RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4404
(151 letters)
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 73.8 bits (182), Expect = 2e-18
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEK 95
+ C Y C+ S H++ H+R HTGEK + C C++R ++ L H ++HTG K
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 96 PFKCTICSHKAARKDHMKRHL 116
PF+C +C+ +R DH+ H+
Sbjct: 75 PFQCGVCNRSFSRSDHLALHM 95
Score = 53.8 bits (130), Expect = 2e-10
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHT 92
Y C ++ C + SD + RH R+HTG K F C C S+ L H+KRH
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 51.5 bits (124), Expect = 1e-09
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 51 GNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAAR 108
G+S R H + P C ++ S L HL+ HTGEKP+KCT C + AR
Sbjct: 4 GSSGPDLEKRRIHYCDY----PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFAR 59
Query: 109 KDHMKRHL 116
D + RH
Sbjct: 60 SDELTRHY 67
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 73.3 bits (181), Expect = 3e-18
Identities = 35/77 (45%), Positives = 41/77 (53%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C + C S + RHIR HTG+K F C C S+ L H++ HTGEKPF
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99 CTICSHKAARKDHMKRH 115
C IC K AR D KRH
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 26.3 bits (59), Expect = 1.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 53 SDHMRRHIRRHTGEK 67
SD +RH + H +K
Sbjct: 75 SDERKRHTKIHLRQK 89
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 72.6 bits (179), Expect = 4e-18
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 55 HMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE--KPFKCTICSHKAARKDHM 112
R H+GEK + C C R +Q + H+ + E F C C ARK +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 113 KRHLQLKH 120
HL+ +H
Sbjct: 62 GVHLRKQH 69
Score = 54.1 bits (131), Expect = 6e-11
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 53 SDHMRRHIRRHTGE--KAFHCPHCEYRCSQQSALYNHLKR-HTGEKPF 97
S M+ HI + E FHCPHC+ +++S L HL++ H+ P
Sbjct: 28 SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 69.5 bits (171), Expect = 1e-16
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEK 95
+ C Y C S H++ H+R HTGEK +HC C ++ ++ L H ++HTG +
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Query: 96 PFKCTICSHKAARKDHMKRH 115
PF+C C +R DH+ H
Sbjct: 65 PFQCQKCDRAFSRSDHLALH 84
Score = 54.1 bits (131), Expect = 9e-11
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 62 RHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRH 115
+ T C ++ S L HL+ HTGEKP+ C C K AR D + RH
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Score = 49.1 bits (118), Expect = 6e-09
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRH 91
Y C + C + SD + RH R+HTG + F C C+ S+ L H+KRH
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 67.5 bits (166), Expect = 3e-16
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHL 116
+ C C Y CS ++AL H + H ++PFKC CS + ++ +H+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 60.2 bits (147), Expect = 3e-13
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 46 CSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
CSY + +R H R H ++ F C +C + Q S L H+K+ G+ +
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 68.7 bits (169), Expect = 5e-16
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
Y C ++ C SD ++RH RRHTG K F C C+ + S+ L H + HTGEKPF
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 99 CTI--CSHKAARKDHMKRH 115
C C K AR D + RH
Sbjct: 97 CRWPSCQKKFARSDELVRH 115
Score = 68.3 bits (168), Expect = 6e-16
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKP 96
++C Y C+ H++ H R+HTGEK + C CE R S+ L H +RHTG KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 97 FKCTICSHKAARKDHMKRH 115
F+C C K +R DH+K H
Sbjct: 67 FQCKTCQRKFSRSDHLKTH 85
Score = 45.2 bits (108), Expect = 4e-07
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 64 TGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRH 115
+ ++ F C P C R + S L H ++HTGEKP++C C + +R D +KRH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 63.6 bits (155), Expect = 1e-14
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHT---GEKPFKCTICSHKAARKDHMKRHLQLK 119
+G C C + C Q+++L H ++H F C C + + D + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 120 HNADLS 125
H A L
Sbjct: 62 HPALLL 67
Score = 44.3 bits (105), Expect = 4e-07
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHT---GEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
C + C + + H R+H F C C R + ++ H +
Sbjct: 8 LQC--EICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 96 PFKCTICSHKAA 107
S ++
Sbjct: 66 LLAPQESSGPSS 77
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 62.6 bits (153), Expect = 4e-14
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKP 96
YVC ++ C + ++ H HT + + CPH C+ R S S L H K H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 97 FKCTICSHKAARKDHMKRHLQLKH 120
K CS +H+ H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 62.1 bits (152), Expect = 1e-13
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC----SHKAAR 108
D ++ H+R HTG K + C C+Y + S+L HL+ H+ E+PFKC IC + +
Sbjct: 21 KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQL 80
Query: 109 KDHMKRH 115
H++ H
Sbjct: 81 TVHLRSH 87
Score = 54.7 bits (133), Expect = 5e-11
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
S + +H+R H+ E+ F C C Y S L HL+ HTG+
Sbjct: 49 SSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 51.7 bits (125), Expect = 1e-09
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
C C S++ L H++ HTG KP+KC C + AA + +H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 61.0 bits (149), Expect = 1e-13
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHL--KRHTGEKPFKCTICSHKAARKDHMKRHLQL 118
GE + C C + S H K + C C + RKD+M H+++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 119 KH 120
H
Sbjct: 63 IH 64
Score = 41.4 bits (98), Expect = 4e-06
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 53 SDHMRRHIR--RHTGEKAFHCPHCEYRCSQQSALYNHLKRHTG 93
+ RH K + CP C +++ + H+K
Sbjct: 23 ISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 60.4 bits (147), Expect = 2e-13
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKD 110
+++ ++ + + CP C+ R S+ L H++ HTG+KPF+C IC +R D
Sbjct: 6 MNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 111 HMKRHL 116
H+ H+
Sbjct: 64 HLTTHI 69
Score = 53.8 bits (130), Expect = 6e-11
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHT 92
Y C + C SD + RHIR HTG+K F C C S+ L H++ HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 33.8 bits (78), Expect = 0.002
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 85 YNHLKRH--TGEKPFKCTI--CSHKAARKDHMKRHLQ 117
N+L + +P+ C + C + +R D + RH++
Sbjct: 6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR 42
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 59.4 bits (145), Expect = 9e-13
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE--KPFKCTICSHKAARKD 110
H+ RH H+GEK + CP C R ++ + H++ H G KP+ C C +R D
Sbjct: 20 VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79
Query: 111 HMKRHLQLKH 120
H+ H++ H
Sbjct: 80 HLNGHIKQVH 89
Score = 42.1 bits (100), Expect = 4e-06
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 53 SDHMRRHIRRHTGE--KAFHCPHCEYRCSQQSALYNHLKR-HTGEK 95
D M H+R H G K + C C S+ L H+K+ H+G
Sbjct: 48 KDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 58.7 bits (143), Expect = 1e-12
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHM 112
SDH+ HIR HTGEK F C C + ++ H P ++ H+
Sbjct: 16 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHL 74
Query: 113 KRHLQ 117
+ +
Sbjct: 75 ENEVA 79
Score = 49.8 bits (120), Expect = 4e-09
Identities = 24/49 (48%), Positives = 27/49 (55%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
K F C C S+ L H++ HTGEKPF C IC K AR D KRH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR---HTGEK 95
SD +RH E S+ L N + R GE+
Sbjct: 44 SDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 58.2 bits (142), Expect = 2e-12
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHM 112
H H +K + C C+ + L +H HTGEKP++C IC + R ++
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 113 KRH 115
K H
Sbjct: 62 KTH 64
Score = 45.1 bits (108), Expect = 1e-07
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
++ H HTGEK + C C + ++ + L H + H+GEKP+
Sbjct: 30 KGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 60.3 bits (147), Expect = 2e-12
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 39 YVCLYQKCSYHT---GNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTG 93
+VC + CS + H+RRHTGEK C C S+ L HL+ HTG
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 94 EKPFKCTIC------SHKAARKDHMKR 114
EKP+ C S+ + R H R
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNR 121
Score = 58.4 bits (142), Expect = 8e-12
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKR-HTGEK 95
+ C ++ C ++++ H+R HTGEK + C H C S S H R H+ EK
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 96 PFKCTIC------SHKAARKDHMKRH 115
P+ C + + ++ + H+K
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 54.1 bits (131), Expect = 4e-10
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 41 CLYQKCSYHTGNSDHMRRHIRR---HTGEKAFHCPHCEYRC-----SQQSALYNHLKRHT 92
C + CS + + + HI H K F C Q L H++RHT
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 93 GEKPFKCTI--CSHKAARKDHMKRH 115
GEKP KCT C +R +++K H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTH 88
Score = 43.0 bits (102), Expect = 5e-06
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRR-HTGEKAFHC--PHCEYRCSQQSALYNHLKRHTG 93
Y+C ++ CS N+ +H R H+ EK + C P C R + S+L H+K G
