Query psy4405
Match_columns 91
No_of_seqs 137 out of 1117
Neff 8.9
Searched_HMMs 46136
Date Sat Aug 17 00:42:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0194 Gmk Guanylate kinase [ 99.9 2.7E-25 5.8E-30 140.3 7.7 80 5-86 3-98 (191)
2 PRK14737 gmk guanylate kinase; 99.9 6.9E-24 1.5E-28 134.9 8.0 82 5-87 3-100 (186)
3 PF00625 Guanylate_kin: Guanyl 99.9 3.2E-23 6.9E-28 131.1 6.8 83 5-87 1-99 (183)
4 PLN02772 guanylate kinase 99.9 7.1E-22 1.5E-26 136.8 8.3 85 3-87 132-232 (398)
5 smart00072 GuKc Guanylate kina 99.9 1.6E-21 3.5E-26 123.5 7.9 83 5-87 1-99 (184)
6 PRK14738 gmk guanylate kinase; 99.8 1E-20 2.2E-25 121.9 8.3 84 3-87 10-109 (206)
7 cd00071 GMPK Guanosine monopho 99.8 6.2E-20 1.3E-24 111.8 7.3 80 8-87 1-96 (137)
8 PRK00300 gmk guanylate kinase; 99.8 1.4E-18 3E-23 111.1 8.1 81 5-86 4-100 (205)
9 TIGR03263 guanyl_kin guanylate 99.8 2.2E-18 4.8E-23 108.2 7.7 80 6-86 1-96 (180)
10 KOG0707|consensus 99.7 1.4E-17 3.1E-22 108.0 7.4 86 1-86 32-133 (231)
11 KOG0609|consensus 99.7 2.2E-17 4.8E-22 116.8 7.6 87 1-87 335-437 (542)
12 PRK10078 ribose 1,5-bisphospho 99.6 6.1E-15 1.3E-19 93.5 6.4 78 5-86 1-94 (186)
13 PRK00091 miaA tRNA delta(2)-is 99.5 1.1E-13 2.3E-18 94.1 7.1 82 5-86 3-98 (307)
14 TIGR02322 phosphon_PhnN phosph 99.4 3.4E-13 7.4E-18 84.7 6.7 78 6-87 1-96 (179)
15 TIGR00174 miaA tRNA isopenteny 99.4 7.7E-13 1.7E-17 89.1 6.0 80 8-87 1-94 (287)
16 COG3709 Uncharacterized compon 99.3 6.4E-12 1.4E-16 78.4 6.7 82 5-87 4-100 (192)
17 PLN02840 tRNA dimethylallyltra 99.3 5.5E-12 1.2E-16 88.6 6.8 82 5-86 20-115 (421)
18 PLN02748 tRNA dimethylallyltra 99.2 3.4E-11 7.4E-16 85.7 6.6 83 5-87 21-117 (468)
19 PLN02165 adenylate isopentenyl 99.1 1.4E-10 3E-15 79.5 5.7 83 5-87 42-139 (334)
20 COG1116 TauB ABC-type nitrate/ 99.1 1.2E-10 2.6E-15 76.8 5.0 37 5-42 28-64 (248)
21 COG1131 CcmA ABC-type multidru 99.1 1.9E-10 4.1E-15 77.8 5.6 28 5-32 30-57 (293)
22 PRK14729 miaA tRNA delta(2)-is 99.1 2.9E-10 6.4E-15 77.1 6.4 78 6-87 4-98 (300)
23 COG3839 MalK ABC-type sugar tr 99.1 2.9E-10 6.4E-15 78.1 6.1 28 5-32 28-55 (338)
24 COG1120 FepC ABC-type cobalami 99.1 1.7E-10 3.6E-15 76.8 4.1 28 5-32 27-54 (258)
25 COG1121 ZnuC ABC-type Mn/Zn tr 99.1 6.3E-10 1.4E-14 73.9 6.7 28 5-32 29-56 (254)
26 PRK00098 GTPase RsgA; Reviewed 99.0 3.5E-10 7.6E-15 76.6 5.2 79 4-83 162-277 (298)
27 COG1134 TagH ABC-type polysacc 99.0 4.2E-10 9.1E-15 74.1 4.6 73 5-78 52-128 (249)
28 COG4555 NatA ABC-type Na+ tran 99.0 8.1E-10 1.8E-14 71.5 4.7 29 4-32 26-54 (245)
29 COG0324 MiaA tRNA delta(2)-iso 99.0 1.7E-09 3.6E-14 73.6 6.3 81 6-86 3-97 (308)
30 COG3842 PotA ABC-type spermidi 99.0 6.4E-10 1.4E-14 76.8 4.3 28 5-32 30-57 (352)
31 cd00227 CPT Chloramphenicol (C 99.0 1E-09 2.2E-14 68.9 4.5 83 5-87 1-91 (175)
32 COG4152 ABC-type uncharacteriz 98.9 1.2E-09 2.6E-14 72.5 4.1 28 5-32 27-54 (300)
33 COG1126 GlnQ ABC-type polar am 98.9 9.1E-10 2E-14 71.7 3.5 27 5-31 27-53 (240)
34 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.9 1.1E-09 2.3E-14 70.7 3.8 28 5-32 29-56 (218)
35 cd03222 ABC_RNaseL_inhibitor T 98.9 1E-09 2.2E-14 69.5 3.6 28 5-32 24-51 (177)
36 PRK13537 nodulation ABC transp 98.9 3E-09 6.4E-14 72.3 5.9 28 5-32 32-59 (306)
37 COG1136 SalX ABC-type antimicr 98.9 1.3E-09 2.7E-14 71.4 3.9 28 5-32 30-57 (226)
38 COG1124 DppF ABC-type dipeptid 98.9 3.5E-09 7.6E-14 69.8 6.0 28 5-32 32-59 (252)
39 TIGR01166 cbiO cobalt transpor 98.9 1.2E-09 2.6E-14 69.2 3.7 28 5-32 17-44 (190)
40 TIGR00235 udk uridine kinase. 98.9 1.3E-09 2.9E-14 70.0 3.9 31 1-31 1-31 (207)
41 cd03261 ABC_Org_Solvent_Resist 98.9 1.3E-09 2.8E-14 71.2 3.8 28 5-32 25-52 (235)
42 PRK13536 nodulation factor exp 98.9 3.6E-09 7.9E-14 72.9 6.2 28 5-32 66-93 (340)
43 cd03225 ABC_cobalt_CbiO_domain 98.9 1.3E-09 2.9E-14 69.9 3.7 28 5-32 26-53 (211)
44 PRK08356 hypothetical protein; 98.9 4.3E-09 9.4E-14 67.2 6.1 51 6-60 5-55 (195)
45 TIGR00960 3a0501s02 Type II (G 98.9 1.4E-09 3E-14 70.2 3.8 28 5-32 28-55 (216)
46 KOG0058|consensus 98.9 8.7E-10 1.9E-14 81.2 3.2 73 5-78 493-575 (716)
47 cd03226 ABC_cobalt_CbiO_domain 98.9 1.6E-09 3.4E-14 69.4 3.8 28 5-32 25-52 (205)
48 cd03259 ABC_Carb_Solutes_like 98.9 1.7E-09 3.6E-14 69.6 3.8 28 5-32 25-52 (213)
49 cd03265 ABC_DrrA DrrA is the A 98.9 1.8E-09 3.9E-14 69.8 3.9 28 5-32 25-52 (220)
50 TIGR02211 LolD_lipo_ex lipopro 98.9 2E-09 4.3E-14 69.6 4.0 28 5-32 30-57 (221)
51 cd03263 ABC_subfamily_A The AB 98.9 1.8E-09 3.9E-14 69.7 3.8 28 5-32 27-54 (220)
52 cd03301 ABC_MalK_N The N-termi 98.9 3.2E-09 6.9E-14 68.2 4.9 28 5-32 25-52 (213)
53 cd03257 ABC_NikE_OppD_transpor 98.9 2.1E-09 4.4E-14 69.7 4.0 28 5-32 30-57 (228)
54 cd03262 ABC_HisP_GlnQ_permease 98.9 1.9E-09 4.1E-14 69.2 3.8 28 5-32 25-52 (213)
55 PRK15177 Vi polysaccharide exp 98.9 1.9E-09 4.2E-14 69.7 3.8 28 5-32 12-39 (213)
56 cd03292 ABC_FtsE_transporter F 98.9 2E-09 4.3E-14 69.2 3.8 28 5-32 26-53 (214)
57 TIGR01188 drrA daunorubicin re 98.9 1.8E-09 4E-14 73.0 3.8 28 5-32 18-45 (302)
58 cd03269 ABC_putative_ATPase Th 98.9 1.9E-09 4.2E-14 69.2 3.8 28 5-32 25-52 (210)
59 COG4559 ABC-type hemin transpo 98.9 1.6E-09 3.4E-14 70.7 3.3 27 5-31 26-52 (259)
60 cd03219 ABC_Mj1267_LivG_branch 98.9 1.9E-09 4.1E-14 70.3 3.6 28 5-32 25-52 (236)
61 cd03258 ABC_MetN_methionine_tr 98.9 2.1E-09 4.5E-14 70.0 3.8 28 5-32 30-57 (233)
62 cd03224 ABC_TM1139_LivF_branch 98.9 1.9E-09 4.2E-14 69.6 3.6 28 5-32 25-52 (222)
63 TIGR02673 FtsE cell division A 98.9 2.1E-09 4.5E-14 69.2 3.7 28 5-32 27-54 (214)
64 TIGR03608 L_ocin_972_ABC putat 98.9 2.3E-09 4.9E-14 68.6 3.9 28 5-32 23-50 (206)
65 cd03293 ABC_NrtD_SsuB_transpor 98.9 2.2E-09 4.8E-14 69.4 3.8 28 5-32 29-56 (220)
66 TIGR02315 ABC_phnC phosphonate 98.9 2.1E-09 4.6E-14 70.3 3.8 28 5-32 27-54 (243)
67 cd03235 ABC_Metallic_Cations A 98.9 2E-09 4.4E-14 69.2 3.6 28 5-32 24-51 (213)
68 cd03296 ABC_CysA_sulfate_impor 98.9 2.3E-09 5E-14 70.2 3.8 28 5-32 27-54 (239)
69 cd03229 ABC_Class3 This class 98.9 2.4E-09 5.3E-14 67.3 3.8 28 5-32 25-52 (178)
70 PF00005 ABC_tran: ABC transpo 98.9 2.1E-09 4.6E-14 64.5 3.3 28 5-32 10-37 (137)
71 cd03256 ABC_PhnC_transporter A 98.9 2.5E-09 5.3E-14 69.9 3.8 28 5-32 26-53 (241)
72 PRK10584 putative ABC transpor 98.9 2.6E-09 5.7E-14 69.3 3.9 28 5-32 35-62 (228)
73 cd03218 ABC_YhbG The ABC trans 98.9 2.6E-09 5.5E-14 69.5 3.8 28 5-32 25-52 (232)
74 PRK11629 lolD lipoprotein tran 98.9 2.8E-09 6E-14 69.5 3.8 28 5-32 34-61 (233)
75 PRK11248 tauB taurine transpor 98.9 2.7E-09 5.9E-14 70.7 3.8 28 5-32 26-53 (255)
76 PRK13538 cytochrome c biogenes 98.8 3.5E-09 7.6E-14 67.9 4.1 28 5-32 26-53 (204)
77 cd03237 ABC_RNaseL_inhibitor_d 98.8 3E-09 6.6E-14 70.3 3.9 28 5-32 24-51 (246)
78 TIGR03410 urea_trans_UrtE urea 98.8 2.9E-09 6.2E-14 69.2 3.7 28 5-32 25-52 (230)
79 TIGR03864 PQQ_ABC_ATP ABC tran 98.8 3E-09 6.6E-14 69.5 3.8 28 5-32 26-53 (236)
80 cd03298 ABC_ThiQ_thiamine_tran 98.8 3.2E-09 6.9E-14 68.2 3.9 28 5-32 23-50 (211)
81 PRK13541 cytochrome c biogenes 98.8 3.4E-09 7.3E-14 67.5 3.9 28 5-32 25-52 (195)
82 cd03260 ABC_PstB_phosphate_tra 98.8 3.5E-09 7.6E-14 68.7 3.9 26 5-30 25-50 (227)
83 TIGR01189 ccmA heme ABC export 98.8 3.5E-09 7.6E-14 67.5 3.9 28 5-32 25-52 (198)
84 cd03295 ABC_OpuCA_Osmoprotecti 98.8 3.5E-09 7.5E-14 69.4 3.9 28 5-32 26-53 (242)
85 TIGR01288 nodI ATP-binding ABC 98.8 3.4E-09 7.4E-14 71.8 3.8 28 5-32 29-56 (303)
86 PRK11247 ssuB aliphatic sulfon 98.8 3.5E-09 7.7E-14 70.4 3.8 28 5-32 37-64 (257)
