Query psy4403
Match_columns 101
No_of_seqs 113 out of 1137
Neff 7.7
Searched_HMMs 29240
Date Sat Aug 17 00:40:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vhn_A Putative flavin oxidore 99.7 9.6E-18 3.3E-22 122.4 4.5 97 1-100 186-297 (318)
2 3b0p_A TRNA-dihydrouridine syn 99.6 1.1E-16 3.8E-21 118.4 5.3 95 1-100 200-305 (350)
3 3kru_A NADH:flavin oxidoreduct 98.5 3.2E-08 1.1E-12 73.0 1.0 42 1-45 280-321 (343)
4 4ef8_A Dihydroorotate dehydrog 98.4 4.2E-08 1.4E-12 72.8 1.1 39 1-43 280-319 (354)
5 1icp_A OPR1, 12-oxophytodienoa 98.4 6.5E-08 2.2E-12 72.1 1.7 39 2-44 305-343 (376)
6 2hsa_B 12-oxophytodienoate red 98.4 6.7E-08 2.3E-12 72.6 1.7 40 1-44 322-361 (402)
7 3oix_A Putative dihydroorotate 98.4 8.7E-08 3E-12 70.8 2.1 39 1-43 278-317 (345)
8 3o07_A Pyridoxine biosynthesis 98.4 2.1E-07 7E-12 67.2 3.9 50 2-65 204-253 (291)
9 3k30_A Histamine dehydrogenase 98.4 1.1E-07 3.6E-12 75.1 2.2 41 1-44 297-337 (690)
10 2y88_A Phosphoribosyl isomeras 98.4 5.4E-08 1.8E-12 67.6 0.3 40 1-43 196-237 (244)
11 3tdn_A FLR symmetric alpha-bet 98.4 4.8E-08 1.6E-12 68.3 0.0 40 1-44 203-242 (247)
12 2r14_A Morphinone reductase; H 98.4 1E-07 3.4E-12 71.1 1.7 40 1-44 302-341 (377)
13 3gr7_A NADPH dehydrogenase; fl 98.4 1.1E-07 3.8E-12 69.9 1.9 41 1-44 280-320 (340)
14 1jub_A Dihydroorotate dehydrog 98.4 1.2E-07 4.2E-12 68.2 2.0 39 1-43 245-284 (311)
15 1vyr_A Pentaerythritol tetrani 98.4 1.1E-07 3.7E-12 70.6 1.7 40 1-44 297-336 (364)
16 1f76_A Dihydroorotate dehydrog 98.3 4.1E-08 1.4E-12 71.6 -0.8 39 1-43 292-331 (336)
17 1z41_A YQJM, probable NADH-dep 98.3 1.5E-07 5E-12 69.0 2.1 40 2-44 281-320 (338)
18 2e6f_A Dihydroorotate dehydrog 98.3 1.5E-07 5.2E-12 67.8 2.1 39 1-43 247-286 (314)
19 2gou_A Oxidoreductase, FMN-bin 98.3 1.2E-07 4.2E-12 70.3 1.5 40 1-44 296-335 (365)
20 4ab4_A Xenobiotic reductase B; 98.3 1.6E-07 5.3E-12 69.9 1.7 40 1-44 282-321 (362)
21 2agk_A 1-(5-phosphoribosyl)-5- 98.3 1.2E-07 4.2E-12 67.5 0.8 40 1-43 208-251 (260)
22 3gka_A N-ethylmaleimide reduct 98.3 2.1E-07 7.3E-12 69.1 1.7 40 1-44 290-329 (361)
23 3aty_A Tcoye, prostaglandin F2 98.2 2.9E-07 9.9E-12 68.7 1.7 40 1-44 310-349 (379)
24 3zwt_A Dihydroorotate dehydrog 98.2 4.2E-07 1.4E-11 67.7 2.1 39 1-43 301-340 (367)
25 1o94_A Tmadh, trimethylamine d 98.2 4.3E-07 1.5E-11 72.2 2.2 41 1-44 294-334 (729)
26 3l5a_A NADH/flavin oxidoreduct 98.1 5.9E-07 2E-11 67.9 1.7 39 1-44 321-359 (419)
27 3hgj_A Chromate reductase; TIM 98.1 8.2E-07 2.8E-11 65.4 2.3 40 2-44 292-331 (349)
28 1ep3_A Dihydroorotate dehydrog 98.1 1.2E-06 4.1E-11 62.7 3.1 39 1-43 244-282 (311)
29 3l5l_A Xenobiotic reductase A; 98.1 8.6E-07 3E-11 65.6 1.8 40 2-44 299-338 (363)
30 1jvn_A Glutamine, bifunctional 98.1 8.3E-07 2.8E-11 69.0 1.8 40 1-43 499-538 (555)
31 1vzw_A Phosphoribosyl isomeras 98.1 4.5E-07 1.5E-11 63.0 0.3 40 1-43 193-234 (244)
32 3i65_A Dihydroorotate dehydrog 98.1 6.2E-07 2.1E-11 67.8 1.0 39 1-43 348-387 (415)
33 3tjl_A NADPH dehydrogenase; OL 98.0 2.5E-07 8.5E-12 69.8 -2.2 41 1-44 316-359 (407)
34 1ka9_F Imidazole glycerol phos 98.0 1.4E-06 4.8E-11 60.6 1.4 39 1-43 199-237 (252)
35 1ps9_A 2,4-dienoyl-COA reducta 98.0 2E-06 6.9E-11 67.5 2.3 40 2-44 284-323 (671)
36 2w6r_A Imidazole glycerol phos 98.0 2.5E-06 8.5E-11 59.8 2.5 39 2-44 204-242 (266)
37 1tv5_A Dhodehase, dihydroorota 97.9 9.6E-07 3.3E-11 67.2 -1.0 39 1-43 376-415 (443)
38 1thf_D HISF protein; thermophI 97.9 3.7E-06 1.2E-10 58.5 1.4 38 2-43 199-236 (253)
39 3tjx_A Dihydroorotate dehydrog 97.8 2.1E-06 7.3E-11 63.1 -0.9 38 2-43 281-319 (354)
40 1qo2_A Molecule: N-((5-phospho 97.7 9.9E-06 3.4E-10 56.2 1.4 38 1-41 191-233 (241)
41 2yzr_A Pyridoxal biosynthesis 97.7 1.6E-05 5.4E-10 58.5 2.3 32 2-37 246-277 (330)
42 2nli_A Lactate oxidase; flavoe 97.6 1.4E-05 4.7E-10 59.4 0.5 58 1-67 287-348 (368)
43 3tdn_A FLR symmetric alpha-bet 97.5 2.5E-05 8.4E-10 54.4 0.9 38 2-43 83-120 (247)
44 1gte_A Dihydropyrimidine dehyd 97.4 6.3E-05 2.1E-09 61.9 2.5 35 1-39 790-824 (1025)
45 3q58_A N-acetylmannosamine-6-p 97.4 4.5E-05 1.5E-09 53.2 1.1 37 1-42 184-220 (229)
46 2nzl_A Hydroxyacid oxidase 1; 97.3 2.9E-05 9.8E-10 58.2 -0.3 58 1-67 310-371 (392)
47 1vcf_A Isopentenyl-diphosphate 97.3 7.9E-05 2.7E-09 54.2 1.8 56 2-66 260-318 (332)
48 1qo2_A Molecule: N-((5-phospho 97.3 9.5E-05 3.3E-09 51.2 1.9 38 2-43 77-114 (241)
49 3igs_A N-acetylmannosamine-6-p 97.2 0.00013 4.4E-09 50.9 1.7 36 1-41 184-219 (232)
50 1kbi_A Cytochrome B2, L-LCR; f 97.1 4.6E-05 1.6E-09 58.8 -0.8 58 1-67 406-467 (511)
51 1h5y_A HISF; histidine biosynt 97.1 0.00023 7.9E-09 48.7 2.5 35 2-40 202-236 (253)
52 3sgz_A Hydroxyacid oxidase 2; 97.0 7.4E-05 2.5E-09 55.4 -0.7 61 1-66 275-335 (352)
53 2nv1_A Pyridoxal biosynthesis 96.9 0.00089 3E-08 48.1 4.3 32 3-38 214-245 (305)
54 1ypf_A GMP reductase; GUAC, pu 96.9 0.0004 1.4E-08 50.7 2.4 32 1-36 213-244 (336)
55 3cwo_X Beta/alpha-barrel prote 96.9 0.00025 8.7E-09 47.5 1.2 34 9-43 182-215 (237)
56 1p4c_A L(+)-mandelate dehydrog 96.9 0.00036 1.2E-08 51.9 2.1 59 1-67 281-342 (380)
57 1eep_A Inosine 5'-monophosphat 96.9 0.00045 1.5E-08 51.5 2.3 36 2-41 260-295 (404)
58 1gox_A (S)-2-hydroxy-acid oxid 96.8 0.00041 1.4E-08 51.3 1.9 58 2-67 284-344 (370)
59 1p0k_A Isopentenyl-diphosphate 96.8 0.00046 1.6E-08 50.4 2.1 58 2-67 255-315 (349)
60 1thf_D HISF protein; thermophI 96.8 0.00035 1.2E-08 48.3 1.3 38 2-43 78-115 (253)
61 2qr6_A IMP dehydrogenase/GMP r 96.6 0.0015 5.2E-08 48.4 3.4 34 2-39 281-314 (393)
62 2z6i_A Trans-2-enoyl-ACP reduc 96.6 0.00097 3.3E-08 48.4 2.3 35 2-40 166-200 (332)
63 1jcn_A Inosine monophosphate d 96.5 0.0019 6.4E-08 49.4 3.6 38 2-43 362-399 (514)
64 3r2g_A Inosine 5'-monophosphat 96.4 0.0018 6.1E-08 48.1 3.1 35 1-39 202-236 (361)
65 3bw2_A 2-nitropropane dioxygen 96.4 0.0017 5.8E-08 47.7 2.6 36 2-41 212-247 (369)
66 4a3u_A NCR, NADH\:flavin oxido 96.4 0.0014 4.8E-08 48.3 2.1 35 10-44 294-328 (358)
67 2y88_A Phosphoribosyl isomeras 96.2 0.0013 4.3E-08 45.3 0.9 38 2-43 78-115 (244)
68 3sr7_A Isopentenyl-diphosphate 96.2 0.0021 7.1E-08 47.8 2.1 57 2-67 282-342 (365)
69 1ka9_F Imidazole glycerol phos 96.2 0.0014 4.8E-08 45.2 1.1 38 2-43 79-116 (252)
70 1h5y_A HISF; histidine biosynt 96.1 0.0015 5.1E-08 44.6 1.1 38 2-43 81-118 (253)
71 1y0e_A Putative N-acetylmannos 96.1 0.0018 6E-08 44.0 1.4 34 2-40 179-212 (223)
72 1vrd_A Inosine-5'-monophosphat 96.0 0.0031 1.1E-07 47.9 2.3 35 2-40 344-378 (494)
73 1vzw_A Phosphoribosyl isomeras 95.9 0.002 6.9E-08 44.3 0.9 38 2-43 79-116 (244)
74 1yxy_A Putative N-acetylmannos 95.9 0.0023 7.9E-08 43.8 1.2 31 2-36 190-220 (234)
75 2gjl_A Hypothetical protein PA 95.9 0.0035 1.2E-07 45.2 2.2 34 2-39 176-209 (328)
76 3vkj_A Isopentenyl-diphosphate 95.8 0.0037 1.3E-07 46.4 2.1 56 2-66 271-329 (368)
77 2zbt_A Pyridoxal biosynthesis 95.8 0.0089 3.1E-07 42.5 3.9 31 3-37 214-244 (297)
78 4fxs_A Inosine-5'-monophosphat 95.8 0.005 1.7E-07 47.2 2.7 34 1-38 337-370 (496)
79 3khj_A Inosine-5-monophosphate 95.8 0.0056 1.9E-07 45.2 2.9 35 2-40 211-245 (361)
80 2qjg_A Putative aldolase MJ040 95.6 0.0043 1.5E-07 43.4 1.7 38 2-42 206-248 (273)
81 4avf_A Inosine-5'-monophosphat 95.6 0.0072 2.5E-07 46.2 3.0 35 1-39 335-369 (490)
82 3bo9_A Putative nitroalkan dio 95.5 0.0056 1.9E-07 44.4 2.1 35 2-40 180-214 (326)
83 3ffs_A Inosine-5-monophosphate 95.5 0.0075 2.6E-07 45.3 2.8 35 1-39 249-283 (400)
84 3vzx_A Heptaprenylglyceryl pho 95.0 0.0059 2E-07 42.7 0.8 33 9-43 188-220 (228)
85 3usb_A Inosine-5'-monophosphat 94.9 0.014 4.7E-07 44.9 2.7 34 2-39 363-396 (511)
86 4fo4_A Inosine 5'-monophosphat 94.7 0.018 6.1E-07 42.7 2.9 35 2-40 215-249 (366)
87 1viz_A PCRB protein homolog; s 94.7 0.0094 3.2E-07 41.9 1.2 33 9-43 190-223 (240)
88 3vk5_A MOEO5; TIM barrel, tran 94.7 0.011 3.6E-07 42.7 1.4 36 8-44 234-271 (286)
89 4adt_A Pyridoxine biosynthetic 94.5 0.016 5.6E-07 41.8 2.1 49 3-65 214-262 (297)
90 1vc4_A Indole-3-glycerol phosp 94.4 0.0087 3E-07 42.1 0.4 30 9-40 216-245 (254)
91 1zfj_A Inosine monophosphate d 94.3 0.034 1.2E-06 42.0 3.5 38 2-43 340-377 (491)
92 2w6r_A Imidazole glycerol phos 94.0 0.015 5.1E-07 40.3 0.9 34 9-43 82-118 (266)
93 2f6u_A GGGPS, (S)-3-O-geranylg 93.8 0.023 7.9E-07 39.7 1.7 30 9-40 198-227 (234)
94 3w01_A Heptaprenylglyceryl pho 93.7 0.016 5.5E-07 40.7 0.7 34 9-44 194-227 (235)
95 4gbu_A NADPH dehydrogenase 1; 93.6 0.014 4.8E-07 43.5 0.3 40 2-44 322-361 (400)
96 1wv2_A Thiazole moeity, thiazo 93.0 0.049 1.7E-06 38.9 2.3 30 2-35 191-220 (265)
97 4a29_A Engineered retro-aldol 92.7 0.072 2.5E-06 37.9 2.8 29 10-39 213-241 (258)
98 1yad_A Regulatory protein TENI 92.7 0.035 1.2E-06 37.5 1.2 32 2-38 168-199 (221)
99 4gj1_A 1-(5-phosphoribosyl)-5- 92.5 0.042 1.5E-06 38.2 1.4 34 9-43 83-116 (243)
100 3tsm_A IGPS, indole-3-glycerol 92.4 0.065 2.2E-06 38.2 2.2 31 9-40 228-258 (272)
101 3qja_A IGPS, indole-3-glycerol 91.1 0.12 3.9E-06 36.8 2.4 29 9-38 221-249 (272)
102 2cu0_A Inosine-5'-monophosphat 91.0 0.13 4.5E-06 39.0 2.8 31 2-36 332-362 (486)
103 2c6q_A GMP reductase 2; TIM ba 91.0 0.14 4.7E-06 37.5 2.8 33 2-38 227-259 (351)
104 1xi3_A Thiamine phosphate pyro 90.3 0.063 2.2E-06 35.7 0.4 28 9-38 170-197 (215)
105 1me8_A Inosine-5'-monophosphat 90.0 0.14 4.8E-06 39.1 2.1 31 2-36 356-386 (503)
106 1mzh_A Deoxyribose-phosphate a 89.9 0.18 6.1E-06 34.6 2.5 23 2-28 179-201 (225)
107 1xm3_A Thiazole biosynthesis p 89.4 0.27 9.2E-06 34.5 3.1 28 9-37 186-213 (264)
108 1i4n_A Indole-3-glycerol phosp 86.6 0.18 6.3E-06 35.4 0.8 30 9-40 210-239 (251)
109 2qr6_A IMP dehydrogenase/GMP r 86.3 0.42 1.5E-05 35.1 2.6 25 9-34 218-242 (393)
110 2htm_A Thiazole biosynthesis p 85.7 0.42 1.5E-05 34.1 2.3 26 9-35 186-211 (268)
111 1w8s_A FBP aldolase, fructose- 85.0 0.69 2.4E-05 32.4 3.1 31 8-38 203-238 (263)
112 2h6r_A Triosephosphate isomera 84.2 0.74 2.5E-05 31.3 2.9 29 9-38 178-206 (219)
113 1pii_A N-(5'phosphoribosyl)ant 82.4 0.63 2.2E-05 35.4 2.1 30 9-40 216-245 (452)
114 2tps_A Protein (thiamin phosph 82.3 0.28 9.6E-06 32.9 0.1 27 9-37 180-206 (227)
115 2pgw_A Muconate cycloisomerase 81.2 0.71 2.4E-05 33.7 2.0 36 9-44 249-284 (384)
116 1hg3_A Triosephosphate isomera 80.1 1.5 5.1E-05 30.3 3.2 30 9-39 184-213 (225)
117 3m9y_A Triosephosphate isomera 79.9 0.78 2.7E-05 32.4 1.8 27 9-36 216-242 (254)
118 1w0m_A TIM, triosephosphate is 79.8 1.6 5.4E-05 30.2 3.3 29 9-38 181-209 (226)
119 3f4w_A Putative hexulose 6 pho 79.0 0.67 2.3E-05 30.7 1.2 27 9-37 167-193 (211)
120 1rd5_A Tryptophan synthase alp 79.0 1.4 4.8E-05 30.3 2.9 28 9-37 209-236 (262)
121 1geq_A Tryptophan synthase alp 77.8 1.4 4.9E-05 29.8 2.6 28 9-37 199-226 (248)
122 4gj1_A 1-(5-phosphoribosyl)-5- 75.3 1.1 3.8E-05 30.9 1.5 28 2-34 200-227 (243)
123 2v82_A 2-dehydro-3-deoxy-6-pho 74.7 0.95 3.3E-05 30.0 1.0 27 9-37 156-182 (212)
124 1ujp_A Tryptophan synthase alp 73.5 1.5 5E-05 30.9 1.7 26 9-37 210-235 (271)
125 4af0_A Inosine-5'-monophosphat 73.1 2 6.8E-05 33.6 2.5 28 1-32 387-414 (556)
126 4drs_A Pyruvate kinase; glycol 72.0 1.4 4.9E-05 34.2 1.5 13 25-37 287-299 (526)
127 3kts_A Glycerol uptake operon 70.7 2.3 7.8E-05 28.7 2.1 29 9-38 158-186 (192)
128 1yya_A Triosephosphate isomera 69.3 2.4 8.3E-05 29.7 2.1 27 9-36 212-238 (250)
129 3eez_A Putative mandelate race 68.9 2.5 8.5E-05 30.9 2.1 36 9-44 245-280 (378)
130 2ovl_A Putative racemase; stru 68.6 2.6 8.8E-05 30.6 2.1 36 9-44 250-285 (371)
131 2btm_A TIM, protein (triosepho 68.4 2.6 8.9E-05 29.6 2.1 27 9-36 212-238 (252)
132 1aw2_A Triosephosphate isomera 67.6 2.5 8.5E-05 29.8 1.8 27 9-36 214-240 (256)
133 2rdx_A Mandelate racemase/muco 65.8 4.1 0.00014 29.6 2.7 35 9-43 245-279 (379)
134 1o5x_A TIM, triosephosphate is 65.7 3.3 0.00011 29.0 2.2 27 12-39 213-239 (248)
135 1mdl_A Mandelate racemase; iso 65.3 4.3 0.00015 29.2 2.7 35 9-43 248-282 (359)
136 3o63_A Probable thiamine-phosp 65.1 1.6 5.4E-05 30.3 0.4 28 9-38 199-226 (243)
137 3qst_A Triosephosphate isomera 65.0 3.5 0.00012 29.0 2.2 31 11-43 216-246 (255)
138 1qop_A Tryptophan synthase alp 64.7 4.5 0.00016 28.0 2.7 28 9-37 213-240 (268)
139 3qtg_A Pyruvate kinase, PK; TI 64.5 3 0.0001 31.9 1.9 13 25-37 247-259 (461)
140 3hqn_D Pyruvate kinase, PK; TI 64.1 2.9 9.9E-05 32.2 1.7 12 25-36 256-267 (499)
141 3krs_A Triosephosphate isomera 63.8 3.7 0.00013 29.2 2.1 30 11-42 235-264 (271)
142 2p10_A MLL9387 protein; putati 62.8 3.9 0.00014 29.3 2.1 31 8-38 235-266 (286)
143 2qdd_A Mandelate racemase/muco 61.4 4 0.00014 29.6 2.0 36 9-44 245-280 (378)
144 3gr4_A Pyruvate kinase isozyme 61.2 3.5 0.00012 32.2 1.7 12 25-36 306-317 (550)
145 3t05_A Pyruvate kinase, PK; te 60.3 3.3 0.00011 32.6 1.5 12 25-36 257-268 (606)
146 1ea0_A Glutamate synthase [NAD 59.9 3.7 0.00013 35.6 1.8 28 9-37 1072-1099(1479)
147 1ofd_A Ferredoxin-dependent gl 59.7 3.7 0.00013 35.7 1.7 29 9-38 1107-1135(1520)
148 2fli_A Ribulose-phosphate 3-ep 59.7 3.4 0.00012 27.3 1.3 27 9-37 178-204 (220)
149 1qap_A Quinolinic acid phospho 59.2 5.6 0.00019 28.4 2.4 32 7-40 258-289 (296)
150 2agk_A 1-(5-phosphoribosyl)-5- 59.1 3.6 0.00012 28.6 1.4 32 9-43 84-120 (260)
151 3khd_A Pyruvate kinase; malari 57.8 3.8 0.00013 31.8 1.4 12 25-36 281-292 (520)
152 2j27_A Triosephosphate isomera 57.5 4.5 0.00015 28.4 1.6 27 12-39 215-241 (250)
153 2v5b_A Triosephosphate isomera 57.2 11 0.00037 26.3 3.5 27 10-36 207-233 (244)
154 2p8b_A Mandelate racemase/muco 57.0 8 0.00027 27.8 3.0 35 9-43 245-279 (369)
155 1tre_A Triosephosphate isomera 56.9 5.3 0.00018 28.1 1.9 25 12-36 214-238 (255)
156 3q94_A Fructose-bisphosphate a 56.7 8.6 0.00029 27.5 3.0 27 10-36 158-184 (288)
157 1gvf_A Tagatose-bisphosphate a 56.3 8.8 0.0003 27.4 3.0 27 10-36 154-180 (286)
158 1rvg_A Fructose-1,6-bisphospha 56.1 8.8 0.0003 27.7 3.0 32 10-41 152-183 (305)
159 3tha_A Tryptophan synthase alp 56.1 5.4 0.00019 27.9 1.9 26 9-36 207-232 (252)
160 3n9r_A Fructose-bisphosphate a 55.5 9.2 0.00031 27.6 3.0 27 10-36 154-180 (307)
161 4a1g_E Protein CASC5; cell cyc 55.0 3.9 0.00013 21.8 0.8 18 23-40 7-24 (53)
162 2isw_A Putative fructose-1,6-b 54.1 10 0.00036 27.5 3.1 27 10-36 152-178 (323)
163 2b7n_A Probable nicotinate-nuc 53.4 4.1 0.00014 28.6 0.9 31 8-40 236-266 (273)
164 3gg8_A Pyruvate kinase; malari 52.3 5.3 0.00018 30.9 1.4 12 25-36 272-283 (511)
165 2hzg_A Mandelate racemase/muco 52.0 10 0.00035 27.6 2.9 35 9-43 255-289 (401)
166 2ps2_A Putative mandelate race 52.0 11 0.00037 27.2 3.0 34 9-42 247-280 (371)
