BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4404
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 44/80 (55%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C + C SD + RHIR HTG+K F C C S+ L H++ HTGEKPF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99 CTICSHKAARKDHMKRHLQL 118
C IC K AR D KRH ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 44/80 (55%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C + C SD + RHIR HTG+K F C C S+ L H++ HTGEKPF
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 99 CTICSHKAARKDHMKRHLQL 118
C IC K AR D KRH ++
Sbjct: 64 CDICGRKFARSDERKRHTKI 83
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 44/80 (55%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C + C SD + RHIR HTG+K F C C S+ L H++ HTGEKPF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99 CTICSHKAARKDHMKRHLQL 118
C IC K AR D KRH ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C + C +S ++ RHIR HTG+K F C C S+ L H++ HTGEKPF
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99 CTICSHKAARKDHMKRHLQL 118
C IC K AR D KRH ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 43/80 (53%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C + C S + RHIR HTG+K F C C S+ L H++ HTGEKPF
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99 CTICSHKAARKDHMKRHLQL 118
C IC K AR D KRH ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 43/80 (53%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C + C S + RHIR HTG+K F C C S+ L H++ HTGEKPF
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99 CTICSHKAARKDHMKRHLQL 118
C IC K AR D KRH ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 43/80 (53%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C + C S + RHIR HTG+K F C C S+ L H++ HTGEKPF
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99 CTICSHKAARKDHMKRHLQL 118
C IC K AR D KRH ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 31 SRPDVSFKYV--CLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYN 86
S PD+ + + C Y C+ S H++ H+R HTGEK + C C++R ++ L
Sbjct: 6 SGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTR 65
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHN 121
H ++HTG KPF+C +C+ +R DH+ H++ N
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%)
Query: 46 CSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHK 105
C S ++++H R HTGEK + CP C SQ S L H + HTGEKP+KC C
Sbjct: 10 CGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKS 69
Query: 106 AARKDHMKRHLQLKHN 121
+R DH+ RH + N
Sbjct: 70 FSRSDHLSRHQRTHQN 85
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNAD 123
EK + CP C SQ S L H + HTGEKP+KC C ++ +++H Q H +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGE 58
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 46 CSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
C S +++H R HTGEK + CP C S+ L H + H +K
Sbjct: 38 CGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C + C ++ HIR HTG+K F C C SQQ++L H++ HTGEKPF
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 99 CTICSHKAA----RKDHMKRHLQLK 119
C IC K A R H K HL+ K
Sbjct: 65 CDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKP 96
++C Y C+ H++ H R+HTGEK + C CE R S+ L H +RHTG KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 97 FKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLP 131
F+C C K +R DH+K H + H + + P
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWP 100
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C ++ C SD ++RH RRHTG K F C C+ + S+ L H + HTGEKPF
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 99 CTI--CSHKAARKDHMKRH 115
C C K AR D + RH
Sbjct: 97 CRWPSCQKKFARSDELVRH 115
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C + C ++ HIR HTG+K F C C SQ + L H++ HTGEKPF
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 99 CTICSHKAA----RKDHMKRHLQLK 119
C IC K A R H K HL+ K
Sbjct: 65 CDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKP 96
+ C Y C S H++ H+R HTGEK +HC C ++ ++ L H ++HTG +P
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 97 FKCTICSHKAARKDHMKRHLQ 117
F+C C +R DH+ H++
Sbjct: 67 FQCQKCDRAFSRSDHLALHMK 87
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRH 91
Y C + C + SD + RH R+HTG + F C C+ S+ L H+KRH
Sbjct: 37 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKP 96
+ C Y C S H++ H+R HTGEK +HC C ++ ++ L H ++HTG +P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 97 FKCTICSHKAARKDHMKRHLQ 117
F+C C +R DH+ H++
Sbjct: 66 FQCQKCDRAFSRSDHLALHMK 86
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRH 91
Y C + C + SD + RH R+HTG + F C C+ S+ L H+KRH
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 55 HMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKR 114
H+R H R HTGEK + CP C S++ L+ H + HTGEKP+KC C +R+D +
Sbjct: 120 HLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNV 179
Query: 115 HLQLKHNADLSS 126
H Q H +S
Sbjct: 180 H-QRTHTGKKTS 190
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C +C SDH+ H R HTGEK + CP C S + L H + HTGEKP+K
Sbjct: 22 YACP--ECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 99 CTICSHKAARKDHMKRHLQLKHNAD 123
C C +++ +++ H Q H +
Sbjct: 80 CPECGKSFSQRANLRAH-QRTHTGE 103
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 56 MRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+R H R HTGEK + CP C SQ + L H + HTGEKP+KC C +R+D++ H
Sbjct: 93 LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Query: 116 LQLKHNAD 123
Q H +
Sbjct: 153 -QRTHTGE 159
