RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4403
(101 letters)
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
c.1.4.1
Length = 318
Score = 31.4 bits (72), Expect = 0.031
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 11/53 (20%)
Query: 23 TNASSVMIARAAQDNCSIFS-----------PTKGIQDIHQMIKEYLRYCVDY 64
+ +++AR A IF ++I + + +L +
Sbjct: 205 SGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKT 257
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 27.8 bits (61), Expect = 0.61
Identities = 7/62 (11%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 12 DYGGILKFKADTNASSVMIARAA---QDNCSIFSPTKG----IQDIHQMIKEYLRYCVDY 64
GG+ + + +++ + + ++ + +M+ E+ RYC++
Sbjct: 78 HTGGMSRPFLTSTGVQMLLRKLIEEHKQEFKVYQKASDKSGFTAQVERMLTEFKRYCLEP 137
Query: 65 DN 66
++
Sbjct: 138 ED 139
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 1.7
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 9/25 (36%)
Query: 48 QDIHQM---IKEYLRYCVDYDNSAP 69
Q + ++ +K Y D+SAP
Sbjct: 20 QALKKLQASLKLYA------DDSAP 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 5.8
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 47 IQDIH----QMIKEYLRYCVDYDNSAPNSKYC--VQSMLGSQQES 85
I D +++ L + + + SKY ++ L ++ E+
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex,
oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter
sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B*
3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Length = 262
Score = 24.6 bits (54), Expect = 6.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 86 PLGKKFLESQTLEQIW 101
+ +F + LE W
Sbjct: 64 KVPARFTHNSPLEIAW 79
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer,
proton pumping, membrane protein, cell inner membrane,
cell membrane, copper; HET: HEA LDA LMT; 2.25A
{Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Length = 298
Score = 24.7 bits (54), Expect = 6.4
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 86 PLGKKFLESQTLEQIW 101
P+ +F + +E IW
Sbjct: 95 PVPARFTHNTPIEVIW 110
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 24.7 bits (53), Expect = 6.5
Identities = 3/30 (10%), Positives = 12/30 (40%)
Query: 47 IQDIHQMIKEYLRYCVDYDNSAPNSKYCVQ 76
+ +QM + ++ P++++
Sbjct: 154 VNRTYQMHLGGKQREYEFFGLTPDTEFLGT 183
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 24.5 bits (54), Expect = 7.1
Identities = 2/13 (15%), Positives = 4/13 (30%), Gaps = 1/13 (7%)
Query: 23 TNASSVMIA-RAA 34
S + + A
Sbjct: 554 IQNSVYAVGEKCA 566
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural
genomics, MCSG; HET: ADP; 1.80A {Bordetella
parapertussis}
Length = 173
Score = 24.4 bits (54), Expect = 7.1
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 15 GILKFKADTNASSVMIARA 33
G+L A+ + S+M R
Sbjct: 29 GVLTL-AERSIRSIMTPRT 46
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 24.4 bits (54), Expect = 7.9
Identities = 4/13 (30%), Positives = 7/13 (53%), Gaps = 1/13 (7%)
Query: 23 TNASSVMIA-RAA 34
+A+ + IA A
Sbjct: 505 IHAAVLAIAETFA 517
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 24.5 bits (54), Expect = 7.9
Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 28 VMIARAAQDNCSIFS-------PTKGIQDIHQMIKEYLRYC 61
VM+ RA ++ + ++ + Y
Sbjct: 222 VMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYL 262
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 24.1 bits (53), Expect = 8.9
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 17/60 (28%)
Query: 30 IARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGSQQESPLGK 89
+ + N + +K I+ +H+ I+ + + + E PLG+
Sbjct: 170 LMKDTTLNWKMVDASKSIEAVHEDIRVL-----------------SEDAIATATEKPLGE 212
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 24.4 bits (54), Expect = 9.3
Identities = 2/13 (15%), Positives = 5/13 (38%), Gaps = 1/13 (7%)
Query: 23 TNASSVMIA-RAA 34
T ++ + A
Sbjct: 547 TQGPIYLVGKQGA 559
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 24.4 bits (54), Expect = 9.8
Identities = 5/13 (38%), Positives = 7/13 (53%), Gaps = 1/13 (7%)
Query: 23 TNASSVMIA-RAA 34
N + +MI R A
Sbjct: 511 PNITVMMIGERCA 523
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 24.1 bits (53), Expect = 9.9
Identities = 3/14 (21%), Positives = 6/14 (42%), Gaps = 1/14 (7%)
Query: 23 TNASSVMIA-RAAQ 35
+ + A +AA
Sbjct: 524 PQGTLMSAAEQAAA 537
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.382
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,435,368
Number of extensions: 68915
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 19
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)