167 2nql_A AGR_PAT_674P, isomerase 51.9 7.7 0.00026 28.2 2.2 34 9-43 267-300 (388)
168 3nav_A Tryptophan synthase alp 51.5 11 0.00036 26.6 2.8 27 9-36 216-242 (271)
169 2yc6_A Triosephosphate isomera 51.2 5.9 0.0002 27.9 1.4 30 12-43 218-247 (257)
170 3th6_A Triosephosphate isomera 50.2 8.1 0.00028 27.0 2.0 31 11-43 212-242 (249)
171 1e0t_A Pyruvate kinase, PK; ph 50.0 7.6 0.00026 29.6 1.9 11 25-35 237-247 (470)
172 3ajx_A 3-hexulose-6-phosphate 49.8 7.5 0.00026 25.3 1.7 28 9-38 166-193 (207)
173 3vnd_A TSA, tryptophan synthas 49.5 12 0.00042 26.2 2.8 27 9-36 214-240 (267)
174 2p4g_A Hypothetical protein; p 49.3 9.4 0.00032 26.5 2.2 38 4-41 51-91 (270)
175 2ekc_A AQ_1548, tryptophan syn 49.1 11 0.00037 26.1 2.5 27 9-37 214-240 (262)
176 3c2e_A Nicotinate-nucleotide p 47.8 4.9 0.00017 28.6 0.5 32 7-40 255-286 (294)
177 2e28_A Pyruvate kinase, PK; al 47.4 7.9 0.00027 30.4 1.7 11 25-35 238-248 (587)
178 1b9b_A TIM, protein (triosepho 47.2 5 0.00017 28.3 0.5 25 12-36 216-240 (255)
179 3ta6_A Triosephosphate isomera 46.6 9.8 0.00034 26.9 1.9 32 11-43 219-250 (267)
180 2vxn_A Triosephosphate isomera 46.3 8.6 0.0003 26.9 1.6 27 12-39 216-242 (251)
181 4g1k_A Triosephosphate isomera 46.2 10 0.00034 27.0 1.9 26 11-36 235-260 (272)
182 3kxq_A Triosephosphate isomera 45.8 9.5 0.00033 27.1 1.8 27 10-36 235-261 (275)
183 1rpx_A Protein (ribulose-phosp 45.6 8.8 0.0003 25.6 1.5 28 9-38 187-214 (230)
184 1vkf_A Glycerol uptake operon 45.5 12 0.00042 25.1 2.2 28 9-38 157-184 (188)
185 1nu5_A Chloromuconate cycloiso 45.5 16 0.00053 26.3 2.9 33 9-41 247-279 (370)
186 1tif_A IF3-N, translation init 45.4 6.6 0.00023 22.7 0.8 39 2-42 20-58 (78)
187 2i9e_A Triosephosphate isomera 45.0 11 0.00036 26.6 1.9 26 11-36 211-236 (259)
188 1m6j_A TIM, TPI, triosephospha 44.7 11 0.00037 26.6 1.9 26 11-36 221-246 (261)
189 3ceu_A Thiamine phosphate pyro 44.5 7 0.00024 25.9 0.9 50 9-64 152-201 (210)
190 1r2r_A TIM, triosephosphate is 44.5 11 0.00037 26.3 1.9 26 11-36 212-237 (248)
191 2uva_G Fatty acid synthase bet 44.2 11 0.00038 33.8 2.3 30 9-38 763-802 (2060)
192 2jgq_A Triosephosphate isomera 44.0 9.1 0.00031 26.5 1.4 25 12-36 198-222 (233)
193 1tkk_A Similar to chloromucona 43.9 17 0.00058 26.0 2.9 31 9-39 246-276 (366)
194 1to3_A Putative aldolase YIHT; 43.1 16 0.00054 26.0 2.6 23 14-37 238-260 (304)
195 1wa3_A 2-keto-3-deoxy-6-phosph 42.9 5.8 0.0002 25.9 0.3 26 9-36 158-183 (205)
196 1lbj_A Motilin; A-helix, B-tur 42.3 20 0.0007 16.2 2.0 13 10-22 4-16 (26)
197 2azn_A HTP reductase, putative 42.0 30 0.001 22.8 3.8 32 4-36 22-54 (219)
198 1rvk_A Isomerase/lactonizing e 41.0 19 0.00066 25.9 2.9 31 9-39 259-290 (382)
199 2jbm_A Nicotinate-nucleotide p 40.2 6 0.00021 28.2 0.0 32 7-40 250-281 (299)
200 2qgy_A Enolase from the enviro 39.5 18 0.00061 26.3 2.5 33 9-41 253-285 (391)
201 3ozy_A Putative mandelate race 39.2 14 0.00046 27.0 1.8 31 9-39 255-285 (389)
202 1ub3_A Aldolase protein; schif 38.6 13 0.00044 25.3 1.5 26 8-34 183-210 (220)
203 3p3d_A Nucleoporin 53; structu 37.2 14 0.00049 23.4 1.5 21 11-31 70-92 (132)
204 1mo0_A TIM, triosephosphate is 37.0 11 0.00037 26.9 0.9 25 12-36 232-256 (275)
205 1h1y_A D-ribulose-5-phosphate 36.9 18 0.0006 24.2 2.0 28 9-38 181-208 (228)
206 1a3w_A Pyruvate kinase; allost 35.5 15 0.00052 28.2 1.6 10 25-34 257-266 (500)
207 3jva_A Dipeptide epimerase; en 35.4 28 0.00096 24.9 3.0 30 9-38 242-271 (354)
208 3oa3_A Aldolase; structural ge 35.2 18 0.00062 25.9 1.9 27 8-35 241-269 (288)
209 2cp9_A EF-TS, EF-TSMT, elongat 34.7 23 0.00078 19.6 1.9 25 11-36 8-32 (64)
210 3ndo_A Deoxyribose-phosphate a 34.6 18 0.00061 25.0 1.7 26 8-34 197-224 (231)
211 1tqj_A Ribulose-phosphate 3-ep 34.0 15 0.0005 24.9 1.2 28 9-38 181-208 (230)
212 3ven_A O-carbamoyltransferase 34.0 33 0.0011 26.8 3.3 26 10-35 545-570 (576)
213 2oz8_A MLL7089 protein; struct 33.6 30 0.001 25.1 2.9 22 9-31 252-273 (389)
214 3i4k_A Muconate lactonizing en 32.5 32 0.0011 24.9 2.9 30 9-38 253-282 (383)
215 1n7k_A Deoxyribose-phosphate a 31.6 19 0.00064 24.8 1.4 27 8-35 199-227 (234)
216 3r12_A Deoxyribose-phosphate a 31.2 22 0.00076 25.0 1.8 25 8-33 223-249 (260)
217 3ro6_B Putative chloromuconate 30.4 29 0.00099 24.8 2.3 27 9-35 243-270 (356)
218 2el8_A Signal-transducing adap 29.2 57 0.0019 19.5 3.2 32 9-41 27-58 (118)
219 3pqz_A Growth factor receptor- 29.0 58 0.002 19.1 3.2 30 12-41 22-52 (117)
220 3ovp_A Ribulose-phosphate 3-ep 28.6 20 0.00068 24.3 1.1 26 9-36 177-202 (228)
221 3glc_A Aldolase LSRF; TIM barr 28.5 37 0.0013 24.1 2.6 27 12-38 235-264 (295)
222 3ov1_A Growth factor receptor- 28.4 57 0.002 19.5 3.1 31 11-41 13-43 (117)
223 2og9_A Mandelate racemase/muco 28.0 36 0.0012 24.7 2.5 22 9-30 266-287 (393)
224 3i6i_A Putative leucoanthocyan 27.8 55 0.0019 22.6 3.4 25 8-32 67-91 (346)
225 1x1o_A Nicotinate-nucleotide p 27.6 34 0.0012 24.2 2.2 30 9-40 248-277 (286)
226 1chr_A Chloromuconate cycloiso 27.5 39 0.0013 24.3 2.6 24 9-32 247-270 (370)
227 3nl6_A Thiamine biosynthetic b 27.4 19 0.00066 27.7 1.0 30 9-39 181-217 (540)
228 1ney_A TIM, triosephosphate is 27.0 9.7 0.00033 26.6 -0.7 25 12-36 212-236 (247)
229 1jvn_A Glutamine, bifunctional 26.8 9.2 0.00032 29.5 -0.9 28 9-37 335-373 (555)
230 1vpx_A Protein (transaldolase 26.2 59 0.002 22.3 3.2 42 11-60 20-61 (230)
231 3ngj_A Deoxyribose-phosphate a 26.1 20 0.00069 24.9 0.8 18 8-26 207-224 (239)
232 2qde_A Mandelate racemase/muco 26.1 50 0.0017 23.9 3.0 22 9-30 248-269 (397)
233 2pp0_A L-talarate/galactarate 25.2 43 0.0015 24.3 2.5 22 9-30 279-300 (398)
234 2nwr_A 2-dehydro-3-deoxyphosph 25.2 38 0.0013 23.7 2.1 21 14-34 205-225 (267)
235 1r0m_A N-acylamino acid racema 24.5 55 0.0019 23.4 2.9 22 9-30 247-268 (375)
236 3sbf_A Mandelate racemase / mu 24.4 46 0.0016 24.3 2.5 28 9-36 260-287 (401)
237 1qpo_A Quinolinate acid phosph 24.0 32 0.0011 24.3 1.6 30 9-40 249-278 (284)
238 4b8w_A GDP-L-fucose synthase; 23.2 76 0.0026 21.0 3.3 26 8-33 45-70 (319)
239 2yy7_A L-threonine dehydrogena 22.8 80 0.0027 21.1 3.4 24 8-31 52-75 (312)
240 4e04_A Bacteriophytochrome (li 22.7 47 0.0016 24.0 2.2 19 15-33 156-174 (327)
241 2gdq_A YITF; mandelate racemas 22.5 52 0.0018 23.7 2.5 22 9-30 244-265 (382)
242 1tzz_A Hypothetical protein L1 22.1 55 0.0019 23.6 2.5 22 9-30 269-294 (392)
243 2czd_A Orotidine 5'-phosphate 21.9 49 0.0017 21.6 2.1 23 15-38 170-192 (208)
244 3q45_A Mandelate racemase/muco 21.9 67 0.0023 23.0 2.9 22 9-30 243-264 (368)
245 3ajr_A NDP-sugar epimerase; L- 21.9 85 0.0029 21.1 3.4 26 8-33 46-71 (317)
246 2xl1_A Arginine attenuator pep 21.8 55 0.0019 14.4 1.5 8 36-43 3-10 (26)
247 3r7f_A Aspartate carbamoyltran 21.6 66 0.0022 23.0 2.8 55 11-65 79-143 (304)
248 1cz3_A Dihydrofolate reductase 21.6 37 0.0013 21.4 1.3 25 12-36 24-49 (168)
249 1zdr_A Dihydrofolate reductase 21.6 80 0.0027 19.9 3.0 24 12-35 24-47 (164)
250 3my9_A Muconate cycloisomerase 21.5 61 0.0021 23.3 2.7 22 9-30 250-271 (377)
251 3tj4_A Mandelate racemase; eno 21.4 57 0.002 23.4 2.5 22 9-30 256-277 (372)
252 3sc6_A DTDP-4-dehydrorhamnose 21.1 79 0.0027 20.9 3.1 24 8-31 40-63 (287)
253 3jr2_A Hexulose-6-phosphate sy 21.0 8.5 0.00029 25.6 -1.9 21 13-34 177-197 (218)
254 3pm6_A Putative fructose-bisph 21.0 72 0.0025 22.9 2.9 25 10-35 171-195 (306)
255 3g23_A Peptidase U61, LD-carbo 20.9 59 0.002 22.6 2.4 21 13-33 57-77 (274)
256 3rr1_A GALD, putative D-galact 20.8 60 0.0021 23.8 2.5 23 9-31 237-259 (405)
257 1fa2_A Beta-amylase; TIM barre 20.7 1.1E+02 0.0039 23.5 4.0 22 9-30 29-53 (498)
258 2ool_A Sensor protein; bacteri 20.7 55 0.0019 23.6 2.2 19 15-33 169-187 (337)
259 3enk_A UDP-glucose 4-epimerase 20.6 94 0.0032 21.1 3.4 23 8-30 62-84 (341)
260 3elf_A Fructose-bisphosphate a 20.5 63 0.0021 23.6 2.5 26 10-35 181-211 (349)
261 3sjn_A Mandelate racemase/muco 20.3 43 0.0015 24.1 1.6 22 9-30 253-274 (374)
262 1kew_A RMLB;, DTDP-D-glucose 4 20.2 85 0.0029 21.5 3.1 25 8-32 57-81 (361)
263 2pzm_A Putative nucleotide sug 20.0 86 0.0029 21.4 3.1 26 8-33 72-97 (330)
No 1
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=99.69 E-value=9.6e-18 Score=122.38 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=81.6
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC-----CC---CCHH---HHHHHHHHHHHHhcCC--
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK-----GI---QDIH---QMIKEYLRYCVDYDNS-- 67 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~-----~~---~~~~---~~~~~~l~~~~~~~~~-- 67 (101)
+++|| +|+|++|+.++++.+|||+|||||+++.|||+|.++. +. .++. +++.+|++.+.++.+.
T Consensus 186 Vi~~G---gI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 262 (318)
T 1vhn_A 186 TFVSG---DIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERK 262 (318)
T ss_dssp EEEES---SCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred EEEEC---CcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCchH
Confidence 46788 9999999999999999999999999999999998761 32 2333 6788999988887653
Q ss_pred -CCcHHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403 68 -APNSKYCVQSMLGSQQE-SPLGKKFLESQTLEQI 100 (101)
Q Consensus 68 -~~~~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~ 100 (101)
...+|.++.+|++++++ +++|+.|.+++|++|+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 297 (318)
T 1vhn_A 263 AVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQIL 297 (318)
T ss_dssp HHHHHHTTHHHHTTTCTTHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHcCCCHHHH
Confidence 23467888999999999 9999999999999886
No 2
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=99.64 E-value=1.1e-16 Score=118.37 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=75.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC----CC---CCCHHHHHHHHHHH---HHHhcCCCCc
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT----KG---IQDIHQMIKEYLRY---CVDYDNSAPN 70 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~----~~---~~~~~~~~~~~l~~---~~~~~~~~~~ 70 (101)
+++|| +|.|++|+.++++ |||+|||||+++.|||+|.++ .+ ..++.+++..++++ ..++......
T Consensus 200 VianG---gI~s~eda~~~l~--GaD~V~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 274 (350)
T 3b0p_A 200 FVTNG---GIRSLEEALFHLK--RVDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVLKGTPPWA 274 (350)
T ss_dssp EEEES---SCCSHHHHHHHHT--TSSEEEECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred EEEEC---CcCCHHHHHHHHh--CCCEEEECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 46788 9999999999997 899999999999999999986 12 23466655544444 4444433344
Q ss_pred HHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403 71 SKYCVQSMLGSQQE-SPLGKKFLESQTLEQI 100 (101)
Q Consensus 71 ~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~ 100 (101)
.++|+.+|++++++ +++|+.|.++++++++
T Consensus 275 ~~kh~~~~~~g~~~~~~~r~~l~~~~~~~~~ 305 (350)
T 3b0p_A 275 VLRHMLNLFRGRPKGRLWRRLLSEGRSLQAL 305 (350)
T ss_dssp HHTTSTTTTTTSTTHHHHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHCCCCHHHH
Confidence 67888999999999 9999999999999876
No 3
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=98.45 E-value=3.2e-08 Score=73.05 Aligned_cols=42 Identities=17% Similarity=0.025 Sum_probs=38.2
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK 45 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~ 45 (101)
+++|| +|.|+++++++++..+||.||+||+++.||+++.++.
T Consensus 280 Vi~~G---gi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k~~ 321 (343)
T 3kru_A 280 TSAVG---LITTQELAEEILSNERADLVALGRELLRNPYWVLHTY 321 (343)
T ss_dssp EEEES---SCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHTC
T ss_pred cceee---eeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEEEe
Confidence 35677 8999999999999888999999999999999998855
No 4
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=98.43 E-value=4.2e-08 Score=72.76 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=35.6
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~ 43 (101)
+++|| +|+|.+|+.++++ +|||+|||||+++.| ||+|.+
T Consensus 280 II~~G---GI~s~~da~~~l~-aGAd~V~vgra~l~~GP~~~~~ 319 (354)
T 4ef8_A 280 IFGCG---GVYTGEDAFLHVL-AGASMVQVGTALQEEGPSIFER 319 (354)
T ss_dssp EEEES---CCCSHHHHHHHHH-HTEEEEEECHHHHHHCTTHHHH
T ss_pred EEEEC---CcCCHHHHHHHHH-cCCCEEEEhHHHHHhCHHHHHH
Confidence 35777 8999999999996 899999999999999 999886
No 5
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=98.41 E-value=6.5e-08 Score=72.08 Aligned_cols=39 Identities=15% Similarity=-0.031 Sum_probs=36.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
++|| +| ++++++++++.++||.||+||++++|||++.++
T Consensus 305 i~~G---~i-~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~ 343 (376)
T 1icp_A 305 IVAG---GY-DREDGNRALIEDRADLVAYGRLFISNPDLPKRF 343 (376)
T ss_dssp EEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred EEeC---CC-CHHHHHHHHHCCCCcEEeecHHHHhCccHHHHH
Confidence 5677 89 999999999999999999999999999999875
No 6
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=98.40 E-value=6.7e-08 Score=72.63 Aligned_cols=40 Identities=18% Similarity=-0.010 Sum_probs=36.6
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +| |+++++++++.++||.||+||+++.|||++.++
T Consensus 322 vi~~G---~i-~~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k~ 361 (402)
T 2hsa_B 322 FICSG---GY-TRELGIEAVAQGDADLVSYGRLFISNPDLVMRI 361 (402)
T ss_dssp EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred EEEeC---CC-CHHHHHHHHHCCCCceeeecHHHHhCchHHHHH
Confidence 35677 89 999999999999999999999999999999875
No 7
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=98.39 E-value=8.7e-08 Score=70.85 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=35.4
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecc-cccCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARA-AQDNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRg-Al~nP~iF~~ 43 (101)
+++|| +|.|.+|+.++++ +|||+|||||+ ++.+||+|.+
T Consensus 278 IIg~G---GI~s~~da~~~l~-aGAd~V~igra~~~~gP~~~~~ 317 (345)
T 3oix_A 278 IIGTG---GVXTGRDAFEHIL-CGASMVQIGTALHQEGPQIFKR 317 (345)
T ss_dssp EEEES---SCCSHHHHHHHHH-HTCSEEEESHHHHHHCTHHHHH
T ss_pred EEEEC---CCCChHHHHHHHH-hCCCEEEEChHHHhcChHHHHH
Confidence 35777 8999999999996 89999999999 8999999876
No 8
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=98.39 E-value=2.1e-07 Score=67.21 Aligned_cols=50 Identities=6% Similarity=0.114 Sum_probs=38.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYD 65 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~ 65 (101)
|||| +|.|++|+.+++ ++||||||+|||++..|. +....+.+.+....|.