87 cd01130 VirB11-like_ATPase Typ 98.8 2.4E-08 5.2E-13 63.3 7.5 28 5-32 24-51 (186)
88 PRK10908 cell division protein 98.8 3.6E-09 7.8E-14 68.5 3.8 28 5-32 27-54 (222)
89 cd03216 ABC_Carb_Monos_I This 98.8 4E-09 8.7E-14 65.6 3.8 28 5-32 25-52 (163)
90 cd03266 ABC_NatA_sodium_export 98.8 3.6E-09 7.9E-14 68.2 3.8 28 5-32 30-57 (218)
91 PRK10771 thiQ thiamine transpo 98.8 6.2E-09 1.3E-13 67.9 4.9 28 5-32 24-51 (232)
92 TIGR01184 ntrCD nitrate transp 98.8 4.2E-09 9.1E-14 68.7 4.0 28 5-32 10-37 (230)
93 cd03254 ABCC_Glucan_exporter_l 98.8 4.1E-09 9E-14 68.4 3.9 28 5-32 28-55 (229)
94 PRK10895 lipopolysaccharide AB 98.8 4E-09 8.7E-14 69.0 3.8 28 5-32 28-55 (241)
95 cd03268 ABC_BcrA_bacitracin_re 98.8 4E-09 8.7E-14 67.6 3.7 28 5-32 25-52 (208)
96 COG3840 ThiQ ABC-type thiamine 98.8 5.7E-09 1.2E-13 66.8 4.3 28 5-32 24-51 (231)
97 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 4.2E-09 9.1E-14 64.4 3.6 28 5-32 25-52 (144)
98 PRK11174 cysteine/glutathione 98.8 1E-08 2.2E-13 74.6 6.0 27 5-31 375-401 (588)
99 PRK13539 cytochrome c biogenes 98.8 4.4E-09 9.6E-14 67.6 3.8 28 5-32 27-54 (207)
100 TIGR02770 nickel_nikD nickel i 98.8 4.2E-09 9E-14 68.6 3.7 28 5-32 11-38 (230)
101 TIGR00972 3a0107s01c2 phosphat 98.8 4.5E-09 9.7E-14 69.1 3.9 28 5-32 26-53 (247)
102 COG1117 PstB ABC-type phosphat 98.8 4.3E-09 9.3E-14 68.6 3.6 28 4-31 31-58 (253)
103 cd03236 ABC_RNaseL_inhibitor_d 98.8 4.4E-09 9.6E-14 69.9 3.8 28 5-32 25-52 (255)
104 PRK14250 phosphate ABC transpo 98.8 4.6E-09 9.9E-14 68.9 3.8 28 5-32 28-55 (241)
105 PRK15056 manganese/iron transp 98.8 4.4E-09 9.5E-14 70.2 3.8 28 5-32 32-59 (272)
106 COG0411 LivG ABC-type branched 98.8 7E-10 1.5E-14 73.0 -0.0 28 5-32 29-56 (250)
107 PRK10247 putative ABC transpor 98.8 4.7E-09 1E-13 68.2 3.8 28 5-32 32-59 (225)
108 cd03251 ABCC_MsbA MsbA is an e 98.8 4.6E-09 9.9E-14 68.4 3.8 28 5-32 27-54 (234)
109 PRK13641 cbiO cobalt transport 98.8 4.5E-09 9.8E-14 70.7 3.9 28 5-32 32-59 (287)
110 cd03294 ABC_Pro_Gly_Bertaine T 98.8 4.6E-09 1E-13 70.0 3.9 28 5-32 49-76 (269)
111 PRK13645 cbiO cobalt transport 98.8 4.4E-09 9.6E-14 70.7 3.8 28 5-32 36-63 (289)
112 cd03223 ABCD_peroxisomal_ALDP 98.8 4.9E-09 1.1E-13 65.4 3.7 28 5-32 26-53 (166)
113 cd03230 ABC_DR_subfamily_A Thi 98.8 5E-09 1.1E-13 65.6 3.7 28 5-32 25-52 (173)
114 TIGR03522 GldA_ABC_ATP gliding 98.8 5.1E-09 1.1E-13 70.9 4.0 28 5-32 27-54 (301)
115 PRK14267 phosphate ABC transpo 98.8 4.6E-09 1E-13 69.2 3.7 27 5-31 29-55 (253)
116 PRK13540 cytochrome c biogenes 98.8 5.3E-09 1.1E-13 66.9 3.9 28 5-32 26-53 (200)
117 cd03247 ABCC_cytochrome_bd The 98.8 5.4E-09 1.2E-13 65.7 3.9 28 5-32 27-54 (178)
118 TIGR01277 thiQ thiamine ABC tr 98.8 8.2E-09 1.8E-13 66.5 4.8 28 5-32 23-50 (213)
119 PRK11264 putative amino-acid A 98.8 4.8E-09 1E-13 68.9 3.8 28 5-32 28-55 (250)
120 TIGR02323 CP_lyasePhnK phospho 98.8 5.4E-09 1.2E-13 68.8 4.0 28 5-32 28-55 (253)
121 cd03228 ABCC_MRP_Like The MRP 98.8 5.4E-09 1.2E-13 65.4 3.8 28 5-32 27-54 (171)
122 cd03215 ABC_Carb_Monos_II This 98.8 5E-09 1.1E-13 66.1 3.6 28 5-32 25-52 (182)
123 PRK13649 cbiO cobalt transport 98.8 4.8E-09 1E-13 70.2 3.8 28 5-32 32-59 (280)
124 TIGR02324 CP_lyasePhnL phospho 98.8 5E-09 1.1E-13 67.9 3.7 28 5-32 33-60 (224)
125 PRK11300 livG leucine/isoleuci 98.8 4.7E-09 1E-13 69.2 3.7 28 5-32 30-57 (255)
126 cd03246 ABCC_Protease_Secretio 98.8 6.2E-09 1.3E-13 65.2 4.0 28 5-32 27-54 (173)
127 cd03233 ABC_PDR_domain1 The pl 98.8 4.5E-09 9.7E-14 67.4 3.4 27 5-31 32-58 (202)
128 cd03214 ABC_Iron-Siderophores_ 98.8 5.8E-09 1.3E-13 65.7 3.9 28 5-32 24-51 (180)
129 PRK09544 znuC high-affinity zi 98.8 5.5E-09 1.2E-13 69.2 3.9 28 5-32 29-56 (251)
130 COG4586 ABC-type uncharacteriz 98.8 5.2E-09 1.1E-13 70.3 3.8 28 5-32 49-76 (325)
131 PRK11124 artP arginine transpo 98.8 5.2E-09 1.1E-13 68.5 3.8 28 5-32 27-54 (242)
132 cd03238 ABC_UvrA The excision 98.8 4.8E-09 1E-13 66.4 3.5 23 5-27 20-42 (176)
133 cd03267 ABC_NatA_like Similar 98.8 5.4E-09 1.2E-13 68.5 3.8 28 5-32 46-73 (236)
134 cd03245 ABCC_bacteriocin_expor 98.8 5.5E-09 1.2E-13 67.5 3.8 28 5-32 29-56 (220)
135 PRK14242 phosphate transporter 98.8 5E-09 1.1E-13 69.0 3.7 26 5-30 31-56 (253)
136 PRK09493 glnQ glutamine ABC tr 98.8 5.2E-09 1.1E-13 68.5 3.7 28 5-32 26-53 (240)
137 PRK13638 cbiO cobalt transport 98.8 4.9E-09 1.1E-13 69.9 3.7 28 5-32 26-53 (271)
138 PRK11831 putative ABC transpor 98.8 5.2E-09 1.1E-13 69.7 3.8 28 5-32 32-59 (269)
139 cd03234 ABCG_White The White s 98.8 5.2E-09 1.1E-13 68.0 3.7 27 5-31 32-58 (226)
140 TIGR03005 ectoine_ehuA ectoine 98.8 5.5E-09 1.2E-13 68.9 3.8 28 5-32 25-52 (252)
141 PRK15112 antimicrobial peptide 98.8 5.5E-09 1.2E-13 69.5 3.8 28 5-32 38-65 (267)
142 cd03252 ABCC_Hemolysin The ABC 98.8 5.6E-09 1.2E-13 68.1 3.8 28 5-32 27-54 (237)
143 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.8 5.6E-09 1.2E-13 68.2 3.8 28 5-32 28-55 (238)
144 PRK10575 iron-hydroxamate tran 98.8 5E-09 1.1E-13 69.6 3.5 28 5-32 36-63 (265)
145 PRK13648 cbiO cobalt transport 98.8 5.6E-09 1.2E-13 69.5 3.7 28 5-32 34-61 (269)
146 PRK11153 metN DL-methionine tr 98.8 5.6E-09 1.2E-13 71.9 3.8 28 5-32 30-57 (343)
147 PRK11701 phnK phosphonate C-P 98.8 6E-09 1.3E-13 68.9 3.8 28 5-32 31-58 (258)
148 PRK10851 sulfate/thiosulfate t 98.8 7.7E-09 1.7E-13 71.6 4.5 28 5-32 27-54 (353)
149 PRK11650 ugpC glycerol-3-phosp 98.8 6.9E-09 1.5E-13 71.9 4.3 28 5-32 29-56 (356)
150 TIGR01978 sufC FeS assembly AT 98.8 5.1E-09 1.1E-13 68.5 3.4 26 5-30 25-50 (243)
151 PRK11000 maltose/maltodextrin 98.8 8E-09 1.7E-13 71.8 4.6 28 5-32 28-55 (369)
152 cd03231 ABC_CcmA_heme_exporter 98.8 6.5E-09 1.4E-13 66.5 3.8 28 5-32 25-52 (201)
153 COG3638 ABC-type phosphate/pho 98.8 7E-09 1.5E-13 68.3 4.0 28 5-32 29-56 (258)
154 PRK14247 phosphate ABC transpo 98.8 6E-09 1.3E-13 68.5 3.7 27 5-31 28-54 (250)
155 TIGR03411 urea_trans_UrtD urea 98.8 6.2E-09 1.3E-13 68.1 3.8 28 5-32 27-54 (242)
156 PRK11432 fbpC ferric transport 98.8 8E-09 1.7E-13 71.5 4.5 28 5-32 31-58 (351)
157 PRK13637 cbiO cobalt transport 98.8 6.1E-09 1.3E-13 70.1 3.8 28 5-32 32-59 (287)
158 TIGR02769 nickel_nikE nickel i 98.8 6.2E-09 1.3E-13 69.2 3.8 28 5-32 36-63 (265)
159 PRK13651 cobalt transporter AT 98.8 6E-09 1.3E-13 70.8 3.8 28 5-32 32-59 (305)
160 COG0410 LivF ABC-type branched 98.8 7.2E-09 1.6E-13 67.8 4.0 28 5-32 28-55 (237)
161 cd03244 ABCC_MRP_domain2 Domai 98.8 6.8E-09 1.5E-13 67.1 3.9 28 5-32 29-56 (221)
162 PRK14273 phosphate ABC transpo 98.8 6.1E-09 1.3E-13 68.7 3.7 27 5-31 32-58 (254)
163 PRK13547 hmuV hemin importer A 98.8 6E-09 1.3E-13 69.8 3.7 28 5-32 26-53 (272)
164 PRK14241 phosphate transporter 98.8 6.3E-09 1.4E-13 68.8 3.7 27 5-31 29-55 (258)
165 cd03253 ABCC_ATM1_transporter 98.8 6.6E-09 1.4E-13 67.7 3.8 28 5-32 26-53 (236)
166 COG4618 ArpD ABC-type protease 98.8 3.6E-09 7.7E-14 75.8 2.7 34 5-39 361-394 (580)
167 PRK11614 livF leucine/isoleuci 98.8 6.8E-09 1.5E-13 67.8 3.8 28 5-32 30-57 (237)
168 PRK13647 cbiO cobalt transport 98.8 6.6E-09 1.4E-13 69.5 3.8 28 5-32 30-57 (274)
169 PRK14274 phosphate ABC transpo 98.8 6.7E-09 1.5E-13 68.7 3.8 27 5-31 37-63 (259)
170 PRK13543 cytochrome c biogenes 98.8 7.6E-09 1.7E-13 66.8 4.0 28 5-32 36-63 (214)
171 cd03264 ABC_drug_resistance_li 98.8 6.1E-09 1.3E-13 66.9 3.5 27 5-32 25-51 (211)
172 PRK13548 hmuV hemin importer A 98.8 6.8E-09 1.5E-13 68.8 3.8 28 5-32 27-54 (258)