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 56 MRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ RH R HTGEK + CP C SQ++ L H + HTGEKP+ C C ++ H++ H
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Query: 116 LQLKHNAD 123
Q H +
Sbjct: 125 -QRTHTGE 131
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 65 GEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNAD 123
GEK + CP C S+ L H + HTGEKP+KC C + K + RH Q H +
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGE 75
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 54 DHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
D++ H R HTGEK + CP C S++ AL H + HTG+K
Sbjct: 147 DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 54 DHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMK 113
D ++ H+R HTG K + C C+Y + S+L HL+ H+ E+PFKC IC + + +
Sbjct: 22 DKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLT 81
Query: 114 RHLQLKHNAD 123
HL+ H D
Sbjct: 82 VHLR-SHTGD 90
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 79 SQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQL 118
S++ L H++ HTG KP+KC C + AA + +HL++
Sbjct: 19 SRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
K F C C S+ L H++ HTGEKPF C IC K AR D KRH ++H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 12 RLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMR----RHIRRHTGEK 67
R S EL+ H T +++ P+ + +VC +++C G S + HIR HTGEK
Sbjct: 33 RTFSTMHELVTHV-TMEHVGGPEQN-NHVCYWEECP-REGKSFKAKYKLVNHIRVHTGEK 89
Query: 68 AFHCP--HCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRHLQLKHNAD 123
F CP C ++ L H + HTGEKPFKC C + A K+H+ + H +D
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSD 148
Query: 124 LSS 126
S
Sbjct: 149 KSG 151
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 55 HMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE--KPFKCTICSHKAARKDHM 112
H+ RH H+GEK + CP C R ++ + H++ H G KP+ C C +R DH+
Sbjct: 22 HLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHL 81
Query: 113 KRHLQLKHNADLSS 126
H++ H+ S
Sbjct: 82 NGHIKQVHSGPSSG 95
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 67 KAFHCP--HCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQ 117
+ + CP C+ R S+ L H++ HTG+KPF+C IC +R DH+ H++
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHT 92
Y C + C SD + RHIR HTG+K F C C S+ L H++ HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR-- 90
P V +Y+C + C + ++ H+ +HTGEK F C E C + +HL R
Sbjct: 7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK--EEGCEKGFTSLHHLTRHS 64
Query: 91 --HTGEKPFKCTI--CSHKAARKDHMKRHLQLKHNADLSSMI--------KLPKDNYLDV 138
HTGEK F C C + K +MK+H HN + + K N L V
Sbjct: 65 LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 139 ISFLYLDQ 146
F + Q
Sbjct: 125 HQFSHTQQ 132
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTG 93
YVC ++ C + ++ H HT + + CPH C+ R S S L H K H G
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR----HTG 93
+Y+C + C + ++ H+ +HTGEK F C E C + +HL R HTG
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCK--EEGCEKGFTSLHHLTRHSLTHTG 60
Query: 94 EKPFKCTI--CSHKAARKDHMKRHLQLKHN 121
EK F C C + K +MK+H HN
Sbjct: 61 EKNFTCDSDGCDLRFTTKANMKKHFNRFHN 90
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 5 ICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHT 64
IC + + N L+ +LS+ + C + C + H+ RH HT
Sbjct: 5 ICSFADCGAAYNKNWKLQ-----AHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 59
Query: 65 GEKAFHC--PHCEYRCSQQSALYNHLKR 90
GEK F C C+ R + ++ + H R
Sbjct: 60 GEKNFTCDSDGCDLRFTTKANMKKHFNR 87
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHL 116
RH+ H G + + C C + + L H+K HTG KP++C IC+ + +D RH+
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQL 118
+G+K + C C + +S H+ H G +P+ C +C K K H+ H+++
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 65 GEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
G + C +C L HL+ HTGEKP+KC C + AA+K ++ HL+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRH 91
H+R HTGEK + C CEY +Q+++L HL+RH
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 68 AFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLS 125
+F C C ++Q L H + HT EKP+ C +C+ R+D + RH Q H+ +L
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTG 93
D Y+C+ K SY S +RRH H+ EK + C +CE H HTG
Sbjct: 18 DGRVYYICIVCKRSYVCLTS--LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 94 EKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKL 130
E+ ++C C M H++ H+ D S KL
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKL 112
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 53 SDHMRRHIRRHTGEKAFHCP--HCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAAR 108
S ++RH HTGEK F C C R S L H++ HTG++P+ C C+ K A+
Sbjct: 47 SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106
Query: 109 KDHMKRHL 116
++K H+
Sbjct: 107 STNLKSHI 114
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 40 VCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
C ++ C+ ++ MR+H+ H G + C C + S L H HTGEKPF+C
Sbjct: 7 ACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 100 TI--CSHKAARKDHMKRHLQLKHNAD 123
T C + + +++ H+++ H D
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRI-HTGD 90
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP--HCEYRCSQQSALYNHLKRHTGEK 95
+ C ++ C ++R H+R HTG++ + CP C + +Q + L +H+ H K
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 31/103 (30%)
Query: 55 HMRRHIRRHTGEKAFHCPHCE------------------------YRCS-------QQSA 83