T Consensus 204 IAnG---GI~TpedA~~~l-e~GaDGVmVGrAI~~s~D----------P~~~Akafv~Av~~~~ 253 (291)
T 3o07_A 204 FAAG---GVATPADAALLM-QLGCDGVFVGSGIFKSSN----------PVRLATAVVEATTHFD 253 (291)
T ss_dssp EBCS---SCCSHHHHHHHH-HTTCSCEEECGGGGGSSC----------HHHHHHHHHHHHHTTT
T ss_pred ecCC---CCCCHHHHHHHH-HhCCCEEEEchHHhCCCC----------HHHHHHHHHHHHHhcc
Confidence 5788 999999999999 789999999999987543 2344555555554443
No 9
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=98.37 E-value=1.1e-07 Score=75.08 Aligned_cols=41 Identities=7% Similarity=-0.021 Sum_probs=38.0
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +|.++++++++++.++||.||+||++++|||++.++
T Consensus 297 vi~~G---~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~~ 337 (690)
T 3k30_A 297 VVGVG---RFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKI 337 (690)
T ss_dssp EEECS---CCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred EEEeC---CCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHHH
Confidence 35777 999999999999999999999999999999999876
No 10
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=98.36 E-value=5.4e-08 Score=67.56 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=36.3
Q ss_pred CccCCCCCCCCCHHHHHHHHHhc--CCCeeeeecccccCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADT--NASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~t--g~dgvMigRgAl~nP~iF~~ 43 (101)
+++|| +|.+++|+.++++.| |||+||+||+++.+||.|.+
T Consensus 196 via~G---GI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~~~ 237 (244)
T 2y88_A 196 VIASG---GVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQ 237 (244)
T ss_dssp EEEES---CCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHH
T ss_pred EEEEC---CCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCHHH
Confidence 35778 899999999999888 99999999999999998865
No 11
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=98.36 E-value=4.8e-08 Score=68.31 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=0.0
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
++++| +|.|++|+.++++. |||+||+||+++.+||+|.++
T Consensus 203 via~G---GI~~~~d~~~~~~~-Gad~v~vg~al~~~p~~~~~~ 242 (247)
T 3tdn_A 203 IIASG---GAGKMEHFLEAFLR-GADKVSINTAAVENPSLITQI 242 (247)
T ss_dssp --------------------------------------------
T ss_pred EEEEC---CCCCHHHHHHHHHc-CCcHhhccHHHHcCcHHHHHH
Confidence 46777 89999999999976 999999999999999999874
No 12
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=98.36 E-value=1e-07 Score=71.12 Aligned_cols=40 Identities=20% Similarity=0.120 Sum_probs=36.3
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +| ++++++++++.++||.||+||++++|||++.++
T Consensus 302 vi~~G---gi-~~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~ 341 (377)
T 2r14_A 302 LIYCG---NY-DAGRAQARLDDNTADAVAFGRPFIANPDLPERF 341 (377)
T ss_dssp EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred EEEEC---CC-CHHHHHHHHHCCCceEEeecHHHHhCchHHHHH
Confidence 35777 89 799999999999999999999999999999775
No 13
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=98.36 E-value=1.1e-07 Score=69.94 Aligned_cols=41 Identities=15% Similarity=-0.008 Sum_probs=37.0
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +|.|+++++++++..+||.||+||+++.||+++.++
T Consensus 280 Vi~~G---gI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki 320 (340)
T 3gr7_A 280 TGAVG---LITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAA 320 (340)
T ss_dssp EEEES---SCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHH
T ss_pred EEeeC---CCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHH
Confidence 35677 899999999999988899999999999999998764
No 14
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=98.35 E-value=1.2e-07 Score=68.23 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=34.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~ 43 (101)
+++|| +|.|++|+.++++ +|||+||+||+++. +||+|.+
T Consensus 245 vi~~G---GI~~~~da~~~l~-~GAd~V~vg~~~l~~~p~~~~~ 284 (311)
T 1jub_A 245 IIGTG---GIETGQDAFEHLL-CGATMLQIGTALHKEGPAIFDR 284 (311)
T ss_dssp EEEES---SCCSHHHHHHHHH-HTCSEEEECHHHHHHCTHHHHH
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEEEEchHHHhcCcHHHHH
Confidence 35677 8999999999994 79999999999996 9999876
No 15
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=98.35 E-value=1.1e-07 Score=70.59 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=36.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +| |+++++++++..+||.||+||+++.|||++.++
T Consensus 297 vi~~G---gi-t~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~ 336 (364)
T 1vyr_A 297 IIGAG---AY-TAEKAEDLIGKGLIDAVAFGRDYIANPDLVARL 336 (364)
T ss_dssp EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred EEEEC---Cc-CHHHHHHHHHCCCccEEEECHHHHhChhHHHHH
Confidence 35777 89 999999999999999999999999999999875
No 16
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=98.34 E-value=4.1e-08 Score=71.57 Aligned_cols=39 Identities=18% Similarity=-0.049 Sum_probs=35.2
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~ 43 (101)
++++| +|.|.+|+.++++ .|||+||+||+++. |||+|.+
T Consensus 292 Vi~~G---GI~~~~da~~~l~-~GAd~V~igr~~l~~~P~~~~~ 331 (336)
T 1f76_A 292 IIGVG---GIDSVIAAREKIA-AGASLVQIYSGFIFKGPPLIKE 331 (336)
T ss_dssp EEEES---SCCSHHHHHHHHH-HTCSEEEESHHHHHHCHHHHHH
T ss_pred EEEEC---CCCCHHHHHHHHH-CCCCEEEeeHHHHhcCcHHHHH
Confidence 35677 8999999999997 79999999999998 9999875
No 17
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=98.34 E-value=1.5e-07 Score=69.02 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=36.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
++|| +|.|+++++++++..+||.||+||+++.||+++.++
T Consensus 281 i~~G---gi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki 320 (338)
T 1z41_A 281 GAVG---MITDGSMAEEILQNGRADLIFIGRELLRDPFFARTA 320 (338)
T ss_dssp EECS---SCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHH
T ss_pred EEEC---CCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHH
Confidence 5677 899999999999988899999999999999999764
No 18
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=98.33 E-value=1.5e-07 Score=67.84 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=34.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~ 43 (101)
+++|| +|.|++|+.+++ ..|||+||+||+++. +||+|.+
T Consensus 247 vi~~G---GI~~~~da~~~l-~~GAd~V~ig~~~l~~~p~~~~~ 286 (314)
T 2e6f_A 247 VFGCG---GVYSGEDAFLHI-LAGASMVQVGTALQEEGPGIFTR 286 (314)
T ss_dssp EEEES---SCCSHHHHHHHH-HHTCSSEEECHHHHHHCTTHHHH
T ss_pred EEEEC---CCCCHHHHHHHH-HcCCCEEEEchhhHhcCcHHHHH
Confidence 35677 899999999999 479999999999996 9999876
No 19
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=98.32 E-value=1.2e-07 Score=70.29 Aligned_cols=40 Identities=13% Similarity=-0.027 Sum_probs=36.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +| |+++++++++..+||.||+||+++.|||++.++
T Consensus 296 vi~~G---gi-~~~~a~~~l~~g~aD~V~igR~~i~~P~l~~~~ 335 (365)
T 2gou_A 296 LIYAG---RY-NAEKAEQAINDGLADMIGFGRPFIANPDLPERL 335 (365)
T ss_dssp EEEES---SC-CHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHH
T ss_pred EEEeC---CC-CHHHHHHHHHCCCcceehhcHHHHhCchHHHHH
Confidence 35777 89 999999999998899999999999999999775
No 20
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=98.31 E-value=1.6e-07 Score=69.86 Aligned_cols=40 Identities=13% Similarity=-0.045 Sum_probs=36.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| ++ |+++++++++..+||.||+||+++.||+++.++
T Consensus 282 vi~~G---gi-t~e~a~~~l~~g~aD~V~iGR~~lanPdl~~k~ 321 (362)
T 4ab4_A 282 YIVNE---RF-DKASANAALASGKADAVAFGVPFIANPDLPARL 321 (362)
T ss_dssp EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred EEEeC---CC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHHH
Confidence 35777 89 999999999999999999999999999999775
No 21
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.2e-07 Score=67.46 Aligned_cols=40 Identities=5% Similarity=-0.009 Sum_probs=35.9
Q ss_pred CccCCCCCCCCCHHHHHHHHHhc-CCCeeeeeccc--ccCC-CccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADT-NASSVMIARAA--QDNC-SIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~t-g~dgvMigRgA--l~nP-~iF~~ 43 (101)
++||| +|.|++|+.++++.| ||++||+||++ ..+| |.|.+
T Consensus 208 VIasG---Gi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~ 251 (260)
T 2agk_A 208 IVYAG---GAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFED 251 (260)
T ss_dssp EEEES---CCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHH
T ss_pred EEEeC---CCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHH
Confidence 36777 899999999999999 99999999998 8888 88875
No 22
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=98.27 E-value=2.1e-07 Score=69.11 Aligned_cols=40 Identities=8% Similarity=-0.084 Sum_probs=36.4
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| ++ |+++++++++..+||.||+||+++.||+++.++
T Consensus 290 vi~~G---gi-t~e~a~~~l~~G~aD~V~iGR~~ladPdl~~k~ 329 (361)
T 3gka_A 290 FIVNE---NF-TLDSAQAALDAGQADAVAWGKLFIANPDLPRRF 329 (361)
T ss_dssp EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred EEEeC---CC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHHH
Confidence 35677 79 999999999998999999999999999999875
No 23
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=98.23 E-value=2.9e-07 Score=68.71 Aligned_cols=40 Identities=8% Similarity=-0.016 Sum_probs=36.3
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +| |+++++++++..+||.||+||+++.||+++.++
T Consensus 310 vi~~G---~i-t~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~ 349 (379)
T 3aty_A 310 KISNL---RY-DFEEADQQIREGKVDAVAFGAKFIANPDLVERA 349 (379)
T ss_dssp EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred EEEEC---CC-CHHHHHHHHHcCCCeEEEecHHHHhCcHHHHHH
Confidence 35677 89 999999999998899999999999999999765
No 24
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=98.21 E-value=4.2e-07 Score=67.65 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=34.7
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc-cCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ-DNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl-~nP~iF~~ 43 (101)
+++|| +|.|.+|+.++++ +|||+|||||+++ .+||+|.+
T Consensus 301 vI~~G---GI~s~~da~~~l~-~GAd~V~vgra~l~~gP~~~~~ 340 (367)
T 3zwt_A 301 IIGVG---GVSSGQDALEKIR-AGASLVQLYTALTFWGPPVVGK 340 (367)
T ss_dssp EEEES---SCCSHHHHHHHHH-HTCSEEEESHHHHHHCTHHHHH
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEEEECHHHHhcCcHHHHH
Confidence 35777 8999999999997 8999999999996 67999876
No 25
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=98.20 E-value=4.3e-07 Score=72.17 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=37.7
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +|.|+++++++++..+||.||+||++|.||+++.++
T Consensus 294 vi~~G---~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~ 334 (729)
T 1o94_A 294 VLGVG---RYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKV 334 (729)
T ss_dssp EECCS---CCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHH
T ss_pred EEEeC---CCCCHHHHHHHHHCCCCCEEEeCchhhcCchHHHHH
Confidence 35677 899999999999999999999999999999999775
No 26
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=98.14 E-value=5.9e-07 Score=67.87 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=35.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +|.|+++++++++. ||.||+||+++.||+++.++
T Consensus 321 VI~~G---gI~t~e~Ae~~L~~--aDlVaiGR~~IanPdlv~ki 359 (419)
T 3l5a_A 321 LIASG---GINSPESALDALQH--ADMVGMSSPFVTEPDFVHKL 359 (419)
T ss_dssp EEECS---SCCSHHHHHHHGGG--CSEEEESTHHHHCTTHHHHH
T ss_pred EEEEC---CCCCHHHHHHHHHh--CCcHHHHHHHHHCcHHHHHH
Confidence 35677 89999999999998 99999999999999999765
No 27
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=98.14 E-value=8.2e-07 Score=65.39 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=36.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
++|| .|.|+++++++++...||.||+||+++.||+++.++
T Consensus 292 i~~G---gi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~ 331 (349)
T 3hgj_A 292 GAVG---LITTPEQAETLLQAGSADLVLLGRVLLRDPYFPLRA 331 (349)
T ss_dssp EECS---SCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHH
T ss_pred EEEC---CCCCHHHHHHHHHCCCceEEEecHHHHhCchHHHHH
Confidence 5677 899999999999988899999999999999998763
No 28
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=98.13 E-value=1.2e-06 Score=62.69 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=34.9
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
++++| .|.|++|+.++++ .|||+||+||+++.+|+++.+
T Consensus 244 via~G---GI~~~~d~~~~l~-~GAd~V~vg~~~l~~p~~~~~ 282 (311)
T 1ep3_A 244 IIGMG---GVANAQDVLEMYM-AGASAVAVGTANFADPFVCPK 282 (311)
T ss_dssp EEECS---SCCSHHHHHHHHH-HTCSEEEECTHHHHCTTHHHH
T ss_pred EEEEC---CcCCHHHHHHHHH-cCCCEEEECHHHHcCcHHHHH
Confidence 35677 8999999999997 799999999999999998765
No 29
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=98.10 E-value=8.6e-07 Score=65.62 Aligned_cols=40 Identities=8% Similarity=-0.204 Sum_probs=36.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
++|| .|.|+++++++++...||.||+||+++.||+++.++
T Consensus 299 i~~G---gI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~ 338 (363)
T 3l5l_A 299 TSAW---GFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFA 338 (363)
T ss_dssp EECS---STTSHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHH
T ss_pred EEeC---CCCCHHHHHHHHHCCCccEEEecHHHHhCchHHHHH
Confidence 5677 899999999999988899999999999999998764
No 30
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=98.10 E-value=8.3e-07 Score=69.02 Aligned_cols=40 Identities=10% Similarity=-0.169 Sum_probs=37.2
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
++||| +|.|++|+.++++.+||+|||+||++..+||.|.+
T Consensus 499 VIasG---Gi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e 538 (555)
T 1jvn_A 499 VIASS---GAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVND 538 (555)
T ss_dssp EEECS---CCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHH
T ss_pred EEEEC---CCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHH
Confidence 46788 89999999999998999999999999999999886
No 31
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=98.10 E-value=4.5e-07 Score=63.03 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=36.1
Q ss_pred CccCCCCCCCCCHHHHHHHHHhc--CCCeeeeecccccCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADT--NASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~t--g~dgvMigRgAl~nP~iF~~ 43 (101)
++++| +|.+++|+.++++.| ||||||+||+++.+||.|.+
T Consensus 193 via~G---GI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~ 234 (244)
T 1vzw_A 193 VVASG---GVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEE 234 (244)
T ss_dssp EEEES---CCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHH
T ss_pred EEEEC---CCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHH
Confidence 35777 899999999999888 99999999999999998765
No 32
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=98.10 E-value=6.2e-07 Score=67.80 Aligned_cols=39 Identities=18% Similarity=-0.020 Sum_probs=35.2
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~ 43 (101)
++++| +|.|.+|+.++++ +|||+|||||+++.+ ||+|.+
T Consensus 348 IIg~G---GI~s~eDa~e~l~-aGAd~VqIgra~l~~GP~~~~~ 387 (415)
T 3i65_A 348 IIASG---GIFSGLDALEKIE-AGASVCQLYSCLVFNGMKSAVQ 387 (415)
T ss_dssp EEECS---SCCSHHHHHHHHH-HTEEEEEESHHHHHHGGGHHHH
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEEEEcHHHHhcCHHHHHH
Confidence 35677 8999999999997 899999999999988 999876
No 33
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=98.03 E-value=2.5e-07 Score=69.81 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=36.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHh---cCCCeeeeecccccCCCccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKAD---TNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~---tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++|| +|.+.+|+.++++. ++||.||+||+++.||+++.++
T Consensus 316 vI~~G---gi~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL~~ri 359 (407)
T 3tjl_A 316 ILKAG---NYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKL 359 (407)
T ss_dssp EEEES---CGGGGTTTTHHHHHHHTTSSEEEECSHHHHHCTTHHHHH
T ss_pred EEecC---CCCCHHHHHHHHHhhccCCCeEEEeChhhhhCchHHHHH
Confidence 36788 89999999888888 8899999999999999999875
No 34
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=98.01 E-value=1.4e-06 Score=60.59 Aligned_cols=39 Identities=13% Similarity=-0.023 Sum_probs=34.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
++++| +|.+++|+.++++ +||||||+|++++.+||.|.+
T Consensus 199 via~G---GI~~~~d~~~~~~-~Gadgv~vgsal~~~~~~~~~ 237 (252)
T 1ka9_F 199 VIASG---GAGRMEHFLEAFQ-AGAEAALAASVFHFGEIPIPK 237 (252)
T ss_dssp EEEES---CCCSHHHHHHHHH-TTCSEEEESHHHHTTSSCHHH
T ss_pred EEEeC---CCCCHHHHHHHHH-CCCHHHHHHHHHHcCCCCHHH
Confidence 35777 8999999999985 999999999999999988765
No 35
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=98.00 E-value=2e-06 Score=67.52 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=36.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
++|| +|.|+++++++++..+||.||+||+++.||+++.++
T Consensus 284 i~~G---gi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~ 323 (671)
T 1ps9_A 284 VTTN---RINDPQVADDILSRGDADMVSMARPFLADAELLSKA 323 (671)
T ss_dssp EECS---SCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHH
T ss_pred EEeC---CCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHH
Confidence 5677 899999999999988899999999999999999765
No 36
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=97.99 E-value=2.5e-06 Score=59.85 Aligned_cols=39 Identities=13% Similarity=-0.057 Sum_probs=27.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++| +|.+++|+.++++ +||||||+|++++.+||.|.++
T Consensus 204 ia~G---GI~~~ed~~~~~~-~Gadgv~vgsal~~~~~~~~~~ 242 (266)
T 2w6r_A 204 IASG---GAGKMEHFLEAFL-AGADAALAASVFHFREIDMREL 242 (266)
T ss_dssp EEES---CCCSHHHHHHHHH-HTCSEEEESTTTC---------
T ss_pred EEeC---CCCCHHHHHHHHH-cCCHHHHccHHHHcCCCCHHHH
Confidence 5677 8999999999985 9999999999999999998874
No 37
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=97.91 E-value=9.6e-07 Score=67.22 Aligned_cols=39 Identities=15% Similarity=-0.049 Sum_probs=34.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP 43 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~ 43 (101)
++++| +|.|.+|+.++++ .|||+|||||+++. +||+|.+
T Consensus 376 VIg~G---GI~s~~DA~e~l~-aGAd~Vqigrall~~gP~l~~~ 415 (443)
T 1tv5_A 376 IIASG---GIFSGLDALEKIE-AGASVCQLYSCLVFNGMKSAVQ 415 (443)
T ss_dssp EEEES---SCCSHHHHHHHHH-TTEEEEEESHHHHHHGGGHHHH
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEEEEcHHHHhcChHHHHH
Confidence 35677 8999999999996 79999999999886 9999876
No 38
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=97.86 E-value=3.7e-06 Score=58.50 Aligned_cols=38 Identities=13% Similarity=-0.060 Sum_probs=33.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+++| +|.+++|+.++++ +||||||+|++++.+||.+.+
T Consensus 199 ia~G---GI~~~~d~~~~~~-~Gadgv~vGsal~~~~~~~~~ 236 (253)
T 1thf_D 199 IASG---GAGKMEHFLEAFL-AGADAALAASVFHFREIDVRE 236 (253)
T ss_dssp EEES---CCCSHHHHHHHHH-TTCSEEEESHHHHTTCSCHHH
T ss_pred EEEC---CCCCHHHHHHHHH-cCChHHHHHHHHHcCCCCHHH
Confidence 5677 8999999999995 999999999999999987654
No 39
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=97.79 E-value=2.1e-06 Score=63.09 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=33.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc-cCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ-DNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl-~nP~iF~~ 43 (101)
+++| +|.|.+|+.+++. .|||.|||++|++ .+||+|.+
T Consensus 281 Ig~G---GI~s~~Da~e~i~-aGAs~Vqv~Ta~~y~GP~~~~~ 319 (354)
T 3tjx_A 281 FGCG---GVYTGEDAFLHVL-AGASMVQVGTALQEEGPSIFER 319 (354)
T ss_dssp EEES---SCCSHHHHHHHHH-HTEEEEEECHHHHHHCTTHHHH
T ss_pred EEeC---CcCCHHHHHHHHH-cCCCEEEEChhhhhcCchHHHH
Confidence 5677 8999999999995 8999999999976 78999876
No 40
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=97.70 E-value=9.9e-06 Score=56.18 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=33.2
Q ss_pred CccCCCCCCCCCHHHHHHHHHhc----C-CCeeeeecccccCCCcc
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADT----N-ASSVMIARAAQDNCSIF 41 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~t----g-~dgvMigRgAl~nP~iF 41 (101)
++|+| +|.+++|+.++++.| | |||||+|++++..|.-+
T Consensus 191 via~G---GI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~ 233 (241)
T 1qo2_A 191 VLAAG---GISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTV 233 (241)
T ss_dssp EEEES---SCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCH
T ss_pred EEEEC---CCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCH
Confidence 35777 899999999999988 9 99999999999877643
No 41
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=97.67 E-value=1.6e-05 Score=58.51 Aligned_cols=32 Identities=6% Similarity=0.050 Sum_probs=29.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
+||| +|.|++|+.++++. |||||||||+++..
T Consensus 246 VAeG---GI~Tpeda~~~l~~-GaDgV~VGsaI~~a 277 (330)
T 2yzr_A 246 FAAG---GVATPADAALMMQL-GSDGVFVGSGIFKS 277 (330)
T ss_dssp EECS---CCCSHHHHHHHHHT-TCSCEEESHHHHTS
T ss_pred EEEC---CCCCHHHHHHHHHc-CcCEEeeHHHHhcC
Confidence 5888 89999999999985 99999999999853
No 42
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=97.55 E-value=1.4e-05 Score=59.40 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=41.4
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC-CCCC---CHHHHHHHHHHHHHHhcCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT-KGIQ---DIHQMIKEYLRYCVDYDNS 67 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~-~~~~---~~~~~~~~~l~~~~~~~~~ 67 (101)
++++| +|++.+|+.+++. .|||+||||| ||+|... .|.. ...+.+.++++.+..+.+.
T Consensus 287 Via~G---GI~~g~D~~kala-lGAd~V~iGr-----~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~ 348 (368)
T 2nli_A 287 IVFDS---GVRRGEHVAKALA-SGADVVALGR-----PVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGS 348 (368)
T ss_dssp EEECS---SCCSHHHHHHHHH-TTCSEEEECH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEEEECH-----HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35677 8999999999998 9999999999 6676631 1111 1225667777776666554
No 43
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=97.47 E-value=2.5e-05 Score=54.41 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=33.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
++|| .|.|++|++++++ .|||+|+|||.++.||+++.+
T Consensus 83 i~~G---gi~~~~~~~~~l~-~Gad~V~ig~~~l~dp~~~~~ 120 (247)
T 3tdn_A 83 IASG---GAGKMEHFLEAFL-RGADKVSINTAAVENPSLITQ 120 (247)
T ss_dssp EEES---CCCSHHHHHHHHH-TTCSEECCSHHHHHCTHHHHH
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCeeehhhHHhhChHHHHH
Confidence 4567 8999999999995 799999999999999997755
No 44
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.39 E-value=6.3e-05 Score=61.91 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=31.3
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
+++|| +|.|.+|+.++++ .|||+|||||+++.+||
T Consensus 790 vi~~G---GI~s~~da~~~l~-~Ga~~v~vg~~~l~~~~ 824 (1025)
T 1gte_A 790 ILATG---GIDSAESGLQFLH-SGASVLQVCSAVQNQDF 824 (1025)
T ss_dssp EEEES---SCCSHHHHHHHHH-TTCSEEEESHHHHTSCT
T ss_pred EEEec---CcCCHHHHHHHHH-cCCCEEEEeeccccCCc
Confidence 35777 8999999999997 89999999999998665
No 45
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=97.35 E-value=4.5e-05 Score=53.21 Aligned_cols=37 Identities=11% Similarity=-0.030 Sum_probs=30.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~ 42 (101)
++++| .|.|++|+.++++ .||||||+| .++.+||.+.
T Consensus 184 vIA~G---GI~t~~d~~~~~~-~GadgV~VG-sai~~p~~~~ 220 (229)
T 3q58_A 184 VIAEG---RYNTPALAANAIE-HGAWAVTVG-SAITRIEHIC 220 (229)
T ss_dssp EEEES---SCCSHHHHHHHHH-TTCSEEEEC-HHHHCHHHHH
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEEEEc-hHhcChHHHH
Confidence 35777 7999999999997 599999999 6666787653
No 46
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=97.31 E-value=2.9e-05 Score=58.16 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=39.8
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC-CCCCC---HHHHHHHHHHHHHHhcCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT-KGIQD---IHQMIKEYLRYCVDYDNS 67 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~-~~~~~---~~~~~~~~l~~~~~~~~~ 67 (101)
++++| +|++.+|+.+++. .|||+||||| ||+|... .+... ..+.+.++++.+..+.+.
T Consensus 310 Via~G---GI~~g~Dv~kala-lGAd~V~iGr-----~~l~~~~~~g~~gv~~~l~~l~~el~~~m~~~G~ 371 (392)
T 2nzl_A 310 VFLDG---GVRKGTDVLKALA-LGAKAVFVGR-----PIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGC 371 (392)
T ss_dssp EEECS---SCCSHHHHHHHHH-TTCSEEEECH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEC---CCCCHHHHHHHHH-hCCCeeEECH-----HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35677 8999999999998 8999999999 5555421 11111 225566777766665543
No 47
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=97.29 E-value=7.9e-05 Score=54.23 Aligned_cols=56 Identities=20% Similarity=0.064 Sum_probs=38.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCH---HHHHHHHHHHHHHhcC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDI---HQMIKEYLRYCVDYDN 66 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~---~~~~~~~l~~~~~~~~ 66 (101)
+++| +|.|.+|+.+++. .|||+|||||+.+..+ . .|.... .+.+.++++....+.+
T Consensus 260 ia~G---GI~~~~d~~kal~-~GAd~V~igr~~l~~~--~---~G~~gv~~~~~~l~~el~~~m~~~G 318 (332)
T 1vcf_A 260 VASG---GVYTGTDGAKALA-LGADLLAVARPLLRPA--L---EGAERVAAWIGDYLEELRTALFAIG 318 (332)
T ss_dssp EEES---SCCSHHHHHHHHH-HTCSEEEECGGGHHHH--T---TCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEC---CCCCHHHHHHHHH-hCCChHhhhHHHHHHH--h---ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677 8999999999997 6999999999777655 1 232111 2445566665555543
No 48
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=97.26 E-value=9.5e-05 Score=51.16 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=33.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+.+| .|.+.+++.++++ +|||+|++|++++.||+++.+
T Consensus 77 i~~G---gi~~~~~~~~~~~-~Gad~V~lg~~~l~~p~~~~~ 114 (241)
T 1qo2_A 77 QIGG---GIRSLDYAEKLRK-LGYRRQIVSSKVLEDPSFLKS 114 (241)
T ss_dssp EEES---SCCSHHHHHHHHH-TTCCEEEECHHHHHCTTHHHH
T ss_pred EEEC---CCCCHHHHHHHHH-CCCCEEEECchHhhChHHHHH
Confidence 3566 8999999999886 799999999999999997654
No 49
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=97.16 E-value=0.00013 Score=50.93 Aligned_cols=36 Identities=11% Similarity=-0.047 Sum_probs=29.2
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
++++| .|.|++|+.++++ .||||||+| .++.+|+..
T Consensus 184 vIA~G---GI~t~~d~~~~~~-~GadgV~VG-sal~~p~~~ 219 (232)
T 3igs_A 184 VIAEG---RYNSPALAAEAIR-YGAWAVTVG-SAITRLEHI 219 (232)
T ss_dssp EEEES---CCCSHHHHHHHHH-TTCSEEEEC-HHHHCHHHH
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEEEEe-hHhcCHHHH
Confidence 35677 7999999999997 599999999 555567653
No 50
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=97.14 E-value=4.6e-05 Score=58.81 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=40.6
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC-CCCCC---HHHHHHHHHHHHHHhcCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT-KGIQD---IHQMIKEYLRYCVDYDNS 67 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~-~~~~~---~~~~~~~~l~~~~~~~~~ 67 (101)
++++| +|++.+|+.+++. .|||+||||| ||+|... .|... ..+.+.++++.+..+.+.
T Consensus 406 Via~G---GI~~g~Dv~kaLa-lGAdaV~iGr-----~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~ 467 (511)
T 1kbi_A 406 VFVDG---GVRRGTDVLKALC-LGAKGVGLGR-----PFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGV 467 (511)
T ss_dssp EEEES---SCCSHHHHHHHHH-HTCSEEEECH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEEEECH-----HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35677 8999999999997 8999999999 5555431 11111 225677777776666554
No 51
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=97.10 E-value=0.00023 Score=48.68 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=30.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
+++| .|.+.+|+.+++ ++|||+||+|++++.+++-
T Consensus 202 ia~G---Gi~~~~~~~~~~-~~Ga~~v~vgsal~~~~~~ 236 (253)
T 1h5y_A 202 IASG---GAGRVEHFYEAA-AAGADAVLAASLFHFRVLS 236 (253)
T ss_dssp EEES---CCCSHHHHHHHH-HTTCSEEEESHHHHTTSSC
T ss_pred EEeC---CCCCHHHHHHHH-HcCCcHHHHHHHHHcCCCC
Confidence 4677 899999999998 5999999999999877643
No 52
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=97.02 E-value=7.4e-05 Score=55.38 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=39.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDN 66 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (101)
++++| +|++.+|+.+++. .|||+|||||+.|..+....+ .+.....+.+.++++.+....+
T Consensus 275 Via~G---GI~~g~Dv~kaLa-lGA~aV~iGr~~l~~l~~~G~-~gv~~~l~~l~~el~~~m~~~G 335 (352)
T 3sgz_A 275 VYMDG---GVRTGTDVLKALA-LGARCIFLGRPILWGLACKGE-DGVKEVLDILTAELHRCMTLSG 335 (352)
T ss_dssp EEEES---SCCSHHHHHHHHH-TTCSEEEESHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEEEECHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhC
Confidence 35677 8999999999997 799999999965543332111 1101122556677776655544
No 53
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=96.93 E-value=0.00089 Score=48.09 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=28.6
Q ss_pred cCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 3 PSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 3 aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
++| .|.|++|+.++++ +|||||++||+++.+|
T Consensus 214 a~G---GI~~~~d~~~~~~-~GadgV~vGsai~~~~ 245 (305)
T 2nv1_A 214 AAG---GVATPADAALMMQ-LGADGVFVGSGIFKSD 245 (305)
T ss_dssp BCS---CCCSHHHHHHHHH-TTCSCEEECGGGGGSS
T ss_pred ecc---CCCCHHHHHHHHH-cCCCEEEEcHHHHcCC
Confidence 788 7999999999986 8999999999998643
No 54
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=96.91 E-value=0.0004 Score=50.69 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=28.6
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++++| +|.+.+|+.+++. .|||+|||||+++.
T Consensus 213 VIa~G---GI~~g~Dv~kala-lGAdaV~iGr~~l~ 244 (336)
T 1ypf_A 213 IIADG---GIRTNGDVAKSIR-FGATMVMIGSLFAG 244 (336)
T ss_dssp EEEES---CCCSTHHHHHHHH-TTCSEEEESGGGTT
T ss_pred EEEeC---CCCCHHHHHHHHH-cCCCEEEeChhhhc
Confidence 35677 8999999999997 79999999999995
No 55
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.90 E-value=0.00025 Score=47.52 Aligned_cols=34 Identities=9% Similarity=-0.120 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.+.+++++.++++ +|+|||++|+++..+||.|.+
T Consensus 182 g~~~~~~~~~~~~-~G~~~~~vg~a~~~~~~~~~~ 215 (237)
T 3cwo_X 182 GAGKMEHFLEAFL-AGADAALAASVFHFREIDVRE 215 (237)
T ss_dssp CCCSHHHHHHHHH-HTCSEEEESHHHHTTSSCHHH
T ss_pred CCCCHHHHHHHHH-cCcHHHhhhHHHHcCCCCHHH
Confidence 6999999999996 899999999999999988775
No 56
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=96.90 E-value=0.00036 Score=51.88 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=40.6
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCC---HHHHHHHHHHHHHHhcCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQD---IHQMIKEYLRYCVDYDNS 67 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~---~~~~~~~~l~~~~~~~~~ 67 (101)
++++| +|.+.+|+.+++. .|||+|||||+++..+.. .+... ..+.+.++++....+.+.
