RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4404
(151 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 44.2 bits (105), Expect = 7e-08
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKR-HTGEKPFKCTI 101
+ K + C C S+ L H+K+ HT E+P KC +
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 32.3 bits (74), Expect = 0.002
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 TGEKPFKCTICSHKAARKDHMKRHLQLKH 120
+ KP+ C C +R DH+ H++ H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 28.8 bits (65), Expect = 0.033
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRR-HTGEKAFHC 71
Y+C Q C DH+ HI++ HT E+ C
Sbjct: 6 YIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 43.6 bits (103), Expect = 1e-07
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE 94
R + + + C C S S L H + HTGE
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 35.1 bits (81), Expect = 1e-04
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ + +KC C + + +H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKH 31
Score = 23.2 bits (50), Expect = 3.6
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGE 66
Y C +C +S + +H R HTGE
Sbjct: 13 YKC--DECGKSFSHSSDLSKHRRTHTGE 38
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 41.5 bits (98), Expect = 6e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE 94
H+GEK + C C S+ S L H + HTGE
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 35.7 bits (83), Expect = 8e-05
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 91 HTGEKPFKCTICSHKAARKDHMKRH 115
H+GEKP+ C C +R + +H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQH 26
Score = 25.3 bits (56), Expect = 0.50
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGE 66
Y C +C S + +H R HTGE
Sbjct: 8 YGC--VECGKAFSRSSILVQHQRVHTGE 33
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 41.1 bits (97), Expect = 9e-07
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 91 HTGEKPFKCTICSHKAARKDHMKRHLQLKHNADL 124
H+GEKP++C IC + + MK H+ KH ++
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36
Score = 40.0 bits (94), Expect = 2e-06
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
R H+GEK + C C R +Q + H+ + E
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 39.3 bits (92), Expect = 4e-06
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
R HTGEK + C HC+ Q+ L H KR+
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 35.8 bits (83), Expect = 1e-04
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 89 KRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNAD 123
+ HTGEKP+ C+ C +K + H + H+ +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 37.0 bits (86), Expect = 3e-05
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTG 93
R TG K F CP C+ S+ L H KRH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 34.7 bits (80), Expect = 2e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 87 HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
+ TG KPF+C C +R DH+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 36.6 bits (85), Expect = 4e-05
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 68 AFHCPH--CEYRCSQQSALYNHLKRHTGEKPFKC 99
+F CP C + + L H+K H+ + + C
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 34.7 bits (80), Expect = 2e-04
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC 71
+ C C H++ H++ H+ + + C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 36.1 bits (83), Expect = 8e-05
Identities = 5/43 (11%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 55 HMRRHIRRHTGEKAFHCPHCE--YRCSQQSALYNHLKRHTGEK 95
+ ++++ +K F C ++ + +H++ H ++
Sbjct: 6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.6 bits (61), Expect = 0.10
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
+ CL+ C+ ++R HI+ H ++
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 24.9 bits (54), Expect = 1.1
Identities = 5/36 (13%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 86 NHLKRHTGEKPFKCTIC------SHKAARKDHMKRH 115
+ + +K F+C + + H++ H
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 34.7 bits (80), Expect = 2e-04
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE 94
+G++ F C C + ++ HLK HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 32.0 bits (73), Expect = 0.002
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 91 HTGEKPFKCTICSHKAARKDHMKRH 115
+G++PF C IC K + RH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH 26
Score = 22.4 bits (48), Expect = 5.7
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 41 CLYQKCSYHTGNSDHMRRHIRRHTGE 66
+ + C + RH++ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTDT 33
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 33.5 bits (77), Expect = 5e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
K F CP C R + L H+K H +K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 27.7 bits (62), Expect = 0.080
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
+ C +C SDH+ +HI+ H +K
Sbjct: 3 FAC--PECPKRFMRSDHLSKHIKTHQNKK 29
Score = 26.5 bits (59), Expect = 0.17
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 95 KPFKCTICSHKAARKDHMKRH 115
K F C C + R DH+ +H