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 12/62 (19%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKR---HTGEKPFKCTIC---------SHKAARKDHMK 113
E C Q L +H+ H K F C + HM+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 114 RH 115
RH
Sbjct: 61 RH 62
Score = 26.4 bits (59), Expect = 3.4
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 94 EKPFKCTICSHKAARKDHMKRHLQLKH 120
E + CS + ++ + H+ +H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEH 27
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 57.6 bits (140), Expect = 3e-12
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIR-RHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEK 95
C + C N ++ H + +H +K+F CP C + + L H+K H+ +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 96 PFKCTIC 102
+ C
Sbjct: 68 DYICEFS 74
Score = 46.4 bits (111), Expect = 6e-08
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 63 HTGEKAFHCPH--CEYRCSQQSALYNHLK-RHTGEKPFKCT--IC----SHKAARKDHMK 113
+G C C S + L +H K +H +K F C C + K K+HMK
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 114 RH 115
H
Sbjct: 62 LH 63
Score = 32.1 bits (74), Expect = 0.014
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 91 HTGEKPFKCTI--CSHKAARKDHMKRHLQLKH 120
+G C C + + ++ H + +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 56.4 bits (137), Expect = 1e-11
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 55 HMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE----KPFKCTICSHKAARKD 110
R HTGEK + C HC+ Q+ L H KR+ F C+ C R++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 111 HMKRH 115
M RH
Sbjct: 62 TMARH 66
Score = 51.4 bits (124), Expect = 8e-10
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 53 SDHMRRHIRRHTGE----KAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
+ H +R+ AF C C ++++ + H G +
Sbjct: 28 KQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 56.7 bits (138), Expect = 1e-11
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKA-ARKDH 111
S +K F C C ++ L H + HT E+P+ C IC HKA R+DH
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC-HKAFRRQDH 60
Query: 112 MKRH 115
++ H
Sbjct: 61 LRDH 64
Score = 54.4 bits (132), Expect = 9e-11
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
S ++ H R HT E+ + C C +Q L +H H+ EKPFKC C
Sbjct: 30 SYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Score = 51.3 bits (124), Expect = 1e-09
Identities = 14/48 (29%), Positives = 16/48 (33%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
DH+R H H+ EK F C C Q L H H
Sbjct: 58 QDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 57.7 bits (140), Expect = 1e-11
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRC----SQQSALYNHLKRHTGEKPFKCTI--C---- 102
+ HIR HTGEK F CP C ++ L H + HTGEKPFKC C
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPG--CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132
Query: 103 SHKAARKDHMKRH 115
++ + RK HM H
Sbjct: 133 ANSSDRKKHMHVH 145
Score = 55.8 bits (135), Expect = 7e-11
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 52 NSDHMRRHIRRHTGEKAFHCPHCEY-----RC----SQQSALYNHLKRHTGEKPFKCTI- 101
+ H+ H Y R + L NH++ HTGEKPF C
Sbjct: 37 TMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFP 96
Query: 102 -CSHKAARKDHMKRHL 116
C AR +++K H
Sbjct: 97 GCGKIFARSENLKIHK 112
Score = 52.7 bits (127), Expect = 1e-09
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKP 96
+ C + C S++++ H R HTGEK F C C+ R + S H+ HT +K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 97 FKCT 100
+
Sbjct: 151 GPSS 154
Score = 48.1 bits (115), Expect = 5e-08
Identities = 5/60 (8%), Positives = 11/60 (18%)
Query: 45 KCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSH 104
+ + C+ S L H+ P + +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Score = 31.9 bits (73), Expect = 0.034
Identities = 3/42 (7%), Positives = 10/42 (23%)
Query: 79 SQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
+ + C + + H+ ++H
Sbjct: 8 QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 56.3 bits (137), Expect = 2e-11
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
RH+ H G + + C C + + L H+K HTG KP++C IC
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 49.7 bits (120), Expect = 5e-09
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
H+ H++ HTG K + C C R + + H + K ++
Sbjct: 50 KHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKA 97
Score = 47.8 bits (115), Expect = 3e-08
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC----SHKAARKDHMKRH 115
+G+K + C C + +S H+ H G +P+ C +C K HMK H
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 55.1 bits (134), Expect = 2e-11
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 51 GNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
G+S R + + + C C S S L H + HTGEKP+KC C
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 46.3 bits (111), Expect = 5e-08
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
S + +H R HTGEK + C C Q+S L H + HTG P
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 57.1 bits (139), Expect = 4e-11
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC----SHKAAR 108
SDH+ H R HTGEK + CP C S + L H + HTGEKP+KC C S +A
Sbjct: 34 SDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANL 93
Query: 109 KDHMKRH 115
+ H + H
Sbjct: 94 RAHQRTH 100
Score = 56.3 bits (137), Expect = 9e-11
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHM 112
H+R H R HTGEK + CP C S++ L+ H + HTGEKP+KC C +R+D +
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177
Query: 113 KRH 115
H
Sbjct: 178 NVH 180
Score = 55.9 bits (136), Expect = 1e-10
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHM 112
++R H R HTGEK + CP C SQ + L H + HTGEKP+KC C +R+D++
Sbjct: 90 RANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNL 149
Query: 113 KRH 115
H
Sbjct: 150 HTH 152
Score = 53.6 bits (130), Expect = 8e-10
Identities = 22/64 (34%), Positives = 28/64 (43%)
Query: 52 NSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDH 111
S GEK + CP C S+ L H + HTGEKP+KC C + K
Sbjct: 5 GSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD 64
Query: 112 MKRH 115
+ RH
Sbjct: 65 LTRH 68
Score = 45.5 bits (109), Expect = 8e-07
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
D++ H R HTGEK + CP C S++ AL H + HTG+K
Sbjct: 146 EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 79 SQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
S+ GEKP+ C C +R DH+ H
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 56.0 bits (136), Expect = 4e-11
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRC----SQQSALYNHLKRHTGEKPFKCTI--CSHKA 106
S ++RH HTGEK F C C S L H++ HTG++P+ C C+ K
Sbjct: 47 SSKLKRHQLVHTGEKPFQCTFEG--CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Query: 107 ARKDHMKRH 115
A+ ++K H
Sbjct: 105 AQSTNLKSH 113
Score = 55.6 bits (135), Expect = 5e-11
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
C ++ C+ ++ MR+H+ H G + C C + S L H HTGEKPF+
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 99 CTIC------SHKAARKDHMKRH 115
CT S + H++ H
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIH 87
Score = 52.5 bits (127), Expect = 7e-10
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRC----SQQSALYNHLKRHTGE 94
+ C ++ C ++R H+R HTG++ + CP C +Q + L +H+ H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG--CNKKFAQSTNLKSHILTHAKA 120
Query: 95 KPFK 98
K +
Sbjct: 121 KNNQ 124
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 55.2 bits (134), Expect = 7e-11
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR---HTGEKPFKCTIC----SHK 105
+++ H R+HTGEK F CP C ++ L H R + E+ F C++C +
Sbjct: 20 KYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRR 79
Query: 106 AARKDHMKRH 115
+ HM H
Sbjct: 80 MELRLHMVSH 89
Score = 54.8 bits (133), Expect = 1e-10
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 53 SDHMRRHIRR---HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC----SHK 105
+++ H R + E+ F C C+ ++ L H+ HTGE P+KC+ C K
Sbjct: 48 KENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQK 107
Query: 106 AARKDHMKR 114
+ HM +
Sbjct: 108 KDLQSHMIK 116
Score = 52.5 bits (127), Expect = 6e-10
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+G CP C + + L H ++HTGEKPF+C C RK+++ H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR-HTGEK 95
+R H+ HTGE + C C + Q+ L +H+ + H+G
Sbjct: 79 RMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 53.1 bits (128), Expect = 9e-11
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 59 HIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK F C P C +R S+ L H + H+G KP +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 38.8 bits (91), Expect = 2e-05
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 86 NHLKRHTGEKPFKCT--ICSHKAARKDHMKRHL 116
+ TGEKPF CT C + +R D + RH
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34
Score = 36.9 bits (86), Expect = 1e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC 71
+ C + C + SD + RH R H+G K
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 53.2 bits (129), Expect = 1e-10
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
S + H+ H+ + + C +C R Q+S + H HTGEKP KC +C
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Score = 38.2 bits (90), Expect = 7e-05
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTG 93
M++H HTGEK C C SQ S L H ++HTG
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 36.2 bits (85), Expect = 4e-04
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 68 AFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+F C C + S L HL H+ +P+ C C + +K MK+H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-10