T Consensus 281 Via~G---GI~~~~dv~kal~-~GAdaV~iGr~~l~~~~~----~g~~~v~~~~~~l~~el~~~m~~~G~ 342 (380)
T 1p4c_A 281 VLIDS---GFRRGSDIVKALA-LGAEAVLLGRATLYGLAA----RGETGVDEVLTLLKADIDRTLAQIGC 342 (380)
T ss_dssp EEECS---SCCSHHHHHHHHH-TTCSCEEESHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEC---CCCCHHHHHHHHH-hCCcHhhehHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35677 8999999999997 899999999998754211 11111 124566677766666554
No 57
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=96.86 E-value=0.00045 Score=51.46 Aligned_cols=36 Identities=28% Similarity=0.173 Sum_probs=32.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
+++| .|.+.+|+.++++ .|||+||+||+++..|..-
T Consensus 260 ia~G---GI~~~~d~~~ala-~GAd~V~iG~~~l~~~e~~ 295 (404)
T 1eep_A 260 IADG---GIRFSGDVVKAIA-AGADSVMIGNLFAGTKESP 295 (404)
T ss_dssp EEES---CCCSHHHHHHHHH-HTCSEEEECHHHHTBTTSS
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCHHhhCHHHhcCCCCC
Confidence 5677 7999999999997 7999999999999998874
No 58
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=96.83 E-value=0.00041 Score=51.33 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=38.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCC---CHHHHHHHHHHHHHHhcCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQ---DIHQMIKEYLRYCVDYDNS 67 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~---~~~~~~~~~l~~~~~~~~~ 67 (101)
+++| +|.+.+|+.++++ .|||+|||||..+..+.. .+.. ...+.+.++++....+.+.
T Consensus 284 ia~G---GI~~~~D~~k~l~-~GAdaV~iGr~~l~~~~~----~G~~gv~~~~~~l~~el~~~m~~~G~ 344 (370)
T 1gox_A 284 FLDG---GVRRGTDVFKALA-LGAAGVFIGRPVVFSLAA----EGEAGVKKVLQMMRDEFELTMALSGC 344 (370)
T ss_dssp EEES---SCCSHHHHHHHHH-HTCSEEEECHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCEEeecHHHHHHHhh----ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5677 8999999999997 899999999965533210 1111 1124566666666555543
No 59
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=96.82 E-value=0.00046 Score=50.37 Aligned_cols=58 Identities=22% Similarity=0.093 Sum_probs=38.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCC---HHHHHHHHHHHHHHhcCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQD---IHQMIKEYLRYCVDYDNS 67 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~---~~~~~~~~l~~~~~~~~~ 67 (101)
+++| +|.|.+|+.+++. .|||+|||||+.+..+.. .+... ..+.+.++++.+..+.+.
T Consensus 255 ia~G---GI~~~~d~~k~l~-~GAd~V~iG~~~l~~~~~----~g~~~~~~~~~~~~~~l~~~m~~~G~ 315 (349)
T 1p0k_A 255 IASG---GLQDALDVAKAIA-LGASCTGMAGHFLKALTD----SGEEGLLEEIQLILEELKLIMTVLGA 315 (349)
T ss_dssp EEES---SCCSHHHHHHHHH-TTCSEEEECHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCEEEEcHHHHHHHhh----cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5677 8999999999997 699999999976655421 11111 124455566655555443
No 60
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=96.80 E-value=0.00035 Score=48.33 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=33.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+.|| .|.+++++.++++ .|||+|++|+.++.||+.+.+
T Consensus 78 i~~g---gI~~~~~~~~~~~-~Gad~V~lg~~~l~~p~~~~~ 115 (253)
T 1thf_D 78 TVGG---GIHDFETASELIL-RGADKVSINTAAVENPSLITQ 115 (253)
T ss_dssp EEES---SCCSHHHHHHHHH-TTCSEEEESHHHHHCTHHHHH
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEEEChHHHhChHHHHH
Confidence 4566 8999999999996 699999999999999987755
No 61
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=96.57 E-value=0.0015 Score=48.37 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=30.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
+++| .|.+.+|+.+++. .|||+||+||+++..+-
T Consensus 281 ia~G---GI~~~~dv~kala-lGA~~V~iG~~~l~~~e 314 (393)
T 2qr6_A 281 IADG---SIENSGDVVKAIA-CGADAVVLGSPLARAEE 314 (393)
T ss_dssp EECS---SCCSHHHHHHHHH-HTCSEEEECGGGGGSTT
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCEEEECHHHHcCCC
Confidence 4666 7999999999996 79999999999999885
No 62
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=96.57 E-value=0.00097 Score=48.41 Aligned_cols=35 Identities=17% Similarity=-0.007 Sum_probs=31.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
+++| .|.|++++.++++ .|+|||++||+.+.+|..
T Consensus 166 iaaG---GI~~~~~~~~al~-~GAdgV~vGs~~l~~~e~ 200 (332)
T 2z6i_A 166 IAAG---GIADGEGAAAGFM-LGAEAVQVGTRFVVAKES 200 (332)
T ss_dssp EEES---SCCSHHHHHHHHH-TTCSEEEECHHHHTBTTC
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCEEEecHHHhcCccc
Confidence 5667 7999999999997 799999999999999954
No 63
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=96.49 E-value=0.0019 Score=49.44 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=33.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+|.| .|.+.+|+.++++ .|||+||+||..++.|....+
T Consensus 362 ia~G---GI~~~~di~kala-~GAd~V~iG~~~l~~~e~~~~ 399 (514)
T 1jcn_A 362 IADG---GIQTVGHVVKALA-LGASTVMMGSLLAATTEAPGE 399 (514)
T ss_dssp EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTSTTSSCC
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCeeeECHHHHcCCcCCcc
Confidence 5667 7999999999997 799999999999999976554
No 64
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=96.44 E-value=0.0018 Score=48.09 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=30.7
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
++++| .|.+.+|+.++++ .|||+||+||..++.+-
T Consensus 202 VIAdG---GI~~~~di~kALa-~GAd~V~iGr~f~~t~E 236 (361)
T 3r2g_A 202 IVADG---GIKTSGDIVKALA-FGADFVMIGGMLAGSAP 236 (361)
T ss_dssp EEEES---CCCSHHHHHHHHH-TTCSEEEESGGGTTBTT
T ss_pred EEEEC---CCCCHHHHHHHHH-cCCCEEEEChHHhCCcc
Confidence 35677 7999999999997 79999999999998754
No 65
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=96.36 E-value=0.0017 Score=47.71 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=32.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
++.| .|.+++++.++++ .|+|+|++||+.+.+|..-
T Consensus 212 iaaG---GI~~~~~~~~~l~-~GAd~V~vGs~~~~~~e~~ 247 (369)
T 3bw2_A 212 VAAG---GIMRGGQIAAVLA-AGADAAQLGTAFLATDESG 247 (369)
T ss_dssp EEES---SCCSHHHHHHHHH-TTCSEEEESHHHHTSTTCC
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCEEEEChHHhCCcccC
Confidence 5667 7999999999997 7999999999999999864
No 66
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=96.35 E-value=0.0014 Score=48.27 Aligned_cols=35 Identities=9% Similarity=-0.064 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+.|++.++++++.-.||-|.+||.+|.||.+..++
T Consensus 294 ~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp~k~ 328 (358)
T 4a3u_A 294 DYTFETAQAALDSGVADAISFGRPFIGNPDLPRRF 328 (358)
T ss_dssp SCCHHHHHHHHHHTSCSEEEESHHHHHCTTHHHHH
T ss_pred CCCHHHHHHHHHcCCceEeHhhHHHHhChhHHHHH
Confidence 88999999999987899999999999999987664
No 67
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=96.17 E-value=0.0013 Score=45.27 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=33.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+.|| .|.++++++.+++ .|||+|++++.++.||+.+.+
T Consensus 78 ~v~g---gi~~~~~~~~~l~-~Gad~V~lg~~~l~~p~~~~~ 115 (244)
T 2y88_A 78 ELSG---GIRDDESLAAALA-TGCARVNVGTAALENPQWCAR 115 (244)
T ss_dssp EEES---SCCSHHHHHHHHH-TTCSEEEECHHHHHCHHHHHH
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCEEEECchHhhChHHHHH
Confidence 3566 8999999999987 799999999999999987655
No 68
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=96.17 E-value=0.0021 Score=47.76 Aligned_cols=57 Identities=25% Similarity=0.143 Sum_probs=37.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC-CCCCC---HHHHHHHHHHHHHHhcCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT-KGIQD---IHQMIKEYLRYCVDYDNS 67 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~-~~~~~---~~~~~~~~l~~~~~~~~~ 67 (101)
+++| .|++..|+.+++. .|||+|||||.. ++... .+... .-+.+.+.|+.+..+.+.
T Consensus 282 ia~G---GI~~g~Dv~KaLa-lGAdaV~ig~~~-----l~a~~~~G~~~v~~~l~~l~~eL~~~m~~~G~ 342 (365)
T 3sr7_A 282 LASG---GIRHPLDIIKALV-LGAKAVGLSRTM-----LELVEQHSVHEVIAIVNGWKEDLRLIMCALNC 342 (365)
T ss_dssp EECS---SCCSHHHHHHHHH-HTCSEEEESHHH-----HHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEEECHHH-----HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5677 8999999999997 999999999954 44221 12111 124455666655555443
No 69
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=96.17 E-value=0.0014 Score=45.24 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=32.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+++| .|.+.++++++++ .|||+|++|+.++.+|..+.+
T Consensus 79 i~~G---gi~~~~~~~~~~~-~Gad~V~lg~~~l~~p~~~~~ 116 (252)
T 1ka9_F 79 TVGG---GVRSLEDARKLLL-SGADKVSVNSAAVRRPELIRE 116 (252)
T ss_dssp EEES---SCCSHHHHHHHHH-HTCSEEEECHHHHHCTHHHHH
T ss_pred EEEC---CcCCHHHHHHHHH-cCCCEEEEChHHHhCcHHHHH
Confidence 3456 7999999999997 699999999999999987654
No 70
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=96.12 E-value=0.0015 Score=44.55 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=32.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
++|| .|.++++++++++ .|||+|+|++.++.+|+.+.+
T Consensus 81 i~~g---~i~~~~~~~~~~~-~Gad~V~i~~~~~~~~~~~~~ 118 (253)
T 1h5y_A 81 LVGG---GVRSLEDATTLFR-AGADKVSVNTAAVRNPQLVAL 118 (253)
T ss_dssp EEES---SCCSHHHHHHHHH-HTCSEEEESHHHHHCTHHHHH
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCEEEEChHHhhCcHHHHH
Confidence 4566 8999999988876 799999999999999987654
No 71
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=96.11 E-value=0.0018 Score=44.01 Aligned_cols=34 Identities=6% Similarity=0.009 Sum_probs=28.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
+++| .|.|++|+.++++ .|||+|++||+.+ +|+.
T Consensus 179 ia~G---GI~~~~~~~~~~~-~Gad~v~vG~al~-~p~~ 212 (223)
T 1y0e_A 179 IAEG---NVITPDMYKRVMD-LGVHCSVVGGAIT-RPKE 212 (223)
T ss_dssp EEES---SCCSHHHHHHHHH-TTCSEEEECHHHH-CHHH
T ss_pred EEec---CCCCHHHHHHHHH-cCCCEEEEChHHc-CcHH
Confidence 5667 7999999999996 6999999998854 4653
No 72
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=95.96 E-value=0.0031 Score=47.90 Aligned_cols=35 Identities=29% Similarity=0.234 Sum_probs=30.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
++.| .|.+.+|+.++++ .|||+||+||+.+..|-.
T Consensus 344 ia~G---GI~~~~di~kala-~GAd~V~iGr~~l~~~e~ 378 (494)
T 1vrd_A 344 IADG---GIRYSGDIVKALA-AGAESVMVGSIFAGTEEA 378 (494)
T ss_dssp EEES---CCCSHHHHHHHHH-TTCSEEEESHHHHTBTTS
T ss_pred EEEC---CcCCHHHHHHHHH-cCCCEEEECHHHhcCCcC
Confidence 4566 7999999999997 699999999999987765
No 73
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=95.89 E-value=0.002 Score=44.34 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=33.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+.|| .|.++++++.+++ .|||+|++++.++.||+.+.+
T Consensus 79 ~v~g---gI~~~~~~~~~l~-~Gad~V~lg~~~l~~p~~~~~ 116 (244)
T 1vzw_A 79 ELSG---GIRDDDTLAAALA-TGCTRVNLGTAALETPEWVAK 116 (244)
T ss_dssp EEES---SCCSHHHHHHHHH-TTCSEEEECHHHHHCHHHHHH
T ss_pred EEEC---CcCCHHHHHHHHH-cCCCEEEECchHhhCHHHHHH
Confidence 3566 8999999999887 799999999999999987655
No 74
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=95.89 E-value=0.0023 Score=43.84 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=26.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
++.| .|.|++|+.++++ .|||+|++|++.+.
T Consensus 190 ia~G---GI~s~~~~~~~~~-~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 190 IAEG---KIHSPEEAKKIND-LGVAGIVVGGAITR 220 (234)
T ss_dssp EEES---CCCSHHHHHHHHT-TCCSEEEECHHHHC
T ss_pred EEEC---CCCCHHHHHHHHH-CCCCEEEEchHHhC
Confidence 4566 7999999999996 69999999998765
No 75
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=95.87 E-value=0.0035 Score=45.24 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=30.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
+++| .|.+.+|+.++++ .|+|||++|++.+..|.
T Consensus 176 iaaG---GI~~~~~v~~al~-~GAdgV~vGs~~~~~~e 209 (328)
T 2gjl_A 176 IASG---GFADGRGLVAALA-LGADAINMGTRFLATRE 209 (328)
T ss_dssp EEES---SCCSHHHHHHHHH-HTCSEEEESHHHHTSSS
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCEEEECHHHHcCcc
Confidence 4566 7999999999997 79999999999999997
No 76
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=95.82 E-value=0.0037 Score=46.37 Aligned_cols=56 Identities=20% Similarity=0.014 Sum_probs=36.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCC---HHHHHHHHHHHHHHhcC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQD---IHQMIKEYLRYCVDYDN 66 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~---~~~~~~~~l~~~~~~~~ 66 (101)
+++| +|.+..|+.+++. .|||+||+|| ||++....++.. ..+.+.+.++.+..+.+
T Consensus 271 ia~G---GI~~~~d~~kal~-lGA~~v~ig~-----~~l~~~~~G~~~v~~~l~~l~~eL~~~m~~~G 329 (368)
T 3vkj_A 271 VGSG---GIRSGLDAAKAIA-LGADIAGMAL-----PVLKSAIEGKESLEQFFRKIIFELKAAMMLTG 329 (368)
T ss_dssp EEES---SCCSHHHHHHHHH-HTCSEEEECH-----HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCEEEEcH-----HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677 8999999999998 6999999998 555432112111 12445566665555544
No 77
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=95.77 E-value=0.0089 Score=42.46 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=27.2
Q ss_pred cCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 3 PSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 3 aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
+.| .|.|++|+.++++ .|||+|++|++++..
T Consensus 214 a~G---GI~~~e~i~~~~~-aGadgvvvGsai~~~ 244 (297)
T 2zbt_A 214 AAG---GIATPADAALMMH-LGMDGVFVGSGIFKS 244 (297)
T ss_dssp BCS---SCCSHHHHHHHHH-TTCSEEEECGGGGGS
T ss_pred eeC---CCCCHHHHHHHHH-cCCCEEEEchHHhCC
Confidence 677 7999999999986 699999999998853
No 78
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=95.77 E-value=0.005 Score=47.23 Aligned_cols=34 Identities=29% Similarity=0.208 Sum_probs=28.9
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
++|+| .|.+.+|+.++++ .|||+||+|+..++-+
T Consensus 337 VIa~G---GI~~~~di~kala-~GAd~V~iGs~f~~t~ 370 (496)
T 4fxs_A 337 VIADG---GIRFSGDISKAIA-AGASCVMVGSMFAGTE 370 (496)
T ss_dssp EEEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTBT
T ss_pred EEEeC---CCCCHHHHHHHHH-cCCCeEEecHHHhcCC
Confidence 35677 7999999999996 5999999999987744
No 79
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=95.76 E-value=0.0056 Score=45.24 Aligned_cols=35 Identities=34% Similarity=0.198 Sum_probs=30.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
+|.| .|.+.+|+.++++ .|||+||+|+..++.|--
T Consensus 211 IA~G---GI~~~~di~kala-~GAd~V~vGs~~~~t~Es 245 (361)
T 3khj_A 211 IADG---GIRYSGDIGKALA-VGASSVMIGSILAGTEES 245 (361)
T ss_dssp EEES---CCCSHHHHHHHHH-HTCSEEEESTTTTTBTTS
T ss_pred EEEC---CCCCHHHHHHHHH-cCCCEEEEChhhhcCCcC
Confidence 5677 7999999999997 599999999999987753
No 80
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=95.60 E-value=0.0043 Score=43.42 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=29.7
Q ss_pred ccCCCCCCCC--CHHHHHHHHH---hcCCCeeeeecccccCCCccC
Q psy4403 2 DPSGGSKEIV--DYGGILKFKA---DTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 2 ~aNGgsGDI~--s~~d~~~~~~---~tg~dgvMigRgAl~nP~iF~ 42 (101)
++.| .|. +.+|+.++.+ .+|++||++||+++.+|+++.
T Consensus 206 va~G---Gi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~ 248 (273)
T 2qjg_A 206 VVAG---GPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVG 248 (273)
T ss_dssp EEEC---CSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHH
T ss_pred EEEe---CCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHH
Confidence 4566 688 4889666554 689999999999999987654
No 81
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=95.58 E-value=0.0072 Score=46.24 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=29.7
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
++|.| .|.+.+|+.++++ .|||+||+|+..++-+-
T Consensus 335 VIa~G---GI~~~~di~kal~-~GAd~V~vGs~~~~~~E 369 (490)
T 4avf_A 335 LIADG---GIRFSGDLAKAMV-AGAYCVMMGSMFAGTEE 369 (490)
T ss_dssp EEEES---CCCSHHHHHHHHH-HTCSEEEECTTTTTBTT
T ss_pred EEEeC---CCCCHHHHHHHHH-cCCCeeeecHHHhcCCC
Confidence 35677 7999999999996 59999999999887553
No 82
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=95.51 E-value=0.0056 Score=44.40 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=31.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
++.| .|.|.+|+.++++ .|++||++|++.+..|..
T Consensus 180 iaaG---GI~~~~dv~~al~-~GA~gV~vGs~~~~~~e~ 214 (326)
T 3bo9_A 180 IAAG---GIADGRGMAAAFA-LGAEAVQMGTRFVASVES 214 (326)
T ss_dssp EEES---SCCSHHHHHHHHH-HTCSEEEESHHHHTBSSC
T ss_pred EEEC---CCCCHHHHHHHHH-hCCCEEEechHHHcCccc
Confidence 4667 7999999999997 799999999999998874
No 83
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=95.50 E-value=0.0075 Score=45.29 Aligned_cols=35 Identities=34% Similarity=0.239 Sum_probs=30.3
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
++|.| .|.+.+|+.++++ .||++||+|+..+.-+-
T Consensus 249 VIA~G---GI~~~~di~kala-lGAd~V~vGt~f~~t~E 283 (400)
T 3ffs_A 249 IIADG---GIRYSGDIGKALA-VGASSVMIGSILAGTEE 283 (400)
T ss_dssp EEEES---CCCSHHHHHHHHT-TTCSEEEECGGGTTBTT
T ss_pred EEecC---CCCCHHHHHHHHH-cCCCEEEEChHHhcCCC
Confidence 35677 7999999999996 69999999999988664
No 84
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=94.99 E-value=0.0059 Score=42.67 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.|+|+++++++. .|||+|.+|-++..||.++.+
T Consensus 188 GI~t~e~a~~~~--~gAD~VVVGSa~v~~p~~~~~ 220 (228)
T 3vzx_A 188 GIKDAETAKQYA--EHADVIVVGNAVYEDFDRALK 220 (228)
T ss_dssp SCCSHHHHHHHH--TTCSEEEECTHHHHCHHHHHH
T ss_pred CCCCHHHHHHHH--hCCCEEEEChHHhcCHHHHHH
Confidence 799999999998 399999999999999987765
No 85
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=94.93 E-value=0.014 Score=44.94 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=28.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
+|.| .|.+.+|+.++++ .||++||+||..++-.-
T Consensus 363 Ia~G---GI~~~~di~kala-~GA~~V~vGs~~~~~~e 396 (511)
T 3usb_A 363 IADG---GIKYSGDMVKALA-AGAHVVMLGSMFAGVAE 396 (511)
T ss_dssp EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTBTT
T ss_pred EEeC---CCCCHHHHHHHHH-hCchhheecHHHhcCcc
Confidence 5667 7999999999996 69999999997655443
No 86
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=94.75 E-value=0.018 Score=42.70 Aligned_cols=35 Identities=29% Similarity=0.181 Sum_probs=29.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
+|.| .|.+.+|+.+++. .|||+||+|+..++-+--
T Consensus 215 IA~G---GI~~~~di~kala-~GAd~V~vGs~f~~t~Es 249 (366)
T 4fo4_A 215 IADG---GIRFSGDISKAIA-AGASCVMVGSMFAGTEEA 249 (366)
T ss_dssp EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTBTTS
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEEEChHhhcCCCC
Confidence 5667 7999999999997 599999999998886653
No 87
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=94.68 E-value=0.0094 Score=41.86 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC-ccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS-IFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~-iF~~ 43 (101)
.|+|+++++++++ |||+|.+|-++..+|. ++.+
T Consensus 190 GI~t~e~a~~~~~--gAd~VIVGSa~v~~~~~~~~~ 223 (240)
T 1viz_A 190 GIKDAETAKQYAE--HADVIVVGNAVYEDFDRALKT 223 (240)
T ss_dssp SCCSHHHHHHHHT--TCSEEEECTHHHHCHHHHHTH
T ss_pred ccCCHHHHHHHHh--CCCEEEEChHHHhCHHHHHHH
Confidence 6999999999886 9999999999999998 6655
No 88
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=94.67 E-value=0.011 Score=42.74 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccC--CCccCCC
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDN--CSIFSPT 44 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n--P~iF~~~ 44 (101)
|.|+|++|++++++ .|||+|.+|.+++.| |.++.++
T Consensus 234 GGIrs~Eda~~ll~-aGAD~VVVGSAav~d~~Pelv~e~ 271 (286)
T 3vk5_A 234 GNVRSGRQVTEYLD-SGADYVGFAGALEQPDWRSALAEI 271 (286)
T ss_dssp SSCCSHHHHHHHHH-TTCSEEEESGGGSSTTHHHHHHHH
T ss_pred eCCCCHHHHHHHHH-cCCCEEEECchhhcCCCHHHHHHH
Confidence 37999999999995 799999999999999 6666553
No 89
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=94.52 E-value=0.016 Score=41.83 Aligned_cols=49 Identities=8% Similarity=0.140 Sum_probs=35.8
Q ss_pred cCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy4403 3 PSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYD 65 (101)
Q Consensus 3 aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~ 65 (101)
+.| .|.+++|+.++++ .|||+|++|++++..| .+.+.++++.+...+|.