+++ H R+HTGEK F CP C + CS ++
Sbjct: 22 YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRME 81
Query: 84 LYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS 126
L H+ HTGE P+KC+ CS + +K ++ H+ H+ S
Sbjct: 82 LRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+G CP C + + L H ++HTGEKPF+C C RK+++ H
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQL 118
+K + C C+ + L +H HTGEKP++C IC + R ++K H ++
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
HTGEK + C C + ++ + L H + H+GEKP
Sbjct: 40 HTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLS 125
EK + C C S+ S L H + HTGEKP+KC C ++ + H ++ H + S
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HTSGPS 70
Query: 126 S 126
S
Sbjct: 71 S 71
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHT 92
Y C+ +C S + +H R HTGEK + C C SQ S L NH + HT
Sbjct: 15 YGCV--ECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 41 CLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKR-HTGEKPF 97
C ++ C ++++ H+R HTGEK + C H C S S H R H+ EKP+
Sbjct: 70 CTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPY 129
Query: 98 KCTI--CSHKAARKDHMKRHLQLKHN 121
C + C+ + +++H++ H
Sbjct: 130 VCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 81 QSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRHLQ 117
Q L H++RHTGEKP KCT C +R +++K HL+
Sbjct: 52 QYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR 90
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHM 112
S + H+ H+ + + C +C R Q+S + H HTGEKP KC +C ++ ++
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL 73
Query: 113 KRH 115
H
Sbjct: 74 ITH 76
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 5 ICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHT 64
IC R + S LL H T RP Y C Y +H SD M++H HT
Sbjct: 6 ICGKSFKRSSTLSTHLLIHSDT-----RP-----YPCQYCGKRFHQ-KSD-MKKHTFIHT 53
Query: 65 GEKAFHCPHCEYRCSQQSALYNHLKRHTG 93
GEK C C SQ S L H ++HTG
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 68 AFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+F C C + S L HL H+ +P+ C C + +K MK+H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
+++C + C H S ++ H R HT E+ + C C +Q L +H H+ EKPF
Sbjct: 17 EFICKF--CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 98 KCTICS 103
KC C
Sbjct: 75 KCQECG 80
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+K F C C ++ L H + HT E+P+ C IC R+DH++ H
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 72 PHCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRH 115
P C + S L H + HTGEKPF C+ C + AR D + RH
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP--HCEYRCSQQSALYNHLKRH 91
++C + C S H++ H R HTGEK F C CE R ++ L H + H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.017, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
T EK F C C+ Q+SAL +H HTGEKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK----PFKCTICSHKAARKDHMKRHL 116
R HTGEK + C HC+ Q+ L H KR+ F C+ C R++ M RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 89 KRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADL 124
+ HTGEKP+ C+ C +K + H + H+ +
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 43
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS 126
+ + C C S S L H + HTGEKP+KC C ++ H+ H ++ + SS
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
+Y C +C +S + +H R HTGEK + C C Q+S L H + HTG P
Sbjct: 18 RYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK F C C R +Q S L++H + HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK F C C R +Q S L++H + HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLK 89
KY+C ++C +++HIR HT + +HC +C + + L H+K
Sbjct: 1 KYIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 71 CPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLK 119
C C R + S L H++ HT +P+ CT C+ K ++ +H++ K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 89 KRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLS 125
+ H+GEKP++C IC + + MK H+ KH +++
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA 44
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNH-LKRHTGE-KPFKCTICSHKAARKDHMKRHLQL 118
R H+GEK + C C R +Q + H L++HT F C C ARK + HL+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 119 KHN 121
+H+
Sbjct: 68 QHS 70
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 53 SDHMRRHI-RRHTGEKA-FHCPHCEYRCSQQSALYNHLKR 90
S M+ HI ++HT A FHCPHC+ +++S L HL++
Sbjct: 28 SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
K + CP C Y + ++ L HL++HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 45 KCSYHTGNSDHMRRHIRRHTGEK 67
+CSY + ++ H+R+HTGEK
Sbjct: 14 QCSYASAIKANLNVHLRKHTGEK 36
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
P +++C Q C G + H+R H+R HTGE+
Sbjct: 3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK F C C S++SAL H K HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C +Q S L NH + HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C + +S L+ H K HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C SQ+S L H + HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 92 TGEKPFKCTICSHKAARKDHMKRHLQ 117
+GEKP+ C +C + RKD M H++
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVR 31
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTG 93
YVC ++ C + ++ H HT + + CPH C+ R S S L H K H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTG 93
YVC ++ C + ++ H HT + + CPH C+ R S S L H K H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2FGT|A Chain A, Crystal Structure Of Yych From Bacillus Subtilis