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK F C C+ + +S L H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 30.1 bits (69), Expect = 0.032
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKPF+C+ C K ++ H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 23.6 bits (52), Expect = 7.2
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
++ H R HTGEK
Sbjct: 25 KSNLIVHQRTHTGEKPSGP 43
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 52.4 bits (126), Expect = 2e-10
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAAR 108
S + ++ C H C + S L H + HTGEKPF C+ C + AR
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 109 KDHMKRHL 116
D + RH
Sbjct: 62 SDELSRHR 69
Score = 48.2 bits (115), Expect = 1e-08
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRH 91
++C + C S H++ H R HTGEK F C CE R ++ L H + H
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 52.1 bits (126), Expect = 4e-10
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
H+GEK + C C S+ S L H + HTGEKP+KC C ++ + H
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 46.7 bits (112), Expect = 4e-08
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
S + +H R HTGEK + C C SQ S L NH + HT
Sbjct: 27 SSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 30.9 bits (71), Expect = 0.028
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 84 LYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
H+GEKP+ C C +R + +H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 6e-10
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
GEK + C C S +S L H++ H+GEKP +
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.056
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ GEKP+ C+ C + K ++ H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 24.8 bits (55), Expect = 3.4
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
++ H+R H+GEK
Sbjct: 25 KSYLIIHMRTHSGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 8e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C +Q S L NH + HTG KP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 31.0 bits (71), Expect = 0.018
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+KC C + H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 24.8 bits (55), Expect = 3.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ H+ H R HTG K
Sbjct: 25 NSHLANHQRIHTGVKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-09
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GEK F C C R +Q S L++H + HTGEKP +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.008
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+GEKPF+C C + + H+ H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 25.6 bits (57), Expect = 1.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ H+ H R HTGEK
Sbjct: 25 NSHLHSHQRVHTGEKPSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 50.3 bits (121), Expect = 1e-09
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR-HTGEKPFKCTIC 102
+ K + C C S+ L H+K+ HT E+P KC +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 36.8 bits (86), Expect = 1e-04
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
+ + KP+ C C +R DH+ H++ H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 31.4 bits (72), Expect = 0.015
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 53 SDHMRRHIRR-HTGEKAFHCPHC 74
DH+ HI++ HT E+ C
Sbjct: 25 PDHLNGHIKQVHTSERPHKCQVW 47
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-09
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GEK F C C R +Q S L++H + HTGEKP +
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.010
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ +GEKPFKC C + + + H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 24.4 bits (54), Expect = 3.9
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ + H R HTGEK
Sbjct: 25 NSQLHSHQRVHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.8 bits (120), Expect = 1e-09
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
TGEK + C C+ + +S L H + HTGE
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 30.1 bits (69), Expect = 0.029
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP++C C K ++ H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 24.4 bits (54), Expect = 4.0
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 55 HMRRHIRRHTGEKAFHC 71
++ H R HTGE
Sbjct: 27 NLMVHQRTHTGESGPSS 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 49.8 bits (120), Expect = 1e-09
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TG K + C C S +S L H + HTG KP +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 29.8 bits (68), Expect = 0.051
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TG KP+ C+ C+ + K + H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 49.8 bits (120), Expect = 1e-09
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK F C C S S L H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.037
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKPF+C C + + H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 25.2 bits (56), Expect = 2.5
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
S + H R HTGEK
Sbjct: 25 SSQLATHQRIHTGEKPSGPSS 45
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 53.0 bits (128), Expect = 2e-09
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKP 96
Y+C + C + ++ H+ +HTGEK F C CE + L H HTGEK
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 97 FKCT--ICSHKAARKDHMKRH 115
F C C + K +MK+H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKH 93
Score = 48.7 bits (117), Expect = 5e-08
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKP 96
YVC ++ C + ++ H HT + + CPH C+ R S S L H K H G
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 164
Query: 97 FKCTICSHKAARKDHMKRHLQLKHN 121
K CS +H+ H
Sbjct: 165 KKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 48.4 bits (116), Expect = 8e-08
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAF----HCPHCEYRCSQQSALYNHLKRHTGE 94
+ C C +M++H R K H +C + + L H HT +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 95 KPFKCT--ICSHKAARKDHMKRH 115
P++C C + + +KRH
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRH 155
Score = 46.4 bits (111), Expect = 4e-07
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 59 HIRRHTGEKAFHCPHCEYRC----SQQSALYNHLKRHTGEKPFKCT--ICSHKAARKDHM 112
K + C + C ++ L HL +HTGEKPF C C H+
Sbjct: 3 EKALPVVYKRYICSFAD--CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 113 KRH 115
RH
Sbjct: 61 TRH 63
Score = 28.3 bits (64), Expect = 0.70
Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 2/32 (6%)
Query: 86 NHLKRHTGEKPFKCTI--CSHKAARKDHMKRH 115
K + C+ C + ++ H
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAH 33
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 2e-09
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GEK + C C +Q S L NH + HTGEKP +
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.016
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ +GEKP+KC C + H+ H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 24.4 bits (54), Expect = 3.9
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ H+ H R HTGEK
Sbjct: 25 NSHLTNHWRIHTGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 2e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TG++ + C C +S+L H + HTGEKP +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.083
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TG++P++C C K + H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 23.7 bits (52), Expect = 7.3
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ H R HTGEK
Sbjct: 25 KSSLICHRRSHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 2e-09
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C +Q++ L H K HTGEKP +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.029
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP++C +CS +K H+ +H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 25.6 bits (57), Expect = 1.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
H+ +H + HTGEK
Sbjct: 25 KAHLAQHQKTHTGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 2e-09
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C +++S L+ H + HTGE+ +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 31.7 bits (73), Expect = 0.011
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKP+KC+ C RK + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 23.6 bits (52), Expect = 7.2
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 55 HMRRHIRRHTGEKAFHC 71
+ H + HTGE+
Sbjct: 27 GLHIHQQSHTGERHSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 49.1 bits (118), Expect = 2e-09
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TG+K F C HC + L H + HTGEK +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 32.1 bits (74), Expect = 0.006
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TG+KPF+CT C K ++ H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 24.0 bits (53), Expect = 5.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
++ H R HTGEK+
Sbjct: 25 KGNLVTHQRIHTGEKSGPS 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 2e-09
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GEK F C C Q L +HL+ HTGEKP +
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.020
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+GEKPFKC C + H+ H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 25.5 bits (57), Expect = 1.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ H+ H+R HTGEK
Sbjct: 25 NIHLASHLRIHTGEKPSGP 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 49.7 bits (118), Expect = 2e-09
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
KY+C ++C +++HIR HT + +HC +C + + L H+K K
