensus 187 ~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~H 217 (350)
T PRK09197 187 YTQPEDVLYAYEALGKISGRFTIAASFGNVH 217 (350)
T ss_pred cCCHHHHHHHHHHhCCCCcceEEeeeccccc
Confidence 6899999999999998 87777766543
No 250
>PRK08185 hypothetical protein; Provisional
Probab=39.20 E-value=37 Score=25.10 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
..+++++.++.+.||||.+=++=|-.+-..
T Consensus 148 ~t~peea~~f~~~TgvD~LAvaiGt~HG~y 177 (283)
T PRK08185 148 YTDPEQAEDFVSRTGVDTLAVAIGTAHGIY 177 (283)
T ss_pred CCCHHHHHHHHHhhCCCEEEeccCcccCCc
Confidence 669999999999999998888655554433
No 251
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=39.17 E-value=29 Score=24.63 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHhcCCC
Q psy4403 7 SKEIVDYGGILKFKADTNAS 26 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~tg~d 26 (101)
+|.|.|++|+.++++ -||+
T Consensus 185 sGGIrt~~~a~~~i~-aGA~ 203 (221)
T PRK00507 185 SGGIRTLEDALAMIE-AGAT 203 (221)
T ss_pred eCCcCCHHHHHHHHH-cCcc
Confidence 448999999999995 5776
No 252
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.34 E-value=42 Score=24.86 Aligned_cols=31 Identities=10% Similarity=0.047 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
|.| +.+.+.++. .||+|++-++.....-|++
T Consensus 250 GGI-t~~ni~~ya-~tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 250 GNI-TLETIRAVA-ETGVDYISSSAPITRSPWL 280 (288)
T ss_pred CCC-CHHHHHHHH-HcCCCEEEEchhhhCCCcc
Confidence 367 688888876 6999999999877655654
No 253
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=38.21 E-value=42 Score=25.06 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeee
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIA 31 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMig 31 (101)
|+|.|+++++++. +.|+|+|.++
T Consensus 141 G~v~t~~~A~~l~-~aGaD~I~vg 163 (325)
T cd00381 141 GNVVTAEAARDLI-DAGADGVKVG 163 (325)
T ss_pred CCCCCHHHHHHHH-hcCCCEEEEC
Confidence 3899999998877 5899999984
No 254
>COG4034 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.09 E-value=22 Score=26.56 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.0
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCee
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSV 28 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgv 28 (101)
+|+=||.|||.+.-...+.++..|.+-|
T Consensus 16 vfgiGGGGDvV~Ai~~y~~l~~~G~E~v 43 (328)
T COG4034 16 VFGIGGGGDVVSAIHLYNFLRHFGEEPV 43 (328)
T ss_pred EEeecCCcchhhHHHHHHHHHhcCcccc
Confidence 3567888999999999999999998753
No 255
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=37.94 E-value=43 Score=21.49 Aligned_cols=28 Identities=29% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
-.++.-+.+.++ -|+|||+++-.-.++.
T Consensus 39 rv~~~~il~Af~-~GADGV~V~gC~~g~C 66 (124)
T PF02662_consen 39 RVDPEFILRAFE-KGADGVLVAGCHPGDC 66 (124)
T ss_pred ccCHHHHHHHHH-cCCCEEEEeCCCCCCC
Confidence 457888888886 5999999987666663
No 256
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=37.86 E-value=95 Score=20.92 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=32.4
Q ss_pred HHHHhcCCCeeeeecccccCCCccCCCCC-----CCCHHHHHHHHHHHHHHhcC
Q psy4403 18 KFKADTNASSVMIARAAQDNCSIFSPTKG-----IQDIHQMIKEYLRYCVDYDN 66 (101)
Q Consensus 18 ~~~~~tg~dgvMigRgAl~nP~iF~~~~~-----~~~~~~~~~~~l~~~~~~~~ 66 (101)
+.++..|+|.|.+-+.+..+-. |-.... ..+..+.+...|+.|.++.-
T Consensus 27 ~~m~~~GidtlIlq~~~~~~~~-~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gm 79 (166)
T PF14488_consen 27 RAMKAIGIDTLILQWTGYGGFA-FYPSKLSPGGFYMPPVDLLEMILDAADKYGM 79 (166)
T ss_pred HHHHHcCCcEEEEEEeecCCcc-cCCccccCccccCCcccHHHHHHHHHHHcCC
Confidence 3455689999999999998833 332122 12345788888888888653
No 257
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.43 E-value=35 Score=26.63 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARA 33 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRg 33 (101)
|||.|+++++++.+ .|+|+|.+|=|
T Consensus 200 g~V~T~e~a~~l~~-aGaD~I~vG~g 224 (404)
T PRK06843 200 GNIVTKEAALDLIS-VGADCLKVGIG 224 (404)
T ss_pred EecCCHHHHHHHHH-cCCCEEEECCC
Confidence 38999999988885 89999998743
No 258
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=37.08 E-value=47 Score=23.45 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|. .+.+.++. +.|+|++.+|++...
T Consensus 175 GI~-~eni~~l~-~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 175 GVK-VDNIREIA-EAGADMFVAGSAIFG 200 (220)
T ss_pred CCC-HHHHHHHH-HcCCCEEEEeHHHhC
Confidence 465 88888777 699999999988644
No 259
>KOG1588|consensus
Probab=37.06 E-value=29 Score=25.54 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 15 GILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 15 d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
.++++.++|||-=+..|||.+.|+.==
T Consensus 119 SlkrLe~eTgCki~IrGrgSmrD~~KE 145 (259)
T KOG1588|consen 119 SLKRLEEETGCKIMIRGRGSMRDKAKE 145 (259)
T ss_pred hHHHHHHHHCCeEEEecCCcccchHHH
Confidence 578999999999999999999998743
No 260
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=36.80 E-value=33 Score=27.11 Aligned_cols=28 Identities=11% Similarity=-0.102 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|-|++++..++. .|+|+|.+|-.-+.-
T Consensus 232 GI~t~~~vaAAla-LGAdgV~~GT~flat 259 (444)
T TIGR02814 232 GIGTPEAAAAAFM-LGADFIVTGSVNQCT 259 (444)
T ss_pred CCCCHHHHHHHHH-cCCcEEEeccHHHhC
Confidence 6999999999994 799999999765553
No 261
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=36.59 E-value=26 Score=25.62 Aligned_cols=26 Identities=8% Similarity=-0.119 Sum_probs=20.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 7 SKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
||.|+|++++..+++. |+-.|++-||
T Consensus 201 sGGIrt~~~A~~~i~a--------g~~~lg~~~~ 226 (257)
T PRK05283 201 AGGVRTAEDAAQYLAL--------ADEILGADWA 226 (257)
T ss_pred cCCCCCHHHHHHHHHH--------HHHHhChhhc
Confidence 4579999999998874 6667777666
No 262
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=36.51 E-value=37 Score=17.18 Aligned_cols=17 Identities=6% Similarity=-0.074 Sum_probs=14.2
Q ss_pred CHHHHHHHHHhcCCCee
Q psy4403 12 DYGGILKFKADTNASSV 28 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgv 28 (101)
|.+++++-..+.||.|+
T Consensus 3 tk~eAe~~A~~~GC~G~ 19 (34)
T PF12518_consen 3 TKAEAEKRAKELGCKGA 19 (34)
T ss_pred cHHHHHHHHHHcCCcch
Confidence 67888888889999875
No 263
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=36.16 E-value=48 Score=21.79 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.+++=+.+.+. -|+||||++=.-++..