173 COG4107 PhnK ABC-type phosphon 98.8 1.8E-08 3.9E-13 64.4 5.5 77 5-82 31-139 (258)
174 TIGR03771 anch_rpt_ABC anchore 98.8 6.8E-09 1.5E-13 67.5 3.7 28 5-32 5-32 (223)
175 PRK13639 cbiO cobalt transport 98.8 6.6E-09 1.4E-13 69.5 3.7 28 5-32 27-54 (275)
176 cd03248 ABCC_TAP TAP, the Tran 98.8 7.6E-09 1.6E-13 67.1 3.9 28 5-32 39-66 (226)
177 PRK14259 phosphate ABC transpo 98.8 6.6E-09 1.4E-13 69.3 3.7 27 5-31 38-64 (269)
178 PRK13640 cbiO cobalt transport 98.8 7.3E-09 1.6E-13 69.5 3.9 28 5-32 32-59 (282)
179 TIGR03740 galliderm_ABC gallid 98.8 7.4E-09 1.6E-13 67.1 3.8 28 5-32 25-52 (223)
180 PRK13646 cbiO cobalt transport 98.8 8E-09 1.7E-13 69.5 4.0 28 5-32 32-59 (286)
181 PRK13652 cbiO cobalt transport 98.8 7.4E-09 1.6E-13 69.3 3.8 28 5-32 29-56 (277)
182 PRK14262 phosphate ABC transpo 98.8 7.1E-09 1.5E-13 68.2 3.7 27 5-31 28-54 (250)
183 PRK10744 pstB phosphate transp 98.8 6.9E-09 1.5E-13 68.8 3.6 27 5-31 38-64 (260)
184 PRK14235 phosphate transporter 98.8 7.8E-09 1.7E-13 68.8 3.8 27 5-31 44-70 (267)
185 PRK09452 potA putrescine/sperm 98.8 9.4E-09 2E-13 71.7 4.4 28 5-32 39-66 (375)
186 TIGR02868 CydC thiol reductant 98.8 4.1E-09 9E-14 75.7 2.7 28 5-32 360-387 (529)
187 PRK09536 btuD corrinoid ABC tr 98.8 6.9E-09 1.5E-13 73.0 3.7 28 5-32 28-55 (402)
188 PRK13644 cbiO cobalt transport 98.8 7.5E-09 1.6E-13 69.2 3.7 28 5-32 27-54 (274)
189 TIGR02142 modC_ABC molybdenum 98.8 7.7E-09 1.7E-13 71.5 3.9 28 5-32 22-49 (354)
190 PRK13632 cbiO cobalt transport 98.8 7.7E-09 1.7E-13 69.0 3.7 28 5-32 34-61 (271)
191 PRK10253 iron-enterobactin tra 98.8 7E-09 1.5E-13 68.9 3.5 28 5-32 32-59 (265)
192 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.8 7.7E-09 1.7E-13 67.3 3.7 28 5-32 47-74 (224)
193 PRK13635 cbiO cobalt transport 98.8 8.7E-09 1.9E-13 69.1 4.0 28 5-32 32-59 (279)
194 cd03300 ABC_PotA_N PotA is an 98.8 1.3E-08 2.8E-13 66.4 4.7 28 5-32 25-52 (232)
195 cd03250 ABCC_MRP_domain1 Domai 98.8 8.9E-09 1.9E-13 65.9 3.8 28 5-32 30-57 (204)
196 PRK14253 phosphate ABC transpo 98.8 8.8E-09 1.9E-13 67.7 3.8 27 5-31 28-54 (249)
197 PRK13650 cbiO cobalt transport 98.8 8.9E-09 1.9E-13 69.0 3.8 28 5-32 32-59 (279)
198 PRK09984 phosphonate/organopho 98.8 8.4E-09 1.8E-13 68.4 3.7 27 5-31 29-55 (262)
199 cd03369 ABCC_NFT1 Domain 2 of 98.8 9.4E-09 2E-13 65.9 3.8 28 5-32 33-60 (207)
200 TIGR00968 3a0106s01 sulfate AB 98.8 1.5E-08 3.3E-13 66.3 4.8 28 5-32 25-52 (237)
201 PRK13546 teichoic acids export 98.8 8.9E-09 1.9E-13 68.7 3.8 28 5-32 49-76 (264)
202 PRK14248 phosphate ABC transpo 98.8 8.8E-09 1.9E-13 68.5 3.7 26 5-30 46-71 (268)
203 PRK14256 phosphate ABC transpo 98.8 9.1E-09 2E-13 67.8 3.8 27 5-31 29-55 (252)
204 TIGR03265 PhnT2 putative 2-ami 98.8 9.7E-09 2.1E-13 71.1 4.0 28 5-32 29-56 (353)
205 PRK14237 phosphate transporter 98.8 9.3E-09 2E-13 68.5 3.8 27 5-31 45-71 (267)
206 COG4604 CeuD ABC-type enteroch 98.8 9.5E-09 2.1E-13 66.5 3.7 27 5-31 26-52 (252)
207 PRK14240 phosphate transporter 98.8 8.9E-09 1.9E-13 67.7 3.7 27 5-31 28-54 (250)
208 cd03232 ABC_PDR_domain2 The pl 98.8 9E-09 1.9E-13 65.5 3.6 26 5-30 32-57 (192)
209 cd03290 ABCC_SUR1_N The SUR do 98.8 9.5E-09 2.1E-13 66.4 3.7 28 5-32 26-53 (218)
210 PRK10418 nikD nickel transport 98.8 9.1E-09 2E-13 68.0 3.7 28 5-32 28-55 (254)
211 PRK11144 modC molybdate transp 98.7 9.2E-09 2E-13 71.1 3.8 28 5-32 23-50 (352)
212 TIGR02314 ABC_MetN D-methionin 98.7 9.4E-09 2E-13 71.0 3.9 28 5-32 30-57 (343)
213 PRK14268 phosphate ABC transpo 98.7 9.4E-09 2E-13 68.0 3.7 27 5-31 37-63 (258)
214 TIGR03873 F420-0_ABC_ATP propo 98.7 9.2E-09 2E-13 68.0 3.6 28 5-32 26-53 (256)
215 PRK14251 phosphate ABC transpo 98.7 9.9E-09 2.2E-13 67.5 3.8 27 5-31 29-55 (251)
216 PRK13634 cbiO cobalt transport 98.7 9.6E-09 2.1E-13 69.2 3.8 28 5-32 32-59 (290)
217 PRK03695 vitamin B12-transport 98.7 9E-09 1.9E-13 67.9 3.5 27 5-31 21-47 (248)
218 KOG0057|consensus 98.7 1E-08 2.2E-13 73.9 3.9 76 5-82 377-462 (591)
219 COG4988 CydD ABC-type transpor 98.7 2.7E-08 5.9E-13 72.0 6.1 33 5-38 346-378 (559)
220 PRK11231 fecE iron-dicitrate t 98.7 9.9E-09 2.2E-13 67.8 3.7 28 5-32 27-54 (255)
221 COG4133 CcmA ABC-type transpor 98.7 1.3E-08 2.7E-13 65.2 3.9 28 5-32 27-54 (209)
222 PRK10619 histidine/lysine/argi 98.7 1E-08 2.3E-13 67.7 3.7 28 5-32 30-57 (257)
223 COG2274 SunT ABC-type bacterio 98.7 5.6E-09 1.2E-13 77.7 2.7 28 5-32 498-525 (709)
224 TIGR01186 proV glycine betaine 98.7 1E-08 2.2E-13 71.3 3.7 28 5-32 18-45 (363)
225 PRK14270 phosphate ABC transpo 98.7 1.2E-08 2.5E-13 67.3 3.8 27 5-31 29-55 (251)
226 PRK14249 phosphate ABC transpo 98.7 1.1E-08 2.5E-13 67.3 3.8 28 5-32 29-56 (251)
227 PRK13409 putative ATPase RIL; 98.7 1.2E-08 2.6E-13 74.7 4.2 28 5-32 98-125 (590)
228 PRK14255 phosphate ABC transpo 98.7 1.2E-08 2.5E-13 67.3 3.7 26 5-30 30-55 (252)
229 PRK14260 phosphate ABC transpo 98.7 1.2E-08 2.7E-13 67.5 3.8 27 5-31 32-58 (259)
230 COG4619 ABC-type uncharacteriz 98.7 1.3E-08 2.9E-13 64.5 3.7 28 5-32 28-55 (223)
231 PRK14239 phosphate transporter 98.7 1.1E-08 2.4E-13 67.3 3.5 26 5-30 30-55 (252)
232 PRK13643 cbiO cobalt transport 98.7 1.3E-08 2.9E-13 68.5 3.9 28 5-32 31-58 (288)
233 COG2884 FtsE Predicted ATPase 98.7 2.4E-08 5.3E-13 64.1 4.9 28 5-32 27-54 (223)
234 PF13207 AAA_17: AAA domain; P 98.7 9.2E-09 2E-13 60.5 2.8 23 8-30 1-23 (121)
235 PRK14238 phosphate transporter 98.7 1.3E-08 2.8E-13 67.9 3.8 27 5-31 49-75 (271)
236 PRK14261 phosphate ABC transpo 98.7 1.2E-08 2.7E-13 67.2 3.7 26 5-30 31-56 (253)
237 PRK14244 phosphate ABC transpo 98.7 1.3E-08 2.9E-13 67.0 3.8 27 5-31 30-56 (251)
238 PRK13633 cobalt transporter AT 98.7 1.2E-08 2.6E-13 68.4 3.7 28 5-32 35-62 (280)
239 PRK11022 dppD dipeptide transp 98.7 1.2E-08 2.6E-13 69.9 3.7 27 5-31 32-58 (326)
240 COG1118 CysA ABC-type sulfate/ 98.7 1.1E-08 2.4E-13 69.6 3.4 28 5-32 27-54 (345)
241 TIGR03258 PhnT 2-aminoethylpho 98.7 1.3E-08 2.8E-13 70.7 3.9 28 5-32 30-57 (362)
242 PRK05480 uridine/cytidine kina 98.7 1.6E-08 3.5E-13 65.0 4.0 27 5-31 5-31 (209)
243 PRK10762 D-ribose transporter 98.7 1.2E-08 2.5E-13 73.2 3.7 28 5-32 29-56 (501)
244 PRK14243 phosphate transporter 98.7 1.3E-08 2.8E-13 67.7 3.7 27 5-31 35-61 (264)
245 PRK14272 phosphate ABC transpo 98.7 1.4E-08 3E-13 66.9 3.8 27 5-31 29-55 (252)
246 PRK14265 phosphate ABC transpo 98.7 1.3E-08 2.9E-13 68.0 3.7 27 5-31 45-71 (274)
247 COG1127 Ttg2A ABC-type transpo 98.7 1.4E-08 3.1E-13 67.0 3.7 28 5-32 33-60 (263)
248 PRK13636 cbiO cobalt transport 98.7 1.3E-08 2.9E-13 68.3 3.7 28 5-32 31-58 (283)
249 COG1125 OpuBA ABC-type proline 98.7 1.6E-08 3.5E-13 67.5 4.0 28 5-32 26-53 (309)
250 cd03291 ABCC_CFTR1 The CFTR su 98.7 1.4E-08 3.1E-13 68.4 3.8 28 5-32 62-89 (282)
251 PRK10419 nikE nickel transport 98.7 1.4E-08 2.9E-13 67.8 3.7 28 5-32 37-64 (268)
252 PRK15093 antimicrobial peptide 98.7 1.4E-08 3E-13 69.6 3.8 27 5-31 32-58 (330)
253 TIGR02982 heterocyst_DevA ABC 98.7 1.5E-08 3.3E-13 65.5 3.8 28 5-32 30-57 (220)
254 PRK14245 phosphate ABC transpo 98.7 1.4E-08 2.9E-13 66.9 3.6 25 5-29 28-52 (250)
255 PRK10070 glycine betaine trans 98.7 1.4E-08 3E-13 71.4 3.8 28 5-32 53-80 (400)
256 PRK11607 potG putrescine trans 98.7 1.9E-08 4.2E-13 70.2 4.5 28 5-32 44-71 (377)
257 PRK14269 phosphate ABC transpo 98.7 1.4E-08 3.1E-13 66.7 3.6 26 5-30 27-52 (246)
258 PRK10938 putative molybdenum t 98.7 1.3E-08 2.9E-13 72.7 3.7 28 5-32 28-55 (490)
259 cd03213 ABCG_EPDR ABCG transpo 98.7 1.6E-08 3.4E-13 64.5 3.7 26 5-30 34-59 (194)