Sbjct: 1 KYIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 43.6 bits (102), Expect = 5e-07
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 69 FHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQ 117
+ C C R + S L H++ HT +P+ CT C+ K ++ +H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 2e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGE + C C S++ L +H + H GEKP +
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.031
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGE P++C C +RK + H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 25.5 bits (57), Expect = 1.5
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H R H GEK
Sbjct: 25 KYQLISHQRTHAGEKPSGPSS 45
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 3e-09
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C +Q S L H HTGEKP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.011
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKP+KC C + H+ RH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 25.5 bits (57), Expect = 1.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H+ RH HTGEK
Sbjct: 25 NSHLVRHRGIHTGEKPSGPSS 45
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 3e-09
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C +S+L H H+GEKP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.13
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+KC C + + H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 24.0 bits (53), Expect = 6.5
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 55 HMRRHIRRHTGEKAFHC 71
+ H H+GEK
Sbjct: 27 SLAIHQATHSGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 3e-09
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK C C S S L H + HTGE P +
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 28.3 bits (64), Expect = 0.15
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP +C C + + H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 24.8 bits (55), Expect = 2.7
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ + H R HTGE
Sbjct: 25 NSQLIVHQRIHTGENPSGPSS 45
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 49.1 bits (118), Expect = 3e-09
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK ++C C S L H + H+GEKP +
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.19
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+ C C + +H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 24.8 bits (55), Expect = 3.4
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ + +H R H+GEK
Sbjct: 25 ASCLLKHQRVHSGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 49.1 bits (118), Expect = 3e-09
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK F C C S++SAL H K HTGEKP +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.012
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKPFKC C +R+ + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 25.2 bits (56), Expect = 1.9
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H + HTGEK
Sbjct: 25 RSALNVHHKLHTGEKPSGPSS 45
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 3e-09
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
GEK + C C SQ S L H + HTGEKP +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.013
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
GEK +KC +C + ++ H++ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 25.2 bits (56), Expect = 2.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
S H++ H R HTGEK
Sbjct: 25 SSHLQTHQRVHTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 3e-09
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
TGE+ + C C + +S L H K HTGEKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.045
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGE+P+ CT+C + ++ +H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 23.6 bits (52), Expect = 8.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
++ +H + HTGEK
Sbjct: 25 RSNLIKHQKIHTGEKPSGPSS 45
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 3e-09
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK F C C +Q+ L H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.010
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKPFKC C ++ H+ +H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 24.8 bits (55), Expect = 2.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
H+ +H R HTGEK
Sbjct: 25 RVHLTQHQRVHTGEKPSGPSS 45
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 3e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C + + L H K HTGE+P +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 30.2 bits (69), Expect = 0.036
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+KC C K ++ H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 23.6 bits (52), Expect = 8.2
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
++ H + HTGE+
Sbjct: 25 KFNLDMHQKVHTGERPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C SQ + L H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.026
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP++C C ++ H+ +H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 25.2 bits (56), Expect = 2.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H+ +H R HTGEK
Sbjct: 25 TTHLIQHQRVHTGEKPSGPSS 45
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C SQ S L H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.032
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKP+KC C ++ + RH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 24.8 bits (55), Expect = 2.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ + RH R HTGEK
Sbjct: 25 TSKLARHQRIHTGEKPSGPSS 45
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C S+ S L H K HTGEKP +
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.025
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEK +KC C +R + +H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 24.4 bits (54), Expect = 3.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ + +H + HTGEK
Sbjct: 25 NSQLSQHQKIHTGEKPSGPSS 45
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C + +S L H K HT +KP +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 30.6 bits (70), Expect = 0.022
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKP+ C C + ++ +H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 24.4 bits (54), Expect = 4.2
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
++ +H + HT +K
Sbjct: 25 RSNLIKHQKIHTKQKPSGPSS 45
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 4e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGE F C C + ++ L H K HTGE+P +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 31.7 bits (73), Expect = 0.008
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGE PF C+ C K ++ H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK ++C C S L H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.062
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+ C C ++ H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 24.0 bits (53), Expect = 5.0
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
++ H R HTGEK
Sbjct: 25 DSQLQEHQRIHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
G+K F C C+ +Q S+L H + HTGEKP +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.067
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
G+K FKC C + + H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 23.6 bits (52), Expect = 7.8
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
S + H R HTGEK
Sbjct: 25 SSSLTVHQRIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GEK + C +C + L H + HTGEKP +
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.072
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+GEKP+ C C + RH
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 24.0 bits (53), Expect = 6.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
S + RH R HTGEK
Sbjct: 25 SAELVRHQRIHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 6e-09
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C +++S L+ H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.091
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP++C+IC +K + H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 24.4 bits (54), Expect = 3.9
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H + HTGEK
Sbjct: 25 KSQLHVHQQIHTGEKPSGPSS 45
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 6e-09
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GEK + C C SQ+S L H + HTGEKP +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.034
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+GEKP+ C C ++K + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 24.4 bits (54), Expect = 4.3
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 55 HMRRHIRRHTGEKAFHC 71
+ H R HTGEK
Sbjct: 27 ILSAHQRTHTGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 48.3 bits (116), Expect = 6e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GEK F C C S Y+H + H+GEKP +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.011
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ +GEKPFKC C H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 24.4 bits (54), Expect = 4.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ H R H+GEK
Sbjct: 25 NSQCYSHQRSHSGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-09
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGE+ C C Q + L H + HTGEKP +
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.010
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGE+P KC C + H+ +H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 25.2 bits (56), Expect = 2.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
S H+ +H R HTGEK