Sbjct: 1 KKFACPECPKRFMRSDHLSKH 21
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 33.0 bits (76), Expect = 8e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
++F C C ++Q L H + HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.8 bits (60), Expect = 0.13
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
+VC + C+ +H++RH R HT EK
Sbjct: 3 FVC--EVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.4 bits (59), Expect = 0.20
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 95 KPFKCTICSHKAARKDHMKRH 115
+ F C +C+ AR++H+KRH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 32.7 bits (75), Expect = 0.001
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
++C + C SD ++RH R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.1 bits (63), Expect = 0.056
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 67 KAFHCPH--CEYRCSQQSALYNHLKRHTGEK 95
+ F C C R ++ L H + HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 31.2 bits (70), Expect = 0.006
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHL 116
+K + C C + +S H+ H G +P+ C +C K K H+ H+
Sbjct: 1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 30.0 bits (67), Expect = 0.018
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 45 KCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRH 91
+C + RH+ H G + + C C + + L H+K H
Sbjct: 7 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 30.3 bits (69), Expect = 0.008
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTG 93
+K F C C S+ L H++ HTG
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 27.2 bits (61), Expect = 0.12
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 EKPFKCTICSHKAARKDHMKRH 115
+KPF+C IC +R DH+ H
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTH 22
Score = 21.8 bits (47), Expect = 8.1
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTG 65
+ C + C + SDH+ HIR HTG
Sbjct: 4 FQC--RICMRNFSRSDHLTTHIRTHTG 28
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 30.2 bits (68), Expect = 0.008
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 94 EKPFKCTICSHKAARKDHMKRHLQL 118
EKPF C IC K AR D KRH ++
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKI 25
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 28.8 bits (65), Expect = 0.028
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGE 66
+ C ++ C ++++ H+R HTGE
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 25.0 bits (55), Expect = 0.64
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 67 KAFHCPH--CEYRCSQQSALYNHLKRHTGE 94
K C C S+ L HL+ HTGE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 28.2 bits (63), Expect = 0.050
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 96 PFKCTICSHKAARKDHMKRHLQLKHNADLS 125
P+ C +C+ R+D + RH Q H+ +L
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 30
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 29.4 bits (66), Expect = 0.073
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 94 EKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDNYLDVISFL-YLDQNNPES 151
+ C C A + H +L+H ++ SM+ + I + ++ NP
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLKNPTV 71
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 27.5 bits (61), Expect = 0.080
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 71 CPHCEYRCSQQSALYNHLKRHTGEK 95
C C R + S L H++ HT +
Sbjct: 4 CEECGIRAKKPSMLKKHIRTHTDVR 28
Score = 22.1 bits (47), Expect = 7.4
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
KY+C C +++HIR HT +
Sbjct: 1 KYICEE--CGIRAKKPSMLKKHIRTHTDVR 28
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.9 bits (60), Expect = 0.12
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHT 64
YVC + C+ S +++ HI H
Sbjct: 3 YVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 22.3 bits (48), Expect = 5.8
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 95 KPFKCTI--CSHKAARKDHMKRHL 116
+P+ C C+ K A+ ++K H+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHI 24
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 26.9 bits (60), Expect = 0.13
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 66 EKAFHCPH--CEYRCSQQSALYNHLKRHTGE 94
++ + C H C+ + L H K H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 26.9 bits (60), Expect = 0.15
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGE 66
Y C + C + + RH + H +
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 23.8 bits (52), Expect = 1.8
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 94 EKPFKCTI--CSHKAARKDHMKRH 115
++P+ C C R + RH
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRH 24
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 26.9 bits (59), Expect = 0.14
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGE 94
E+ F C C Y S L HL+ HTG+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 25.0 bits (54), Expect = 0.75
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 44 QKCSYHTGNSDHMRRHIRRHTGE 66
Q C Y + NS + H+R HTG+
Sbjct: 7 QICPYASRNSSQLTVHLRSHTGD 29
Score = 23.1 bits (49), Expect = 3.1
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 94 EKPFKCTICSHKAARKDHMKRHLQLKHNAD 123
E+PFKC IC + + + HL+ H D