T Consensus 214 A~G---GI~t~~dv~~~~~-~GAdgVlVGsai~~a~----------dp~~~~~~l~~ai~~~~ 262 (297)
T 4adt_A 214 AAG---GIATPADAAMCMQ-LGMDGVFVGSGIFESE----------NPQKMASSIVMAVSNFN 262 (297)
T ss_dssp EES---CCCSHHHHHHHHH-TTCSCEEESHHHHTSS----------CHHHHHHHHHHHHHTTT
T ss_pred ecC---CCCCHHHHHHHHH-cCCCEEEEhHHHHcCC----------CHHHHHHHHHHHHHhhC
Confidence 667 7999999999986 5999999999987643 22345566665554443
No 90
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=94.36 E-value=0.0087 Score=42.13 Aligned_cols=30 Identities=7% Similarity=0.033 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.|.|++|+.++++ |++||.||.+.+..|.+
T Consensus 216 GI~s~~dv~~l~~--Ga~gvlVGsAl~~~~d~ 245 (254)
T 1vc4_A 216 GYSRKEELKALEG--LFDAVLIGTSLMRAPDL 245 (254)
T ss_dssp CCCSHHHHHTTTT--TCSEEEECHHHHTSSCH
T ss_pred CCCCHHHHHHHHc--CCCEEEEeHHHcCCCCH
Confidence 6999999999987 99999999999987754
No 91
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=94.25 E-value=0.034 Score=42.05 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=31.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
++.| .|.+.+|+.++++ .|+++||+||..+..+....+
T Consensus 340 ia~G---Gi~~~~di~kal~-~GA~~v~vG~~~~~~~e~~~~ 377 (491)
T 1zfj_A 340 IADG---GIKYSGDIVKALA-AGGNAVMLGSMFAGTDEAPGE 377 (491)
T ss_dssp EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTBSSCCCC
T ss_pred EeeC---CCCCHHHHHHHHH-cCCcceeeCHHhhCCCcCcce
Confidence 4556 7999999999996 799999999999987765544
No 92
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=93.97 E-value=0.015 Score=40.34 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccc-c--CCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQ-D--NCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl-~--nP~iF~~ 43 (101)
.|.+.+++.++++ .|||+|++|+.++ . +|..+.+
T Consensus 82 gi~~~~~i~~~~~-~Gad~v~lg~~~~~~~~~~~~~~~ 118 (266)
T 2w6r_A 82 GAGKMEHFLEAFL-AGADKALAASVFHFREIDMRELKE 118 (266)
T ss_dssp CCCSTHHHHHHHH-HTCSEEECCCCC------CHHHHH
T ss_pred CCCCHHHHHHHHH-cCCcHhhhhHHHHhCCCCHHHHHH
Confidence 7999999999885 7999999999999 6 8987755
No 93
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=93.82 E-value=0.023 Score=39.73 Aligned_cols=30 Identities=7% Similarity=0.005 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.|+|+++++++.+ |||+|.+|-++..+|-=
T Consensus 198 GI~s~e~a~~~~~--gAd~VIVGSa~v~~~~~ 227 (234)
T 2f6u_A 198 GIDSREKAREMLR--YADTIIVGNVIYEKGID 227 (234)
T ss_dssp CCCSHHHHHHHHH--HSSEEEECHHHHHHCHH
T ss_pred cCCCHHHHHHHHh--CCCEEEEChHHHhCHHH
Confidence 6999999999887 99999999999998853
No 94
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=93.71 E-value=0.016 Score=40.67 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.|.|+++++++.+ |+|+|.+|-++..||-.|.++
T Consensus 194 GI~~~e~a~~~~~--gAD~VVVGSai~~~~~~~~e~ 227 (235)
T 3w01_A 194 GISSEQQATEMAA--IADTIIVGDIIYKDIKKALKT 227 (235)
T ss_dssp CCCSHHHHHHHHT--TSSEEEECTHHHHCHHHHHHT
T ss_pred CcCCHHHHHHHHc--CCCEEEECCceecCHHHHHHH
Confidence 7999999999886 999999999999999887764
No 95
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=93.64 E-value=0.014 Score=43.52 Aligned_cols=40 Identities=8% Similarity=0.019 Sum_probs=33.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
+++| .+.+.+++.+.+..-+||-|.+||.+|.||.+..++
T Consensus 322 i~~G---~~~~~~~~~~~~~~~~aDlV~~gR~~iadPdl~~k~ 361 (400)
T 4gbu_A 322 IRAG---NFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRL 361 (400)
T ss_dssp EEES---SCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHH
T ss_pred EEeC---CCCChHHHHHHHHcCCCeEhHHHHHHHHCcHHHHHH
Confidence 4556 788877777777777899999999999999988765
No 96
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=93.00 E-value=0.049 Score=38.85 Aligned_cols=30 Identities=7% Similarity=-0.051 Sum_probs=25.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
++.| .|.+++|+.++++ .|||||++|-+..
T Consensus 191 I~eG---GI~TPsDAa~Ame-LGAdgVlVgSAI~ 220 (265)
T 1wv2_A 191 LVDA---GVGTASDAAIAME-LGCEAVLMNTAIA 220 (265)
T ss_dssp EEES---CCCSHHHHHHHHH-HTCSEEEESHHHH
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEEEChHHh
Confidence 4556 6999999999997 5999999998874
No 97
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=92.73 E-value=0.072 Score=37.85 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
|.|++|+.++. ..|+|||.||...|.+|.
T Consensus 213 I~t~~dv~~l~-~~G~~a~LVGealmr~~d 241 (258)
T 4a29_A 213 ISERNEIEELR-KLGVNAFLISSSLMRNPE 241 (258)
T ss_dssp SCCHHHHHHHH-HTTCCEEEECHHHHHCTT
T ss_pred CCCHHHHHHHH-HCCCCEEEECHHHhCCCc
Confidence 99999998876 589999999999999874
No 98
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=92.69 E-value=0.035 Score=37.53 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=27.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
++-| .| +++++.++++ +|+++|.+|++.+.+|
T Consensus 168 ia~G---GI-~~~nv~~~~~-~Ga~gv~vgs~i~~~~ 199 (221)
T 1yad_A 168 IAIG---GM-TPDRLRDVKQ-AGADGIAVMSGIFSSA 199 (221)
T ss_dssp EEES---SC-CGGGHHHHHH-TTCSEEEESHHHHTSS
T ss_pred EEEC---CC-CHHHHHHHHH-cCCCEEEEhHHhhCCC
Confidence 3456 69 9999999997 8999999999998754
No 99
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=92.49 E-value=0.042 Score=38.22 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.|+|.+|++++++ .|+|-|.|+-.|+.||.++.+
T Consensus 83 GIrs~e~~~~~l~-~GadkVii~t~a~~~p~li~e 116 (243)
T 4gj1_A 83 GIRSKEEVKALLD-CGVKRVVIGSMAIKDATLCLE 116 (243)
T ss_dssp SCCCHHHHHHHHH-TTCSEEEECTTTTTCHHHHHH
T ss_pred ccccHHHHHHHHH-cCCCEEEEccccccCCchHHH
Confidence 6999999999995 899999999999999998754
No 100
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=92.35 E-value=0.065 Score=38.22 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.|.|++|+.++. ..|++||.||.+.+..|.+
T Consensus 228 GI~t~edv~~l~-~~Ga~gvLVG~almr~~d~ 258 (272)
T 3tsm_A 228 GIFTHEDCLRLE-KSGIGTFLIGESLMRQHDV 258 (272)
T ss_dssp SCCSHHHHHHHH-TTTCCEEEECHHHHTSSCH
T ss_pred CCCCHHHHHHHH-HcCCCEEEEcHHHcCCcCH
Confidence 599999998887 6899999999999987754
No 101
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=91.10 E-value=0.12 Score=36.76 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.|.|++|+.++. ..|++||.||.+.+..|
T Consensus 221 GI~t~edv~~l~-~~GadgvlVGsal~~a~ 249 (272)
T 3qja_A 221 GVRGTADLLAYA-GAGADAVLVGEGLVTSG 249 (272)
T ss_dssp CCCSHHHHHHHH-HTTCSEEEECHHHHTCS
T ss_pred CCCCHHHHHHHH-HcCCCEEEEcHHHhCCC
Confidence 699999999887 57999999999998655
No 102
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=91.02 E-value=0.13 Score=39.01 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=27.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+|.| .|.+..|+.+.+. .|||+||+|+..+.
T Consensus 332 ia~G---Gi~~~~di~kala-lGA~~v~~g~~~~~ 362 (486)
T 2cu0_A 332 IADG---GIRYSGDIVKAIA-AGADAVMLGNLLAG 362 (486)
T ss_dssp EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTT
T ss_pred EecC---CCCCHHHHHHHHH-cCCCceeeChhhhc
Confidence 4666 6999999999996 99999999998774
No 103
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=91.01 E-value=0.14 Score=37.54 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=27.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
++-| .|.+..|+.+++. .|||+||+||..+.-+
T Consensus 227 Ia~G---GI~~g~di~kAla-lGA~~V~vG~~fl~~~ 259 (351)
T 2c6q_A 227 ISDG---GCSCPGDVAKAFG-AGADFVMLGGMLAGHS 259 (351)
T ss_dssp EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTBT
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCceeccHHHhcCc
Confidence 4455 6999999999995 6999999999888643
No 104
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=90.32 E-value=0.063 Score=35.71 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.|. ++++.++++ +|++||++|++.+..|
T Consensus 170 GI~-~~nv~~~~~-~Ga~gv~vgs~i~~~~ 197 (215)
T 1xi3_A 170 GIN-KDNAREVLK-TGVDGIAVISAVMGAE 197 (215)
T ss_dssp SCC-TTTHHHHHT-TTCSEEEESHHHHTSS
T ss_pred CcC-HHHHHHHHH-cCCCEEEEhHHHhCCC
Confidence 688 999999875 8999999999998765
No 105
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=90.03 E-value=0.14 Score=39.13 Aligned_cols=31 Identities=23% Similarity=0.081 Sum_probs=26.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+|-| .|++..|+.+++. .||++||+|+..++
T Consensus 356 ia~G---Gi~~~~di~kAla-lGA~~V~iG~~~~~ 386 (503)
T 1me8_A 356 CSDG---GIVYDYHMTLALA-MGADFIMLGRYFAR 386 (503)
T ss_dssp EEES---CCCSHHHHHHHHH-TTCSEEEESHHHHT
T ss_pred EEeC---CCCCHHHHHHHHH-cCCCEEEECchhhc
Confidence 4556 7999999999996 69999999998765
No 106
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=89.91 E-value=0.18 Score=34.57 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCee
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSV 28 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgv 28 (101)
++|| +|+|++|+.++++ +|||-|
T Consensus 179 ia~G---GI~t~~da~~~l~-aGA~~i 201 (225)
T 1mzh_A 179 KASG---GIRDLETAISMIE-AGADRI 201 (225)
T ss_dssp EEES---SCCSHHHHHHHHH-TTCSEE
T ss_pred EEEC---CCCCHHHHHHHHH-hCchHH
Confidence 5677 8999999999997 899944
No 107
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=89.43 E-value=0.27 Score=34.48 Aligned_cols=28 Identities=14% Similarity=0.025 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|.+++|+.++++ .|||||.+|.+.+..
T Consensus 186 GI~t~eda~~~~~-~GAdgViVGSAi~~a 213 (264)
T 1xm3_A 186 GIGSPKDAAYAME-LGADGVLLNTAVSGA 213 (264)
T ss_dssp CCCSHHHHHHHHH-TTCSEEEESHHHHTS
T ss_pred CCCCHHHHHHHHH-cCCCEEEEcHHHhCC
Confidence 5999999999875 799999999986543
No 108
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=86.60 E-value=0.18 Score=35.44 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.|.|++|+.++++. +++|.||.+.+..|.+
T Consensus 210 GI~t~edv~~~~~~--a~avLVG~aimr~~d~ 239 (251)
T 1i4n_A 210 GIKDPRELKDLRGK--VNAVLVGTSIMKAENP 239 (251)
T ss_dssp CCCCGGGHHHHTTT--CSEEEECHHHHHCSSH
T ss_pred CCCCHHHHHHHHHh--CCEEEEcHHHcCCcCH
Confidence 59999999999875 9999999999986654
No 109
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=86.27 E-value=0.42 Score=35.12 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
+|.|++|++++.+ .|||+|++++|.
T Consensus 218 gi~t~e~a~~~~~-~Gad~i~vg~Gg 242 (393)
T 2qr6_A 218 GVNDYTTALHMMR-TGAVGIIVGGGE 242 (393)
T ss_dssp CCCSHHHHHHHHT-TTCSEEEESCCS
T ss_pred CcCCHHHHHHHHH-cCCCEEEECCCc
Confidence 7999999988875 999999999865
No 110
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=85.68 E-value=0.42 Score=34.07 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
.|.+++|+..+++ .|||||++|-|..
T Consensus 186 GI~tpsDAa~Ame-LGAdgVlVgSAI~ 211 (268)
T 2htm_A 186 GLGLPSHAAEVME-LGLDAVLVNTAIA 211 (268)
T ss_dssp CCCSHHHHHHHHH-TTCCEEEESHHHH
T ss_pred CCCCHHHHHHHHH-cCCCEEEEChHHh
Confidence 6999999999996 8999999998875
No 111
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=84.98 E-value=0.69 Score=32.40 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=26.4
Q ss_pred CCCC--CHHHHHHHHH---hcCCCeeeeecccccCC
Q psy4403 8 KEIV--DYGGILKFKA---DTNASSVMIARAAQDNC 38 (101)
Q Consensus 8 GDI~--s~~d~~~~~~---~tg~dgvMigRgAl~nP 38 (101)
|.|. |.+|+.++.+ +.|++|+-+||.++..|
T Consensus 203 GGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~ 238 (263)
T 1w8s_A 203 GGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRR 238 (263)
T ss_dssp CCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTST
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCc
Confidence 3688 9999998885 58999999999988765
No 112
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=84.17 E-value=0.74 Score=31.30 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.|.+++++..+. ..|+|||.+|.+.+.-+
T Consensus 178 GI~~~~~~~~~~-~~gaDgvlVGsAi~~~~ 206 (219)
T 2h6r_A 178 GISKGEDVKAAL-DLGAEGVLLASGVVKAK 206 (219)
T ss_dssp SCCSHHHHHHHH-TTTCCCEEESHHHHTCS
T ss_pred CcCcHHHHHHHh-hCCCCEEEEcHHHhCcc
Confidence 699999998875 57999999998888644
No 113
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=82.35 E-value=0.63 Score=35.39 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.|.|++|+.++.+. ++||.||.+.+..|.+
T Consensus 216 GI~t~edv~~~~~~--a~avLVGealmr~~d~ 245 (452)
T 1pii_A 216 GINTYAQVRELSHF--ANGFLIGSALMAHDDL 245 (452)
T ss_dssp CCCCHHHHHHHTTT--CSEEEECHHHHTCSCH
T ss_pred CCCCHHHHHHHHHh--CCEEEEcHHHcCCcCH
Confidence 59999999999876 9999999999998764
No 114
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=82.34 E-value=0.28 Score=32.86 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|. ++++.++++ +|++||.+|++.+..
T Consensus 180 GI~-~~nv~~~~~-~Ga~gv~vgs~i~~~ 206 (227)
T 2tps_A 180 GIT-IDNAAPVIQ-AGADGVSMISAISQA 206 (227)
T ss_dssp SCC-TTTSHHHHH-TTCSEEEESHHHHTS
T ss_pred CCC-HHHHHHHHH-cCCCEEEEhHHhhcC
Confidence 687 999998875 899999999998764
No 115
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}
Probab=81.18 E-value=0.71 Score=33.72 Aligned_cols=36 Identities=6% Similarity=-0.000 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.+.++++++++++...||.|++-.+.++.++-+.++
T Consensus 249 ~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 284 (384)
T 2pgw_A 249 AAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKA 284 (384)
T ss_dssp TCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred CcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHH
Confidence 899999999999999999999999999999977664
No 116
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=80.09 E-value=1.5 Score=30.25 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.|.+.+|+..+. ..|+||+.||++.|.-+.
T Consensus 184 sV~~~n~~~~~~-~~~vDG~LVG~a~l~a~~ 213 (225)
T 1hg3_A 184 GISTGEDVKKAI-ELGTVGVLLASGVTKAKD 213 (225)
T ss_dssp SCCSHHHHHHHH-HTTCSEEEESHHHHTCSS
T ss_pred CCCcHHHHHHHH-hCCCCEEEeCHHHHCCcC
Confidence 689999987765 679999999999986543
No 117
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*
Probab=79.91 E-value=0.78 Score=32.38 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.| +++++.+++.+.++||++||++.|.
T Consensus 216 SV-~~~N~~~l~~~~diDG~LVGgASL~ 242 (254)
T 3m9y_A 216 SV-KPNNIKEYMAQTDIDGALVGGASLK 242 (254)
T ss_dssp CC-CTTTHHHHHTSTTCCEEEESGGGSS
T ss_pred Cc-CHHHHHHHHcCCCCCeEEeeHHhhC
Confidence 56 8899999999999999999999874
No 118
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=79.81 E-value=1.6 Score=30.17 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.|.+.+|+..+. ..|+||+.||.+.|.-+
T Consensus 181 sV~~~n~~~~~~-~~giDG~LVG~a~l~a~ 209 (226)
T 1w0m_A 181 GIESGDDVAAAL-RLGTRGVLLASAAVKAK 209 (226)
T ss_dssp SCCSHHHHHHHH-HTTCSEEEECHHHHTCS
T ss_pred CCCcHHHHHHHH-hCCCCEEEECHHHHCCc
Confidence 699999987765 67999999999998644
No 119
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=79.03 E-value=0.67 Score=30.68 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|. ++++.++. +.|+|+|.+||+....
T Consensus 167 GI~-~~~~~~~~-~~Gad~vvvGsai~~~ 193 (211)
T 3f4w_A 167 GIS-SQTVKDYA-LLGPDVVIVGSAITHA 193 (211)
T ss_dssp SCC-TTTHHHHH-TTCCSEEEECHHHHTC
T ss_pred CCC-HHHHHHHH-HcCCCEEEECHHHcCC
Confidence 584 89998887 5799999999987654
No 120
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=78.98 E-value=1.4 Score=30.34 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|.|++++.++.+ .|+|+|.+|.+....
T Consensus 209 GI~~~e~~~~~~~-~GAdgvvVGSai~~~ 236 (262)
T 1rd5_A 209 GISKPEHVKQIAQ-WGADGVIIGSAMVRQ 236 (262)
T ss_dssp CCCSHHHHHHHHH-TTCSEEEECHHHHHH
T ss_pred CcCCHHHHHHHHH-cCCCEEEEChHHHhH
Confidence 6999999999886 899999999987654
No 121
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=77.80 E-value=1.4 Score=29.82 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|.+.+++.++++ .|+|+|.+|.++...
T Consensus 199 GI~~~e~i~~~~~-~Gad~vivGsai~~~ 226 (248)
T 1geq_A 199 GVSKREHVVSLLK-EGANGVVVGSALVKI 226 (248)
T ss_dssp CCCSHHHHHHHHH-TTCSEEEECHHHHHH
T ss_pred ecCCHHHHHHHHH-cCCCEEEEcHHHHhh
Confidence 6999999999885 799999999998765
No 122
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=75.31 E-value=1.1 Score=30.92 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=22.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA 34 (101)
++.| .+.|.+|++++. .+++||.+|++.
T Consensus 200 iasG---Gv~~~~Dl~~l~--~~~~gvivg~Al 227 (243)
T 4gj1_A 200 QASG---GVASLKDLENLK--GICSGVIVGKAL 227 (243)
T ss_dssp EEES---CCCSHHHHHHTT--TTCSEEEECHHH
T ss_pred EEEc---CCCCHHHHHHHH--ccCchhehHHHH
Confidence 3556 799999999873 569999999974
No 123
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=74.73 E-value=0.95 Score=30.04 Aligned_cols=27 Identities=0% Similarity=0.027 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|. .+++.++++ .|+++|.+|++.+..
T Consensus 156 GI~-~~~i~~~~~-~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 156 GVT-PENLAQWID-AGCAGAGLGSDLYRA 182 (212)
T ss_dssp SCC-TTTHHHHHH-HTCSEEEECTTTCCT
T ss_pred CCC-HHHHHHHHH-cCCCEEEEChHHhCC
Confidence 586 899999886 899999999997654
No 124
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=73.54 E-value=1.5 Score=30.95 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|.|++++.++ .+||||.+|.+....
T Consensus 210 GI~t~e~a~~~---~~ADgVIVGSAi~~~ 235 (271)
T 1ujp_A 210 GVSGKATAAQA---AVADGVVVGSALVRA 235 (271)
T ss_dssp CCCSHHHHHHH---TTSSEEEECHHHHHH
T ss_pred CCCCHHHHHHh---cCCCEEEEChHHhcc
Confidence 69999999997 789999999887754
No 125
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=73.09 E-value=2 Score=33.60 Aligned_cols=28 Identities=36% Similarity=0.332 Sum_probs=24.5
Q ss_pred CccCCCCCCCCCHHHHHHHHHhcCCCeeeeec
Q psy4403 1 MDPSGGSKEIVDYGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigR 32 (101)
++|-| .|.+..|+.+.+. .|+|.||+|.
T Consensus 387 vIADG---GI~~sGDi~KAla-aGAd~VMlGs 414 (556)
T 4af0_A 387 CIADG---GIGNIGHIAKALA-LGASAVMMGG 414 (556)
T ss_dssp EEEES---CCCSHHHHHHHHH-TTCSEEEEST
T ss_pred EEecC---CcCcchHHHHHhh-cCCCEEEEch
Confidence 35677 7999999999995 8999999996
No 126
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=72.00 E-value=1.4 Score=34.15 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=10.9
Q ss_pred CCeeeeecccccC
Q psy4403 25 ASSVMIARAAQDN 37 (101)
Q Consensus 25 ~dgvMigRgAl~n 37 (101)
+||||||||=|+-
T Consensus 287 sDgIMVARGDLgv 299 (526)
T 4drs_A 287 SDGIMVARGDLGM 299 (526)
T ss_dssp SSEEEEECTTHHH
T ss_pred ccEEEEECCcccc
Confidence 5999999997664
No 127
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=70.75 E-value=2.3 Score=28.74 Aligned_cols=29 Identities=10% Similarity=-0.078 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
=|.|.||+.+++ .-|+++|..+.-.|++-
T Consensus 158 lI~~~edv~~al-~aGA~aVsTs~~~LW~~ 186 (192)
T 3kts_A 158 LIETSEQVNQVI-ASGAIAVTTSNKHLWEG 186 (192)
T ss_dssp SCCSHHHHHHHH-TTTEEEEEECCGGGGTT
T ss_pred CcCCHHHHHHHH-HcCCeEEEeCCHHHhCc
Confidence 799999999999 48999999999888763
No 128
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}
Probab=69.29 E-value=2.4 Score=29.74 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.. +++.++++..++||+.+|++.|.
T Consensus 212 SV~~-~N~~~l~~~~diDG~LVGgAsL~ 238 (250)
T 1yya_A 212 SVNP-KNFADLLSMPNVDGGLVGGASLE 238 (250)
T ss_dssp SCCT-TTHHHHHTSTTCCEEEESGGGSS
T ss_pred CCCH-HHHHHHHcCCCCCeeEeeHHHhC
Confidence 4444 88999999999999999998874
No 129
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}
Probab=68.94 E-value=2.5 Score=30.91 Aligned_cols=36 Identities=11% Similarity=-0.041 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.+.+++|++++++...||.|++-.+..+.++-+.++
T Consensus 245 ~~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~~~i 280 (378)
T 3eez_A 245 CLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARM 280 (378)
T ss_dssp TCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHH
Confidence 899999999999999999999999999999876654
No 130
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=68.62 E-value=2.6 Score=30.56 Aligned_cols=36 Identities=3% Similarity=-0.107 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.+.|+++++++++...||.|+|-.+-++-++-+.++
T Consensus 250 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i 285 (371)
T 2ovl_A 250 NLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKV 285 (371)
T ss_dssp TCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHH
Confidence 899999999999999999999999988888766553
No 131
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=68.43 E-value=2.6 Score=29.64 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.. +++.+++.+-++||+.+|++.|.
T Consensus 212 SV~~-~N~~~l~~~~diDG~LVGgAsL~ 238 (252)
T 2btm_A 212 SVKP-DNIRDFLAQQQIDGALVGGASLE 238 (252)
T ss_dssp SCCT-TTHHHHHTSTTCCEEEESGGGSS
T ss_pred CCCH-HHHHHHHcCCCCCeeEecHHHhC
Confidence 4444 89999999999999999998874
No 132
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=67.63 E-value=2.5 Score=29.79 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.. +++.++++.-++||+.+|++.|.
T Consensus 214 SV~~-~N~~~l~~~~diDG~LVGgAsL~ 240 (256)
T 1aw2_A 214 SVKP-ENAAAYFAQPDIDGALVGGAALD 240 (256)
T ss_dssp CCCT-TTHHHHTTSTTCCEEEESGGGGC
T ss_pred CCCH-HHHHHHHcCCCCCeeeecHHHhC
Confidence 4554 88999999999999999998874
No 133
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=65.76 E-value=4.1 Score=29.57 Aligned_cols=35 Identities=11% Similarity=-0.026 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.+.++++++++++...||.|++-.+-++-++-+.+
T Consensus 245 ~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ 279 (379)
T 2rdx_A 245 CVTGLHMAQRIVADRGAEICCLKISNLGGLSKARR 279 (379)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHH
T ss_pred CcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHH
Confidence 89999999999999999999999888888775544
No 134
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*
Probab=65.68 E-value=3.3 Score=29.01 Aligned_cols=27 Identities=7% Similarity=0.101 Sum_probs=23.3
Q ss_pred CHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 12 DYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
+++++.+++++.++||+.+|++.|. +.