T Consensus 41 vn~~fvl~Al~-~GaDGV~v~GC~~geC 67 (132)
T COG1908 41 VNPEFVLKALR-KGADGVLVAGCKIGEC 67 (132)
T ss_pred cCHHHHHHHHH-cCCCeEEEecccccce
Confidence 45677777774 7999999998888773
No 264
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=35.49 E-value=6.7 Score=28.73 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=14.1
Q ss_pred eeeeecccccCCCccC
Q psy4403 27 SVMIARAAQDNCSIFS 42 (101)
Q Consensus 27 gvMigRgAl~nP~iF~ 42 (101)
-|+|||+++.+|-|+-
T Consensus 179 rvLiaRALv~~P~LLi 194 (257)
T COG1119 179 RVLIARALVKDPELLI 194 (257)
T ss_pred HHHHHHHHhcCCCEEE
Confidence 4899999999999874
No 265
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=34.78 E-value=20 Score=26.18 Aligned_cols=46 Identities=28% Similarity=0.318 Sum_probs=30.9
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHH
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLR 59 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~ 59 (101)
++|+| ..-+++|..+...++.+|++.-| +||-- +..+..+ +++||.
T Consensus 202 vIASG---GaG~~ehf~eaf~~~~adAaLAA-------siFH~--~~~~i~e-vK~yL~ 247 (256)
T COG0107 202 VIASG---GAGKPEHFVEAFTEGKADAALAA-------SIFHF--GEITIGE-VKEYLA 247 (256)
T ss_pred EEecC---CCCcHHHHHHHHHhcCccHHHhh-------hhhhc--CcccHHH-HHHHHH
Confidence 46777 68889999999999999987654 56654 3344333 444443
No 266
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=34.75 E-value=38 Score=24.82 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARA 33 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRg 33 (101)
|-++.|+...+| .|||+||+--+
T Consensus 191 iG~pSdAa~aME-lG~DaVL~NTA 213 (262)
T COG2022 191 IGTPSDAAQAME-LGADAVLLNTA 213 (262)
T ss_pred CCChhHHHHHHh-cccceeehhhH
Confidence 789999999995 89999987544
No 267
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=34.68 E-value=37 Score=26.61 Aligned_cols=29 Identities=14% Similarity=-0.073 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.|-|++++..++. .|+|+|.+|-.-+.-+
T Consensus 227 GI~tg~~vaAA~a-lGAd~V~~GT~flat~ 255 (418)
T cd04742 227 GIGTPEAAAAAFA-LGADFIVTGSINQCTV 255 (418)
T ss_pred CCCCHHHHHHHHH-cCCcEEeeccHHHhCc
Confidence 6999999999996 6999999997666544
No 268
>PF14216 DUF4326: Domain of unknown function (DUF4326)
Probab=34.65 E-value=1e+02 Score=18.60 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=26.6
Q ss_pred cCCCeeeeecc-cccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy4403 23 TNASSVMIARA-AQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63 (101)
Q Consensus 23 tg~dgvMigRg-Al~nP~iF~~~~~~~~~~~~~~~~l~~~~~ 63 (101)
.+..+|-|||+ -.+||+.-.. . .+..+++..|.++..+
T Consensus 11 ~~~~~vyIgR~s~wGNPf~~~~-~--~~R~~~v~~yr~~l~~ 49 (86)
T PF14216_consen 11 MPEGAVYIGRPSKWGNPFRVGE-D--GDREEAVEKYREWLWG 49 (86)
T ss_pred CCCCCEEeCCCCcCCCCCcCCC-C--CCHHHHHHHHHHHHHH
Confidence 34568999998 5789987665 2 2456778877777654
No 269
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=33.65 E-value=17 Score=26.06 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=23.2
Q ss_pred eeeeecccccCCCccCCCCC--CCCH---HHHHHHHHHHHHHhc
Q psy4403 27 SVMIARAAQDNCSIFSPTKG--IQDI---HQMIKEYLRYCVDYD 65 (101)
Q Consensus 27 gvMigRgAl~nP~iF~~~~~--~~~~---~~~~~~~l~~~~~~~ 65 (101)
-|+|||+++.+|.|.---++ .++. .+++....++..++.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g 193 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERG 193 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcC
Confidence 58999999999997643122 2222 244444445555543
No 270
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=33.35 E-value=98 Score=22.16 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHH
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIH 51 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~ 51 (101)
..+.+.++. +++.|++.|.++ +..+|.+|..+.+..+++
T Consensus 120 ~~~~e~l~~-Lk~aG~~~v~i~--~E~~~~~~~~i~~~~s~~ 158 (296)
T TIGR00433 120 LLDPEQAKR-LKDAGLDYYNHN--LDTSQEFYSNIISTHTYD 158 (296)
T ss_pred CCCHHHHHH-HHHcCCCEEEEc--ccCCHHHHhhccCCCCHH
Confidence 567777654 557899999997 558999998765434443
No 271
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=33.14 E-value=27 Score=24.65 Aligned_cols=22 Identities=5% Similarity=0.113 Sum_probs=16.3
Q ss_pred HHHHHHhcCCCeeeeecccccCC
Q psy4403 16 ILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 16 ~~~~~~~tg~dgvMigRgAl~nP 38 (101)
....+ +.|+|++.+||+....|
T Consensus 193 ~~~ai-~~Gad~iVvGR~I~~a~ 214 (230)
T PRK00230 193 PAQAI-AAGSDYIVVGRPITQAA 214 (230)
T ss_pred HHHHH-HcCCCEEEECCcccCCC
Confidence 44455 58999999999876543
No 272
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=33.04 E-value=34 Score=23.20 Aligned_cols=29 Identities=7% Similarity=0.031 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.| +++++.++++ +|+++|-++..+. ++.+
T Consensus 151 GI-~~~n~~~~~~-~G~~~v~v~s~i~-~~~~ 179 (190)
T cd00452 151 GV-SLDNAAEWLA-AGVVAVGGGSLLP-KDAV 179 (190)
T ss_pred CC-CHHHHHHHHH-CCCEEEEEchhcc-hhhh
Confidence 68 9999999985 7999999998877 4443
No 273
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=32.42 E-value=50 Score=26.91 Aligned_cols=23 Identities=4% Similarity=0.130 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHhcCCCeeeeec
Q psy4403 10 IVDYGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigR 32 (101)
|.|++|+.++...|+.|++.|+.
T Consensus 526 Vcsp~DA~~~f~~t~~d~Lvi~~ 548 (555)
T COG2192 526 VCSPADAIRTFLSTGLDALVLED 548 (555)
T ss_pred ecCHHHHHHHHHhCCCcEEEEcC
Confidence 89999999999999999988875
No 274
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=32.10 E-value=50 Score=23.32 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.| +.+++.+++ .+|++||-+-++++.