Sbjct: 25 SAHLIQHQRIHTGEKPSGPSS 45
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C S + +L H + H+G+KP +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 28.6 bits (65), Expect = 0.11
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 87 HLKRHTGEKPFKCTIC----SHKAARKDHMKRH 115
TGEKP++C++C SH+ + H + H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 24.8 bits (55), Expect = 3.5
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H R H+G+K
Sbjct: 25 RQSLSVHQRIHSGKKPSGPSS 45
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK ++C C S+ L H + H+GEKP +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.014
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEK + C C +R + +H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 24.8 bits (55), Expect = 3.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ + +H R H+GEK
Sbjct: 25 APCLLKHERLHSGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 47.9 bits (115), Expect = 7e-09
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
G + C CE S + L H + HT EKP +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 30.2 bits (69), Expect = 0.028
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
G P+KC+ C + K + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 24.0 bits (53), Expect = 4.8
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 55 HMRRHIRRHTGEKAFHC 71
+ H R HT EK
Sbjct: 27 RLLVHQRMHTREKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-09
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C +Q++ L H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.018
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKP++C C A+K ++ +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 24.0 bits (53), Expect = 5.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
++ +H R HTGEK
Sbjct: 25 KANLTQHQRIHTGEKPSGPSS 45
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-09
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C + S L H HTGEKP +
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.012
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+KC C R H+ RH
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 25.1 bits (56), Expect = 2.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ H+ RH HTGEK
Sbjct: 25 NSHLARHQLIHTGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-09
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C S +S+L H HTG+KP +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 28.7 bits (65), Expect = 0.11
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP++C C + + + H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 24.4 bits (54), Expect = 3.6
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 55 HMRRHIRRHTGEKAFHCPH 73
+ H HTG+K
Sbjct: 27 SLTTHQAIHTGKKPSGPSS 45
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 9e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
TGEK + C C + +S L+ H K HTGEKP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.052
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP++C C + ++ H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 23.6 bits (52), Expect = 7.2
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 55 HMRRHIRRHTGEKAFHCPH 73
++ H + HTGEK
Sbjct: 27 NLFTHQKIHTGEKPSGPSS 45
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 9e-09
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK F C C +S L H HT EKP +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.001
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKPFKC IC + + RH
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 25.1 bits (56), Expect = 2.5
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ RH HT EK
Sbjct: 25 RSRLNRHSMVHTAEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 9e-09
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C S L H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.018
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKP+KC C ++ RH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 24.0 bits (53), Expect = 4.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 55 HMRRHIRRHTGEKAFHC 71
++ RH R HTGEK
Sbjct: 27 YLSRHQRIHTGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
GEK + C C+ SQ S+L H H GEKP +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.025
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
GEK +KC C ++ ++ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 24.4 bits (54), Expect = 4.2
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ +R H H GEK
Sbjct: 25 ASSLRLHQNVHVGEKPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GE+ + C C + S L HLKRH EK +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 32.1 bits (74), Expect = 0.006
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+GE+P+ C C R H+ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH 31
Score = 28.3 bits (64), Expect = 0.19
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 51 GNSDHMRRHIRRHTGEKAFHC 71
G H+ H++RH EK+
Sbjct: 23 GRHSHLIEHLKRHFREKSSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.5 bits (114), Expect = 1e-08
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
TG K + C C +S L H + HTGE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 29.8 bits (68), Expect = 0.043
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TG KP+ C C K ++ H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 25.9 bits (58), Expect = 1.1
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 55 HMRRHIRRHTGEKAFHC 71
++ H R HTGE
Sbjct: 27 YLIIHTRTHTGESGPSS 43
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 47.9 bits (115), Expect = 1e-08
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
++F C C ++Q L H + HT EKP+ C +C+ R+D + RH Q H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 47.1 bits (113), Expect = 2e-08
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR-HTGEK 95
+H++RH R HT EK + C C +++ L H ++ H+G
Sbjct: 15 QEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C +Q S L H HTGEKP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.023
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+KC C + H+ RH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 25.5 bits (57), Expect = 1.4
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H+ RH HTGEK
Sbjct: 25 NSHLARHRGIHTGEKPSGPSS 45
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GEK + C C + + L H + HTG +P +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 31.3 bits (72), Expect = 0.012
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+GEKP+KC+ C R H+ H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 24.8 bits (55), Expect = 3.1
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
H+ H R HTG +
Sbjct: 25 HTHLNEHRRIHTGYRPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 47.1 bits (113), Expect = 1e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GEK F C CE S +S L H + H EKP +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 30.2 bits (69), Expect = 0.028
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 91 HTGEKPFKCTICSHKAARKDHMKRH 115
+GEKPF C+ C + K ++ H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 23.6 bits (52), Expect = 7.0
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 55 HMRRHIRRHTGEKAFHC 71
++ H + H EK
Sbjct: 25 YLLVHQQTHAEEKPSGP 41
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C S L H H+GE+P +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 30.9 bits (71), Expect = 0.019
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+KC +C H+ +H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 24.8 bits (55), Expect = 3.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
S H+ +H H+GE+
Sbjct: 25 SSHLVQHHSVHSGERPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK F C C S L H + HTGEKP +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.043
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKPF C C + + +H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 24.4 bits (54), Expect = 4.4
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ +H R HTGEK
Sbjct: 25 HIGLNQHRRIHTGEKPSGPSS 45
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C + +S L H K HTGE+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 31.7 bits (73), Expect = 0.010
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKP+KC+ C K ++ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 24.8 bits (55), Expect = 3.5
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+R H + HTGE+
Sbjct: 25 KSRLRIHQKCHTGERHSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGE+ + C C +++S L H + HTGEKP +
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.023
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGE+ ++C+ C ARK + H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 24.0 bits (53), Expect = 5.7
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H R HTGEK
Sbjct: 25 KSTLIMHQRIHTGEKPSGPSS 45
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 47.1 bits (113), Expect = 1e-08
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
GEK + C C R L +HL+ HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 38.2 bits (90), Expect = 4e-05
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 87 HLKRHTGEKPFKCTIC----SHKAARKDHMKRH 115
GEKP+ C IC H K H++ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 26.3 bits (59), Expect = 0.80
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 53 SDHMRRHIRRHTGEK 67
++ H+R HTG
Sbjct: 24 LQTLKSHLRIHTGSG 38
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-08
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
TG K + C C S S+L H HTGEKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.10