260 COG0396 sufC Cysteine desulfur 98.7 1.3E-08 2.8E-13 66.8 3.4 26 5-30 29-54 (251)
261 PRK14236 phosphate transporter 98.7 1.5E-08 3.3E-13 67.6 3.8 27 5-31 50-76 (272)
262 PRK13631 cbiO cobalt transport 98.7 1.7E-08 3.7E-13 69.1 4.1 28 5-32 51-78 (320)
263 PRK14271 phosphate ABC transpo 98.7 1.5E-08 3.3E-13 67.9 3.8 27 5-31 46-72 (276)
264 cd00820 PEPCK_HprK Phosphoenol 98.7 1.5E-08 3.3E-13 59.4 3.3 23 5-27 14-36 (107)
265 PRK14254 phosphate ABC transpo 98.7 1.5E-08 3.3E-13 68.1 3.8 27 5-31 64-90 (285)
266 PRK13549 xylose transporter AT 98.7 1.3E-08 2.9E-13 73.0 3.6 27 5-31 30-56 (506)
267 COG1122 CbiO ABC-type cobalt t 98.7 6.3E-08 1.4E-12 63.9 6.4 30 5-34 29-58 (235)
268 cd03297 ABC_ModC_molybdenum_tr 98.7 1.6E-08 3.4E-13 65.2 3.5 26 7-32 24-49 (214)
269 TIGR03415 ABC_choXWV_ATP choli 98.7 1.8E-08 4E-13 70.4 4.0 28 5-32 49-76 (382)
270 PRK15134 microcin C ABC transp 98.7 1.6E-08 3.4E-13 73.0 3.7 27 5-31 34-60 (529)
271 PF13555 AAA_29: P-loop contai 98.7 2.5E-08 5.4E-13 53.1 3.6 25 6-30 23-47 (62)
272 PRK09580 sufC cysteine desulfu 98.7 1.4E-08 3.1E-13 66.6 3.2 26 5-30 26-51 (248)
273 PRK14275 phosphate ABC transpo 98.7 1.7E-08 3.6E-13 68.0 3.6 26 5-30 64-89 (286)
274 TIGR03797 NHPM_micro_ABC2 NHPM 98.7 3.6E-08 7.8E-13 73.0 5.6 28 5-32 478-505 (686)
275 CHL00131 ycf16 sulfate ABC tra 98.7 1.5E-08 3.2E-13 66.7 3.3 25 5-29 32-56 (252)
276 PRK15064 ABC transporter ATP-b 98.7 1.7E-08 3.7E-13 72.8 3.8 28 5-32 26-53 (530)
277 PRK15439 autoinducer 2 ABC tra 98.7 1.8E-08 3.9E-13 72.4 3.8 28 5-32 36-63 (510)
278 PRK13642 cbiO cobalt transport 98.7 1.9E-08 4.1E-13 67.3 3.7 28 5-32 32-59 (277)
279 PRK14263 phosphate ABC transpo 98.7 2E-08 4.3E-13 66.8 3.7 27 5-31 33-59 (261)
280 COG0572 Udk Uridine kinase [Nu 98.7 2.3E-08 5E-13 65.1 3.9 28 5-32 7-34 (218)
281 PRK14252 phosphate ABC transpo 98.7 2E-08 4.4E-13 66.7 3.8 27 5-31 41-67 (265)
282 PRK14258 phosphate ABC transpo 98.7 2.1E-08 4.4E-13 66.6 3.7 28 5-32 32-59 (261)
283 PRK09700 D-allose transporter 98.7 1.8E-08 3.9E-13 72.3 3.7 28 5-32 288-315 (510)
284 cd00267 ABC_ATPase ABC (ATP-bi 98.7 2.3E-08 5E-13 61.6 3.7 28 5-32 24-51 (157)
285 PRK09700 D-allose transporter 98.7 1.7E-08 3.7E-13 72.4 3.6 28 5-32 30-57 (510)
286 TIGR00958 3a01208 Conjugate Tr 98.7 3E-08 6.5E-13 73.8 4.9 28 5-32 506-533 (711)
287 cd03299 ABC_ModC_like Archeal 98.7 2.5E-08 5.4E-13 65.2 4.0 28 5-32 24-51 (235)
288 cd03272 ABC_SMC3_euk Eukaryoti 98.7 2.1E-08 4.5E-13 65.6 3.6 28 3-30 20-47 (243)
289 PRK09825 idnK D-gluconate kina 98.7 2.6E-08 5.6E-13 62.9 3.8 27 5-31 2-28 (176)
290 COG1132 MdlB ABC-type multidru 98.7 1E-08 2.2E-13 74.4 2.3 28 5-32 354-381 (567)
291 PRK14246 phosphate ABC transpo 98.7 2.2E-08 4.8E-13 66.4 3.7 28 5-32 35-62 (257)
292 cd03288 ABCC_SUR2 The SUR doma 98.7 2.3E-08 5.1E-13 66.2 3.8 28 5-32 46-73 (257)
293 cd03217 ABC_FeS_Assembly ABC-t 98.7 2.2E-08 4.7E-13 64.1 3.5 26 5-30 25-50 (200)
294 PRK11308 dppF dipeptide transp 98.7 2.3E-08 5E-13 68.6 3.8 28 5-32 40-67 (327)
295 PRK10938 putative molybdenum t 98.7 2.1E-08 4.5E-13 71.7 3.6 27 5-31 285-311 (490)
296 PRK10636 putative ABC transpor 98.7 2.2E-08 4.8E-13 73.8 3.7 27 5-31 26-52 (638)
297 PRK11819 putative ABC transpor 98.7 2.5E-08 5.5E-13 72.4 3.9 28 5-32 32-59 (556)
298 PRK10261 glutathione transport 98.7 2.3E-08 4.9E-13 73.6 3.7 28 5-32 41-68 (623)
299 PRK15079 oligopeptide ABC tran 98.7 2.6E-08 5.7E-13 68.4 3.8 28 5-32 46-73 (331)
300 TIGR02633 xylG D-xylose ABC tr 98.7 2.3E-08 5.1E-13 71.6 3.6 27 5-31 26-52 (500)
301 TIGR03269 met_CoM_red_A2 methy 98.7 2.6E-08 5.6E-13 71.7 3.8 28 5-32 309-336 (520)
302 PRK09473 oppD oligopeptide tra 98.6 2.4E-08 5.2E-13 68.6 3.5 28 5-32 41-68 (330)
303 PRK14266 phosphate ABC transpo 98.6 2.8E-08 6E-13 65.4 3.7 26 5-30 28-53 (250)
304 TIGR02633 xylG D-xylose ABC tr 98.6 2.4E-08 5.2E-13 71.5 3.6 27 5-31 285-311 (500)
305 PRK14264 phosphate ABC transpo 98.6 2.9E-08 6.3E-13 67.4 3.7 27 5-31 70-96 (305)
306 PRK15134 microcin C ABC transp 98.6 2.6E-08 5.7E-13 71.8 3.7 27 5-31 311-337 (529)
307 PRK11147 ABC transporter ATPas 98.6 2.5E-08 5.5E-13 73.4 3.7 28 5-32 28-55 (635)
308 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 2.9E-08 6.3E-13 72.0 3.9 28 5-32 30-57 (552)
309 TIGR03269 met_CoM_red_A2 methy 98.6 2.7E-08 5.8E-13 71.6 3.7 26 5-30 25-50 (520)
310 PRK11288 araG L-arabinose tran 98.6 2.4E-08 5.2E-13 71.6 3.4 28 5-32 278-305 (501)
311 PRK10636 putative ABC transpor 98.6 2.8E-08 6.1E-13 73.3 3.8 28 5-32 337-364 (638)
312 PRK13549 xylose transporter AT 98.6 2.7E-08 5.8E-13 71.4 3.6 27 5-31 287-313 (506)
313 PRK10982 galactose/methyl gala 98.6 2.7E-08 5.9E-13 71.1 3.6 28 5-32 23-50 (491)
314 KOG0056|consensus 98.6 2.7E-08 5.8E-13 71.8 3.5 27 5-31 563-589 (790)
315 PRK15064 ABC transporter ATP-b 98.6 3E-08 6.6E-13 71.5 3.8 28 5-32 344-371 (530)
316 PRK10762 D-ribose transporter 98.6 3E-08 6.4E-13 71.1 3.6 28 5-32 277-304 (501)
317 PRK15439 autoinducer 2 ABC tra 98.6 2.9E-08 6.3E-13 71.4 3.5 28 5-32 288-315 (510)
318 KOG0055|consensus 98.6 2.9E-08 6.3E-13 76.8 3.6 77 5-82 378-464 (1228)
319 cd03289 ABCC_CFTR2 The CFTR su 98.6 3.9E-08 8.4E-13 66.1 3.8 27 5-31 29-55 (275)
320 COG1123 ATPase components of v 98.6 1.1E-07 2.3E-12 68.9 6.2 28 5-32 316-343 (539)
321 PRK11288 araG L-arabinose tran 98.6 3.5E-08 7.5E-13 70.8 3.7 28 5-32 29-56 (501)
322 PRK11147 ABC transporter ATPas 98.6 3.5E-08 7.5E-13 72.7 3.8 28 5-32 344-371 (635)
323 KOG1384|consensus 98.6 6.3E-08 1.4E-12 66.2 4.6 83 5-87 6-102 (348)
324 PRK13657 cyclic beta-1,2-gluca 98.6 7E-08 1.5E-12 70.3 5.1 28 5-32 360-387 (588)
325 cd03273 ABC_SMC2_euk Eukaryoti 98.6 4.9E-08 1.1E-12 64.4 3.9 29 3-31 22-50 (251)
326 PRK11819 putative ABC transpor 98.6 4.4E-08 9.6E-13 71.1 4.0 28 5-32 349-376 (556)
327 cd03283 ABC_MutS-like MutS-lik 98.6 4.3E-08 9.4E-13 63.0 3.5 26 5-30 24-49 (199)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 4E-08 8.8E-13 71.2 3.6 28 5-32 347-374 (552)
329 PRK00131 aroK shikimate kinase 98.6 6.1E-08 1.3E-12 60.0 3.9 29 1-31 1-29 (175)
330 PRK10261 glutathione transport 98.6 4.6E-08 1E-12 71.9 3.8 28 5-32 349-376 (623)
331 PRK13409 putative ATPase RIL; 98.6 5E-08 1.1E-12 71.5 3.8 28 5-32 364-391 (590)
332 PRK10982 galactose/methyl gala 98.6 4.3E-08 9.3E-13 70.1 3.4 28 5-32 273-300 (491)
333 cd03274 ABC_SMC4_euk Eukaryoti 98.6 4.6E-08 1E-12 63.4 3.3 23 7-29 26-48 (212)
334 PF03193 DUF258: Protein of un 98.6 6.4E-08 1.4E-12 60.6 3.7 26 5-30 34-59 (161)
335 cd02025 PanK Pantothenate kina 98.6 3.4E-08 7.5E-13 64.4 2.6 24 8-31 1-24 (220)
336 PRK11160 cysteine/glutathione 98.6 7.1E-08 1.5E-12 70.3 4.3 28 5-32 365-392 (574)
337 PRK09270 nucleoside triphospha 98.6 5.8E-08 1.3E-12 63.4 3.5 28 5-32 32-59 (229)
338 cd02023 UMPK Uridine monophosp 98.6 4.6E-08 9.9E-13 62.3 3.0 23 8-30 1-23 (198)
339 COG4525 TauB ABC-type taurine 98.6 6.7E-08 1.4E-12 62.6 3.6 28 5-32 30-57 (259)
340 PLN03073 ABC transporter F fam 98.6 6E-08 1.3E-12 72.5 3.7 28 5-32 534-561 (718)
341 PRK08233 hypothetical protein; 98.6 8.5E-08 1.8E-12 59.9 3.9 26 6-31 3-28 (182)
342 cd03278 ABC_SMC_barmotin Barmo 98.6 6.4E-08 1.4E-12 62.1 3.4 26 5-31 22-47 (197)
343 cd03279 ABC_sbcCD SbcCD and ot 98.5 6.5E-08 1.4E-12 62.5 3.2 25 5-29 27-51 (213)
344 PRK13545 tagH teichoic acids e 98.5 7.2E-08 1.6E-12 69.9 3.8 28 5-32 49-76 (549)
345 KOG0061|consensus 98.5 1.2E-07 2.6E-12 69.8 4.9 38 5-42 55-94 (613)