T Consensus 172 GI-~~~n~~~~~-~~GA~giAvisai~~ 197 (221)
T PRK06512 172 GS-DLASAVEVA-ETGAEFVALERAVFD 197 (221)
T ss_pred CC-CHHHHHHHH-HhCCCEEEEhHHhhC
Confidence 35 899998888 589999999999875
No 275
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=32.09 E-value=37 Score=21.48 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHhc--------CCCeeeeecccccCCCccCC
Q psy4403 10 IVDYGGILKFKADT--------NASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 10 I~s~~d~~~~~~~t--------g~dgvMigRgAl~nP~iF~~ 43 (101)
+.+|+|.+.+++++ ....+-|+|.|+++=.++.+
T Consensus 55 ~vnP~dy~~vl~~~~~~~~~~~~~~~~~ia~tAFGdl~~w~e 96 (109)
T PF08887_consen 55 LVNPDDYEDVLDEWLGGTPLFDPDNYIPIARTAFGDLYVWGE 96 (109)
T ss_pred EECHHHHHHHHHHHhcCCccccCceEEEEEEcccccEEEEEc
Confidence 56889999998886 25589999999999999887
No 276
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=31.55 E-value=59 Score=24.55 Aligned_cols=24 Identities=4% Similarity=0.120 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeec
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigR 32 (101)
|.|.++++++++. +.|||+|-++=
T Consensus 143 GnV~t~e~a~~l~-~aGad~I~V~~ 166 (321)
T TIGR01306 143 GNVGTPEAVRELE-NAGADATKVGI 166 (321)
T ss_pred ecCCCHHHHHHHH-HcCcCEEEECC
Confidence 3789999998877 58999998873
No 277
>KOG0185|consensus
Probab=31.50 E-value=28 Score=25.32 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.5
Q ss_pred CCCCCCCCHHHHHHHHHhc
Q psy4403 5 GGSKEIVDYGGILKFKADT 23 (101)
Q Consensus 5 GgsGDI~s~~d~~~~~~~t 23 (101)
|+||||-+.+.+++.+++-
T Consensus 85 G~sGdisD~Q~i~r~L~~l 103 (256)
T KOG0185|consen 85 GASGDISDFQYIQRVLEQL 103 (256)
T ss_pred ecCccHHHHHHHHHHHHHH
Confidence 5688999999999999874
No 278
>PRK14059 hypothetical protein; Provisional
Probab=31.36 E-value=71 Score=22.97 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=27.3
Q ss_pred cCCCCCCCCCHHHHHHHHHh-cCCCeeeeecccc--cCCCc
Q psy4403 3 PSGGSKEIVDYGGILKFKAD-TNASSVMIARAAQ--DNCSI 40 (101)
Q Consensus 3 aNGgsGDI~s~~d~~~~~~~-tg~dgvMigRgAl--~nP~i 40 (101)
.+|-|+-|.+.+|-..+.+. .-+|+||+|-|.+ .||.+
T Consensus 47 ~~g~s~~It~~~~r~~~h~lRa~~DAIlVG~~Tv~~DnP~L 87 (251)
T PRK14059 47 VDGRSGGLGGPADRRVFGLLRALADVVVVGAGTVRAENYGG 87 (251)
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHCCEEEEchhhhhhcCccc
Confidence 35556668777776666553 5699999999865 58887
No 279
>PF12909 DUF3832: Protein of unknown function (DUF3832); InterPro: IPR024308 This domain found in bacteria and Acanthamoeba polyphaga mimivirus (APMV) L591 protein has no known function. In Q0AZ30 from SWISSPROT and other uncharacterised proteins this domain is found C-terminal, while the N terminus shows remote homology to the bacterial toxin/antitoxin 'addiction module' (PF12910 from PFAM).; PDB: 3K6Q_C.
Probab=31.31 E-value=52 Score=20.18 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHhhhCCCCC-hHHHHHHHhcCChhhhC
Q psy4403 52 QMIKEYLRYCVDYDNSAPNSKYCVQSMLGSQQE-SPLGKKFLESQTLEQIW 101 (101)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~~ 101 (101)
+++...++++..|.++ ..+++. .++... -++..++..|++.++|+
T Consensus 41 ~lie~l~dYAedy~~~---~~~~~~--apnR~~H~pYv~rI~l~~d~eev~ 86 (89)
T PF12909_consen 41 DLIEDLRDYAEDYMNR---FPLFYN--APNRRHHYPYVRRILLCDDDEEVK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHT---HHHHHT--STTTGGGHHHHHHHHHSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHhc--CCCcccchHHHHHHHHhCCHHHHH
Confidence 5566666667666543 222211 222222 67888888888888763
No 280
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.11 E-value=46 Score=24.67 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHhcCC-----Ceeeeec-ccccCCC
Q psy4403 11 VDYGGILKFKADTNA-----SSVMIAR-AAQDNCS 39 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~-----dgvMigR-gAl~nP~ 39 (101)
.|+..+.++++.+|. .-++||| +.++.|-
T Consensus 140 cTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pl 174 (284)
T PRK14179 140 CTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPM 174 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHH
Confidence 578889999998874 4899999 9999986
No 281
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=30.65 E-value=1.6e+02 Score=20.50 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.| +.+++.++++ +|+++|-++.++...+
T Consensus 159 GI-~~~n~~~~~~-aGa~~vav~s~l~~~~ 186 (206)
T PRK09140 159 GV-TPENLAPYLA-AGAAGFGLGSALYRPG 186 (206)
T ss_pred CC-CHHHHHHHHH-CCCeEEEEehHhcccc
Confidence 57 8899999985 7999999999986643
No 282
>PRK06801 hypothetical protein; Provisional
Probab=30.62 E-value=59 Score=24.04 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..+++++.++.++||||.+-++=|...
T Consensus 155 ~T~pe~a~~f~~~tgvD~LAvaiGt~H 181 (286)
T PRK06801 155 FTDPQLARDFVDRTGIDALAVAIGNAH 181 (286)
T ss_pred CCCHHHHHHHHHHHCcCEEEeccCCCC
Confidence 567899999999999998888554443
No 283
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=30.46 E-value=48 Score=25.27 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.| +.+++.+++ .+|++||-+.++++..
T Consensus 302 GI-~~~ni~~l~-~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 302 GI-DKSNIPEVL-QAGAKRVAVVRAIMGA 328 (347)
T ss_pred CC-CHHHHHHHH-HcCCcEEEEeHHHhCC
Confidence 57 588998766 6899999999999863
No 284
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=30.43 E-value=1.2e+02 Score=22.16 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=14.4
Q ss_pred HHHHhcCCCeeeeecccccCCCccC
Q psy4403 18 KFKADTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 18 ~~~~~tg~dgvMigRgAl~nP~iF~ 42 (101)
+..+..|+|+||+ ..|+-|.
T Consensus 95 ~~a~~~Gadav~~-----~pP~y~~ 114 (303)
T PRK03620 95 QAAERAGADGILL-----LPPYLTE 114 (303)
T ss_pred HHHHHhCCCEEEE-----CCCCCCC
Confidence 4556789999998 4576553
No 285
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.82 E-value=48 Score=24.83 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHhcCC-----Ceeeeecc-cccCCC
Q psy4403 11 VDYGGILKFKADTNA-----SSVMIARA-AQDNCS 39 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~-----dgvMigRg-Al~nP~ 39 (101)
.|+..+.++++.+|. .-++|||| .++.|-
T Consensus 141 cTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~Pm 175 (301)
T PRK14194 141 CTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPM 175 (301)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHH
Confidence 478889999999864 47999996 888885
No 286
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=29.74 E-value=47 Score=23.95 Aligned_cols=16 Identities=13% Similarity=-0.095 Sum_probs=13.8
Q ss_pred CCCCCCHHHHHHHHHh
Q psy4403 7 SKEIVDYGGILKFKAD 22 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~ 22 (101)
||.|+|++|+..+++.