T Consensus 213 ~~~N~~~l~~~~diDG~LVGgAsL~-~~ 239 (248)
T 1o5x_A 213 NTENCSSLIQQEDIDGFLVGNASLK-ES 239 (248)
T ss_dssp CTTTHHHHHTSTTCCEEEECGGGGS-TT
T ss_pred CHHHHHHHHcCCCCCeeEeeHHHHH-HH
Confidence 4558999999999999999999998 53
No 135
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=65.27 E-value=4.3 Score=29.15 Aligned_cols=35 Identities=6% Similarity=-0.092 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.+.|+++++++++...||.|+|-.+-++-++-+.+
T Consensus 248 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~ 282 (359)
T 1mdl_A 248 NWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIR 282 (359)
T ss_dssp TCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCEEeecchhhCCHHHHHH
Confidence 89999999999999999999998888877765544
No 136
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=65.06 E-value=1.6 Score=30.32 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.| +++++.+++ .+|++||.++++.+..|
T Consensus 199 GI-~~~ni~~~~-~aGa~gvav~sai~~a~ 226 (243)
T 3o63_A 199 GI-NAQRLPAVL-DAGARRIVVVRAITSAD 226 (243)
T ss_dssp SC-CTTTHHHHH-HTTCCCEEESHHHHTCS
T ss_pred CC-CHHHHHHHH-HcCCCEEEEeHHHhCCC
Confidence 58 899998887 59999999999987643
No 137
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A
Probab=64.99 E-value=3.5 Score=28.99 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.+++.+.++..+-++||++||++.|. | =|.+
T Consensus 216 V~~~N~~~l~~~~diDG~LVGgASL~-~-~F~~ 246 (255)
T 3qst_A 216 VKPNNCNELAACPDVDGFLVGGASLE-A-GFIN 246 (255)
T ss_dssp CCTTTHHHHHHSTTCCEEEECGGGGS-T-THHH
T ss_pred cCHhHHHHHhcCCCCCEEEeeHHHhh-H-HHHH
Confidence 45566778888899999999999998 7 4543
No 138
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=64.67 E-value=4.5 Score=28.05 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|.|++++.++++ .|||+|.+|.+....
T Consensus 213 GI~t~e~~~~~~~-agAD~vVVGSai~~~ 240 (268)
T 1qop_A 213 GISSPEQVSAAVR-AGAAGAISGSAIVKI 240 (268)
T ss_dssp SCCSHHHHHHHHH-TTCSEEEECHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCEEEEChHHhhh
Confidence 5999999999774 689999999987643
No 139
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=64.50 E-value=3 Score=31.86 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=11.3
Q ss_pred CCeeeeecccccC
Q psy4403 25 ASSVMIARAAQDN 37 (101)
Q Consensus 25 ~dgvMigRgAl~n 37 (101)
+||||||||=|+-
T Consensus 247 sDgImVaRGDLgv 259 (461)
T 3qtg_A 247 SDYVVVARGDLGL 259 (461)
T ss_dssp CSEEEEEHHHHTT
T ss_pred cccEEEccccccc
Confidence 6999999998864
No 140
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=64.13 E-value=2.9 Score=32.24 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=10.1
Q ss_pred CCeeeeeccccc
Q psy4403 25 ASSVMIARAAQD 36 (101)
Q Consensus 25 ~dgvMigRgAl~ 36 (101)
+||||||||=|+
T Consensus 256 sDgImVaRGDLg 267 (499)
T 3hqn_D 256 SDGIMVARGDLG 267 (499)
T ss_dssp SSEEEEEHHHHH
T ss_pred CCcEEEcccccc
Confidence 699999998664
No 141
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}
Probab=63.85 E-value=3.7 Score=29.18 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~ 42 (101)
.+++.+.++..+-++||++||++.|. | =|.
T Consensus 235 V~~~N~~el~~~~diDG~LVGgASL~-~-~F~ 264 (271)
T 3krs_A 235 VTPDNCNELIKCADIDGFLVGGASLK-P-TFA 264 (271)
T ss_dssp CCTTTHHHHHHSTTCCEEEESGGGGS-T-THH
T ss_pred cCHHHHHHHhcCCCCCEEEeeHHhhh-H-HHH
Confidence 45666778888899999999999998 7 354
No 142
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=62.84 E-value=3.9 Score=29.33 Aligned_cols=31 Identities=6% Similarity=-0.127 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHhcC-CCeeeeecccccCC
Q psy4403 8 KEIVDYGGILKFKADTN-ASSVMIARAAQDNC 38 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg-~dgvMigRgAl~nP 38 (101)
|-|.+++|++.+++.|. |+|+..|-+...=|
T Consensus 235 GpIstpeDv~~~l~~t~G~~G~~gASsier~p 266 (286)
T 2p10_A 235 GPIANPEDARFILDSCQGCHGFYGASSMERLP 266 (286)
T ss_dssp TTCCSHHHHHHHHHHCTTCCEEEESHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCCCccEEEeehhhhcCC
Confidence 37999999999999875 99999998887655
No 143
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B
Probab=61.40 E-value=4 Score=29.61 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT 44 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~ 44 (101)
.+.++++++++++...||.|++-.+-++.++-+.++
T Consensus 245 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i 280 (378)
T 2qdd_A 245 CLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQI 280 (378)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred CcCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHH
Confidence 899999999999999999999999999888866553
No 144
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=61.20 E-value=3.5 Score=32.17 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=10.4
Q ss_pred CCeeeeeccccc
Q psy4403 25 ASSVMIARAAQD 36 (101)
Q Consensus 25 ~dgvMigRgAl~ 36 (101)
+||||||||=|+
T Consensus 306 sDgImVaRGDLg 317 (550)
T 3gr4_A 306 SDGIMVARGDLG 317 (550)
T ss_dssp SSEEEEEHHHHH
T ss_pred CCEEEEccchhc
Confidence 699999999764
No 145
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=60.33 E-value=3.3 Score=32.64 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=10.0
Q ss_pred CCeeeeeccccc
Q psy4403 25 ASSVMIARAAQD 36 (101)
Q Consensus 25 ~dgvMigRgAl~ 36 (101)
+||||||||=|+
T Consensus 257 sDGImVARGDLg 268 (606)
T 3t05_A 257 SDGLMVARGDMG 268 (606)
T ss_dssp CSCEEEEHHHHH
T ss_pred CCEEEEcccccc
Confidence 799999999553
No 146
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=59.88 E-value=3.7 Score=35.59 Aligned_cols=28 Identities=14% Similarity=-0.041 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|.|..|+.+++. -||++|++||+.|.-
T Consensus 1072 GIrtG~DVakALa-LGAdaV~iGTafL~a 1099 (1479)
T 1ea0_A 1072 GLKTGRDIVIAAM-LGAEEFGIGTASLIA 1099 (1479)
T ss_dssp SCCSHHHHHHHHH-TTCSEEECCHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCeeeEcHHHHHH
Confidence 7999999999995 799999999999763
No 147
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=59.74 E-value=3.7 Score=35.72 Aligned_cols=29 Identities=7% Similarity=-0.172 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.|.+..|+.+++. -||++|++||+.|.-+
T Consensus 1107 GIrtG~DVakALa-LGAdaV~iGTafL~al 1135 (1520)
T 1ofd_A 1107 GLKTGWDVVMAAL-MGAEEYGFGSIAMIAE 1135 (1520)
T ss_dssp SCCSHHHHHHHHH-TTCSEEECSHHHHHHT
T ss_pred CCCCHHHHHHHHH-cCCCeeEEcHHHHHHH
Confidence 7999999999995 7999999999987744
No 148
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=59.73 E-value=3.4 Score=27.28 Aligned_cols=27 Identities=7% Similarity=-0.050 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|. ++++.++. +.|+|+|-+||+....
T Consensus 178 GI~-~~~~~~~~-~~Gad~vvvGsai~~~ 204 (220)
T 2fli_A 178 GVD-NKTIRACY-EAGANVFVAGSYLFKA 204 (220)
T ss_dssp SCC-TTTHHHHH-HHTCCEEEESHHHHTS
T ss_pred cCC-HHHHHHHH-HcCCCEEEEChHHhCC
Confidence 577 78888865 4699999999997654
No 149
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=59.22 E-value=5.6 Score=28.42 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 7 SKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
||.| +.+.+.++. ++|+|++-+|.....-|++
T Consensus 258 SGGI-t~~~i~~~a-~~GvD~isvGsli~~a~~~ 289 (296)
T 1qap_A 258 SGNV-TAETLREFA-ETGVDFISVGALTKHVRAL 289 (296)
T ss_dssp CCCS-CHHHHHHHH-HTTCSEEECSHHHHEEECC
T ss_pred ECCC-CHHHHHHHH-HcCCCEEEEeHHHcCCCCC
Confidence 4479 999998887 5999999998855555553
No 150
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=59.05 E-value=3.6 Score=28.64 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC-----CCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN-----CSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n-----P~iF~~ 43 (101)
.|++. |+++++ .||+-|.+|-.|+.| |.++.+
T Consensus 84 Gir~~-~~~~~l--~Ga~~Viigs~a~~~~g~~~p~~~~~ 120 (260)
T 2agk_A 84 GINDT-NCLEWL--KWASKVIVTSWLFTKEGHFQLKRLER 120 (260)
T ss_dssp SCCTT-THHHHT--TTCSCEEECGGGBCTTCCBCHHHHHH
T ss_pred CCCHH-HHHHHh--cCCCEEEECcHHHhhcCCCCHHHHHH
Confidence 68887 999998 999999999999999 765544
No 151
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=57.84 E-value=3.8 Score=31.77 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=10.5
Q ss_pred CCeeeeeccccc
Q psy4403 25 ASSVMIARAAQD 36 (101)
Q Consensus 25 ~dgvMigRgAl~ 36 (101)
+||||||||=|+
T Consensus 281 sDGIMVARGDLg 292 (520)
T 3khd_A 281 SDGIMIARGDLG 292 (520)
T ss_dssp SSCEEECHHHHT
T ss_pred CCcEEEcccccc
Confidence 599999999775
No 152
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Probab=57.46 E-value=4.5 Score=28.37 Aligned_cols=27 Identities=4% Similarity=0.047 Sum_probs=23.3
Q ss_pred CHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 12 DYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
+++++.+++.+-++||+.+|++.|. ..
T Consensus 215 ~~~N~~~l~~~~diDG~LVGgAsL~-~~ 241 (250)
T 2j27_A 215 NGKNARTLYQQRDVNGFLVGGASLK-PE 241 (250)
T ss_dssp CTTTHHHHHTSTTCCEEEESGGGGS-TT
T ss_pred CHHHHHHHHcCCCCCeeeeehHHHH-HH
Confidence 4558889999999999999999998 53
No 153
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Probab=57.15 E-value=11 Score=26.27 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
=.+++.+.+++.+..+||+.||++.|.
T Consensus 207 SV~~~N~~~l~~~~diDG~LVGgASL~ 233 (244)
T 2v5b_A 207 SVTAKNARTLYQMRDINGFLVGGASLK 233 (244)
T ss_dssp CCCHHHHHHHHTSTTCCEEEESGGGSS
T ss_pred CCCHhHHHHHhcCCCCCeeeechHHHH
Confidence 457888999999999999999999998
No 154
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Probab=57.04 E-value=8 Score=27.80 Aligned_cols=35 Identities=9% Similarity=-0.129 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.+.++++++++++...||.|+|-.+-++-++-+.+
T Consensus 245 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ 279 (369)
T 2p8b_A 245 GLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVK 279 (369)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCEEEeecchhCCHHHHHH
Confidence 89999999999999999999998877776665443
No 155
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Probab=56.87 E-value=5.3 Score=28.10 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=21.4
Q ss_pred CHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 12 DYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+++++.+++++-++||+.+|++.|.
T Consensus 214 ~~~N~~~l~~~~diDG~LVGgAsL~ 238 (255)
T 1tre_A 214 NASNAAELFAQPDIDGALVGGASLK 238 (255)
T ss_dssp CTTTHHHHHTSTTCCEEEESGGGGC
T ss_pred CHHHHHHHHcCCCCCeeEecHHHhC
Confidence 4558889999999999999998874
No 156
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=56.74 E-value=8.6 Score=27.47 Aligned_cols=27 Identities=11% Similarity=0.003 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..+|+++.++.++||+|.+=++=|-..
T Consensus 158 yT~Peea~~Fv~~TgvD~LAvaiGt~H 184 (288)
T 3q94_A 158 YADPAECKHLVEATGIDCLAPALGSVH 184 (288)
T ss_dssp CCCHHHHHHHHHHHCCSEEEECSSCBS
T ss_pred CCCHHHHHHHHHHHCCCEEEEEcCccc
Confidence 589999999999999998888777554
No 157
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=56.29 E-value=8.8 Score=27.36 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..+|+++.++.++||+|.+=++=|-..
T Consensus 154 ~T~Peea~~Fv~~TgvD~LAvaiGt~H 180 (286)
T 1gvf_A 154 LTDPQEAKRFVELTGVDSLAVAIGTAH 180 (286)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECSSCCS
T ss_pred CCCHHHHHHHHHHHCCCEEEeecCccc
Confidence 589999999999999998888766554
No 158
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=56.15 E-value=8.8 Score=27.68 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
..+++++.++.++||||.+=++=|-..=..-|
T Consensus 152 yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~ 183 (305)
T 1rvg_A 152 LTNPEEARIFMERTGADYLAVAIGTSHGAYKG 183 (305)
T ss_dssp CCCHHHHHHHHHHHCCSEEEECSSCCSSSBCS
T ss_pred cCCHHHHHHHHHHHCCCEEEEecCccccccCC
Confidence 58999999999999999888887776544444
No 159
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=56.12 E-value=5.4 Score=27.93 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.++++++++.+ ++|||.+|-+...
T Consensus 207 GIst~e~a~~~~~--~ADGVIVGSAiVk 232 (252)
T 3tha_A 207 GIQNNQDVKRMRK--VADGVIVGTSIVK 232 (252)
T ss_dssp SCCSHHHHHHHTT--TSSEEEECHHHHH
T ss_pred CcCCHHHHHHHHh--cCCEEEECHHHHH
Confidence 5999999998875 5999999998874
No 160
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=55.49 E-value=9.2 Score=27.61 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..+++++.++.++||||.+=++=|-..
T Consensus 154 yT~Peea~~Fv~~TgvD~LAvaiGt~H 180 (307)
T 3n9r_A 154 LVNPKEAEQFVKESQVDYLAPAIGTSH 180 (307)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECSSCCS
T ss_pred CCCHHHHHHHHHHHCCCEEEEecCCcc
Confidence 589999999999999998888777654
No 161
>4a1g_E Protein CASC5; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens}
Probab=54.98 E-value=3.9 Score=21.80 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=14.1
Q ss_pred cCCCeeeeecccccCCCc
Q psy4403 23 TNASSVMIARAAQDNCSI 40 (101)
Q Consensus 23 tg~dgvMigRgAl~nP~i 40 (101)
|---.|||.||++..|-.
T Consensus 7 TASHTvmItk~Lldc~k~ 24 (53)
T 4a1g_E 7 TSSHTVMITKGLLDNPIS 24 (53)
T ss_pred chheeeeeecchhhCccc
Confidence 445579999999988754
No 162
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=54.07 E-value=10 Score=27.52 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
..+++++.++.++||||.+=++=|-..
T Consensus 152 yTdPeea~~Fv~~TgvD~LAvaiGt~H 178 (323)
T 2isw_A 152 LTEPQDAKKFVELTGVDALAVAIGTSH 178 (323)
T ss_dssp CCCHHHHHHHHHHHCCSEEEECSSCCS
T ss_pred cCCHHHHHHHHHHHCCCEEEEecCccc
Confidence 589999999999999998888776654
No 163
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=53.45 E-value=4.1 Score=28.63 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
|.| +++.+.++. ++|+|++-+|.....-|++
T Consensus 236 GGI-~~~ni~~~~-~aGaD~i~vGs~i~~a~~~ 266 (273)
T 2b7n_A 236 GNI-SLESINAYA-KSGVDAISVGALIHQATFI 266 (273)
T ss_dssp SSC-CTTTHHHHH-TTTCSEEECTHHHHTCCCC
T ss_pred CCC-CHHHHHHHH-HcCCcEEEEcHHhcCCCCC
Confidence 478 899998887 6999999999887766764
No 164
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=52.33 E-value=5.3 Score=30.88 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=10.2
Q ss_pred CCeeeeeccccc
Q psy4403 25 ASSVMIARAAQD 36 (101)
Q Consensus 25 ~dgvMigRgAl~ 36 (101)
+||||||||=|+
T Consensus 272 sDgimVaRGDLg 283 (511)
T 3gg8_A 272 ADGIMIARGDLG 283 (511)
T ss_dssp CSCEEEEHHHHH
T ss_pred CCeEEEecchhc
Confidence 599999999764
No 165
>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}
Probab=52.03 E-value=10 Score=27.64 Aligned_cols=35 Identities=3% Similarity=-0.125 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.+.|+++++++++...||.|+|-.+-++-++-+.+
T Consensus 255 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ 289 (401)
T 2hzg_A 255 AAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKR 289 (401)
T ss_dssp TCSSHHHHHHHHHHSCCSEEEECHHHHTSHHHHHH
T ss_pred CcCCHHHHHHHHHCCCCCEEEeCcchhCCHHHHHH
Confidence 89999999999999999999998887777765444
No 166
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=51.95 E-value=11 Score=27.15 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~ 42 (101)
.+.++++++++++...||.|++--+-++-++=+.
T Consensus 247 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~ 280 (371)
T 2ps2_A 247 LATNEMSIVKILADDAAEGIDLKISKAGGLTRGR 280 (371)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHH
T ss_pred CcCCHHHHHHHHHhCCCCEEEechhhcCCHHHHH
Confidence 8999999999999999999999777776665443
No 167
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A
Probab=51.93 E-value=7.7 Score=28.22 Aligned_cols=34 Identities=9% Similarity=-0.125 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.+.++++++++++...||.|+|-.+- +-++-+.+
T Consensus 267 ~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~ 300 (388)
T 2nql_A 267 EWRTHWDMRARIERCRIAIVQPEMGH-KGITNFIR 300 (388)
T ss_dssp TCCSHHHHHHHHTTSCCSEECCCHHH-HCHHHHHH
T ss_pred CcCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHH
Confidence 89999999999999999999998777 77765544
No 168
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=51.49 E-value=11 Score=26.58 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.+++++.+..+ .|+|||.+|-+...
T Consensus 216 GIst~e~~~~~~~-~gADgvIVGSAiv~ 242 (271)
T 3nav_A 216 GISEPAQVKQAIE-AGAAGAISGSAVVK 242 (271)
T ss_dssp SCCSHHHHHHHHH-TTCSEEEESHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 6999999986664 68999999988764
No 169
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Probab=51.24 E-value=5.9 Score=27.87 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=24.1
Q ss_pred CHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 12 DYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
+++++.++++.-++||+.+|++.|. |- |.+
T Consensus 218 ~~~N~~~l~~~~diDG~LVGgAsL~-a~-F~~ 247 (257)
T 2yc6_A 218 NGSNNEKLGQCPNIDGFLVGGASLK-PE-FMT 247 (257)
T ss_dssp CTTTHHHHHTSTTCCEEEESGGGGS-TH-HHH
T ss_pred CHHHHHHHHcCCCCCeeeecHHHHH-HH-HHH
Confidence 4558888898899999999998884 55 654
No 170
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus}
Probab=50.21 E-value=8.1 Score=27.05 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.+++.+.++..+-++||+++|++.|. |. |.+
T Consensus 212 V~~~N~~~l~~~~diDG~LVGgASL~-~~-F~~ 242 (249)
T 3th6_A 212 VNAGNCKELGRKPDIDGFLVGGASLK-PE-FVQ 242 (249)
T ss_dssp CCTTTHHHHHTSTTCCEEEECGGGGS-TH-HHH
T ss_pred cCHhHHHHHhcCCCCCEEEeehHhhh-HH-HHH
Confidence 45566678888899999999999985 54 644
No 171
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=49.98 E-value=7.6 Score=29.65 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=9.3
Q ss_pred CCeeeeecccc
Q psy4403 25 ASSVMIARAAQ 35 (101)
Q Consensus 25 ~dgvMigRgAl 35 (101)
+||+|||||=|
T Consensus 237 sDgImVargDL 247 (470)
T 1e0t_A 237 SDGIMVARGDL 247 (470)
T ss_dssp SSEEEEEHHHH
T ss_pred CCEEEECchHh
Confidence 79999999833
No 172
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=49.79 E-value=7.5 Score=25.34 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.|. ++++.+++ +.|+|+|-+||+....|
T Consensus 166 GI~-~~~~~~~~-~aGad~vvvGsaI~~~~ 193 (207)
T 3ajx_A 166 GVK-VATIPAVQ-KAGAEVAVAGGAIYGAA 193 (207)
T ss_dssp SCC-GGGHHHHH-HTTCSEEEESHHHHTSS
T ss_pred CcC-HHHHHHHH-HcCCCEEEEeeeccCCC
Confidence 465 67787777 58999999999986543
No 173
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=49.47 E-value=12 Score=26.18 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|.+++++.+..+ .|+|||.+|-+...
T Consensus 214 GI~~~e~~~~~~~-~gADgvVVGSaiv~ 240 (267)
T 3vnd_A 214 GIAEPEQVRAAIK-AGAAGAISGSAVVK 240 (267)
T ss_dssp SCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred CcCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 6999999986664 68999999986653
No 174
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=49.32 E-value=9.4 Score=26.48 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=24.0
Q ss_pred CCCCCCCCCHHHHHHHHH-hcCCCeeeeeccccc--CCCcc
Q psy4403 4 SGGSKEIVDYGGILKFKA-DTNASSVMIARAAQD--NCSIF 41 (101)
Q Consensus 4 NGgsGDI~s~~d~~~~~~-~tg~dgvMigRgAl~--nP~iF 41 (101)
||.++=|.+.++-....+ ...+|+||+||+... ||.+.
T Consensus 51 ~g~s~wit~~~~~~~~~~lr~~~DaIlvG~~T~~~d~p~l~ 91 (270)
T 2p4g_A 51 SGVSGPMGDQTDADLLIQLRGWADAIVVGAETARKENYGPV 91 (270)
T ss_dssp TTBSGGGCCHHHHHHHHHHHHHCSEEEEEHHHHHHTTCCSC
T ss_pred CCCccCcCCHHHHHHHHHHHHHCCEEEEChHHhhhhCCccc
Confidence 443333566655433333 246999999999885 77754
No 175
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=49.08 E-value=11 Score=26.06 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|.+++++.++. -|+|||.+|.+....
T Consensus 214 GI~t~e~~~~~~--~gADgvIVGSai~~~ 240 (262)
T 2ekc_A 214 GVSKKEHAREIG--SFADGVVVGSALVKL 240 (262)
T ss_dssp SCCSHHHHHHHH--TTSSEEEECHHHHHH
T ss_pred CCCCHHHHHHHH--cCCCEEEECHHHHhh
Confidence 599999999943 479999999998875
No 176
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=47.77 E-value=4.9 Score=28.64 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 7 SKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
||.| +.+.+.++. ++|+|++-+|.....-|++
T Consensus 255 SGGI-t~~ni~~~~-~~GvD~i~vGs~i~~a~~~ 286 (294)
T 3c2e_A 255 SGGL-NLDNLEEYL-CDDIDIYSTSSIHQGTPVI 286 (294)
T ss_dssp ECCC-CC------C-CCSCSEEECGGGTSSCCCC
T ss_pred ECCC-CHHHHHHHH-HcCCCEEEEechhcCCCCC
Confidence 4478 899998876 6999999998876555664
No 177
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=47.41 E-value=7.9 Score=30.36 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=9.0
Q ss_pred CCeeeeecccc
Q psy4403 25 ASSVMIARAAQ 35 (101)
Q Consensus 25 ~dgvMigRgAl 35 (101)
+||||||||=|
T Consensus 238 ~DgImVargDL 248 (587)
T 2e28_A 238 ADGLMVARGDL 248 (587)
T ss_dssp SSEEEEEHHHH
T ss_pred CCEEEEcCchh
Confidence 49999999833
No 178
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1
Probab=47.22 E-value=5 Score=28.26 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=21.7
Q ss_pred CHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 12 DYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+++++.+++.+-++||+.+|++.|.
T Consensus 216 ~~~N~~~l~~~~diDG~LVGgASLk 240 (255)
T 1b9b_A 216 KPDNFLGLIVQKDIDGGLVGGASLK 240 (255)
T ss_dssp CHHHHTTTSSSTTCCEEEESGGGTS
T ss_pred CHHHHHHHHcCCCCCeeEeehHhhc
Confidence 5588888888899999999998885
No 179
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A
Probab=46.56 E-value=9.8 Score=26.91 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIFSP 43 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~ 43 (101)
.+++.+.+++.+..+||++||++.|. |-=|.+
T Consensus 219 V~~~N~~el~~~~diDG~LVGgASL~-~~~F~~ 250 (267)
T 3ta6_A 219 VNAKNVGDIVAQDDVDGGLVGGASLD-GEHFAT 250 (267)
T ss_dssp CCTTTHHHHHTSTTCCEEEECGGGGS-HHHHHH
T ss_pred cCHhHHHHHhcCCCCCEEEechHhcC-HHHHHH
Confidence 45677788888888999999999884 554544
No 180
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Probab=46.31 E-value=8.6 Score=26.92 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=22.2
Q ss_pred CHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 12 DYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
+++.+.++..+-++||+.+|++.|. +.
T Consensus 216 ~~~N~~~l~~~~diDG~LVGgAsL~-~~ 242 (251)
T 2vxn_A 216 NAANAATLYAKPDINGFLVGGASLK-PE 242 (251)
T ss_dssp CTTTHHHHHTSTTCCEEEESGGGGS-TT
T ss_pred CHhHHHHHhcCCCCCeeeecHHHHH-HH
Confidence 5566677888899999999999998 53
No 181
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis}
Probab=46.23 E-value=10 Score=26.96 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.+++.+.+++.+-.+||++||++.|.