346 PRK11176 lipid transporter ATP 98.5 9.7E-08 2.1E-12 69.4 4.2 28 5-32 368-395 (582)
347 PLN03211 ABC transporter G-25; 98.5 7.4E-08 1.6E-12 71.4 3.6 27 5-31 93-119 (659)
348 PRK14257 phosphate ABC transpo 98.5 8.4E-08 1.8E-12 65.9 3.7 27 5-31 107-133 (329)
349 PTZ00265 multidrug resistance 98.5 5.2E-08 1.1E-12 77.3 2.9 28 5-32 1193-1220(1466)
350 COG1162 Predicted GTPases [Gen 98.5 2E-07 4.4E-12 63.3 5.3 27 4-30 162-188 (301)
351 COG0563 Adk Adenylate kinase a 98.5 8E-08 1.7E-12 61.0 3.3 24 8-31 2-25 (178)
352 TIGR03796 NHPM_micro_ABC1 NHPM 98.5 9.2E-08 2E-12 71.0 4.0 28 5-32 504-531 (710)
353 COG4608 AppF ABC-type oligopep 98.5 9.9E-08 2.1E-12 63.8 3.7 28 5-32 38-65 (268)
354 PF13671 AAA_33: AAA domain; P 98.5 1.1E-07 2.5E-12 57.2 3.6 24 8-31 1-24 (143)
355 PRK10522 multidrug transporter 98.5 1E-07 2.2E-12 69.0 3.9 28 5-32 348-375 (547)
356 TIGR01360 aden_kin_iso1 adenyl 98.5 1.1E-07 2.3E-12 59.7 3.5 26 5-30 2-27 (188)
357 TIGR02857 CydD thiol reductant 98.5 1.2E-07 2.5E-12 68.3 4.1 28 5-32 347-374 (529)
358 PLN03073 ABC transporter F fam 98.5 8.1E-08 1.8E-12 71.8 3.4 25 5-29 202-226 (718)
359 TIGR00554 panK_bact pantothena 98.5 9.4E-08 2E-12 64.8 3.4 27 5-31 61-87 (290)
360 PRK10789 putative multidrug tr 98.5 1.2E-07 2.5E-12 69.0 4.1 28 5-32 340-367 (569)
361 COG1129 MglA ABC-type sugar tr 98.5 9.2E-08 2E-12 68.7 3.4 28 5-32 33-60 (500)
362 PRK08118 topology modulation p 98.5 1.1E-07 2.4E-12 59.6 3.4 24 8-31 3-26 (167)
363 smart00382 AAA ATPases associa 98.5 1.6E-07 3.5E-12 54.9 3.7 27 6-32 2-28 (148)
364 PF00485 PRK: Phosphoribulokin 98.5 9.8E-08 2.1E-12 60.8 2.9 24 8-31 1-24 (194)
365 TIGR01193 bacteriocin_ABC ABC- 98.5 1.4E-07 3.1E-12 70.0 4.1 28 5-32 499-526 (708)
366 PRK06762 hypothetical protein; 98.5 1.4E-07 3.1E-12 58.5 3.5 26 6-31 2-27 (166)
367 KOG0055|consensus 98.5 9E-08 2E-12 74.2 3.1 28 5-32 1015-1042(1228)
368 TIGR02204 MsbA_rel ABC transpo 98.5 1.4E-07 3.1E-12 68.4 3.9 28 5-32 365-392 (576)
369 COG4136 ABC-type uncharacteriz 98.5 1.8E-07 4E-12 58.5 3.8 30 5-34 27-56 (213)
370 PRK10790 putative multidrug tr 98.5 1.4E-07 3E-12 68.8 3.8 28 5-32 366-393 (592)
371 TIGR01842 type_I_sec_PrtD type 98.5 1.5E-07 3.3E-12 68.1 3.8 28 5-32 343-370 (544)
372 cd03243 ABC_MutS_homologs The 98.5 1.5E-07 3.2E-12 60.4 3.3 24 5-28 28-51 (202)
373 KOG3354|consensus 98.5 3E-07 6.5E-12 57.4 4.5 24 8-31 14-37 (191)
374 TIGR03375 type_I_sec_LssB type 98.5 1.8E-07 3.9E-12 69.4 4.2 28 5-32 490-517 (694)
375 TIGR00954 3a01203 Peroxysomal 98.5 1.5E-07 3.2E-12 69.7 3.7 28 5-32 477-504 (659)
376 cd03270 ABC_UvrA_I The excisio 98.5 1.6E-07 3.5E-12 61.3 3.5 19 5-23 20-38 (226)
377 PRK07261 topology modulation p 98.5 1.6E-07 3.6E-12 58.9 3.4 24 8-31 2-25 (171)
378 PRK05541 adenylylsulfate kinas 98.5 1.8E-07 3.9E-12 58.6 3.6 27 5-31 6-32 (176)
379 COG4138 BtuD ABC-type cobalami 98.5 2E-07 4.3E-12 59.7 3.6 28 5-32 24-51 (248)
380 COG1135 AbcC ABC-type metal io 98.5 2.2E-07 4.7E-12 63.4 4.0 27 5-31 31-57 (339)
381 TIGR01194 cyc_pep_trnsptr cycl 98.5 2E-07 4.4E-12 67.7 4.1 28 5-32 367-394 (555)
382 COG0488 Uup ATPase components 98.5 1.9E-07 4.1E-12 67.8 3.8 28 5-32 28-55 (530)
383 COG0488 Uup ATPase components 98.5 1.8E-07 4E-12 67.8 3.8 28 5-32 347-374 (530)
384 COG1119 ModF ABC-type molybden 98.4 2.1E-07 4.5E-12 61.6 3.6 28 5-32 56-83 (257)
385 TIGR02788 VirB11 P-type DNA tr 98.4 1.3E-06 2.8E-11 59.5 7.5 28 5-32 143-170 (308)
386 cd02019 NK Nucleoside/nucleoti 98.4 2E-07 4.3E-12 50.4 2.9 23 8-30 1-23 (69)
387 TIGR01192 chvA glucan exporter 98.4 2E-07 4.3E-12 68.1 3.8 28 5-32 360-387 (585)
388 PRK14527 adenylate kinase; Pro 98.4 3E-07 6.6E-12 58.4 4.1 29 3-31 3-31 (191)
389 PTZ00301 uridine kinase; Provi 98.4 2.1E-07 4.6E-12 60.4 3.2 25 6-30 3-27 (210)
390 PRK10751 molybdopterin-guanine 98.4 2.9E-07 6.2E-12 58.2 3.7 27 5-31 5-31 (173)
391 TIGR02203 MsbA_lipidA lipid A 98.4 2.8E-07 6.1E-12 66.8 4.1 28 5-32 357-384 (571)
392 COG3845 ABC-type uncharacteriz 98.4 2.2E-07 4.7E-12 66.4 3.4 28 5-32 29-56 (501)
393 cd01854 YjeQ_engC YjeQ/EngC. 98.4 9.5E-07 2.1E-11 59.7 6.3 27 5-31 160-186 (287)
394 cd01131 PilT Pilus retraction 98.4 1.2E-06 2.5E-11 56.2 6.4 24 8-31 3-26 (198)
395 PRK14530 adenylate kinase; Pro 98.4 3E-07 6.6E-12 59.4 3.6 26 6-31 3-28 (215)
396 TIGR00955 3a01204 The Eye Pigm 98.4 2.7E-07 5.9E-12 67.9 3.6 27 5-31 50-76 (617)
397 TIGR00150 HI0065_YjeE ATPase, 98.4 9.4E-07 2E-11 53.7 5.4 27 5-31 21-47 (133)
398 COG4674 Uncharacterized ABC-ty 98.4 6.9E-08 1.5E-12 62.5 0.5 29 5-33 30-58 (249)
399 cd03280 ABC_MutS2 MutS2 homolo 98.4 3.2E-07 7E-12 58.7 3.5 21 7-27 29-49 (200)
400 PLN03232 ABC transporter C fam 98.4 8.2E-07 1.8E-11 70.7 6.3 28 5-32 642-669 (1495)
401 TIGR01313 therm_gnt_kin carboh 98.4 2.6E-07 5.5E-12 57.1 2.8 23 9-31 1-23 (163)
402 PRK05057 aroK shikimate kinase 98.4 4.6E-07 1E-11 56.9 3.9 26 6-31 4-29 (172)
403 COG4167 SapF ABC-type antimicr 98.4 4.5E-07 9.7E-12 58.5 3.9 28 5-32 38-65 (267)
404 PRK06761 hypothetical protein; 98.4 7.7E-07 1.7E-11 60.2 5.2 26 6-31 3-28 (282)
405 PRK06995 flhF flagellar biosyn 98.4 2.8E-07 6.1E-12 66.2 3.1 26 5-30 255-280 (484)
406 COG4181 Predicted ABC-type tra 98.4 3.8E-07 8.2E-12 58.2 3.3 28 5-32 35-62 (228)
407 PF01583 APS_kinase: Adenylyls 98.4 4.4E-07 9.5E-12 56.5 3.6 27 5-31 1-27 (156)
408 PF01926 MMR_HSR1: 50S ribosom 98.4 6.6E-07 1.4E-11 52.3 4.2 21 9-29 2-22 (116)
409 COG0529 CysC Adenylylsulfate k 98.4 1.7E-06 3.7E-11 55.0 6.2 27 5-31 22-48 (197)
410 PRK00889 adenylylsulfate kinas 98.4 3.8E-07 8.3E-12 57.1 3.3 27 5-31 3-29 (175)
411 PRK12288 GTPase RsgA; Reviewed 98.4 7.9E-07 1.7E-11 61.6 5.1 26 6-31 205-230 (347)
412 TIGR01846 type_I_sec_HlyB type 98.4 4.5E-07 9.7E-12 67.4 4.1 28 5-32 482-509 (694)
413 PRK03846 adenylylsulfate kinas 98.4 4.8E-07 1E-11 57.9 3.7 28 4-31 22-49 (198)
414 TIGR03238 dnd_assoc_3 dnd syst 98.4 3.2E-07 6.8E-12 65.8 3.0 20 5-24 31-50 (504)
415 TIGR00157 ribosome small subun 98.4 2E-06 4.4E-11 56.9 6.6 27 5-31 119-145 (245)
416 PTZ00265 multidrug resistance 98.3 4.5E-07 9.8E-12 72.1 4.0 28 5-32 410-437 (1466)
417 COG4778 PhnL ABC-type phosphon 98.3 5.2E-07 1.1E-11 57.5 3.5 27 5-31 36-62 (235)
418 cd02026 PRK Phosphoribulokinas 98.3 3.8E-07 8.3E-12 61.3 3.1 24 8-31 1-24 (273)
419 TIGR01257 rim_protein retinal- 98.3 4.5E-07 9.8E-12 74.0 4.0 28 5-32 1964-1991(2272)
420 PLN03140 ABC transporter G fam 98.3 3.9E-07 8.5E-12 72.4 3.6 27 5-31 190-216 (1470)
421 PRK06217 hypothetical protein; 98.3 4.6E-07 9.9E-12 57.3 3.3 24 8-31 3-26 (183)
422 COG0444 DppD ABC-type dipeptid 98.3 5.4E-07 1.2E-11 61.5 3.8 27 5-31 30-56 (316)
423 PRK14721 flhF flagellar biosyn 98.3 5.3E-07 1.2E-11 63.9 3.8 26 5-30 190-215 (420)
424 PLN03130 ABC transporter C fam 98.3 1.3E-06 2.8E-11 70.1 6.2 28 5-32 642-669 (1622)
425 TIGR00956 3a01205 Pleiotropic 98.3 5E-07 1.1E-11 71.6 3.7 27 5-31 788-814 (1394)
426 PRK10416 signal recognition pa 98.3 6E-07 1.3E-11 61.6 3.6 27 5-31 113-139 (318)
427 PF13238 AAA_18: AAA domain; P 98.3 6.2E-07 1.4E-11 52.7 3.1 22 9-30 1-22 (129)
428 TIGR00017 cmk cytidylate kinas 98.3 7.5E-07 1.6E-11 58.1 3.7 24 8-31 4-27 (217)
429 cd03240 ABC_Rad50 The catalyti 98.3 6.8E-07 1.5E-11 57.6 3.4 20 8-27 24-43 (204)
430 cd03275 ABC_SMC1_euk Eukaryoti 98.3 7.4E-07 1.6E-11 58.8 3.6 25 7-31 23-47 (247)
431 TIGR01187 potA spermidine/putr 98.3 4.5E-07 9.7E-12 62.2 2.7 22 11-32 1-22 (325)