T Consensus 189 SGGIrt~eda~~~i~a 204 (228)
T COG0274 189 SGGIRTAEDAKAMIEA 204 (228)
T ss_pred cCCcCCHHHHHHHHHH
Confidence 5589999999999974
No 287
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=29.52 E-value=63 Score=22.04 Aligned_cols=31 Identities=6% Similarity=0.019 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.| +++.+.++++...++||=+..|....|-+
T Consensus 160 GI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 160 GL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 46 88999999876659999999998887765
No 288
>PRK06852 aldolase; Validated
Probab=29.50 E-value=54 Score=24.59 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=17.3
Q ss_pred CHHHHHHHHH----hcCCCeeeeeccccc
Q psy4403 12 DYGGILKFKA----DTNASSVMIARAAQD 36 (101)
Q Consensus 12 s~~d~~~~~~----~tg~dgvMigRgAl~ 36 (101)
+.+++.++.+ +-|+.||.+||-+..
T Consensus 242 ~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ 270 (304)
T PRK06852 242 DPEEFLKQLYEQIHISGASGNATGRNIHQ 270 (304)
T ss_pred CHHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 5555555554 379999999996433
No 289
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=29.36 E-value=59 Score=24.72 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeee
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIA 31 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMig 31 (101)
|||.+.+-..+++++...|+||=-
T Consensus 51 gDi~D~~~L~~vf~~~~idaViHF 74 (329)
T COG1087 51 GDLLDRALLTAVFEENKIDAVVHF 74 (329)
T ss_pred eccccHHHHHHHHHhcCCCEEEEC
Confidence 499999999999999999999853
No 290
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=29.28 E-value=52 Score=27.28 Aligned_cols=26 Identities=8% Similarity=0.033 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
=.+++.+.+++..-.+||+.||+++|
T Consensus 607 SV~~~N~~~l~~~~diDG~LVGgASL 632 (645)
T PRK13962 607 SVKSENAAGLFNQPDIDGGLVGGASL 632 (645)
T ss_pred CCCHhHHHHHhcCCCCCeEEeehHhc
Confidence 35677788888888899999999886
No 291
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=29.08 E-value=34 Score=25.27 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHhcC-CCeeeee
Q psy4403 8 KEIVDYGGILKFKADTN-ASSVMIA 31 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg-~dgvMig 31 (101)
|-|.+++|++.+++.|. |+|.-=|
T Consensus 222 GPI~~p~D~~~~l~~t~~~~Gf~G~ 246 (268)
T PF09370_consen 222 GPIATPEDAQYVLRNTKGIHGFIGA 246 (268)
T ss_dssp TTB-SHHHHHHHHHH-TTEEEEEES
T ss_pred CCCCCHHHHHHHHhcCCCCCEEecc
Confidence 38999999999999998 9987654
No 292
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=29.06 E-value=61 Score=24.92 Aligned_cols=27 Identities=7% Similarity=-0.090 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHhc----CCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADT----NASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~t----g~dgvMigRgAl~ 36 (101)
..+++++.++.++| |||.+-++=|-..
T Consensus 194 yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~H 224 (357)
T TIGR01520 194 YTQPEDVYYAYEELSKISPNFSIAAAFGNVH 224 (357)
T ss_pred CCCHHHHHHHHHHhccCCCcceeeeeecccc
Confidence 68999999999987 8898887765543
No 293
>KOG0361|consensus
Probab=29.04 E-value=24 Score=27.86 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=24.8
Q ss_pred HHHHHHHhcC---CCeeeeecccccCCCccCC
Q psy4403 15 GILKFKADTN---ASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 15 d~~~~~~~tg---~dgvMigRgAl~nP~iF~~ 43 (101)
-+++++++++ =|++||-|-|+.|-.+...
T Consensus 377 gaeqfieE~eRSlHDAImIVrralkn~~vVaG 408 (543)
T KOG0361|consen 377 GAEQFIEETERSLHDAIMIVRRALKNDSVVAG 408 (543)
T ss_pred cHHHHHHHHhhhhhhHHHHHHHHhccCcEeeC
Confidence 3667788877 6899999999999999876
No 294
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=28.99 E-value=67 Score=22.79 Aligned_cols=22 Identities=18% Similarity=-0.010 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
.+.++.++.++++...+|.|++
T Consensus 188 ~~~~~~~~~~~i~~~~~d~v~~ 209 (265)
T cd03315 188 SAFTPHDAFRELALGAADAVNI 209 (265)
T ss_pred CCCCHHHHHHHHHhCCCCEEEE
Confidence 6777777777777767776654
No 295
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=27.79 E-value=81 Score=23.58 Aligned_cols=18 Identities=6% Similarity=0.320 Sum_probs=14.4
Q ss_pred cCCCeeeeeccccc--CCCc
Q psy4403 23 TNASSVMIARAAQD--NCSI 40 (101)
Q Consensus 23 tg~dgvMigRgAl~--nP~i 40 (101)
..+|++|+||+.+. ||.+
T Consensus 179 a~~DailvG~~T~~~d~p~l 198 (344)
T TIGR00326 179 AQSDAILVGGGTVKADNPAL 198 (344)
T ss_pred HHCCEEEEChhhHhHhCCcc
Confidence 46999999999876 4655
No 296
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=27.67 E-value=20 Score=20.53 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=15.2
Q ss_pred CHHHHHHHHHhcCCCeeeeec
Q psy4403 12 DYGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigR 32 (101)
++.++-+.+.+||||.+=|.|
T Consensus 22 D~DaaInAmi~~~cD~L~iqR 42 (67)
T COG5481 22 DFDAAINAMIATGCDALRIQR 42 (67)
T ss_pred hHHHHHHHHHHhCCcHHHHHH
Confidence 456677777789998776655
No 297
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=27.25 E-value=51 Score=25.28 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=17.3
Q ss_pred CHHHHHHHHHhc------CCCeeeeecccc
Q psy4403 12 DYGGILKFKADT------NASSVMIARAAQ 35 (101)
Q Consensus 12 s~~d~~~~~~~t------g~dgvMigRgAl 35 (101)
+.+++.++.+.. |+.|+.+||-+.
T Consensus 293 ~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIf 322 (348)
T PRK09250 293 GEDDLLDAVRTAVINKRAGGMGLIIGRKAF 322 (348)
T ss_pred CHHHHHHHHHHHHHhhhcCCcchhhchhhh
Confidence 666666665544 899999999543
No 298
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=26.58 E-value=44 Score=25.57 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARA 33 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRg 33 (101)
+|-|++.++.+. .+|+|+|-+|=|
T Consensus 156 NV~T~e~a~~L~-~aGad~vkVGiG 179 (352)
T PF00478_consen 156 NVVTYEGAKDLI-DAGADAVKVGIG 179 (352)
T ss_dssp EE-SHHHHHHHH-HTT-SEEEESSS
T ss_pred ccCCHHHHHHHH-HcCCCEEEEecc
Confidence 799999998877 599999999966
No 299
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=26.56 E-value=76 Score=24.20 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeec------ccccCCCccCC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIAR------AAQDNCSIFSP 43 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigR------gAl~nP~iF~~ 43 (101)
|||.+.+.+.+++++.-.|.||=-= -.+.+|..|-+
T Consensus 58 ~DI~D~~~v~~~~~~~~~D~VvhfAAESHVDRSI~~P~~Fi~ 99 (340)
T COG1088 58 GDICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQ 99 (340)
T ss_pred ccccCHHHHHHHHHhcCCCeEEEechhccccccccChhhhhh
Confidence 4999999999999999999888321 13567777766
No 300
>PRK08187 pyruvate kinase; Validated
Probab=26.52 E-value=2.3e+02 Score=22.79 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHH--HHHHHHHHHHHHh
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIH--QMIKEYLRYCVDY 64 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~--~~~~~~l~~~~~~ 64 (101)
+-|+..+-.+...-|+|+||+. .|..|.+ +++.+.+..+.++
T Consensus 436 ~PTRAEvtDvAnadgaDavMLs-------------~G~ypveaV~~l~~I~~~~e~~ 479 (493)
T PRK08187 436 LPSRAEMTDAAMAARAECVMLN-------------KGPYLVEAVTFLDDLLARMDGH 479 (493)
T ss_pred CCchHHHHHHHhhcCCCEEeec-------------CCCCHHHHHHHHHHHHHHHHHh
Confidence 6666666666656899999996 2555543 4555555555544
No 301
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=26.48 E-value=1.6e+02 Score=21.20 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy4403 15 GILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63 (101)
Q Consensus 15 d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~ 63 (101)
+..+..++.|+|+||+. -|..|.. +.++++.-|-+++..