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TG KP+ C C + + H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 47.2 bits (113), Expect = 2e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C + LY H HTGEKP +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.030
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKP+KC C + + H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 24.0 bits (53), Expect = 6.3
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ H HTGEK
Sbjct: 25 RRDLYTHHMVHTGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C +Q S L H + HTG KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 30.6 bits (70), Expect = 0.028
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+KC C + H+ RH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 25.9 bits (58), Expect = 1.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H+ RH R HTG K
Sbjct: 25 NSHLARHRRVHTGGKPSGPSS 45
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 2e-08
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
TGEK F C C S +L+ HL+ H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 30.6 bits (70), Expect = 0.023
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 87 HLKRHTGEKPFKCTIC----SHKAARKDHMKRH 115
TGEKPF+C C S + H++ H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 26.0 bits (58), Expect = 1.1
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
S + +H+R H
Sbjct: 25 SCSLFKHLRSHERTDPSGPSS 45
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TG+K + C C +Q S L H HTGEKP +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.029
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TG+KP+KC C + H+ RH
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 25.9 bits (58), Expect = 1.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H+ RH HTGEK
Sbjct: 25 NSHLARHRGIHTGEKPSGPSS 45
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+ EK + C C +++ L H + H GEK +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 31.3 bits (72), Expect = 0.012
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ + EKP+KC C R+ ++ H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TG K F C C +++S L H K HTGEKP +
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.007
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TG K F+CT C RK + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 24.0 bits (53), Expect = 6.5
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 55 HMRRHIRRHTGEKAFHCPH 73
+ H + HTGEK
Sbjct: 27 TLSMHQKIHTGEKPSGPSS 45
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 2e-08
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TG K + C C SQ S L H + HTGEKP +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.078
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TG KP++C C ++ + RH
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 25.2 bits (56), Expect = 2.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ + RH R HTGEK
Sbjct: 25 TSKLARHQRVHTGEKPSGPSS 45
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGE+ + C C Q+S L H + H GEKP +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.058
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGE+ ++C+ C +K + H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 24.4 bits (54), Expect = 4.7
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H R H GEK
Sbjct: 25 KSTLSMHQRIHRGEKPSGPSS 45
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C S L H HTGEKP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.078
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+KC C ++ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GEK + C C ++ L H + HTGEK +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 32.1 bits (74), Expect = 0.007
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ +GEKP+KC C R+ + H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 24.4 bits (54), Expect = 4.4
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
+ H R HTGEK
Sbjct: 25 RLDLDFHQRVHTGEKLSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C Q+S L H + HTGEKP +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.006
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+ C C +K H+ RH
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 25.2 bits (56), Expect = 2.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
H+ RH R HTGEK
Sbjct: 25 KSHLNRHRRIHTGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 3e-08
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C S ++L H + H+GEKP +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.079
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP++C +C + + +H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 24.0 bits (53), Expect = 4.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ +H R H+GEK
Sbjct: 25 HASLTQHQRVHSGEKPSGPSS 45
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C S+L H + HTGEKP +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.11
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP+KC +C + H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK C C +S L H + H +K +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 31.0 bits (71), Expect = 0.019
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP KCT C K + H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 23.7 bits (52), Expect = 6.8
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 55 HMRRHIRRHTGEKAFHC 71
+ H R H +K
Sbjct: 27 QLIMHQRTHVDDKHSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C S+ H + HTG++P +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 30.6 bits (70), Expect = 0.026
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKP+KC C +H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 24.1 bits (53), Expect = 5.3
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ +H R HTG++
Sbjct: 25 NSSCTQHQRLHTGQRPSGPSS 45
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GE+ F C C ++S L HL+ H+ EK +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 32.1 bits (74), Expect = 0.006
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+GE+PFKC C R+ H+ H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 25.6 bits (57), Expect = 1.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 55 HMRRHIRRHTGEKAFHC 71
H+ H+R H+ EK+
Sbjct: 27 HLAGHLRLHSREKSSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 5e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
TGEK + C C ++S L+ H + HTGE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 29.4 bits (67), Expect = 0.056
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGEKP++C+ C +K + H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 24.0 bits (53), Expect = 5.6
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
+ H R HTGE
Sbjct: 25 KSQLHVHQRIHTGENPSGPSS 45
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 45.6 bits (109), Expect = 5e-08
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
+GEK + C C +S L H + H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 29.0 bits (66), Expect = 0.089
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ +GEKP++C C K + H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 6e-08
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
TGEK + C C + L HL+ HT E +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 31.7 bits (73), Expect = 0.010
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TGEKP+ C +C H+ +H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 25.9 bits (58), Expect = 1.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 53 SDHMRRHIRRHTGEKAFHCPH 73
S H+ +H+R HT E
Sbjct: 25 SAHLNQHLRVHTQETLSGPSS 45
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 6e-08
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
+G+K + C C Q L H + HTGE+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 30.6 bits (70), Expect = 0.022
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+G+KP++C C + H+ +H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 24.8 bits (55), Expect = 2.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 55 HMRRHIRRHTGEKAFHC 71
H+ +H R HTGE++
Sbjct: 27 HLNQHKRVHTGERSSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 45.3 bits (108), Expect = 7e-08
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
GEK + C C SQ+ +L H++ HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 29.8 bits (68), Expect = 0.039
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
GEKP++C C ++K + H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 44.9 bits (107), Expect = 1e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR-HTGEKPFKCT 100
TG+K + C C Q ++L H + HTGEKP +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 31.4 bits (72), Expect = 0.012
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
+ TG+KP++C C + + RH + H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 1e-07
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
GEK + C C S L H HT EKP +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 30.2 bits (69), Expect = 0.034
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
GEKP++C+ C + + +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 44.4 bits (106), Expect = 1e-07
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
GEK + C C R Q + L H+ HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 36.0 bits (84), Expect = 2e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
GEKP+KC C + + H++ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 26.3 bits (59), Expect = 0.76
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 53 SDHMRRHIRRHTGEK 67
H+R H+ HTG
Sbjct: 24 VAHLRAHVLIHTGSG 38
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.8 bits (107), Expect = 1e-07