Length = 417
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 29 NLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHL 88
NLS+ V F+ L Q SY TG + TG H SQQ + Y +
Sbjct: 235 NLSQRQVQFQQRNLVQSTSYQTGELIKKSQKYLEDTGSWTDHYQFFNINDSQQLSFYIFM 294
Query: 89 KR----HTGEKPFKCT 100
+ ++ KPF T
Sbjct: 295 DQIPVINSTAKPFGAT 310
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK F C C+ + +S L H + HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.56, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK F C C S S L H + HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|1D1P|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1)
pdb|1D1P|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1)
Length = 160
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLK 89
+ +P +S ++CL C M I +H EKA + E R ++ + +
Sbjct: 2 IEKPKISVAFICLGNFCR------SPMAEAIFKHEVEKA----NLENRFNKIDS-FGTSN 50
Query: 90 RHTGEKPF--KCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDN 134
H GE P +IC + +H + ++ KH + +I + + N
Sbjct: 51 YHVGESPDHRTVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESN 97
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 94 EKPFKCTICSHKAARKDHMKRHLQL 118
E+PFKC C R+ H+ HL+L
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRL 34
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
+K F C C+ +Q S+L H + HTGEKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 0.71, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
+G K + C C +S L H++ HTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRH 91
TG K F CP C++ S+ L H KRH
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 92 TGEKPFKCTICSHKAARKDHMKRH 115
TG KPF+C C +R DH+ H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALH 26
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C SQ S L H + HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK F C C Q L +HL+ HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
++C + C SD ++RH R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C SQ+ +L H++ HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
+GEK F C CE S +S L H + H EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C +Q++ L H K HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 94 EKPFKCTICSHKAARKDHMKRHLQLKHNADLSS 126
EKP++C +CS +K H+ +H Q H + S
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQH-QKTHTGEKPS 41
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C S +S L H++ H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
+GEK + C C SQ+ +L H + HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C SQ + L H + HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C +Q++ L H + HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 66 EKAFHC--PHCEYRCSQQSALYNHLKRHTGEKP 96
EK F C P C +R S+ L H + H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 27.3 bits (59), Expect = 3.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
+ C + C + SD + RH R H+G K
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVK 41
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 95 KPFKCTICSHKAARKDHMKRHLQ 117
KPF+C C K +R DH+K H +
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTR 23
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
K F C C+ + S+ L H + HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 46 CSYHTGNSDHMRRHIRRHTGEK 67
C SDH++ H R HTGEK
Sbjct: 8 CQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHT---GEKPFKCTICSHKAARKDHMKRHLQLKH 120
+G C C + C Q+++L H ++H F C C + + D + H H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 121 NADL 124
A L
Sbjct: 63 PALL 66
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C SQ S L H + HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
K + C C SQ S L H + HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C S+ S L H K HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHN 121
E+ F C C S L H + H G +P C C + + RHL++ N
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 81 QSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS 126
++AL H + H ++PFKC CS + ++ +H++ K + D+S
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KFHGDMSG 66
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 56 MRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE 94
+R H R H ++ F C +C + Q S L H+K+ G+
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
K F C C +++S L H K HTGEKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRH 91
R TG K F CP C+ S+ L H KRH
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 92 TGEKPFKCTICSHKAARKDHMKRH 115
TG KPF+C C +R DH+ H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALH 30
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK F C C +Q+ L H + HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLK-RHTGEK 95
K + C +CEYR + S L H+K +H+ EK
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
K F C CEY +S L H+ RH+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 95 KPFKCTICSHKAARKDHMKRHL 116
KPFKC++C + K ++K H+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHM 29
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK F C C S L H + HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C +Q S L NH + HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C+ SQ S+L H H GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|3C6A|A Chain A, Crystal Structure Of The Rb49 Gp17 Nuclease Domain
pdb|3C6H|A Chain A, Crystal Structure Of The Rb49 Gp17 Nuclease Domain
pdb|3C6H|B Chain B, Crystal Structure Of The Rb49 Gp17 Nuclease Domain