T Consensus 87 ~~a~~a~~~G~d~v~~~-----pP~~~~~-----~~~~i~~~~~~ia~~ 125 (292)
T PRK03170 87 ELTKFAEKAGADGALVV-----TPYYNKP-----TQEGLYQHFKAIAEA 125 (292)
T ss_pred HHHHHHHHcCCCEEEEC-----CCcCCCC-----CHHHHHHHHHHHHhc
Confidence 33455677899999995 3555442 334555444444543
No 302
>PRK02227 hypothetical protein; Provisional
Probab=26.29 E-value=76 Score=23.03 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=32.0
Q ss_pred CHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy4403 12 DYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYD 65 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~ 65 (101)
++.++.....+.|++|+||=.+.=.-=.+|.- .+ .+.+.+|++.+.++.
T Consensus 132 ~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~----l~-~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 132 SPLSLPAIAADAGFDGAMLDTAIKDGKSLFDH----MD-EEELAEFVAEARSHG 180 (238)
T ss_pred ChHHHHHHHHHcCCCEEEEecccCCCcchHhh----CC-HHHHHHHHHHHHHcc
Confidence 67788889999999999993332222222221 22 256788888777765
No 303
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=26.10 E-value=77 Score=19.74 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHhcC---CCeeeee
Q psy4403 11 VDYGGILKFKADTN---ASSVMIA 31 (101)
Q Consensus 11 ~s~~d~~~~~~~tg---~dgvMig 31 (101)
.++.+|++++++-| .+++|+|
T Consensus 62 ~~~~~A~rAL~~NG~i~~g~~mvG 85 (100)
T PF05172_consen 62 DNPLSAQRALQKNGTIFSGSLMVG 85 (100)
T ss_dssp SSHHHHHHHHTTTTEEETTCEEEE
T ss_pred CCHHHHHHHHHhCCeEEcCcEEEE
Confidence 47889999999988 4568876
No 304
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=26.02 E-value=34 Score=26.73 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
++...+.-.+.++.-|+||||+
T Consensus 14 ~~~~~~~~L~~LK~~GV~GVmv 35 (402)
T PF01373_consen 14 DWNALEAQLRALKSAGVDGVMV 35 (402)
T ss_dssp ECHHHHHHHHHHHHTTEEEEEE
T ss_pred cHHHHHHHHHHHHHcCCcEEEE
Confidence 4556667777888889999997
No 305
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=26.01 E-value=2.6e+02 Score=22.75 Aligned_cols=52 Identities=4% Similarity=0.024 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCC-HHHHHHHHHHHHHHhcC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQD-IHQMIKEYLRYCVDYDN 66 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~-~~~~~~~~l~~~~~~~~ 66 (101)
+|.+++|+.... ..||+|| |++.-=++|-. .+..| .++-...|-+.+..+.+
T Consensus 273 Ni~~~~d~~~~~-~~ga~Gi----GL~RtEfl~l~-~~~~P~e~eq~~~y~~i~~~~~~ 325 (565)
T TIGR01417 273 NIGTVDDVEGAE-RNGGEGI----GLFRTEFLYMS-RDQLPTEEEQFAAYKTVLEAMES 325 (565)
T ss_pred cCCCHHHHHHHH-hCCCCEE----EeeechHhhhC-CCCCCCHHHHHHHHHHHHHHhCC
Confidence 578999997777 5799998 88888888887 43334 44556666666665543
No 306
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=25.93 E-value=49 Score=26.18 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=9.4
Q ss_pred CCeeeeeccccc
Q psy4403 25 ASSVMIARAAQD 36 (101)
Q Consensus 25 ~dgvMigRgAl~ 36 (101)
+||+|+|||=|+
T Consensus 236 ~dgi~iG~gDL~ 247 (473)
T TIGR01064 236 SDGIMVARGDLG 247 (473)
T ss_pred CCcEEEchHHHH
Confidence 589999997443
No 307
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=25.84 E-value=81 Score=24.21 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
++.+++...+...+-|||+++.-+|++..
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~~G~l~~ 117 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVASTLGVLEA 117 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeCHHHHHh
Confidence 68899988888888999999999999754
No 308
>PLN02803 beta-amylase
Probab=25.75 E-value=59 Score=26.46 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=15.5
Q ss_pred CCCCHHH---HHHHHHhcCCCeeee
Q psy4403 9 EIVDYGG---ILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d---~~~~~~~tg~dgvMi 30 (101)
.+..++. -.+.++..|+||||+
T Consensus 102 ~~~~~~~l~~~L~~LK~~GVdGVmv 126 (548)
T PLN02803 102 NLNKPRAMNASLMALRSAGVEGVMV 126 (548)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEE
Confidence 5655443 456677889999997
No 309
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=25.71 E-value=84 Score=25.02 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeee
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIA 31 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMig 31 (101)
|+|.|+++++.+. +-|+|+|-+|
T Consensus 288 G~V~t~~~a~~~~-~aGad~I~vg 310 (495)
T PTZ00314 288 GNVVTADQAKNLI-DAGADGLRIG 310 (495)
T ss_pred CCcCCHHHHHHHH-HcCCCEEEEC
Confidence 4899999998888 4899999864
No 310
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=25.68 E-value=1.6e+02 Score=21.38 Aligned_cols=21 Identities=5% Similarity=0.034 Sum_probs=14.4
Q ss_pred HHHHHhcCCCeeeeecccccCCCccC
Q psy4403 17 LKFKADTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 17 ~~~~~~tg~dgvMigRgAl~nP~iF~ 42 (101)
.+..+..|+|++|+ ..|.-|.