432 TIGR00956 3a01205 Pleiotropic 98.3 5.6E-07 1.2E-11 71.3 3.5 26 5-30 86-111 (1394)
433 PRK06696 uridine kinase; Valid 98.3 6.3E-07 1.4E-11 58.3 3.2 27 5-31 21-47 (223)
434 PRK00698 tmk thymidylate kinas 98.3 6.9E-07 1.5E-11 56.8 3.2 27 5-31 2-28 (205)
435 PRK10535 macrolide transporter 98.3 7.3E-07 1.6E-11 66.0 3.8 28 5-32 33-60 (648)
436 TIGR01257 rim_protein retinal- 98.3 6.5E-07 1.4E-11 73.1 3.7 28 5-32 955-982 (2272)
437 PRK03839 putative kinase; Prov 98.3 7.5E-07 1.6E-11 56.0 3.3 24 8-31 2-25 (180)
438 PLN03140 ABC transporter G fam 98.3 6.5E-07 1.4E-11 71.2 3.6 27 5-31 905-931 (1470)
439 PF10662 PduV-EutP: Ethanolami 98.3 6.9E-07 1.5E-11 54.9 3.0 24 7-30 2-25 (143)
440 PRK06547 hypothetical protein; 98.3 1.2E-06 2.5E-11 55.3 4.0 26 6-31 15-40 (172)
441 cd04155 Arl3 Arl3 subfamily. 98.3 9.5E-07 2.1E-11 54.5 3.6 25 6-30 14-38 (173)
442 cd02021 GntK Gluconate kinase 98.3 7.5E-07 1.6E-11 54.3 3.0 24 8-31 1-24 (150)
443 TIGR01359 UMP_CMP_kin_fam UMP- 98.3 7.1E-07 1.5E-11 56.0 3.0 24 8-31 1-24 (183)
444 cd01672 TMPK Thymidine monopho 98.3 7.5E-07 1.6E-11 56.0 3.0 25 7-31 1-25 (200)
445 PF07931 CPT: Chloramphenicol 98.3 1.5E-06 3.2E-11 55.1 4.3 28 6-33 1-28 (174)
446 PF00448 SRP54: SRP54-type pro 98.3 7.3E-07 1.6E-11 57.3 2.9 26 6-31 1-26 (196)
447 PRK14722 flhF flagellar biosyn 98.3 7.9E-07 1.7E-11 62.2 3.2 26 5-30 136-161 (374)
448 COG4987 CydC ABC-type transpor 98.3 9.9E-07 2.1E-11 63.8 3.8 28 5-32 363-390 (573)
449 PLN02796 D-glycerate 3-kinase 98.3 8.8E-07 1.9E-11 61.3 3.4 25 7-31 101-125 (347)
450 PRK13949 shikimate kinase; Pro 98.3 1E-06 2.2E-11 55.3 3.5 24 8-31 3-26 (169)
451 COG4175 ProV ABC-type proline/ 98.3 1.2E-06 2.6E-11 60.2 3.9 28 5-32 53-80 (386)
452 PTZ00243 ABC transporter; Prov 98.3 2E-06 4.3E-11 68.9 5.7 28 5-32 1335-1362(1560)
453 TIGR02524 dot_icm_DotB Dot/Icm 98.3 9.5E-07 2E-11 61.5 3.5 26 5-30 133-158 (358)
454 PRK12289 GTPase RsgA; Reviewed 98.3 1.7E-06 3.7E-11 60.1 4.7 27 5-31 171-197 (352)
455 PRK13975 thymidylate kinase; P 98.2 1.2E-06 2.6E-11 55.5 3.6 26 6-31 2-27 (196)
456 COG4161 ArtP ABC-type arginine 98.2 1.1E-06 2.4E-11 55.7 3.3 23 5-27 27-49 (242)
457 TIGR00041 DTMP_kinase thymidyl 98.2 1.1E-06 2.4E-11 55.6 3.4 26 6-31 3-28 (195)
458 TIGR03499 FlhF flagellar biosy 98.2 1E-06 2.2E-11 59.5 3.2 27 5-31 193-219 (282)
459 cd02020 CMPK Cytidine monophos 98.2 1E-06 2.2E-11 53.1 2.9 24 8-31 1-24 (147)
460 PF00004 AAA: ATPase family as 98.2 1.4E-06 2.9E-11 51.5 3.4 23 9-31 1-23 (132)
461 cd04159 Arl10_like Arl10-like 98.2 9.4E-07 2E-11 53.1 2.8 21 9-29 2-22 (159)
462 PLN02200 adenylate kinase fami 98.2 1.6E-06 3.6E-11 57.0 4.1 26 6-31 43-68 (234)
463 PRK13851 type IV secretion sys 98.2 6.5E-06 1.4E-10 57.1 7.0 28 5-32 161-188 (344)
464 PF13476 AAA_23: AAA domain; P 98.2 1.4E-06 3E-11 54.8 3.4 25 6-30 19-43 (202)
465 PLN03232 ABC transporter C fam 98.2 1.2E-06 2.7E-11 69.8 3.8 28 5-32 1261-1288(1495)
466 cd03227 ABC_Class2 ABC-type Cl 98.2 1.5E-06 3.2E-11 54.1 3.5 24 5-28 20-43 (162)
467 COG1137 YhbG ABC-type (unclass 98.2 9.4E-08 2E-12 62.0 -2.0 28 5-32 29-56 (243)
468 PHA02530 pseT polynucleotide k 98.2 1.4E-06 3.1E-11 58.5 3.5 25 7-31 3-27 (300)
469 PF08477 Miro: Miro-like prote 98.2 1.6E-06 3.4E-11 50.6 3.3 23 9-31 2-24 (119)
470 TIGR00455 apsK adenylylsulfate 98.2 1.5E-06 3.2E-11 54.9 3.3 27 5-31 17-43 (184)
471 TIGR01271 CFTR_protein cystic 98.2 1.4E-06 3.1E-11 69.4 3.8 28 5-32 451-478 (1490)
472 cd02024 NRK1 Nicotinamide ribo 98.2 1.3E-06 2.8E-11 55.8 3.0 24 8-31 1-24 (187)
473 KOG0059|consensus 98.2 2.4E-06 5.2E-11 65.3 4.9 28 5-32 590-617 (885)
474 PLN02318 phosphoribulokinase/u 98.2 1.4E-06 3E-11 64.1 3.5 25 7-31 66-90 (656)
475 cd03281 ABC_MSH5_euk MutS5 hom 98.2 1.5E-06 3.4E-11 56.4 3.4 22 6-27 29-50 (213)
476 smart00763 AAA_PrkA PrkA AAA d 98.2 1.6E-06 3.4E-11 60.4 3.4 27 5-31 77-103 (361)
477 cd03271 ABC_UvrA_II The excisi 98.2 1.7E-06 3.8E-11 57.9 3.5 22 5-26 20-41 (261)
478 cd00009 AAA The AAA+ (ATPases 98.2 2.2E-06 4.8E-11 50.5 3.6 26 5-30 18-43 (151)
479 TIGR00957 MRP_assoc_pro multi 98.2 1.7E-06 3.7E-11 69.1 3.8 28 5-32 663-690 (1522)
480 TIGR01420 pilT_fam pilus retra 98.2 8.6E-06 1.9E-10 56.3 6.8 26 6-31 122-147 (343)
481 TIGR01663 PNK-3'Pase polynucle 98.2 4.7E-06 1E-10 60.6 5.7 26 5-30 368-393 (526)
482 cd00464 SK Shikimate kinase (S 98.2 1.7E-06 3.8E-11 52.6 3.0 23 9-31 2-24 (154)
483 PRK13900 type IV secretion sys 98.2 1.3E-05 2.8E-10 55.3 7.6 27 6-32 160-186 (332)
484 PLN03130 ABC transporter C fam 98.2 1.9E-06 4.1E-11 69.2 3.9 28 5-32 1264-1291(1622)
485 KOG0062|consensus 98.2 1.2E-06 2.7E-11 63.1 2.5 24 5-28 105-128 (582)
486 TIGR00101 ureG urease accessor 98.2 2.4E-06 5.2E-11 55.0 3.7 25 8-32 3-27 (199)
487 cd03282 ABC_MSH4_euk MutS4 hom 98.2 2.3E-06 5.1E-11 55.3 3.6 24 5-28 28-51 (204)
488 cd02028 UMPK_like Uridine mono 98.2 1.5E-06 3.2E-11 55.0 2.6 24 8-31 1-24 (179)
489 PRK14531 adenylate kinase; Pro 98.2 2.5E-06 5.4E-11 53.9 3.6 24 8-31 4-27 (183)
490 PRK07429 phosphoribulokinase; 98.2 2.1E-06 4.5E-11 59.2 3.4 26 6-31 8-33 (327)
491 PTZ00243 ABC transporter; Prov 98.1 2.1E-06 4.5E-11 68.7 3.8 28 5-32 685-712 (1560)
492 PRK13948 shikimate kinase; Pro 98.1 3.2E-06 6.9E-11 53.8 4.0 26 6-31 10-35 (182)
493 PRK14723 flhF flagellar biosyn 98.1 1.9E-06 4.1E-11 64.8 3.3 26 5-30 184-209 (767)
494 TIGR03574 selen_PSTK L-seryl-t 98.1 3E-06 6.5E-11 55.9 3.9 24 8-31 1-24 (249)
495 PRK13946 shikimate kinase; Pro 98.1 2.9E-06 6.4E-11 53.7 3.8 29 3-31 7-35 (184)
496 TIGR03015 pepcterm_ATPase puta 98.1 2.9E-06 6.3E-11 56.0 3.9 25 7-31 44-68 (269)
497 COG4615 PvdE ABC-type sideroph 98.1 2.8E-06 6.1E-11 60.1 3.9 28 5-32 348-375 (546)
498 PTZ00088 adenylate kinase 1; P 98.1 3.4E-06 7.3E-11 55.5 4.0 24 8-31 8-31 (229)
499 PRK10463 hydrogenase nickel in 98.1 3.3E-06 7.2E-11 57.3 4.0 28 5-32 103-130 (290)
500 PRK14532 adenylate kinase; Pro 98.1 2.5E-06 5.4E-11 53.9 3.2 23 9-31 3-25 (188)
No 1
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.92 E-value=2.7e-25 Score=140.27 Aligned_cols=80 Identities=29% Similarity=0.348 Sum_probs=76.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------cccccc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NVGLAG 68 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~~~yg 68 (91)
+|.+++|.||||+|||||+++|.... .+...||+|||+||.+|.+|++|+|++.++ .+++||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 69999999999999999999999988 588999999999999999999999999888 789999
Q ss_pred cCHHHHHHHHHhCCCeEe
Q psy4405 69 TYIPMYHSEIRAYPPVEI 86 (91)
Q Consensus 69 ~~~~~i~~~~~~g~~~~~ 86 (91)
++...+++.+++|++|++
T Consensus 81 T~~~~ve~~~~~G~~vil 98 (191)
T COG0194 81 TSREPVEQALAEGKDVIL 98 (191)
T ss_pred CcHHHHHHHHhcCCeEEE
Confidence 999999999999999987
No 2
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.90 E-value=6.9e-24 Score=134.94 Aligned_cols=82 Identities=23% Similarity=0.351 Sum_probs=75.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------cccccc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NVGLAG 68 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~~~yg 68 (91)
.+++++|+||||||||||++.|...++. +...+++|||+++.+|.+|.+|+|++.++ .+++||
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 5789999999999999999999998874 56788999999999999999999999877 789999
Q ss_pred cCHHHHHHHHHhCCCeEec
Q psy4405 69 TYIPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 69 ~~~~~i~~~~~~g~~~~~~ 87 (91)
++.+++++++++|+.|++.