Length = 232
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 23 HCKTCKNLSRPDVSFKYVCLYQKC 46
H T + PD+ FKY+ +Y +C
Sbjct: 95 HSNTTSHFILPDIVFKYLMMYNEC 118
>pdb|1D1Q|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Substrate
Pnpp
pdb|1D1Q|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Substrate
Pnpp
Length = 161
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLK 89
+ +P +S ++ L C M I +H EKA + E R ++ + +
Sbjct: 3 IEKPKISVAFIALGNFCR------SPMAEAIFKHEVEKA----NLENRFNKIDS-FGTSN 51
Query: 90 RHTGEKPF--KCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDN 134
H GE P +IC + +H + ++ KH + +I + + N
Sbjct: 52 YHVGESPDHRTVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESN 98
>pdb|1D2A|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Activator
Adenine
pdb|1D2A|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Activator
Adenine
Length = 160
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLK 89
+ +P +S ++ L C M I +H EKA + E R ++ + +
Sbjct: 2 IEKPKISVAFIALGNFCR------SPMAEAIFKHEVEKA----NLENRFNKIDS-FGTSN 50
Query: 90 RHTGEKPF--KCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDN 134
H GE P +IC + +H + ++ KH + +I + + N
Sbjct: 51 YHVGESPDHRTVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESN 97
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C +++S L+ H + HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
+GEK + C C S +S L H + HTGEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGE 94
+GEK + C C +Q S L H + HTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C +Q S L H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 26.9 bits (58), Expect = 5.0, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 92 TGEKPFKCTICSHKAARKDHMKRH 115
+GEKP+ CT C RK H H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITH 29
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK F C C S Y+H + H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
+GEK + C C + +S L H HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 26.6 bits (57), Expect = 6.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
K + C HC+ + + AL H++ HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 97 FKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDN 134
+ C +C+ + + + HL+ H D S+++ P N
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMIN 154
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLK-RHTGEK 95
K + C +CE+R + S L H+K +H+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 97 FKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDN 134
+ C +C+ + + + HL+ H D S+++ P N
Sbjct: 99 YVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMIN 136
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGE 94
+GEK + C C +S L H + HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 94 EKPFKCTICSHKAARKDHMKRHLQLKHNADLSS 126
EKP+ C +C H+ +HL++ LS
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSG 42
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C S +S+L H HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C +Q S L H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
E+ + C C + +S L H K HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
E+ + C C +++S L H + HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 76 YRCSQQSALYNHLK---RH------TGEKPFKCTICSHKAARKDHMKRHLQLKH 120
YRC S +Y H+ RH K + C C + RKD+M H+++ H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
+K F C HC + L H + HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 96 PFKCTICSHKAARKDHMKRH 115
F C +C+ AR++H+KRH
Sbjct: 2 SFVCEVCTRAFARQEHLKRH 21
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 94 EKPFKCTICSHKAARKDHMKRHLQLKHNADLSS 126
EKPFKC IC + + RH + H A+ S
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRH-SMVHTAEKPS 41
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
EK + C C Q+S L H + HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 14 ESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAF 69
E S ++ C + + P+V KY L K D ++ ++R +KAF
Sbjct: 617 EVFSMDMFHSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDMLQNFLQREPNQKAF 672
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 14 ESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAF 69
E S ++ C + + P+V KY L K D ++ ++R +KAF
Sbjct: 617 EVFSMDMFHSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDMLQNFLQREPNQKAF 672
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 92 TGEKPFKCTI--CSHKAARKDHMKRH 115
TG KPF+CT C +R DH+ H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALH 28
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 95 KPFKCTICSHKAARKDHMKRHLQLKHNAD 123
KP+ C C +R DH+ H++ H ++
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSE 39
>pdb|1YUI|A Chain A, Solution Nmr Structure Of The Gaga FactorDNA COMPLEX,
Regularized Mean Structure
pdb|1YUJ|A Chain A, Solution Nmr Structure Of The Gaga FactorDNA COMPLEX, 50
Structures
Length = 54
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 90 RHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA 122
R E+P C IC + +++RHL+L+H A
Sbjct: 18 RSQSEQPATCPICYAVIRQSRNLRRHLELRHFA 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,686,896
Number of Sequences: 62578
Number of extensions: 173800
Number of successful extensions: 942
Number of sequences better than 100.0: 188
Number of HSP's better than 100.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 401
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)