T Consensus 87 a~~a~~~Gad~v~~-----~pP~y~~ 107 (289)
T cd00951 87 AQAAEKAGADGILL-----LPPYLTE 107 (289)
T ss_pred HHHHHHhCCCEEEE-----CCCCCCC
Confidence 35556789999998 4566543
No 311
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=25.64 E-value=71 Score=22.46 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=12.1
Q ss_pred HHHHHhcCCCeeeee
Q psy4403 17 LKFKADTNASSVMIA 31 (101)
Q Consensus 17 ~~~~~~tg~dgvMig 31 (101)
.+...++|+|++|||
T Consensus 17 a~~v~~~gtDaI~VG 31 (205)
T TIGR01769 17 AKNAKDAGTDAIMVG 31 (205)
T ss_pred HHHHHhcCCCEEEEc
Confidence 346678999999998
No 312
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=25.40 E-value=1e+02 Score=21.18 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=22.5
Q ss_pred CCCCCCCCCHHHHHHHHHh-cCCCeeeeeccccc--CCCcc
Q psy4403 4 SGGSKEIVDYGGILKFKAD-TNASSVMIARAAQD--NCSIF 41 (101)
Q Consensus 4 NGgsGDI~s~~d~~~~~~~-tg~dgvMigRgAl~--nP~iF 41 (101)
||.+ =|.+.++-..+.+. ..+|+||+|++.+. ||.+-
T Consensus 21 ~g~~-~it~~~~~~~~~~lR~~~DaiLvG~~T~~~d~p~l~ 60 (217)
T PRK05625 21 TRYS-RISGPEDFDRVHELRAEVDAVMVGIGTVLADDPSLT 60 (217)
T ss_pred CCCC-CcCCHHHHHHHHHHHHHCCEEEEccceEEccCCcce
Confidence 4444 45555544444333 36999999998775 46653
No 313
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=25.15 E-value=66 Score=21.84 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeec
Q psy4403 9 EIVDYGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigR 32 (101)
++.+.+.++++++ .|+|.||+=.
T Consensus 86 Ev~~~ee~~ea~~-~g~d~I~lD~ 108 (169)
T PF01729_consen 86 EVENLEEAEEALE-AGADIIMLDN 108 (169)
T ss_dssp EESSHHHHHHHHH-TT-SEEEEES
T ss_pred EcCCHHHHHHHHH-hCCCEEEecC
Confidence 3578889998886 8899999743
No 314
>PLN02858 fructose-bisphosphate aldolase
Probab=24.79 E-value=77 Score=28.61 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..+++++.++.++||||.+-++=|-.+
T Consensus 1249 ~T~p~~a~~Fv~~TgvD~LAvaiGt~H 1275 (1378)
T PLN02858 1249 LTDVDQAKEFIDETGIDALAVCIGNVH 1275 (1378)
T ss_pred CCCHHHHHHHHHhcCCcEEeeeccccc
Confidence 779999999999999999888877665
No 315
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=24.68 E-value=2e+02 Score=21.52 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
+.+++++.++.+.||+|.+=+|=|-..=+.=|
T Consensus 155 ~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~ 186 (286)
T COG0191 155 LTDPEEALEFVERTGIDALAAAIGNVHGVYKP 186 (286)
T ss_pred hCCHHHHHHHHhccCcceeeeeccccccCCCC
Confidence 88999999999999999999888877666655
No 316
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=24.55 E-value=1e+02 Score=22.04 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=17.7
Q ss_pred CCCHHH-----HHHHHHhcCCCeeeeec
Q psy4403 10 IVDYGG-----ILKFKADTNASSVMIAR 32 (101)
Q Consensus 10 I~s~~d-----~~~~~~~tg~dgvMigR 32 (101)
+.+.+| ..++.+.+|+|+||...
T Consensus 86 lt~~~~i~~v~~~kL~eiFGADAvLY~~ 113 (215)
T PF05643_consen 86 LTDAEDIHAVPPAKLREIFGADAVLYIT 113 (215)
T ss_pred CCCHHHhccCCHHHHHHHhCCCEEEEEE
Confidence 555554 56889999999999875
No 317
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=24.20 E-value=34 Score=24.00 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHhcCC--Ceeeeecccc
Q psy4403 11 VDYGGILKFKADTNA--SSVMIARAAQ 35 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~--dgvMigRgAl 35 (101)
.+++++.++++ -|+ -|++.||-..
T Consensus 209 ~~l~~a~~~i~-aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 209 RTLEDALEFIE-AGADRIGTSSGRNIW 234 (236)
T ss_dssp HSHHHHHHHHH-TTHSEEEEEEHHHHH
T ss_pred HHHHHHHHHHH-cCChhHHHHHHHHHH
Confidence 88888888884 788 7999998654
No 318
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=23.84 E-value=95 Score=21.55 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=28.6
Q ss_pred cCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403 3 PSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 3 aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~ 42 (101)
.||-+=.|.+.++|.++.++-|.|=|+|+-- ++|=+..
T Consensus 26 ~~GeqlGiv~~~eAL~lA~e~~LDLV~Ispn--a~PPVcK 63 (176)
T COG0290 26 EDGEQLGIVSIEEALKLAEEAGLDLVEISPN--AKPPVCK 63 (176)
T ss_pred CCCcEEcceeHHHHHHHHHHcCCCEEEECCC--CCCCeeE
Confidence 4553333899999999999999999999854 3565543
No 319
>PRK06256 biotin synthase; Validated
Probab=23.68 E-value=1.1e+02 Score=22.55 Aligned_cols=40 Identities=5% Similarity=-0.007 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHH
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIH 51 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~ 51 (101)
.+.+.+.+++ +++.|++.+.+ ++..+|.+|..+.+..+++
T Consensus 148 g~l~~e~l~~-LkeaG~~~v~~--~lEts~~~~~~i~~~~t~~ 187 (336)
T PRK06256 148 GLLTEEQAER-LKEAGVDRYNH--NLETSRSYFPNVVTTHTYE 187 (336)
T ss_pred CcCCHHHHHH-HHHhCCCEEec--CCccCHHHHhhcCCCCCHH
Confidence 4678888765 55689999988 5667899888764333443
No 320
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=23.61 E-value=1.2e+02 Score=21.78 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 7 SKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
||+|. .+.++.+ ..+|+|.+-+|......|++
T Consensus 245 Sggi~-~~~i~~~-~~~gvd~~gvG~~~~~~~~~ 276 (281)
T cd00516 245 SGGLD-EENIRAY-AETGVDVFGVGTLLHSAPPL 276 (281)
T ss_pred eCCCC-HHHHHHH-HHcCCCEEEeCcccccCccc
Confidence 34786 7777776 46899999999888887654
No 321
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=23.57 E-value=1.3e+02 Score=20.62 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=30.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~ 42 (101)
+.+|-.-.+.+.++|.++.+.-|.|=|+|+-++ +|-|++
T Consensus 26 ~~dG~~lgv~~~~eAl~~A~~~~lDLV~v~~~~--~PPVck 64 (177)
T PRK00028 26 GDDGEQLGIVSTREALELAEEAGLDLVEISPNA--KPPVCK 64 (177)
T ss_pred CCCCcCCCceeHHHHHHHHHHcCCCEEEECCCC--CCCEEE
Confidence 345544459999999999999999999998654 476654
No 322
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=23.34 E-value=98 Score=24.02 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|. .+++..+. ..|+|.+.+||++.+
T Consensus 338 GI~-~eti~~l~-~aGADivVVGsaIf~ 363 (391)
T PRK13307 338 GVR-VENVEEAL-KAGADILVVGRAITK 363 (391)
T ss_pred CcC-HHHHHHHH-HcCCCEEEEeHHHhC
Confidence 465 88888777 699999999998543
No 323
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.01 E-value=89 Score=23.90 Aligned_cols=27 Identities=0% Similarity=-0.138 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHhcC----CCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTN----ASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg----~dgvMigRgAl~ 36 (101)
..+++++.++.++|| ||.+=++=|-..