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
GE+ C C Q S H + HTGEKP +
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.011
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ GE+ +C+ C + + +H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 43.7 bits (104), Expect = 3e-07
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
+GE + C C +++ L +H + H GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.8 bits (68), Expect = 0.040
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 89 KRHTGEKPFKCTICSHKAARKDHMKRH 115
+GE P++C+ C RKD + H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
Score = 24.8 bits (55), Expect = 2.6
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
D + H R H GE
Sbjct: 23 KDQLISHQRTHAGESGPSS 41
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.3 bits (103), Expect = 4e-07
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
TGE + C C S++ L +H K H+G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 30.9 bits (71), Expect = 0.018
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
TGE P++C C +RKD + H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 23.2 bits (51), Expect = 9.2
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 53 SDHMRRHIRRHTGEKAFHC 71
D + H + H+G+
Sbjct: 25 KDQLVSHQKTHSGQSGPSS 43
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 44.2 bits (104), Expect = 6e-07
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRR-HTGEKAFH--------CPHCEYRCSQQSALYNHL 88
+ + C + H+ H G + CP + L NH+
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 89 KRHTGEKPFKCT 100
+ HTGEK +
Sbjct: 83 RVHTGEKSGPSS 94
Score = 34.2 bits (78), Expect = 0.003
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 9/64 (14%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKR-HTGEKPFKCTICSHKA--------ARKDHMK 113
+ + C+ S L H+ H G +C + K +
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 114 RHLQ 117
H++
Sbjct: 80 NHIR 83
Score = 24.5 bits (53), Expect = 7.8
Identities = 3/30 (10%), Positives = 9/30 (30%)
Query: 91 HTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
+ C + + H+ ++H
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 42.9 bits (102), Expect = 6e-07
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+ K+ C C + +S L H + HTGEKP +
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.006
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ + K +C C K H+ +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 23.3 bits (51), Expect = 9.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 55 HMRRHIRRHTGEKAFHC 71
H+ +H R HTGEK
Sbjct: 27 HLNQHQRIHTGEKPSGP 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 41.2 bits (97), Expect = 2e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRHL 116
+ TG KPF+C C +R DH+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 37.7 bits (88), Expect = 4e-05
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRH 91
R TG K F CP C+ S+ L H KRH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.9 bits (94), Expect = 8e-06
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
+GEK+ C C SAL H + H GEK +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 28.3 bits (64), Expect = 0.14
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 87 HLKRHTGEKPFKCTIC----SHKAARKDHMKRH 115
+GEK C C + +A + H + H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 40.0 bits (94), Expect = 8e-06
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
GE + C C +Q+ +L H + + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 27.2 bits (61), Expect = 0.36
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 91 HTGEKPFKCTIC----SHKAARKDHMKRH 115
GE P+ C C + + + H +
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 39.1 bits (92), Expect = 1e-05
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
+G++ + C C Q+ +L H + HTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 28.3 bits (64), Expect = 0.16
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 91 HTGEKPFKCTICSHKAARKDHMKRH 115
+G++ ++C C +K + H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLH 29
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.8 bits (91), Expect = 2e-05
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
+GEK + C C+ S + L H K HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.4 bits (69), Expect = 0.028
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 91 HTGEKPFKCTICSHKAARKDHMKRH 115
+GEKP+ C C + + + +H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH 29
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 40.1 bits (93), Expect = 2e-05
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHL-KRHTG---EKPFKCTICSHKAAR 108
H + + E + C +C ++ + H+ H + C C+ R
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 109 KDHMKRHLQLKHNADLSSMIKLPKDN 134
D + H H + + + + K N
Sbjct: 63 YDALSEHNLKYHPGEENFKLTMVKRN 88
Score = 32.8 bits (74), Expect = 0.011
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 23 HCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIR-RHTG---EKAFHCPHCEYRC 78
H N V Y C Y C++ T + + H+ H ++ C C +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKY--CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 79 SQQSALYNH-LKRHTGEKPFKCTI 101
+ AL H LK H GE+ FK T+
Sbjct: 61 KRYDALSEHNLKYHPGEENFKLTM 84
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 38.3 bits (89), Expect = 4e-05
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
GE F C C+ +Q++ L H + H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 32.1 bits (73), Expect = 0.006
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 86 NHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ GE PFKC+ C +++++ +H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 39.9 bits (92), Expect = 4e-05
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 49 HTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAAR 108
+ + F CP C S +L H++ E C +C +
Sbjct: 55 QLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTS 112
Query: 109 KDHMKRHLQLKHN 121
D H+ KHN
Sbjct: 113 TDSALDHVCKKHN 125
Score = 31.4 bits (70), Expect = 0.044
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC----PHCEYRCSQQSALYNHLKRHTG 93
KY+ ++ H + R H ++ + +S+ L
Sbjct: 12 KYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKA 71
Query: 94 EKPFKCTICSHKAARKDHMKRHLQLKHNA 122
F C +C + +K+H++ +
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQHIRYTEHT 100
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.2 bits (87), Expect = 7e-05
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
T K+++C C ++ L H K HT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 32.2 bits (74), Expect = 0.006
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
T K + C C R H+ RH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 36.5 bits (84), Expect = 2e-04
Identities = 11/43 (25%), Positives = 13/43 (30%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICS 103
K C C L H H+GEKP+ S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 30.7 bits (69), Expect = 0.025
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC 74
+ C + C + H+ RH H+GEK +
Sbjct: 12 QVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.4 bits (58), Expect = 0.80
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 89 KRHTGEKPFKCTICSHKAARKDHMKRH 115
K C IC H+ RH
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRH 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 35.8 bits (82), Expect = 5e-04
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 51 GNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKD 110
G+S + + H G+++ C C ++S + K C C + ++
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEA 53
Query: 111 HMKRH 115
+ +
Sbjct: 54 ALNKD 58
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 36.7 bits (84), Expect = 6e-04
Identities = 10/73 (13%), Positives = 16/73 (21%), Gaps = 5/73 (6%)
Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLK-----RHTGEKPFKCTICSHKAA 107
+ + TG F C C L H+ R +
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP 63
Query: 108 RKDHMKRHLQLKH 120
RK + +
Sbjct: 64 RKRSLLEMEGKED 76
Score = 33.2 bits (75), Expect = 0.009
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 79 SQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQ 117
S S+ + TG F+C CS + H+
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN 40
Score = 33.2 bits (75), Expect = 0.009
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 53 SDHMRRHI-RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDH 111
+ HM R + + + ++ +L + +K KC C H
Sbjct: 36 TVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQD 95
Query: 112 MKRHLQ 117
+ H+
Sbjct: 96 LSVHMI 101
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.4 bits (77), Expect = 0.002
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
++C + C SD ++RH R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 24.1 bits (53), Expect = 4.6
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 95 KPFKCTI--CSHKAARKDHMKRHL 116
+PF CT C + R D ++RH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK 24
Score = 23.3 bits (51), Expect = 8.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 67 KAFHC--PHCEYRCSQQSALYNHLKRHTGEK 95
+ F C +C R ++ L H + HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 33.4 bits (75), Expect = 0.002
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 91 HTGEKPFKCTICSHKAARKDHMKRHLQLKHNA 122
+GEKP+ C +C + RKD M H++ +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 26.0 bits (56), Expect = 1.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTG 93
+GEK + CP C R ++ + H++ H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 32.1 bits (73), Expect = 0.005