T Consensus 82 t~~~~i~~~~~~g~~~i~d 100 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMD 100 (186)
T ss_pred CcHHHHHHHHHcCCeEEEE
Confidence 9999999999999999874
No 3
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.89 E-value=3.2e-23 Score=131.10 Aligned_cols=83 Identities=36% Similarity=0.503 Sum_probs=73.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------cccccc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NVGLAG 68 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~~~yg 68 (91)
++++++|+||||||||||+++|...+|..|...+++|||+++.+|.+|.+|+|++.++ .+++||
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 4789999999999999999999999988888999999999999999999999999877 578999
Q ss_pred cCHHHHHHHHHhCCCeEec
Q psy4405 69 TYIPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 69 ~~~~~i~~~~~~g~~~~~~ 87 (91)
++.+++++++++|+.+++-
T Consensus 81 t~~~~i~~~~~~gk~~il~ 99 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILD 99 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEE
T ss_pred hccchhhHhhhcCCcEEEE
Confidence 9999999999999998874
No 4
>PLN02772 guanylate kinase
Probab=99.87 E-value=7.1e-22 Score=136.75 Aligned_cols=85 Identities=32% Similarity=0.410 Sum_probs=77.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------cccc
Q psy4405 3 PLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NVGL 66 (91)
Q Consensus 3 ~~~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~~~ 66 (91)
+...++++|+|||||||+||+++|...++..+.+.++||||+++.+|.++.+|+|++.++ .+++
T Consensus 132 ~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~ 211 (398)
T PLN02772 132 GNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNL 211 (398)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcc
Confidence 346789999999999999999999998876688899999999999999999999999665 7899
Q ss_pred cccCHHHHHHHHHhCCCeEec
Q psy4405 67 AGTYIPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 67 yg~~~~~i~~~~~~g~~~~~~ 87 (91)
||++.+.+++++++|+.|++.
T Consensus 212 YGTsk~~V~~vl~~Gk~vILd 232 (398)
T PLN02772 212 YGTSIEAVEVVTDSGKRCILD 232 (398)
T ss_pred ccccHHHHHHHHHhCCcEEEe
Confidence 999999999999999999864
No 5
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.86 E-value=1.6e-21 Score=123.50 Aligned_cols=83 Identities=36% Similarity=0.453 Sum_probs=76.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------cccccc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NVGLAG 68 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~~~yg 68 (91)
.+++++|+|||||||+||++.|...+|..|...+++|||+++.++.++.+|+|++.++ .+++||
T Consensus 1 ~~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG 80 (184)
T smart00072 1 DRRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG 80 (184)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence 3689999999999999999999999876789999999999999999999999999776 578999
Q ss_pred cCHHHHHHHHHhCCCeEec
Q psy4405 69 TYIPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 69 ~~~~~i~~~~~~g~~~~~~ 87 (91)
++.+.+++++++|+.|++-
T Consensus 81 t~~~~i~~~~~~~~~~ild 99 (184)
T smart00072 81 TSKETIRQVAEQGKHCLLD 99 (184)
T ss_pred cCHHHHHHHHHcCCeEEEE
Confidence 9999999999999998874
No 6
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.84 E-value=1e-20 Score=121.92 Aligned_cols=84 Identities=26% Similarity=0.333 Sum_probs=75.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------cccc
Q psy4405 3 PLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NVGL 66 (91)
Q Consensus 3 ~~~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~~~ 66 (91)
+.++++++|+||||||||||++.|....+ .+.+.++++||.++.++.++.+|+|++.++ .+++
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 34788999999999999999999987665 577899999999999999999999998766 7889
Q ss_pred cccCHHHHHHHHHhCCCeEec
Q psy4405 67 AGTYIPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 67 yg~~~~~i~~~~~~g~~~~~~ 87 (91)
||++.+.+++.+++|+.|++.
T Consensus 89 YGt~~~~i~~~~~~g~~vi~~ 109 (206)
T PRK14738 89 YGVPKAPVRQALASGRDVIVK 109 (206)
T ss_pred ecCCHHHHHHHHHcCCcEEEE
Confidence 999999999999999998873
No 7
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.82 E-value=6.2e-20 Score=111.77 Aligned_cols=80 Identities=30% Similarity=0.350 Sum_probs=72.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------cccccccCH
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NVGLAGTYI 71 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~~~yg~~~ 71 (91)
+++|+||||||||||++.|.+.++..+...++++||+++.++.++.+|+|++.++ .+++||++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 4789999999999999999999876678889999999999999999999999655 578999999
Q ss_pred HHHHHHHHhCCCeEec
Q psy4405 72 PMYHSEIRAYPPVEIP 87 (91)
Q Consensus 72 ~~i~~~~~~g~~~~~~ 87 (91)
+.+++++++|+.|++.
T Consensus 81 ~~i~~~~~~g~~~il~ 96 (137)
T cd00071 81 AAVEEALAEGKIVILE 96 (137)
T ss_pred HHHHHHHhCCCeEEEE
Confidence 9999999999999874
No 8
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.77 E-value=1.4e-18 Score=111.13 Aligned_cols=81 Identities=28% Similarity=0.359 Sum_probs=72.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------cccccc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NVGLAG 68 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~~~yg 68 (91)
+|++++|+||||||||||++.|.+.++ .+...++++||+|+.++.++.+++|++.++ .+++||
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence 599999999999999999999999987 577788899999999999999999987554 567899
Q ss_pred cCHHHHHHHHHhCCCeEe
Q psy4405 69 TYIPMYHSEIRAYPPVEI 86 (91)
Q Consensus 69 ~~~~~i~~~~~~g~~~~~ 86 (91)
.+...+++.+++|+.|++
T Consensus 83 ~~~~~i~~~l~~g~~vi~ 100 (205)
T PRK00300 83 TPRSPVEEALAAGKDVLL 100 (205)
T ss_pred CcHHHHHHHHHcCCeEEE
Confidence 999999999999998876
No 9
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.77 E-value=2.2e-18 Score=108.20 Aligned_cols=80 Identities=30% Similarity=0.377 Sum_probs=70.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------ccccccc
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NVGLAGT 69 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~~~yg~ 69 (91)
|++++|+||||||||||++.|.+.++. +...++++||+++.++..+.+|+|++.++ .+++||.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT 79 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence 689999999999999999999998874 55677889999999888999999988544 5678999
Q ss_pred CHHHHHHHHHhCCCeEe
Q psy4405 70 YIPMYHSEIRAYPPVEI 86 (91)
Q Consensus 70 ~~~~i~~~~~~g~~~~~ 86 (91)
+.+.+++++++|+.|++
T Consensus 80 ~~~~i~~~~~~g~~vi~ 96 (180)
T TIGR03263 80 PKSPVEEALAAGKDVLL 96 (180)
T ss_pred cHHHHHHHHHCCCeEEE
Confidence 99999999999999887
No 10
>KOG0707|consensus
Probab=99.73 E-value=1.4e-17 Score=108.03 Aligned_cols=86 Identities=30% Similarity=0.334 Sum_probs=78.9
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------cc
Q psy4405 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NV 64 (91)
Q Consensus 1 m~~~~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~ 64 (91)
+|+...+.++|.||+|+||+||+++|.+.++..+++.++++||.++.++.++.+|+|++..+ .+
T Consensus 32 ~~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~g 111 (231)
T KOG0707|consen 32 TPPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSG 111 (231)
T ss_pred cCCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhc
Confidence 45556689999999999999999999999998899999999999999999999999999777 78
Q ss_pred cccccCHHHHHHHHHhCCCeEe
Q psy4405 65 GLAGTYIPMYHSEIRAYPPVEI 86 (91)
Q Consensus 65 ~~yg~~~~~i~~~~~~g~~~~~ 86 (91)
++||++.++++++...|+.+++
T Consensus 112 n~yGtsi~av~~~~~~gk~~il 133 (231)
T KOG0707|consen 112 NKYGTSIAAVQRLMLSGKVCIL 133 (231)
T ss_pred ccCCchHHHHHHHHhcCCccee
Confidence 9999999999999999998765
No 11
>KOG0609|consensus
Probab=99.72 E-value=2.2e-17 Score=116.77 Aligned_cols=87 Identities=40% Similarity=0.672 Sum_probs=82.2
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------cc
Q psy4405 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NV 64 (91)
Q Consensus 1 m~~~~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~ 64 (91)
||+++.+.++|+|++|+|...|-++|....|..|+..|.||||+++.+|.+|++|+|++.++ .+
T Consensus 335 ~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~ 414 (542)
T KOG0609|consen 335 YPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEG 414 (542)
T ss_pred hcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchh
Confidence 56778899999999999999999999999999999999999999999999999999999887 67
Q ss_pred cccccCHHHHHHHHHhCCCeEec
Q psy4405 65 GLAGTYIPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 65 ~~yg~~~~~i~~~~~~g~~~~~~ 87 (91)
++||++.++++.++++||+|++-
T Consensus 415 nlYGTs~dsVr~v~~~gKicvLd 437 (542)
T KOG0609|consen 415 NLYGTSLDSVRNVIASGKICVLD 437 (542)
T ss_pred ccccchHHHHHHHHHhCCEEEEe
Confidence 89999999999999999999984
No 12
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.57 E-value=6.1e-15 Score=93.51 Aligned_cols=78 Identities=26% Similarity=0.178 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCccc----------------cccccc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV----------------NVGLAG 68 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~~~yg 68 (91)
.|++++|+||||||||||+++|.+.....+......+++..+.. ..++.++..++ .+++||
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg 77 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYG 77 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence 37899999999999999999999887533433344445543322 22333333332 689999
Q ss_pred cCHHHHHHHHHhCCCeEe
Q psy4405 69 TYIPMYHSEIRAYPPVEI 86 (91)
Q Consensus 69 ~~~~~i~~~~~~g~~~~~ 86 (91)
++. .+++.++.|+.+++
T Consensus 78 ~~~-~~~~~l~~g~~VI~ 94 (186)
T PRK10078 78 VGI-EIDLWLHAGFDVLV 94 (186)
T ss_pred CcH-HHHHHHhCCCEEEE
Confidence 999 59999999988765
No 13
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.49 E-value=1.1e-13 Score=94.10 Aligned_cols=82 Identities=13% Similarity=0.039 Sum_probs=67.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcC--------ccccccccCCCCccchhcCCceEeeCccc------cccccccC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEK--------FAAVIPYTTRPMRELEENGQNYWFTSREV------NVGLAGTY 70 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~--------~~~~v~~~tr~~~~~~~~~~~~~~~~~~~------~~~~yg~~ 70 (91)
+.++++|+||+|||||||+..|++.+... +-..++++|++++..|..+.+|||++..+ .+.+....
