RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4403
         (101 letters)



>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
           lactis, isozyme B [TaxId: 1358]}
          Length = 311

 Score = 26.9 bits (58), Expect = 0.39
 Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 6/40 (15%)

Query: 20  KADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLR 59
                AS+V +  A   +  +         I   + E + 
Sbjct: 259 MYMAGASAVAVGTANFADPFVCP------KIIDKLPELMD 292


>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
          5661]}
          Length = 236

 Score = 23.9 bits (51), Expect = 4.4
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 21 ADTNASSVMIARAAQDNCSIFSPTKGIQ--DIHQMIK--EYLRYCVD 63
           D++A S ++ ++ +    +FSP    +  D+  + +  E L+   D
Sbjct: 13 DDSHALSQLLKKSYRWYSPVFSPRNVPRFADVSSITESPETLKAIRD 59


>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine
           phosphate kinase (HMP-phosphate kinase, ThiD)
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 266

 Score = 24.0 bits (51), Expect = 4.8
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 25/108 (23%)

Query: 2   DPSGGSKEIVDYGGILKFKAD--------TNASSVMIARAAQDNCSIFSPTKGIQDIHQM 53
           DPSGG        GI    AD            SV+ A  A++       T G+Q ++++
Sbjct: 13  DPSGG-------AGIQ---ADLKTFSALGAYGCSVITALVAEN-------TCGVQSVYRI 55

Query: 54  IKEYLRYCVDYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQIW 101
             +++   +D   S          ML          + L+   +  + 
Sbjct: 56  EPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRHHVRNVV 103


>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase)
           {Thermus aquaticus [TaxId: 271]}
          Length = 305

 Score = 23.5 bits (50), Expect = 5.6
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 15  GILKFKADT---NASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSA 68
           GI K   DT    A + +I  A   N   F P K +    + +KE ++  ++   S 
Sbjct: 246 GIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 356,108
Number of extensions: 13530
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 11
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)