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 95 KPFKCTICSHKAARKDHMKRHLQLKHNADL 124
K + C +C+ R+D + RH Q H+ +L
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL 30
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.1 bits (72), Expect = 0.005
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
+ K + CP C Y + ++ L HL++HTGEK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.6 bits (55), Expect = 1.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 92 TGEKPFKCTICSHKAARKDHMKRHLQLKHNAD 123
+ KP+KC CS+ +A K ++ HL+ KH +
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLR-KHTGE 35
Score = 24.4 bits (52), Expect = 3.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 45 KCSYHTGNSDHMRRHIRRHTGEK 67
+CSY + ++ H+R+HTGEK
Sbjct: 14 QCSYASAIKANLNVHLRKHTGEK 36
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 31.6 bits (72), Expect = 0.009
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
+++C Q C G + H+R H+R HTGE+
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 23.9 bits (52), Expect = 5.0
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 64 TGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEK 95
+K C C + S L HL+ HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 32.2 bits (72), Expect = 0.021
Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Query: 46 CSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHK 105
C+ + H R A CP+C R H + K C C
Sbjct: 22 CNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRT 78
Query: 106 AARKDHMKRHLQLKHNAD 123
+ RH HN +
Sbjct: 79 FKSSFSIWRHQVEVHNQN 96
Score = 24.9 bits (53), Expect = 7.6
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 65 GEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
++ + C C + S +H + C CS + + + H
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH 61
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 29.6 bits (67), Expect = 0.040
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 95 KPFKCTICSHKAARKDHMKRHL 116
+ F C +C+ AR++H+KRH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Score = 27.3 bits (61), Expect = 0.33
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
+VC C+ +H++RH R HT EK
Sbjct: 2 SFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
Score = 25.0 bits (55), Expect = 1.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
++F C C ++Q L H + HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.8 bits (67), Expect = 0.053
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
+ CL+ C+ ++R HI+ H ++
Sbjct: 13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 30.5 bits (68), Expect = 0.17
Identities = 15/84 (17%), Positives = 19/84 (22%), Gaps = 13/84 (15%)
Query: 25 KTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSAL 84
+ + + S H I +K CP C Y
Sbjct: 128 RKAQEEGNSKAVHVFTRAKLAESVHAERYLAAYNDIDAPDDDKFHLCPICGYI------- 180
Query: 85 YNHLKRHTGEKPFKCTICSHKAAR 108
H GE KC IC
Sbjct: 181 ------HKGEDFEKCPICFRPKDT 198
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.24
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 14/49 (28%)
Query: 31 SRPD--------VSFKYVCLYQKCSY----HTGNSDH--MRRHIRRHTG 65
+ PD +S + + Q Y +R +++ TG
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 29.2 bits (65), Expect = 0.27
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 93 GEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDNYLDVI 139
G + C C A + H +L+H ++ SM+ + I
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYI 58
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.2 bits (59), Expect = 0.35
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
K F C CEY +S L H+ RH+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 24.1 bits (51), Expect = 4.8
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 95 KPFKCTICSHKAARKDHMKRHLQLKHNAD 123
KPFKC++C + K ++K H+ +H+ +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHM-NRHSTE 35
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.8 bits (66), Expect = 0.39
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 95 KPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDNYLDVISFL 142
+ C +C+ + + + HL+ H D S+++ P N + SFL
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNA-IRSFL 161
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.0 bits (59), Expect = 0.47
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 HTGEKPFKCTICSHKAARKDHMKRHLQL 118
+G++PF C IC K + RHL++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
Score = 23.6 bits (50), Expect = 8.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHT 92
+G++ F C C + ++ HLK HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 28.4 bits (62), Expect = 0.93
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 10 EVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAF 69
+ E L + K+ +L + + V ++ S + R K
Sbjct: 101 QEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVK 160
Query: 70 HCPHCEYRCSQQS-----ALYNHLKRHTGEKPFK 98
+ + AL++ E FK
Sbjct: 161 SVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFK 194
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 27.2 bits (59), Expect = 0.96
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 61 RRHTGEKAFHCPHC-EYRCSQQSALYNHLKR-HTGEKPFKCTICSHKAARKDHMKRHLQL 118
R CP C L H++ + KC C + K + H
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Query: 119 KHNADLSS 126
+H+A S
Sbjct: 77 EHSAKPSD 84
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.2 bits (62), Expect = 1.0
Identities = 10/63 (15%), Positives = 18/63 (28%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQ 117
R IR + ++ R S H GEK + + ++ +
Sbjct: 170 RDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Query: 118 LKH 120
L
Sbjct: 230 LSV 232
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 28.3 bits (62), Expect = 1.1
Identities = 6/67 (8%), Positives = 15/67 (22%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
S+ A + ++C +CS + H+
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Query: 121 NADLSSM 127
++
Sbjct: 205 LHGNMTL 211
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 25.5 bits (55), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
K + C HC+ + + AL H++ HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 23.2 bits (49), Expect = 8.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
YVC++ C + ++RH+R HTGEK
Sbjct: 4 YVCIH--CQRQFADPGALQRHVRIHTGEK 30
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 25.6 bits (55), Expect = 2.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 90 RHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
R E+P C IC + +++RHL+L+H
Sbjct: 18 RSQSEQPATCPICYAVIRQSRNLRRHLELRH 48
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 3.1
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 24/93 (25%)
Query: 52 NSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDH 111
N H + + E P +Y LK + H++
Sbjct: 409 NKLHKYSLVEKQPKESTISIPS----------IYLELKVKLENEYAL-----HRS----- 448
Query: 112 MKRHLQLKHNADLSSMIKLPKDNYLDVISFLYL 144
+ H + D +I D Y + ++
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYF----YSHI 477
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 24.3 bits (52), Expect = 3.8
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 97 FKCTICSHKAARKDHMKRHLQ 117
F C C + R D + +H++
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 25.6 bits (55), Expect = 4.3
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNAD 123
+ CP C+ + + ++ F C C + MK H+ HN+
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Score = 25.2 bits (54), Expect = 5.8
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 56 MRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
+++H+ ++ F C HC + + + H+ + P
Sbjct: 51 LKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 25.6 bits (57), Expect = 6.6
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 4 VICQYCEVRLESNSKELLE---HCKTCKNLSRPDV 35
V C C E S + C C +L RP V
Sbjct: 122 VRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGV 156
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.7 bits (50), Expect = 7.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
K F C +C + +L HL+ HT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural
genomics consortium, SGC, activator, alternative
splicing, chromatin regulator, nucleus, polymorphism,
protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A
Length = 355
Score = 25.8 bits (56), Expect = 7.4
Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 15/82 (18%)
Query: 24 CKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHT------GEKAFHCPHCEY- 76
C+ C S F + L G +R T E A C C
Sbjct: 176 CQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQK 235
Query: 77 -RCSQQSALYN-------HLKR 90
R +++ + HL R
Sbjct: 236 TRSTKKLTVQRFPRILVLHLNR 257
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 23.3 bits (49), Expect = 8.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLK-RHTGEK 95
K + C +CE+R + S L H+K +H+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 23.3 bits (49), Expect = 9.4
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 95 KPFKCTICSHKAARKDHMKRHLQLKHNAD 123
K ++C C ++A ++K H++ KH+ +
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 23.6 bits (50), Expect = 9.6
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHT 92
EK F C CE S L H + HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.134 0.434
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,284,713
Number of extensions: 121639
Number of successful extensions: 1162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 921
Number of HSP's successfully gapped: 511
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)