T Consensus 180 yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~H 210 (340)
T cd00453 180 YTQPEDVDYAYTELSKISPRFTIAASFGNVH 210 (340)
T ss_pred CCCHHHHHHHHHHhCCCCcceEEeeecCccc
Confidence 678999999999999 997777765443
No 324
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=22.95 E-value=60 Score=22.88 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeec------------ccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIAR------------AAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigR------------gAl~nP~iF~~~ 44 (101)
||.+++.+ ++-|+-|+-+||.-. +=|.||.+..+|
T Consensus 20 DV~n~eQA-kIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI 66 (208)
T PF01680_consen 20 DVTNAEQA-KIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEI 66 (208)
T ss_dssp EESSHHHH-HHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHH
T ss_pred EecCHHHH-HHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHH
Confidence 68889988 788899999999732 347788877665
No 325
>PLN02389 biotin synthase
Probab=22.73 E-value=2.4e+02 Score=21.64 Aligned_cols=39 Identities=3% Similarity=0.066 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHH
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIH 51 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~ 51 (101)
+.+.+.+.+++ +-|+|.+.+ ..-..|..|.++....+++
T Consensus 175 ~l~~E~l~~Lk-eAGld~~~~--~LeTs~~~y~~i~~~~s~e 213 (379)
T PLN02389 175 MLEKEQAAQLK-EAGLTAYNH--NLDTSREYYPNVITTRSYD 213 (379)
T ss_pred CCCHHHHHHHH-HcCCCEEEe--eecCChHHhCCcCCCCCHH
Confidence 78888887776 579999988 3444588888764333443
No 326
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=22.62 E-value=98 Score=22.49 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
+||.+.+++.++++..++|.|.-.=|.
T Consensus 57 ~Dl~d~~~~~~~~~~~~~d~vih~A~~ 83 (352)
T PRK10084 57 ADICDRAELDRIFAQHQPDAVMHLAAE 83 (352)
T ss_pred ecCCCHHHHHHHHHhcCCCEEEECCcc
Confidence 399999999999998889987776543
No 327
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.60 E-value=1.2e+02 Score=22.39 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.| +.+.+.++. .||+|++-+|.=...=|
T Consensus 241 GI-t~~ni~~~a-~tGvD~Isvg~lt~s~~ 268 (277)
T PRK05742 241 GI-NESTLRVIA-ETGVDYISIGAMTKDVK 268 (277)
T ss_pred CC-CHHHHHHHH-HcCCCEEEEChhhcCCc
Confidence 56 688888877 59999998876433333
No 328
>PF07793 DUF1631: Protein of unknown function (DUF1631); InterPro: IPR012434 The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.
Probab=22.58 E-value=1.6e+02 Score=24.31 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=35.5
Q ss_pred ecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCC-c-------HHHHHHhhhCCCCC
Q psy4403 31 ARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAP-N-------SKYCVQSMLGSQQE 84 (101)
Q Consensus 31 gRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-------~k~~l~~~~~~~~~ 84 (101)
.|-||.||..|.. +..|.+.++.+..+.+..+..... . +...+.++...+.+
T Consensus 386 Lk~Al~D~~FF~~--~~HPaR~LLn~la~~~~~~~~~~~~~~~~l~~~i~~~V~~i~~~f~~ 445 (729)
T PF07793_consen 386 LKVALLDPSFFSD--RQHPARRLLNRLAQAGLGWDEEDDPADDPLYQKIEEVVDRILQEFEG 445 (729)
T ss_pred HHHHhcCccccCC--CCChHHHHHHHHHHHhcCCCccCcchhhHHHHHHHHHHHHHHHhccC
Confidence 5789999999997 557777888888888777765433 1 23455555555443
No 329
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.39 E-value=2.3e+02 Score=20.10 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy4403 15 GILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63 (101)
Q Consensus 15 d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~ 63 (101)
+..+..++.|+|+||+. -|.-|.. +.++++.-|.+++..
T Consensus 83 ~~a~~a~~~Gad~v~v~-----pP~y~~~-----~~~~~~~~~~~ia~~ 121 (281)
T cd00408 83 ELARHAEEAGADGVLVV-----PPYYNKP-----SQEGIVAHFKAVADA 121 (281)
T ss_pred HHHHHHHHcCCCEEEEC-----CCcCCCC-----CHHHHHHHHHHHHhc
Confidence 33355677899999983 4554442 334444444444443
No 330
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=22.37 E-value=1.1e+02 Score=23.65 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.| +.+.+.+++ ..|+|+|-+||++...+
T Consensus 170 GI-~~~n~~~~l-~aGAdgv~vGsaI~~~~ 197 (430)
T PRK07028 170 GL-DAETAAKAV-AAGADIVIVGGNIIKSA 197 (430)
T ss_pred CC-CHHHHHHHH-HcCCCEEEEChHHcCCC
Confidence 47 688888887 47999999999987643
No 331
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=22.12 E-value=2.8e+02 Score=20.01 Aligned_cols=17 Identities=6% Similarity=0.096 Sum_probs=12.7
Q ss_pred HHHHHHHhcCCCeeeee
Q psy4403 15 GILKFKADTNASSVMIA 31 (101)
Q Consensus 15 d~~~~~~~tg~dgvMig 31 (101)
+..+..++.|+|+||+.
T Consensus 87 ~~a~~a~~~Gad~v~~~ 103 (288)
T cd00954 87 ELAKHAEELGYDAISAI 103 (288)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 33455678999999976
No 332
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=22.12 E-value=70 Score=29.20 Aligned_cols=29 Identities=10% Similarity=-0.090 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
|-+.|..|+.+.+ ..|||.|-+||++|-=
T Consensus 1074 Ggl~t~~Dv~kA~-aLGAd~~~~gt~~lia 1102 (1485)
T PRK11750 1074 GGLKTGLDVIKAA-ILGAESFGFGTGPMVA 1102 (1485)
T ss_pred CCcCCHHHHHHHH-HcCCcccccchHHHHH
Confidence 3799999999888 5899999999998854
No 333
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=21.97 E-value=97 Score=24.44 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeee
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIA 31 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMig 31 (101)
|+|.|+++++++.+ .|+|+|-+|
T Consensus 275 g~v~t~e~a~~l~~-aGad~i~vg 297 (486)
T PRK05567 275 GNVATAEAARALIE-AGADAVKVG 297 (486)
T ss_pred eccCCHHHHHHHHH-cCCCEEEEC
Confidence 38999999988885 899999764
No 334
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.93 E-value=1.3e+02 Score=20.51 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
|.| +++++..+++ +|+++|=++.++..
T Consensus 159 GGI-~~~n~~~~l~-aGa~~vav~s~i~~ 185 (187)
T PRK07455 159 GGV-TLENAQAFIQ-AGAIAVGLSGQLFP 185 (187)
T ss_pred CCC-CHHHHHHHHH-CCCeEEEEehhccc
Confidence 355 7899999997 89999988887653
No 335
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=21.80 E-value=44 Score=16.80 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=10.6
Q ss_pred hHHHHHHHhcCChh
Q psy4403 85 SPLGKKFLESQTLE 98 (101)
Q Consensus 85 ~~~~~~i~~~~~~~ 98 (101)
-+.|+++..+.+++
T Consensus 21 gk~rkqfk~asdld 34 (37)
T PF08025_consen 21 GKVRKQFKEASDLD 34 (37)
T ss_pred HHHHHHHhHHhhcc
Confidence 67888888777665
No 336
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR022655 The function is not known. It is found associated with IPR011444 from INTERPRO It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=21.57 E-value=92 Score=22.54 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=15.7
Q ss_pred eeecccccCCCccCCCCCCCCH
Q psy4403 29 MIARAAQDNCSIFSPTKGIQDI 50 (101)
Q Consensus 29 MigRgAl~nP~iF~~~~~~~~~ 50 (101)
++|||+..-|.=|.. .+..|.