T Consensus 235 V~~~N~~el~~~~dIDG~LVGgASL~ 260 (272)
T 4g1k_A 235 VKADNAAELFGQPDIDGGLIGGASLK 260 (272)
T ss_dssp CCTTTHHHHHTSTTCCEEEECGGGGS
T ss_pred cCHhHHHHHhcCCCCCEEEechHhcC
Confidence 45677778888889999999998874
No 182
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}
Probab=45.78 E-value=9.5 Score=27.12 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
=.+++.+.+++....+||++||++.|.
T Consensus 235 SV~~~Na~el~~~~dIDG~LVGgASL~ 261 (275)
T 3kxq_A 235 SVKPSNAFELLSTAHVNGALIGGASLK 261 (275)
T ss_dssp CCCTTTHHHHHTSTTCCEEEESGGGSS
T ss_pred CcCHhHHHHHHcCCccceEEeehhhcC
Confidence 346677888888899999999998874
No 183
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=45.58 E-value=8.8 Score=25.57 Aligned_cols=28 Identities=11% Similarity=0.041 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.|. ++++.+++ +.|+|+|-+|++....|
T Consensus 187 GI~-~~n~~~~~-~aGad~vvvgSaI~~a~ 214 (230)
T 1rpx_A 187 GVG-PKNAYKVI-EAGANALVAGSAVFGAP 214 (230)
T ss_dssp SCC-TTTHHHHH-HHTCCEEEESHHHHTSS
T ss_pred CCC-HHHHHHHH-HcCCCEEEEChhhhCCC
Confidence 466 77887765 46999999999987543
No 184
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=45.50 E-value=12 Score=25.08 Aligned_cols=28 Identities=4% Similarity=-0.180 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
-|+|.||+.+ + +.|+++|.-+.-.|+|.
T Consensus 157 lI~t~edv~~-l-~aGA~aIsTs~~~LW~~ 184 (188)
T 1vkf_A 157 LVETEEEARE-I-LKHVSAISTSSRILWKM 184 (188)
T ss_dssp CCCSHHHHHH-H-TTTSSEEEECCHHHHTC
T ss_pred CcCCHHHHHH-H-HCCCeEEEeCCHHHhCC
Confidence 7999999999 5 69999999988777653
No 185
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Probab=45.46 E-value=16 Score=26.26 Aligned_cols=33 Identities=3% Similarity=0.064 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
.+.+++|++++++...||.|++=-+-++-++-+
T Consensus 247 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~ 279 (370)
T 1nu5_A 247 SLSSLSSAFELARDHAVDAFSLKLCNMGGIANT 279 (370)
T ss_dssp TCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHH
T ss_pred CCCCHHHHHHHHHhCCCCEEEEchhhcCCHHHH
Confidence 799999999999998899999966655555433
No 186
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=45.42 E-value=6.6 Score=22.73 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=29.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403 2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFS 42 (101)
Q Consensus 2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~ 42 (101)
+.||-.-.|.+..+|.++.++.|.|=|.|+-. ++|=+.+
T Consensus 20 ~~~Ge~lGv~~~~eAl~~A~e~~LDLVevsp~--a~PPVCk 58 (78)
T 1tif_A 20 DQNGDQLGIKSKQEALEIAARRNLDLVLVAPN--AKPPVCR 58 (78)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHTTCEEEEEETT--SSSCEEE
T ss_pred CCCCcCCCcccHHHHHHHHHHcCCCEEEECCC--CCCCEEE
Confidence 34553334899999999999999999999976 4665543
No 187
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Probab=44.99 E-value=11 Score=26.62 Aligned_cols=26 Identities=8% Similarity=0.182 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.+++.+.++..+-++||+.+|++.|.
T Consensus 211 V~~~N~~~l~~~~diDG~LVGgAsL~ 236 (259)
T 2i9e_A 211 VTAANCKELASQPDIDGFLVGGASLK 236 (259)
T ss_dssp CCTTTHHHHHTSTTCCEEEESGGGGS
T ss_pred CCHhhHHHHhcCCCCCeeeechHhhC
Confidence 35566667888899999999999885
No 188
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Probab=44.70 E-value=11 Score=26.57 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.+++.+.++..+-++||+.+|++.|.
T Consensus 221 V~~~N~~~l~~~~diDG~LVGgAsL~ 246 (261)
T 1m6j_A 221 VNPANCNELAKKADIDGFLVGGASLD 246 (261)
T ss_dssp CCTTTHHHHHTSTTCCEEEESGGGGS
T ss_pred cCHhhHHHHhcCCCCCeeEecHHHhC
Confidence 35566677888889999999998874
No 189
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=44.54 E-value=7 Score=25.94 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDY 64 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~ 64 (101)
.|. ++++.++++ +|++||-++++....+..-.. ....+.+..+..+-..+
T Consensus 152 GI~-~~nv~~~~~-~Ga~gVav~s~i~~~~d~~~~----~~~~~~v~~~~~~~~~~ 201 (210)
T 3ceu_A 152 GIN-EDNLLEIKD-FGFGGAVVLGDLWNKFDACLD----QNYLAVIEHFKKLKKLA 201 (210)
T ss_dssp SCC-TTTHHHHHH-TTCSEEEESHHHHTTCCTTTS----SCCHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHH-hCCCEEEEhHHhHcCCCHHHH----HHHHHHHHHHHHHHHhh
Confidence 465 888888886 999999999999864433111 12345566655544433
No 190
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Probab=44.51 E-value=11 Score=26.35 Aligned_cols=26 Identities=8% Similarity=0.151 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.+++.+.++..+.++||+.+|++.|.
T Consensus 212 V~~~N~~~l~~~~diDG~LVGgAsL~ 237 (248)
T 1r2r_A 212 VTGATCKELASQPDVDGFLVGGASLK 237 (248)
T ss_dssp CCTTTHHHHHTSTTCCEEEESGGGGS
T ss_pred cCHhHHHHHHcCCCCCeeEechHHhC
Confidence 35566777888899999999999885
No 191
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=44.21 E-value=11 Score=33.77 Aligned_cols=30 Identities=3% Similarity=-0.071 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHH----------hcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKA----------DTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~----------~tg~dgvMigRgAl~nP 38 (101)
.|.+.+|+.+++. ..|+||||+|...+.-+
T Consensus 763 GI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~ 802 (2060)
T 2uva_G 763 GFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAK 802 (2060)
T ss_dssp SCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBT
T ss_pred CCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCc
Confidence 6999999999991 36899999999877643
No 192
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Probab=44.00 E-value=9.1 Score=26.51 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=20.6
Q ss_pred CHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 12 DYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+++.+.++..+-++||+.+|++.|.
T Consensus 198 ~~~N~~~l~~~~diDG~LVGgAsl~ 222 (233)
T 2jgq_A 198 NTQNAKEILGIDSVDGLLIGSASWE 222 (233)
T ss_dssp CTTTHHHHHTSTTCCEEEESGGGGS
T ss_pred ChhhHHHHhcCCCCCeeEecHHHhC
Confidence 5566677888899999999999874
No 193
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A
Probab=43.90 E-value=17 Score=26.00 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.+++++|++++++...||.|++--+-.+-++
T Consensus 246 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 276 (366)
T 1tkk_A 246 SVFTPRQAFEVLQTRSADLINIKLMKAGGIS 276 (366)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEECHHHHTSHH
T ss_pred CCCCHHHHHHHHHhCCCCEEEeehhhhcCHH
Confidence 7999999999999989999998655554443
No 194
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=43.08 E-value=16 Score=25.99 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCCeeeeecccccC
Q psy4403 14 GGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 14 ~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
+.+...++ .|++||.+||.+...
T Consensus 238 ~~~~~a~~-aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 238 RAVRVAME-AGASGFLAGRAVWSS 260 (304)
T ss_dssp HHHHHHHH-TTCCEEEESHHHHGG
T ss_pred HHHHHHHH-cCCeEEEEehHHhCc
Confidence 34666664 599999999998866
No 195
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=42.87 E-value=5.8 Score=25.90 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.|. .+++.+++ ..|+|+|.+|++.+.
T Consensus 158 GI~-~~~~~~~~-~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 158 GVN-LDNVCEWF-KAGVLAVGVGSALVK 183 (205)
T ss_dssp SCC-TTTHHHHH-HHTCSCEEECHHHHC
T ss_pred CCC-HHHHHHHH-HCCCCEEEECccccC
Confidence 585 78898888 589999999998876
No 196
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=42.35 E-value=20 Score=16.15 Aligned_cols=13 Identities=23% Similarity=0.647 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHh
Q psy4403 10 IVDYGGILKFKAD 22 (101)
Q Consensus 10 I~s~~d~~~~~~~ 22 (101)
|+++.|+.++.|.
T Consensus 4 iFt~selqr~qEk 16 (26)
T 1lbj_A 4 IFTYGELQRMQEK 16 (26)
T ss_dssp TTCHHHHHHHHHH
T ss_pred eeeHHHHHHHHHH
Confidence 7899999998875
No 197
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=41.99 E-value=30 Score=22.83 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=19.8
Q ss_pred CCCCCCCCCHHHHHHHHH-hcCCCeeeeeccccc
Q psy4403 4 SGGSKEIVDYGGILKFKA-DTNASSVMIARAAQD 36 (101)
Q Consensus 4 NGgsGDI~s~~d~~~~~~-~tg~dgvMigRgAl~ 36 (101)
||.+ =|.+.++-....+ ...+|+||+||+...
T Consensus 22 ~g~~-wit~~~~~~~~~~lr~~~dailvG~~T~~ 54 (219)
T 2azn_A 22 NNDS-RISCEEDLIRVHKIRANVDGIMVGIGTVL 54 (219)
T ss_dssp TCCC-CCCCHHHHHHHHHHHHTSSEEEEEHHHHH
T ss_pred CCCC-CCCCHHHHHHHHHHHHHCCEEEEChhehh
Confidence 4433 3456555443433 357999999999654
No 198
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Probab=40.99 E-value=19 Score=25.87 Aligned_cols=31 Identities=0% Similarity=-0.158 Sum_probs=24.7
Q ss_pred CCCC-HHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVD-YGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s-~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.+.| +++++++++...||.|++--+-++-++
T Consensus 259 ~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 290 (382)
T 1rvk_A 259 SAAGKHWHRAEWIKAGACDILRTGVNDVGGIT 290 (382)
T ss_dssp SCSSHHHHHHHHHHTTCCSEEEECHHHHTSHH
T ss_pred CccCcHHHHHHHHHcCCCCEEeeCchhcCCHH
Confidence 7899 999999999888999988655554444
No 199
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=40.20 E-value=6 Score=28.23 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 7 SKEIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 7 sGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
||.| +.+.+.++. ++|+|++-+|......|++
T Consensus 250 SGGI-t~~ni~~~~-~aGaD~i~vGs~i~~a~~~ 281 (299)
T 2jbm_A 250 SGGI-TLDNLPQFC-GPHIDVISMGMLTQAAPAL 281 (299)
T ss_dssp ESSC-CTTTHHHHC-CTTCCEEECTHHHHSCCCC
T ss_pred ECCC-CHHHHHHHH-HCCCCEEEEChhhcCCCCc
Confidence 3478 899998876 6999999998865555665
No 200
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=39.45 E-value=18 Score=26.29 Aligned_cols=33 Identities=3% Similarity=-0.166 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
.+.++++++++++...||.|++-.+-++-++-+
T Consensus 253 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~ 285 (391)
T 2qgy_A 253 KQSGLVHFRELISRNAADIFNPDISGMGGLIDI 285 (391)
T ss_dssp TCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHH
T ss_pred CcCCHHHHHHHHHcCCCCEEEECcchhCCHHHH
Confidence 899999999999998999999977666666543
No 201
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=39.24 E-value=14 Score=27.02 Aligned_cols=31 Identities=0% Similarity=0.040 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~ 39 (101)
.+.+++|++++++...||.|++--+-.+-++
T Consensus 255 ~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit 285 (389)
T 3ozy_A 255 NLYTRNAFNDYIRNDAIDVLQADASRAGGIT 285 (389)
T ss_dssp TCCHHHHHHHHHHTTCCSEECCCTTTSSCHH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 8999999999999999999998666665554
No 202
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=38.58 E-value=13 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.113 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHhcCCC--eeeeeccc
Q psy4403 8 KEIVDYGGILKFKADTNAS--SVMIARAA 34 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~d--gvMigRgA 34 (101)
|.|.|.+|+.++++ -|++ |+=.||.+
T Consensus 183 GGirt~~~al~~i~-aGa~RiG~S~g~~I 210 (220)
T 1ub3_A 183 GGIRDRETALRMLK-AGASRLGTSSGVAL 210 (220)
T ss_dssp SSCCSHHHHHHHHH-TTCSEEEETTHHHH
T ss_pred CCCCCHHHHHHHHH-CCCcccchhHHHHH
Confidence 37999999999996 6888 66666543
No 203
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=37.22 E-value=14 Score=23.42 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHhcC--CCeeeee
Q psy4403 11 VDYGGILKFKADTN--ASSVMIA 31 (101)
Q Consensus 11 ~s~~d~~~~~~~tg--~dgvMig 31 (101)
.|+.+|.+.+.+-| .+|.|||
T Consensus 70 ds~~~A~rAL~~NG~ii~G~mIG 92 (132)
T 3p3d_A 70 DNPASAVDALLENGAVFNGVLLG 92 (132)
T ss_dssp SSHHHHHHHHTTTTCEETTEECE
T ss_pred CCHHHHHHHHHhCCeEeCcEEEE
Confidence 47788888888877 5677776
No 204
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1
Probab=36.95 E-value=11 Score=26.86 Aligned_cols=25 Identities=4% Similarity=0.120 Sum_probs=19.5
Q ss_pred CHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 12 DYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+++.+.++..+-++||+.+|++.|.
T Consensus 232 ~~~N~~el~~~~diDG~LVGgASLk 256 (275)
T 1mo0_A 232 TADNAAELGKKPDIDGFLVGGASLK 256 (275)
T ss_dssp CTTTHHHHTTSTTCCEEEESGGGGS
T ss_pred CHhhHHHHhcCCCCCeeEechHHhC
Confidence 4556667777788999999988874
No 205
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=36.85 E-value=18 Score=24.21 Aligned_cols=28 Identities=7% Similarity=0.010 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.|.. +++.++.+ .|+|++.+|++....|
T Consensus 181 GI~~-~ni~~~~~-aGaD~vvvGsai~~~~ 208 (228)
T 1h1y_A 181 GLGP-STIDVAAS-AGANCIVAGSSIFGAA 208 (228)
T ss_dssp SCST-TTHHHHHH-HTCCEEEESHHHHTSS
T ss_pred CcCH-HHHHHHHH-cCCCEEEECHHHHCCC
Confidence 4665 77777764 5999999999986544
No 206
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=35.49 E-value=15 Score=28.21 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=8.7
Q ss_pred CCeeeeeccc
Q psy4403 25 ASSVMIARAA 34 (101)
Q Consensus 25 ~dgvMigRgA 34 (101)
+||+|+|||=
T Consensus 257 ~DgImvgrgD 266 (500)
T 1a3w_A 257 TDGVMVARGD 266 (500)
T ss_dssp SSEEEECHHH
T ss_pred CCEEEECchH
Confidence 6999999983
No 207
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=35.45 E-value=28 Score=24.89 Aligned_cols=30 Identities=10% Similarity=0.034 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.+.+++|++++++...||.|++--+-.+-+
T Consensus 242 ~~~~~~~~~~~l~~~~~d~v~~k~~~~GGi 271 (354)
T 3jva_A 242 SCFDAQDALELVKKGTVDVINIKLMKCGGI 271 (354)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEECHHHHTSH
T ss_pred CcCCHHHHHHHHHcCCCCEEEECchhcCCH
Confidence 789999999999988899988865554443
No 208
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=35.19 E-value=18 Score=25.85 Aligned_cols=27 Identities=11% Similarity=-0.002 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHhcCCC--eeeeecccc
Q psy4403 8 KEIVDYGGILKFKADTNAS--SVMIARAAQ 35 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~d--gvMigRgAl 35 (101)
|.|+|.+|+.++++ -||+ |.-.|+.++
T Consensus 241 GGIrt~edAl~mi~-aGA~RiGtS~g~~I~ 269 (288)
T 3oa3_A 241 GGIRTIEDCVKMVR-AGAERLGASAGVKIV 269 (288)
T ss_dssp SSCCSHHHHHHHHH-TTCSEEEESCHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCceeehhhHHHHH
Confidence 47999999999996 7888 555554443
No 209
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=34.74 E-value=23 Score=19.60 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.+.+++..++++||+ |.|=++-||.
T Consensus 8 it~~~Vk~LRe~TGa-g~~dcKkAL~ 32 (64)
T 2cp9_A 8 SSKELLMKLRRKTGY-SFVNCKKALE 32 (64)
T ss_dssp CCCHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 367999999999997 4676666653
No 210
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=34.63 E-value=18 Score=24.97 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHhcCCC--eeeeeccc
Q psy4403 8 KEIVDYGGILKFKADTNAS--SVMIARAA 34 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~d--gvMigRgA 34 (101)
|.|+|.+|+.+++ +-|++ |.-.|+.+
T Consensus 197 GGIrt~~~a~~~i-~aGa~RiGtS~g~~I 224 (231)
T 3ndo_A 197 GGIRTAEQAAAML-DAGATRLGLSGSRAV 224 (231)
T ss_dssp SSCCSHHHHHHHH-HTTCSEEEESSHHHH
T ss_pred CCCCCHHHHHHHH-HhcchhcccchHHHH
Confidence 3699999999998 47887 65555444
No 211
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=34.04 E-value=15 Score=24.89 Aligned_cols=28 Identities=7% Similarity=0.117 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.|.. +++.++. ..|+|++.+|++..+.|
T Consensus 181 GI~~-~~~~~~~-~aGad~vvvGSai~~a~ 208 (230)
T 1tqj_A 181 GLKP-NNTWQVL-EAGANAIVAGSAVFNAP 208 (230)
T ss_dssp SCCT-TTTHHHH-HHTCCEEEESHHHHTSS
T ss_pred CcCH-HHHHHHH-HcCCCEEEECHHHHCCC
Confidence 5765 7887776 58999999999987654
No 212
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=34.02 E-value=33 Score=26.81 Aligned_cols=26 Identities=4% Similarity=-0.074 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
|.|++|+.++...|+.|.+.|+-=++
T Consensus 545 V~tp~dA~~~f~~~~lD~Lv~~~~lv 570 (576)
T 3ven_A 545 VSSPADALLTFSRLPIDALAVGPYLV 570 (576)
T ss_dssp CCSHHHHHHHHHHTTCSEEEETTEEE
T ss_pred CCCHHHHHHHHHhCCCCEEEECCEEE
Confidence 99999999999999999998875444
No 213
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=33.60 E-value=30 Score=25.09 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMIA 31 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMig 31 (101)
.+ +++|++++++.-.||.|++.
T Consensus 252 ~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 252 YL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp TC-CHHHHHHHHHTTCCSEEEEC
T ss_pred CC-CHHHHHHHHHcCCCCEEEEC
Confidence 78 99999999998889999997
No 214
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=32.52 E-value=32 Score=24.88 Aligned_cols=30 Identities=7% Similarity=0.051 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
.+.+++|++++++...||.|++--+-.+-+
T Consensus 253 ~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi 282 (383)
T 3i4k_A 253 SVWTPAEALAVVKAQAADVIALKTTKHGGL 282 (383)
T ss_dssp TCSSHHHHHHHHHHTCCSEEEECTTTTTSH
T ss_pred ccCCHHHHHHHHHcCCCCEEEEcccccCCH
Confidence 799999999999988899998865544433
No 215
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1
Probab=31.63 E-value=19 Score=24.83 Aligned_cols=27 Identities=11% Similarity=-0.160 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHhcCCC--eeeeecccc
Q psy4403 8 KEIVDYGGILKFKADTNAS--SVMIARAAQ 35 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~d--gvMigRgAl 35 (101)
|.|.+.+|+.+++ +-|++ |+=.||.++
T Consensus 199 GGirt~~~al~~i-~aGa~RiG~S~g~~I~ 227 (234)
T 1n7k_A 199 GGIRSGIDAVLAV-GAGADIIGTSSAVKVL 227 (234)
T ss_dssp SSCCSHHHHHHHH-HTTCSEEEETTHHHHH
T ss_pred cCCCCHHHHHHHH-HcCccccchHHHHHHH
Confidence 4799999999999 58888 766665544
No 216
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=31.18 E-value=22 Score=24.98 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHhcCCC--eeeeecc
Q psy4403 8 KEIVDYGGILKFKADTNAS--SVMIARA 33 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~d--gvMigRg 33 (101)
|.|+|.+|+.++++ -||+ |.-.|+.
T Consensus 223 GGIrt~~~al~mi~-aGA~RiGtS~g~~ 249 (260)
T 3r12_A 223 GGIRTFEDAVKMIM-YGADRIGTSSGVK 249 (260)
T ss_dssp SSCCSHHHHHHHHH-TTCSEEEESCHHH
T ss_pred CCCCCHHHHHHHHH-cCCceeecchHHH
Confidence 36888888888874 6777 5444443
No 217
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A
Probab=30.44 E-value=29 Score=24.84 Aligned_cols=27 Identities=7% Similarity=0.017 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHhc-CCCeeeeecccc
Q psy4403 9 EIVDYGGILKFKADT-NASSVMIARAAQ 35 (101)
Q Consensus 9 DI~s~~d~~~~~~~t-g~dgvMigRgAl 35 (101)
.+.+++|++++++.. .||.|++--+-.
T Consensus 243 ~~~~~~~~~~~~~~~~~~d~v~~k~~~~ 270 (356)
T 3ro6_B 243 SLLGPADAFALAAPPAACGIFNIKLMKC 270 (356)
T ss_dssp TCCSHHHHHHHHSSSCSCSEEEECHHHH
T ss_pred cCCCHHHHHHHHhcCCcCCEEEEccccc
Confidence 899999999999988 899998854433
No 218
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=29.20 E-value=57 Score=19.50 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
.| ++++|++++...|.+|.-+-|-.-..|.-|
T Consensus 27 ~i-sR~eAe~lL~~~~~~G~FLVR~S~~~~g~y 58 (118)
T 2el8_A 27 KV-SRLEAQLLLERYPECGNLLLRPSGDGADGV 58 (118)
T ss_dssp CC-CHHHHHHHHHHSSTTCSBEEEECCSSSSSE
T ss_pred CC-CHHHHHHHHhhCCCCcEEEEeeCCCCCCce
Confidence 44 899999999888889999999887777543
No 219
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Probab=29.03 E-value=58 Score=19.15 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=23.8
Q ss_pred CHHHHHHHHHhcCC-CeeeeecccccCCCcc
Q psy4403 12 DYGGILKFKADTNA-SSVMIARAAQDNCSIF 41 (101)
Q Consensus 12 s~~d~~~~~~~tg~-dgvMigRgAl~nP~iF 41 (101)
+.++|++++...|. +|.-+-|-.-.+|.-|
T Consensus 22 sR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y 52 (117)
T 3pqz_A 22 SREESQRLIGQQGLVDGLFLVRESQRNPQGF 52 (117)
T ss_dssp CHHHHHHHHHHTTCCTTEEEEEECCC-CCCE
T ss_pred CHHHHHHHHhcCCCCCCEEEEEecCCCCCcE
Confidence 89999999998774 8888888887777654
No 220
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=28.64 E-value=20 Score=24.30 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.| +++.+.++. +.|+|.+.+||+..+
T Consensus 177 GI-~~~t~~~~~-~aGAd~~VvGsaIf~ 202 (228)
T 3ovp_A 177 GV-GPDTVHKCA-EAGANMIVSGSAIMR 202 (228)
T ss_dssp SC-STTTHHHHH-HHTCCEEEESHHHHT
T ss_pred Cc-CHHHHHHHH-HcCCCEEEEeHHHhC
Confidence 46 467777766 589999999997554
No 221
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=28.50 E-value=37 Score=24.13 Aligned_cols=27 Identities=22% Similarity=0.095 Sum_probs=18.5
Q ss_pred CHHHHHHHHH---hcCCCeeeeecccccCC
Q psy4403 12 DYGGILKFKA---DTNASSVMIARAAQDNC 38 (101)
Q Consensus 12 s~~d~~~~~~---~tg~dgvMigRgAl~nP 38 (101)
+.+|+.+..+ ..|++||.+||.+...|
T Consensus 235 ~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~ 264 (295)
T 3glc_A 235 PEREALEMCWQAIDQGASGVDMGRNIFQSD 264 (295)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESHHHHTSS
T ss_pred CHHHHHHHHHHHHHhCCeEEEeHHHHhcCc
Confidence 5545444432 25999999999987654
No 222
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...