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLR-SHTGD 29
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 26.9 bits (60), Expect = 0.14
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTG 65
Y C + C S + RHIR HTG
Sbjct: 3 YACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 23.4 bits (51), Expect = 2.9
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 67 KAFHCPH--CEYRCSQQSALYNHLKRHTG 93
+ + CP C+ R S+ + L H++ HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 26.9 bits (59), Expect = 0.16
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 94 EKPFKCTICSHKAARKDHMKRHLQ 117
EKP+ C +C + RKD M H++
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVR 24
Score = 22.3 bits (47), Expect = 6.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTG 93
EK + CP C R ++ + H++ H G
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 28
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 26.6 bits (59), Expect = 0.17
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGE 66
+ C ++ C ++R H+R HTG+
Sbjct: 3 FQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 23.1 bits (50), Expect = 3.5
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 67 KAFHCPH--CEYRCSQQSALYNHLKRHTGE 94
K F C C R S L H++ HTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein
{Shigella flexneri [TaxId: 623]}
Length = 233
Score = 28.6 bits (63), Expect = 0.24
Identities = 11/96 (11%), Positives = 25/96 (26%), Gaps = 7/96 (7%)
Query: 2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQK---CSYHTGNSDHMRR 58
IL++ Y +R S S+ +E + L + + + ++
Sbjct: 37 ILLL--YGSLRARSFSRLAVEEAA--RLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKE 92
Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE 94
+ E S + + E
Sbjct: 93 LRALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLE 128
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 26.3 bits (57), Expect = 0.29
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 67 KAFHCPHCEYRCSQQSALYNHLK-RHTGEK 95
K + C +CE+R + S L H+K +H+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 24.7 bits (53), Expect = 1.0
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 95 KPFKCTICSHKAARKDHMKRHLQLKHNAD 123
K ++C C ++A ++K H++ KH+ +
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 37
Score = 24.7 bits (54), Expect = 0.92
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 13/43 (30%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAAR 108
+K + CP C Y E P C +C +
Sbjct: 3 KKVYICPICGYT-------------AVDEAPEYCPVCGAPKEK 32
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 25.1 bits (54), Expect = 0.95
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 92 TGEKPFKCTICSHKAARKDHMKRH 115
TG KP++C IC+ + +D RH
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRH 24
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId:
7227]}
Length = 54
Score = 25.1 bits (54), Expect = 0.97
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 90 RHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
R E+P C IC + +++RHL+L+H
Sbjct: 18 RSQSEQPATCPICYAVIRQSRNLRRHLELRH 48
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 36
Score = 24.6 bits (54), Expect = 1.1
Identities = 12/43 (27%), Positives = 13/43 (30%), Gaps = 13/43 (30%)
Query: 66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAAR 108
+K CP C Y H GE KC IC
Sbjct: 3 DKFHLCPICGYI-------------HKGEDFEKCPICFRPKDT 32
>d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 290
Score = 26.1 bits (57), Expect = 2.0
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 82 SALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADL 124
L+ ++ + + R D R LQL H ++
Sbjct: 173 LTLFKDIEGKCKWDSLVAGVGLKTSLRPD---RRLQLVHEGNI 212
>d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase
{Escherichia coli [TaxId: 562]}
Length = 221
Score = 25.5 bits (55), Expect = 3.1
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 43 YQKCSYHTGNSDHMRRHIRRHTGEKAF 69
Y+ G+ D + + GEK
Sbjct: 5 YRAAPLCNGDPDDLILKLADMPGEKVA 31
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.3 bits (52), Expect = 3.5
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
+ C HC+ + + L +HL H E K A++ ++ L K
Sbjct: 14 LQNSTYQCKHCDSKLQSTAELTSHLNIHNEE--------FQKRAKRQERRKQLLSKQ 62
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.8 bits (48), Expect = 4.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 95 KPFKCTICSHKAARKDHMKRHLQLKHN 121
KP+KC C + AA + +HL++ +
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHSD 28
>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit
NirD {Vibrio parahaemolyticus [TaxId: 670]}
Length = 108
Score = 24.0 bits (51), Expect = 6.3
Identities = 6/39 (15%), Positives = 8/39 (20%)
Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYR 77
V Q R + GE P +
Sbjct: 36 GVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQH 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.134 0.434
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 590,171
Number of extensions: 27168
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 124
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.2 bits)