T Consensus 30 ~fGrGlV~p~dD~g~-~~~~Ps 50 (266)
T PF07587_consen 30 LFGRGLVEPVDDFGP-QGNPPS 50 (266)
T ss_pred HcCCcCcCCHhhccC-CCCCCC
Confidence 689999999999986 344443
No 337
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.54 E-value=1.3e+02 Score=22.20 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=20.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 7 SKEIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
||.| +.+.+.++. +||+|.+.+|.=..
T Consensus 237 SGGI-~~~ni~~yA-~tGvD~Is~galt~ 263 (278)
T PRK08385 237 SGGI-TPENIEEYA-KLDVDVISLGALTH 263 (278)
T ss_pred ECCC-CHHHHHHHH-HcCCCEEEeChhhc
Confidence 3467 889998876 59999888876433
No 338
>KOG2550|consensus
Probab=21.29 E-value=47 Score=26.38 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=23.2
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeec
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigR 32 (101)
++|.| .|.++.++.+.+ ..|++.||.|-
T Consensus 357 viADG---Giq~~Ghi~KAl-~lGAstVMmG~ 384 (503)
T KOG2550|consen 357 CIADG---GIQNVGHVVKAL-GLGASTVMMGG 384 (503)
T ss_pred eeecC---CcCccchhHhhh-hcCchhheecc
Confidence 35677 699999999888 48999999983
No 339
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=21.27 E-value=1.1e+02 Score=22.38 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
-..|++++.++.++||+|.+=++=|.
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt 176 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGT 176 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCc
Confidence 37799999999999999987765444
No 340
>KOG1210|consensus
Probab=21.20 E-value=3.6e+02 Score=20.65 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHHHhc----CCCeeeeecccccCCCccCC
Q psy4403 7 SKEIVDYGGILKFKADT----NASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~t----g~dgvMigRgAl~nP~iF~~ 43 (101)
|+|+.+++.+..+.+++ |+--..+-=+=..=|.+|.+
T Consensus 90 S~d~~~Y~~v~~~~~~l~~~~~~~d~l~~cAG~~v~g~f~~ 130 (331)
T KOG1210|consen 90 SVDVIDYDSVSKVIEELRDLEGPIDNLFCCAGVAVPGLFED 130 (331)
T ss_pred ccccccHHHHHHHHhhhhhccCCcceEEEecCccccccccc
Confidence 56999999999999999 66666666666778999987
No 341
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=21.19 E-value=1.3e+02 Score=19.47 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARA 33 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRg 33 (101)
||+.+++++.+.++ |||.|...=|
T Consensus 46 ~d~~d~~~~~~al~--~~d~vi~~~~ 69 (183)
T PF13460_consen 46 GDLFDPDSVKAALK--GADAVIHAAG 69 (183)
T ss_dssp SCTTCHHHHHHHHT--TSSEEEECCH
T ss_pred eeehhhhhhhhhhh--hcchhhhhhh
Confidence 49999999998886 8998877654
No 342
>KOG3066|consensus
Probab=21.16 E-value=66 Score=23.38 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=17.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHh
Q psy4403 2 DPSGGSKEIVDYGGILKFKAD 22 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~ 22 (101)
+.||++|+|..+...-+++++
T Consensus 185 I~~~s~g~I~~~~~~~qFlRq 205 (271)
T KOG3066|consen 185 ITNGSKGSIQQLTQQVQFLRQ 205 (271)
T ss_pred HhcCcCcchhhHHHHHHHHHH
Confidence 568888999999999888865
No 343
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=21.14 E-value=2.8e+02 Score=20.05 Aligned_cols=20 Identities=5% Similarity=0.170 Sum_probs=14.2
Q ss_pred HHHHhcCCCeeeeecccccCCCccC
Q psy4403 18 KFKADTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 18 ~~~~~tg~dgvMigRgAl~nP~iF~ 42 (101)
+..++.|+|+||+. .|..|.
T Consensus 93 ~~a~~~Gad~v~v~-----~P~y~~ 112 (293)
T PRK04147 93 KYATELGYDAISAV-----TPFYYP 112 (293)
T ss_pred HHHHHcCCCEEEEe-----CCcCCC
Confidence 44567899999987 466544
No 344
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.73 E-value=1.2e+02 Score=22.34 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
.| +.+.+.++. .+|+|+|-+|.=.
T Consensus 240 GI-t~~ni~~~a-~~Gvd~IAvg~l~ 263 (277)
T PRK08072 240 GI-TLENLPAYG-GTGVDYISLGFLT 263 (277)
T ss_pred CC-CHHHHHHHH-HcCCCEEEEChhh
Confidence 56 888888877 4999999887633
No 345
>PHA03358 Alkaline exonuclease; Provisional
Probab=20.72 E-value=76 Score=18.76 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=17.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNA 25 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~ 25 (101)
+.+|. .|.=++|++.+.++|++
T Consensus 17 DV~G~--~INl~eDFE~fS~eT~~ 38 (75)
T PHA03358 17 DVDGG--IINLYNDYEEFSLETTK 38 (75)
T ss_pred ccCCC--EechHHHHHHHhhccce
Confidence 44564 68889999999999985
No 346
>KOG2870|consensus
Probab=20.65 E-value=94 Score=24.04 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCC---------CCCH---HHHHHHHHHHHHHhcCCCCcHHHHHHh
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKG---------IQDI---HQMIKEYLRYCVDYDNSAPNSKYCVQS 77 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~---------~~~~---~~~~~~~l~~~~~~~~~~~~~k~~l~~ 77 (101)
|.+.+++. ..|++|||+ || -+=||=.+.+++ ..|+ .+...+|+-...|......-.+++|.+
T Consensus 266 iv~aeeAl----nwGfSG~ml-Rg-sGi~wDlRk~~pYd~yd~~efdv~vgt~GDcydRYl~R~eEMrqSl~II~Qcln~ 339 (452)
T KOG2870|consen 266 IVTAEEAL----NWGFSGVML-RG-SGIKWDLRKTQPYDAYDEMEFDVPVGTKGDCYDRYLCRVEEMRQSLRIIQQCLNK 339 (452)
T ss_pred eeeHHHhh----ccCCcceee-cc-CCCCchhhccCcccchhhceeccccccCcchHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 56666663 589999998 32 344665555321 1233 267888888888887666667888888
Q ss_pred hhCC
Q psy4403 78 MLGS 81 (101)
Q Consensus 78 ~~~~ 81 (101)
|..|
T Consensus 340 mP~G 343 (452)
T KOG2870|consen 340 MPPG 343 (452)
T ss_pred CCCC
Confidence 8754
No 347
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=20.62 E-value=1e+02 Score=22.33 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHhcCCCeeee
Q psy4403 10 IVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMi 30 (101)
|.++++++++.+ .|||||+-
T Consensus 238 VN~~~~~~~l~~-~GVDgIiT 257 (263)
T cd08580 238 INTADDYRLAKC-LGADAVMV 257 (263)
T ss_pred eCCHHHHHHHHH-cCCCEEEe
Confidence 456777777664 69999873
No 348
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=20.13 E-value=1.1e+02 Score=22.26 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeec
Q psy4403 9 EIVDYGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigR 32 (101)
++.|.+++.+.. +.|+|.||++.
T Consensus 189 ev~t~eea~~A~-~~gaD~I~ld~ 211 (272)
T cd01573 189 EVDSLEEALAAA-EAGADILQLDK 211 (272)
T ss_pred EcCCHHHHHHHH-HcCCCEEEECC
Confidence 467889988877 68999999984
Done!