Probab=28.38 E-value=57 Score=19.45 Aligned_cols=31 Identities=6% Similarity=0.120 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIF 41 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF 41 (101)
.+.++|++++...+.+|.-+-|-...+|.-|
T Consensus 13 isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y 43 (117)
T 3ov1_A 13 IPRAKAEEMLSKQRHDGAFLIRESESAPGDF 43 (117)
T ss_dssp CCHHHHHHHHHTCCSTTBEEEEECSSSTTCE
T ss_pred CCHHHHHHHHhCCCCCCcEEEEeCCCCCCCE
Confidence 3899999999987788999999888888654
No 223
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Probab=27.96 E-value=36 Score=24.67 Aligned_cols=22 Identities=9% Similarity=-0.052 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
.+.++++++++++.-.||.|++
T Consensus 266 ~~~~~~~~~~~i~~~~~d~v~i 287 (393)
T 2og9_A 266 MLTSAAEHGDLIRHRAADYLMP 287 (393)
T ss_dssp TCCSHHHHHHHHHTTCCSEECC
T ss_pred CcCCHHHHHHHHHCCCCCEEee
Confidence 6777777777777766777665
No 224
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=27.81 E-value=55 Score=22.59 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeec
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigR 32 (101)
||+.+.+++.++++..++|.|...=
T Consensus 67 ~Dl~d~~~l~~~~~~~~~d~Vi~~a 91 (346)
T 3i6i_A 67 GLINEQEAMEKILKEHEIDIVVSTV 91 (346)
T ss_dssp CCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred eecCCHHHHHHHHhhCCCCEEEECC
Confidence 4999999999999988999876543
No 225
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=27.59 E-value=34 Score=24.19 Aligned_cols=30 Identities=3% Similarity=0.057 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.| +++.+.++. .||+|+|-+|...-.-|++
T Consensus 248 GI-t~eni~~~a-~tGvD~IsVgs~~~~a~~~ 277 (286)
T 1x1o_A 248 NM-TLERAKAAA-EAGVDYVSVGALTHSAKAL 277 (286)
T ss_dssp SC-CHHHHHHHH-HHTCSEEECTHHHHSCCCC
T ss_pred CC-CHHHHHHHH-HcCCCEEEEcHHHcCCCce
Confidence 55 688997776 6999999997755554654
No 226
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=27.49 E-value=39 Score=24.29 Aligned_cols=24 Identities=4% Similarity=0.134 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeec
Q psy4403 9 EIVDYGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigR 32 (101)
.+.+++|++++++...||.|++--
T Consensus 247 ~~~~~~~~~~~~~~~~~d~v~~k~ 270 (370)
T 1chr_A 247 SLSTLASAFDLARDRSVDVFSLKL 270 (370)
T ss_dssp SCCSHHHHHHHHTTTSCSEEEECT
T ss_pred CcCCHHHHHHHHHcCCCCEEEECc
Confidence 789999999999888899888743
No 227
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=27.37 E-value=19 Score=27.72 Aligned_cols=30 Identities=3% Similarity=0.031 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHh-------cCCCeeeeecccccCCC
Q psy4403 9 EIVDYGGILKFKAD-------TNASSVMIARAAQDNCS 39 (101)
Q Consensus 9 DI~s~~d~~~~~~~-------tg~dgvMigRgAl~nP~ 39 (101)
.| +++++.++++. .|+|||-++++++..|.
T Consensus 181 GI-~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~d 217 (540)
T 3nl6_A 181 GL-HPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLD 217 (540)
T ss_dssp SC-CTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTCTT
T ss_pred CC-CHHHHHHHHHhhcccccccCceEEEEeHHHhcCCC
Confidence 57 78999999973 78999999999876443
No 228
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Probab=27.04 E-value=9.7 Score=26.62 Aligned_cols=25 Identities=12% Similarity=0.298 Sum_probs=18.2
Q ss_pred CHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 12 DYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
+++.+.++..+-++||+.+|++.|.
T Consensus 212 ~~~N~~~l~~~~diDG~LVGgAsL~ 236 (247)
T 1ney_A 212 NGSNAVTFKDKADVDGFLVGGASLK 236 (247)
T ss_dssp CTTTGGGGTTCTTCCEEEESGGGGS
T ss_pred CHhHHHHHHcCCCCCeeEeehHHHH
Confidence 3344445556678899999999987
No 229
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=26.78 E-value=9.2 Score=29.46 Aligned_cols=28 Identities=21% Similarity=0.077 Sum_probs=23.4
Q ss_pred CCCCH-----------HHHHHHHHhcCCCeeeeecccccC
Q psy4403 9 EIVDY-----------GGILKFKADTNASSVMIARAAQDN 37 (101)
Q Consensus 9 DI~s~-----------~d~~~~~~~tg~dgvMigRgAl~n 37 (101)
.|++. ++++++++ .|||-|.|+-+++.|
T Consensus 335 GIr~~~d~~~~~~~~~~~a~~~l~-aGad~V~igt~~~~~ 373 (555)
T 1jvn_A 335 GIKDIVDVDGTKIPALEVASLYFR-SGADKVSIGTDAVYA 373 (555)
T ss_dssp SCSCEECTTCCEECHHHHHHHHHH-HTCSEEEECHHHHHH
T ss_pred ccccchhcccccchHHHHHHHHHH-cCCCEEEECCHHhhC
Confidence 68888 44888874 799999999999885
No 230
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1
Probab=26.24 E-value=59 Score=22.29 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHH
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRY 60 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~ 60 (101)
-+.++++++.+.-+++ |+=.||+||.. .+ .++.+.+++..++
T Consensus 20 a~~~ei~~~~~~g~i~------GvTTNPsi~~k-~g-~~~~~~i~ei~~i 61 (230)
T 1vpx_A 20 ANLEEIKKGVEWGIVD------GVTTNPTLISK-EG-AEFKQRVKEICDL 61 (230)
T ss_dssp CCHHHHHHHHHTTCCC------EEECCC-------------CHHHHHHHH
T ss_pred CCHHHHHHHHhcCCcC------CCccCHHHHHh-cC-CCHHHHHHHHHhc
Confidence 3677888888765566 45799999998 44 3444555554443
No 231
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=26.14 E-value=20 Score=24.86 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHhcCCC
Q psy4403 8 KEIVDYGGILKFKADTNAS 26 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~d 26 (101)
|.|+|.+|+.+++ +-|++
T Consensus 207 GGIrt~~da~~~i-~aGA~ 224 (239)
T 3ngj_A 207 GGIRTFDDAMKMI-NNGAS 224 (239)
T ss_dssp SSCCSHHHHHHHH-HTTEE
T ss_pred CCCCCHHHHHHHH-Hhccc
Confidence 3799999999999 46777
No 232
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}
Probab=26.11 E-value=50 Score=23.90 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
.+.++++++++++.-.||.|++
T Consensus 248 ~~~~~~~~~~~i~~~~~d~v~i 269 (397)
T 2qde_A 248 SAQELHDLLAIINKGAADGLMI 269 (397)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEE
T ss_pred CcCCHHHHHHHHHcCCCCEEEE
Confidence 7889999999998888998887
No 233
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Probab=25.21 E-value=43 Score=24.32 Aligned_cols=22 Identities=5% Similarity=-0.017 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
.+.++++++++++.-.||.|+|
T Consensus 279 ~~~~~~~~~~~i~~~~~d~v~i 300 (398)
T 2pp0_A 279 MLTSFREHEQLILGNASDFVQP 300 (398)
T ss_dssp TCCSHHHHHHHHHTTCCSEECC
T ss_pred CcCCHHHHHHHHHcCCCCEEEe
Confidence 5777777777777666776665
No 234
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=25.17 E-value=38 Score=23.70 Aligned_cols=21 Identities=5% Similarity=0.116 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCCeeeeeccc
Q psy4403 14 GGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 14 ~d~~~~~~~tg~dgvMigRgA 34 (101)
.++.+..-..|++|+||=...
T Consensus 205 ~~ia~aava~Ga~G~mIE~H~ 225 (267)
T 2nwr_A 205 FPLIRAAVAVGCDGVFMETHP 225 (267)
T ss_dssp HHHHHHHHHHCCSEEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEecC
Confidence 455555557899999996654
No 235
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Probab=24.49 E-value=55 Score=23.39 Aligned_cols=22 Identities=9% Similarity=-0.018 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
.+.+++|++++++.-.||.|++
T Consensus 247 ~~~~~~~~~~~i~~~~~d~v~i 268 (375)
T 1r0m_A 247 SVASASDARKALALGAGGVINL 268 (375)
T ss_dssp TCCSHHHHHHHHHHTSCSEEEE
T ss_pred ccCCHHHHHHHHHhCCCCEEEE
Confidence 6899999999999888998887
No 236
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=24.39 E-value=46 Score=24.28 Aligned_cols=28 Identities=4% Similarity=-0.142 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQD 36 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~ 36 (101)
.+.+++|++++++.-.||.|++=-+-.+
T Consensus 260 ~~~~~~~~~~~i~~~~~d~v~~k~~~~G 287 (401)
T 3sbf_A 260 LFNNPEEWKSLIANRRIDFIRCHVSQIG 287 (401)
T ss_dssp TCCSHHHHHHHHHTTCCSEECCCGGGGT
T ss_pred ccCCHHHHHHHHhcCCCCEEecCccccC
Confidence 7999999999999888998887544443
No 237
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=23.99 E-value=32 Score=24.28 Aligned_cols=30 Identities=3% Similarity=0.114 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403 9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI 40 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i 40 (101)
.| +++.+.++. +||+|.+-+|...-.-|++
T Consensus 249 GI-t~~~i~~~a-~tGVD~isvG~l~~~a~~~ 278 (284)
T 1qpo_A 249 GL-SLQTAATYA-ETGVDYLAVGALTHSVRVL 278 (284)
T ss_dssp SC-CTTTHHHHH-HTTCSEEECGGGTSSBCCC
T ss_pred CC-CHHHHHHHH-hcCCCEEEECHHHcCCCCc
Confidence 44 677787765 6999999999866666654
No 238
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=23.15 E-value=76 Score=20.99 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARA 33 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRg 33 (101)
||+.+.+++.++++..++|.|.-.=|
T Consensus 45 ~D~~d~~~~~~~~~~~~~d~Vih~A~ 70 (319)
T 4b8w_A 45 ADLTDTAQTRALFEKVQPTHVIHLAA 70 (319)
T ss_dssp CCTTSHHHHHHHHHHSCCSEEEECCC
T ss_pred cccCCHHHHHHHHhhcCCCEEEECce
Confidence 49999999999999888998765433
No 239
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=22.77 E-value=80 Score=21.09 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeee
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIA 31 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMig 31 (101)
||+.+.+++.++++..++|.|.-.
T Consensus 52 ~D~~d~~~~~~~~~~~~~d~vih~ 75 (312)
T 2yy7_A 52 VNALDFNQIEHLVEVHKITDIYLM 75 (312)
T ss_dssp CCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred ecCCCHHHHHHHHhhcCCCEEEEC
Confidence 499999999999988889877654
No 240
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=22.66 E-value=47 Score=24.00 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCCeeeeecc
Q psy4403 15 GILKFKADTNASSVMIARA 33 (101)
Q Consensus 15 d~~~~~~~tg~dgvMigRg 33 (101)
.+.++++-+|+|-|||-|=
T Consensus 156 av~evr~llg~DRVmIYrF 174 (327)
T 4e04_A 156 AAQEVREITGFDRVMIYRF 174 (327)
T ss_dssp HHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEE
Confidence 4678889999999999884
No 241
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=22.55 E-value=52 Score=23.68 Aligned_cols=22 Identities=0% Similarity=-0.064 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
.+.++++++++++.-.||.|++
T Consensus 244 ~~~~~~~~~~~i~~~~~d~v~i 265 (382)
T 2gdq_A 244 NMKGPAQYVPLLSQRCLDIIQP 265 (382)
T ss_dssp TCCSHHHHHHHHHTTCCSEECC
T ss_pred CcCCHHHHHHHHHcCCCCEEec
Confidence 7888999999998877888776
No 242
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Probab=22.07 E-value=55 Score=23.62 Aligned_cols=22 Identities=0% Similarity=-0.073 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHhc----CCCeeee
Q psy4403 9 EIVDYGGILKFKADT----NASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~t----g~dgvMi 30 (101)
.+.++++++++++.- .||.|++
T Consensus 269 ~~~~~~~~~~~i~~~~~~~~~d~v~i 294 (392)
T 1tzz_A 269 NLFSHQDARNLLRYGGMRPDRDWLQF 294 (392)
T ss_dssp TCCSHHHHHHHHHHSCCCTTTCEECC
T ss_pred CCCCHHHHHHHHHcCCCccCCcEEEE
Confidence 789999999999888 7898877
No 243
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=21.94 E-value=49 Score=21.59 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCCeeeeecccccCC
Q psy4403 15 GILKFKADTNASSVMIARAAQDNC 38 (101)
Q Consensus 15 d~~~~~~~tg~dgvMigRgAl~nP 38 (101)
++.++++ .|+|.+.+||+....|
T Consensus 170 ~~~~~~~-aGad~vvvGr~I~~a~ 192 (208)
T 2czd_A 170 KAKDAVK-AGADYIIVGRAIYNAP 192 (208)
T ss_dssp HHHHHHH-HTCSEEEECHHHHTSS
T ss_pred CHHHHHH-cCCCEEEEChHHhcCC
Confidence 5666664 5999999999987643
No 244
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=21.89 E-value=67 Score=23.04 Aligned_cols=22 Identities=5% Similarity=-0.105 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
.+.+++|++++++...||.|++
T Consensus 243 ~~~~~~~~~~~~~~~~~d~v~~ 264 (368)
T 3q45_A 243 SCCNSFDAERLIQIQACDSFNL 264 (368)
T ss_dssp TCCSHHHHHHHHHTTCCSEEEE
T ss_pred CcCCHHHHHHHHHcCCCCeEEe
Confidence 6899999999998888888876
No 245
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Probab=21.86 E-value=85 Score=21.05 Aligned_cols=26 Identities=4% Similarity=0.036 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARA 33 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRg 33 (101)
+|+.+.+++.++++..++|.|.-.=|
T Consensus 46 ~D~~d~~~~~~~~~~~~~d~vih~a~ 71 (317)
T 3ajr_A 46 LDVSNRDEIDRAVEKYSIDAIFHLAG 71 (317)
T ss_dssp CCTTCHHHHHHHHHHTTCCEEEECCC
T ss_pred ecCCCHHHHHHHHhhcCCcEEEECCc
Confidence 49999999999998778887765433
No 246
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=21.84 E-value=55 Score=14.43 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=5.4
Q ss_pred cCCCccCC
Q psy4403 36 DNCSIFSP 43 (101)
Q Consensus 36 ~nP~iF~~ 43 (101)
+.|++|..
T Consensus 3 grpsvfts 10 (26)
T 2xl1_A 3 GRPSVFTS 10 (26)
T ss_pred CCCceeec
Confidence 45777765
No 247
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=21.64 E-value=66 Score=22.97 Aligned_cols=55 Identities=7% Similarity=0.138 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHhcCCCeeeeecccccCCCccCCC---------CCC-CCHHHHHHHHHHHHHHhc
Q psy4403 11 VDYGGILKFKADTNASSVMIARAAQDNCSIFSPT---------KGI-QDIHQMIKEYLRYCVDYD 65 (101)
Q Consensus 11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~---------~~~-~~~~~~~~~~l~~~~~~~ 65 (101)
-|.+|..+.+..+|+|++||==-.-+.+..+.+. .+. ..+-+.+...+.+..++.
T Consensus 79 Esl~DTarvLs~~~~D~iviR~~~~~~~~~la~~~~vPVINagdg~~~HPtQaLaDl~Ti~e~~g 143 (304)
T 3r7f_A 79 ETLYDTIRTLESIGVDVCVIRHSEDEYYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYEEFN 143 (304)
T ss_dssp SCHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHCSSCEEESCCTTSCCHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHhcCCEEEEecCChhHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhC
Confidence 5889999999999999877633222333322221 111 123466666666665554
No 248
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=21.61 E-value=37 Score=21.42 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=20.5
Q ss_pred CHHHHHHHHHhc-CCCeeeeeccccc
Q psy4403 12 DYGGILKFKADT-NASSVMIARAAQD 36 (101)
Q Consensus 12 s~~d~~~~~~~t-g~dgvMigRgAl~ 36 (101)
+++|-+.+.+.+ .+|.|++||+...
T Consensus 24 ~~~~~~~~~~~~~~~dailmGr~T~~ 49 (168)
T 1cz3_A 24 SFEDRKNFRKITTEIGNVVMGRITFE 49 (168)
T ss_dssp CHHHHHHHHHHHHHHTEEEEEHHHHH
T ss_pred ChHHHHHHHHHHHhCCEEEEChHHhh
Confidence 678887888777 5899999998664
No 249
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=21.57 E-value=80 Score=19.87 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.4
Q ss_pred CHHHHHHHHHhcCCCeeeeecccc
Q psy4403 12 DYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 12 s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
-++|...+.+.|..+.|+.||-..
T Consensus 24 ~~~d~~~f~~~t~~~~vimGRkTy 47 (164)
T 1zdr_A 24 LPADLAYFKRVTMGHAIVMGRKTF 47 (164)
T ss_dssp CHHHHHHHHHHHTTSEEEEEHHHH
T ss_pred CHHHHHHHHHHhcCCEEEECCcHH
Confidence 478888888889999999999644
No 250
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}
Probab=21.48 E-value=61 Score=23.30 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
.+.+++|++++++...||.|++
T Consensus 250 ~~~~~~~~~~~i~~~~~d~v~~ 271 (377)
T 3my9_A 250 SCFDAVDLMEVVRRQAADAISV 271 (377)
T ss_dssp TCSSHHHHHHHHHHTCCSEEEC
T ss_pred ccCCHHHHHHHHHcCCCCEEEe
Confidence 6888888888888777887765
No 251
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=21.38 E-value=57 Score=23.44 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
.+.+++|++++++.-.||.|++
T Consensus 256 ~~~~~~~~~~~i~~~~~d~v~~ 277 (372)
T 3tj4_A 256 QLYTVDAFRSFIDAGAVAYVQP 277 (372)
T ss_dssp TCCSHHHHHHHHHTTCCSEECC
T ss_pred CccCHHHHHHHHHcCCCCEEEe
Confidence 6788888888887777776654
No 252
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=21.13 E-value=79 Score=20.90 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeee
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIA 31 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMig 31 (101)
+|+.+.+++.+.++..++|.|.-.
T Consensus 40 ~D~~d~~~~~~~~~~~~~d~vi~~ 63 (287)
T 3sc6_A 40 LDITNISQVQQVVQEIRPHIIIHC 63 (287)
T ss_dssp SCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEC
Confidence 499999999999998899977644
No 253
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=21.00 E-value=8.5 Score=25.62 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCCeeeeeccc
Q psy4403 13 YGGILKFKADTNASSVMIARAA 34 (101)
Q Consensus 13 ~~d~~~~~~~tg~dgvMigRgA 34 (101)
++.+.+++ ..|+|+|-+||+.
T Consensus 177 ~~~~~~~~-~aGAd~vvvGsaI 197 (218)
T 3jr2_A 177 PEDIYLFE-GIKTKTFIAGRAL 197 (218)
T ss_dssp GGGGGGGT-TSCEEEEEESGGG
T ss_pred HHHHHHHH-HcCCCEEEEchhh
Confidence 44444433 3455555555543
No 254
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=20.97 E-value=72 Score=22.93 Aligned_cols=25 Identities=12% Similarity=-0.053 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403 10 IVDYGGILKFKADTNASSVMIARAAQ 35 (101)
Q Consensus 10 I~s~~d~~~~~~~tg~dgvMigRgAl 35 (101)
..+++++.++. +||+|.+=++=|-.
T Consensus 171 yT~Peea~~Fv-~TgvD~LAvaiGt~ 195 (306)
T 3pm6_A 171 LTTPEESEEFV-ATGINWLAPAFGNV 195 (306)
T ss_dssp CCCHHHHHHHH-TTTCSEECCCSSCC
T ss_pred CCCHHHHHHHH-HcCCCEEEEEcCcc
Confidence 68999999999 79999777766654
No 255
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=20.93 E-value=59 Score=22.65 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCeeeeecc
Q psy4403 13 YGGILKFKADTNASSVMIARA 33 (101)
Q Consensus 13 ~~d~~~~~~~tg~dgvMigRg 33 (101)
.+|..++...-.+++||.+||
T Consensus 57 a~dL~~a~~Dp~i~aI~~~rG 77 (274)
T 3g23_A 57 LSAFLECANDDAFEAVWFVRG 77 (274)
T ss_dssp HHHHHHHHTCTTCSEEEESCC
T ss_pred HHHHHHHhhCCCCCEEEEeec
Confidence 567777887788999999998
No 256
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=20.82 E-value=60 Score=23.79 Aligned_cols=23 Identities=4% Similarity=-0.090 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHhcCCCeeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMIA 31 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMig 31 (101)
.+.+++|++++++.-.||.|++-
T Consensus 237 ~i~~~~~~~~~l~~~a~d~v~~d 259 (405)
T 3rr1_A 237 RMFSRFDFKRVLEAGGVSILQPD 259 (405)
T ss_dssp TCCSHHHHHHHHHHCCCSEECCB
T ss_pred CcCCHHHHHHHHHHhCCCeEEEC
Confidence 78999999999988888888763
No 257
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=20.75 E-value=1.1e+02 Score=23.52 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=14.9
Q ss_pred CCCCHHHH---HHHHHhcCCCeeee
Q psy4403 9 EIVDYGGI---LKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~---~~~~~~tg~dgvMi 30 (101)
.+.+++.+ .+.++..|+||||+
T Consensus 29 ~~~~~~~l~~~L~~LK~~GVdGVmv 53 (498)
T 1fa2_A 29 VFPDKEKVEDELKQVKAGGCDGVMV 53 (498)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred eeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 45555444 45667789999997
No 258
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=20.70 E-value=55 Score=23.64 Aligned_cols=19 Identities=5% Similarity=0.001 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCCeeeeecc
Q psy4403 15 GILKFKADTNASSVMIARA 33 (101)
Q Consensus 15 d~~~~~~~tg~dgvMigRg 33 (101)
.+.++++-+|+|-|||-|=
T Consensus 169 tv~evr~ll~~DRV~IYrF 187 (337)
T 2ool_A 169 AASEVRRITGFDRIKVYQF 187 (337)
T ss_dssp HHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHhCCCeeEEEEE
Confidence 4678889999999999874
No 259
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=20.60 E-value=94 Score=21.08 Aligned_cols=23 Identities=4% Similarity=0.130 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHhcCCCeeee
Q psy4403 8 KEIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMi 30 (101)
+|+.+.+++.++.+..++|.|.-
T Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih 84 (341)
T 3enk_A 62 TDVSDERALARIFDAHPITAAIH 84 (341)
T ss_dssp CCTTCHHHHHHHHHHSCCCEEEE
T ss_pred eecCCHHHHHHHHhccCCcEEEE
Confidence 49999999999999888887654
No 260
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=20.54 E-value=63 Score=23.64 Aligned_cols=26 Identities=4% Similarity=-0.203 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHhcC-----CCeeeeecccc
Q psy4403 10 IVDYGGILKFKADTN-----ASSVMIARAAQ 35 (101)
Q Consensus 10 I~s~~d~~~~~~~tg-----~dgvMigRgAl 35 (101)
..+++++.++.++|| +|.+=++=|-.
T Consensus 181 yT~Peea~~Fv~~tg~~~~gvD~LAvaiGt~ 211 (349)
T 3elf_A 181 YTSPEDFEKTIEALGAGEHGKYLLAATFGNV 211 (349)
T ss_dssp CCCHHHHHHHHHHHTTSTTSCEEEEECSSCB
T ss_pred CCCHHHHHHHHHHhCCCCCCceEEEEecCCc
Confidence 588999999999999 89877776654
No 261
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}
Probab=20.26 E-value=43 Score=24.14 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHhcCCCeeee
Q psy4403 9 EIVDYGGILKFKADTNASSVMI 30 (101)
Q Consensus 9 DI~s~~d~~~~~~~tg~dgvMi 30 (101)
.+.+++|++++++.-.||.|++
T Consensus 253 ~~~~~~~~~~~l~~~~~d~v~~ 274 (374)
T 3sjn_A 253 SLTTRYEFQEFITKSNADIVQP 274 (374)
T ss_dssp TCCHHHHHHHHHHHHCCSEECC
T ss_pred CcCCHHHHHHHHHcCCCCEEEe
Confidence 7888999999998888888765
No 262
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Probab=20.19 E-value=85 Score=21.52 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeec
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIAR 32 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigR 32 (101)
||+.+.+++.++++..++|.|.-.=
T Consensus 57 ~Dl~d~~~~~~~~~~~~~d~vih~A 81 (361)
T 1kew_A 57 ADICDSAEITRIFEQYQPDAVMHLA 81 (361)
T ss_dssp CCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCCCCHHHHHHHHhhcCCCEEEECC
Confidence 4999999999999877888776543
No 263
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=20.03 E-value=86 Score=21.39 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHhcCCCeeeeecc
Q psy4403 8 KEIVDYGGILKFKADTNASSVMIARA 33 (101)
Q Consensus 8 GDI~s~~d~~~~~~~tg~dgvMigRg 33 (101)
+|+.+.+++.++++..++|.|.-.=|
T Consensus 72 ~Dl~d~~~~~~~~~~~~~D~vih~A~ 97 (330)
T 2pzm_A 72 GSVTDAGLLERAFDSFKPTHVVHSAA 97 (330)
T ss_dssp CCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred eeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 49999999999998778997766544
Done!