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a 82 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA 82 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence 35799999999999999999999987531 33456788999999999999999999666 44455555
Q ss_pred HHHHHHHHHhCCCeEe
Q psy4405 71 IPMYHSEIRAYPPVEI 86 (91)
Q Consensus 71 ~~~i~~~~~~g~~~~~ 86 (91)
.+.+++++++|+.++|
T Consensus 83 ~~~i~~i~~~gk~pIl 98 (307)
T PRK00091 83 LAAIADILARGKLPIL 98 (307)
T ss_pred HHHHHHHHhCCCCEEE
Confidence 7788889999999887
No 14
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.45 E-value=3.4e-13 Score=84.68 Aligned_cols=78 Identities=23% Similarity=0.120 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCCcC--ccccccccCCCCccchhcCCceEeeCccc----------------ccccc
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNPEK--FAAVIPYTTRPMRELEENGQNYWFTSREV----------------NVGLA 67 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~~~--~~~~v~~~tr~~~~~~~~~~~~~~~~~~~----------------~~~~y 67 (91)
|++++|+||||||||||+++|+..++.. ..+..++++|+.. ..+.++++.+.++ .+.+|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence 5689999999999999999999887532 2344567777643 3455566555443 44578
Q ss_pred ccCHHHHHHHHHhCCCeEec
Q psy4405 68 GTYIPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 68 g~~~~~i~~~~~~g~~~~~~ 87 (91)
|.+. .+.+.+++|+.+++.
T Consensus 78 g~~~-~i~~~~~~g~~vv~~ 96 (179)
T TIGR02322 78 GIPA-EIDQWLEAGDVVVVN 96 (179)
T ss_pred cChH-HHHHHHhcCCEEEEE
Confidence 8886 578888888877663
No 15
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=99.39 E-value=7.7e-13 Score=89.14 Aligned_cols=80 Identities=11% Similarity=-0.001 Sum_probs=66.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCCcC--------ccccccccCCCCccchhcCCceEeeCccc------cccccccCHHH
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNPEK--------FAAVIPYTTRPMRELEENGQNYWFTSREV------NVGLAGTYIPM 73 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~~~--------~~~~v~~~tr~~~~~~~~~~~~~~~~~~~------~~~~yg~~~~~ 73 (91)
+++|+||+|||||+|+..|+..+... .-...+.+|++|+..+..+.+||+++..+ .+++++...+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~ 80 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNA 80 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHH
Confidence 47899999999999999999987521 12234577999999999999999999666 47788889999
Q ss_pred HHHHHHhCCCeEec
Q psy4405 74 YHSEIRAYPPVEIP 87 (91)
Q Consensus 74 i~~~~~~g~~~~~~ 87 (91)
++++.++|+.+++-
T Consensus 81 i~~~~~~g~~pi~v 94 (287)
T TIGR00174 81 IADITARGKIPLLV 94 (287)
T ss_pred HHHHHhCCCCEEEE
Confidence 99999999998873
No 16
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.33 E-value=6.4e-12 Score=78.45 Aligned_cols=82 Identities=23% Similarity=0.139 Sum_probs=59.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcC--ccccccccCCCCccchhc-------------CCceEeeCcccccccccc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEK--FAAVIPYTTRPMRELEEN-------------GQNYWFTSREVNVGLAGT 69 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~--~~~~v~~~tr~~~~~~~~-------------~~~~~~~~~~~~~~~yg~ 69 (91)
+|++|.++|||||||.||+......++.. +.+...+.||+...+-++ +..-.-++++..+..||+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 68999999999999999999888887643 556666778876544211 111222233337889999
Q ss_pred CHHHHHHHHHhCCCeEec
Q psy4405 70 YIPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 70 ~~~~i~~~~~~g~~~~~~ 87 (91)
+. +|++++++|.+|++.
T Consensus 84 p~-eId~wl~~G~vvl~N 100 (192)
T COG3709 84 PA-EIDLWLAAGDVVLVN 100 (192)
T ss_pred ch-hHHHHHhCCCEEEEe
Confidence 87 589999999988875
No 17
>PLN02840 tRNA dimethylallyltransferase
Probab=99.32 E-value=5.5e-12 Score=88.63 Aligned_cols=82 Identities=11% Similarity=-0.018 Sum_probs=66.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcC--------ccccccccCCCCccchhcCCceEeeCccc------cccccccC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEK--------FAAVIPYTTRPMRELEENGQNYWFTSREV------NVGLAGTY 70 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~--------~~~~v~~~tr~~~~~~~~~~~~~~~~~~~------~~~~yg~~ 70 (91)
++.+++|+||+|||||||+..|+..+... +-..+...|++|...|..+..||+++.-+ .+.++...
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~A 99 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDDA 99 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHHH
Confidence 56789999999999999999999998531 11234456899988899999999998555 56677777
Q ss_pred HHHHHHHHHhCCCeEe
Q psy4405 71 IPMYHSEIRAYPPVEI 86 (91)
Q Consensus 71 ~~~i~~~~~~g~~~~~ 86 (91)
...+++++++|+.++|
T Consensus 100 ~~~I~~i~~rgkiPIv 115 (421)
T PLN02840 100 RRATQDILNRGRVPIV 115 (421)
T ss_pred HHHHHHHHhcCCCEEE
Confidence 8899999999999887
No 18
>PLN02748 tRNA dimethylallyltransferase
Probab=99.22 E-value=3.4e-11 Score=85.70 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=63.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcC--------ccccccccCCCCccchhcCCceEeeCccc------cccccccC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEK--------FAAVIPYTTRPMRELEENGQNYWFTSREV------NVGLAGTY 70 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~--------~~~~v~~~tr~~~~~~~~~~~~~~~~~~~------~~~~yg~~ 70 (91)
++++++|+||+|||||+|+..|+..+... .-......|.++...|..+..||+++.-+ .+.|....
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A 100 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHA 100 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHH
Confidence 56799999999999999999999987520 11122344788888888999999888555 44555666
Q ss_pred HHHHHHHHHhCCCeEec
Q psy4405 71 IPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 71 ~~~i~~~~~~g~~~~~~ 87 (91)
...|+++..+|+.+||-
T Consensus 101 ~~~I~~I~~rgk~PIlV 117 (468)
T PLN02748 101 VPLIEEILSRNGLPVIV 117 (468)
T ss_pred HHHHHHHHhcCCCeEEE
Confidence 77899999999998873
No 19
>PLN02165 adenylate isopentenyltransferase
Probab=99.12 E-value=1.4e-10 Score=79.54 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=56.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcC-cc-------ccccccCCCCccchhcCCceEeeCccc-------ccccccc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEK-FA-------AVIPYTTRPMRELEENGQNYWFTSREV-------NVGLAGT 69 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~-~~-------~~v~~~tr~~~~~~~~~~~~~~~~~~~-------~~~~yg~ 69 (91)
+|++++|+||+|||||||+..|++.+... .. ......|.++...+..+..||+++.-. ...+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~~ 121 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRSL 121 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHHH
Confidence 67899999999999999999999987521 00 112233566666667777766665333 1333334
Q ss_pred CHHHHHHHHHhCCCeEec
Q psy4405 70 YIPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 70 ~~~~i~~~~~~g~~~~~~ 87 (91)
....++++...|+.+++.
T Consensus 122 a~~~I~~i~~~~~~PI~v 139 (334)
T PLN02165 122 ASLSISEITSRQKLPIVA 139 (334)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 456778888999998874
No 20
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.2e-10 Score=76.79 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTT 42 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~t 42 (91)
+|++++|+||||||||||++.|+++..+ ....+....
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p-~~G~V~~~g 64 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKP-TSGEVLLDG 64 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECC
Confidence 6999999999999999999999999864 334444443
No 21
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.10 E-value=1.9e-10 Score=77.80 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++...+
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 5899999999999999999999999964
No 22
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=99.09 E-value=2.9e-10 Score=77.13 Aligned_cols=78 Identities=6% Similarity=-0.047 Sum_probs=61.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCCcCcccccc-----------ccCCCCccchhcCCceEeeCccc------cccccc
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNPEKFAAVIP-----------YTTRPMRELEENGQNYWFTSREV------NVGLAG 68 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~-----------~~tr~~~~~~~~~~~~~~~~~~~------~~~~yg 68 (91)
+++++|+||+|||||.|+-.|++... ..|+ ..|.+|...|..+..||+++.-+ .+.+..
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~~----eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~ 79 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGKA----EIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYK 79 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC----cEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHH
Confidence 56999999999999999999998842 2233 34888888888999999998555 445556
Q ss_pred cCHHHHHHHHHhCCCeEec
Q psy4405 69 TYIPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 69 ~~~~~i~~~~~~g~~~~~~ 87 (91)
...+.++++...|+.++|.
T Consensus 80 ~a~~~i~~i~~~gk~Pilv 98 (300)
T PRK14729 80 EALKIIKELRQQKKIPIFV 98 (300)
T ss_pred HHHHHHHHHHHCCCCEEEE
Confidence 6677888999999998874
No 23
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.08 E-value=2.9e-10 Score=78.11 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|+++..+
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 24
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.07 E-value=1.7e-10 Score=76.81 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 5999999999999999999999998874
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.06 E-value=6.3e-10 Score=73.87 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+.+
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p 56 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKP 56 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 6899999999999999999999998864
No 26
>PRK00098 GTPase RsgA; Reviewed
Probab=99.05 E-value=3.5e-10 Score=76.60 Aligned_cols=79 Identities=20% Similarity=0.070 Sum_probs=52.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHhhCCcCcccccc-------ccCCCCccchhc------------CCceEeeCccc--
Q psy4405 4 LKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIP-------YTTRPMRELEEN------------GQNYWFTSREV-- 62 (91)
Q Consensus 4 ~~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~-------~~tr~~~~~~~~------------~~~~~~~~~~~-- 62 (91)
..+++++|+|+||+|||||++.|.+..... ...++ |||+..+..+.. ..++++++.++
T Consensus 162 l~gk~~~~~G~sgvGKStlin~l~~~~~~~-~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 240 (298)
T PRK00098 162 LAGKVTVLAGQSGVGKSTLLNALAPDLELK-TGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELE 240 (298)
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcCCC-CcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHH
Confidence 368899999999999999999999876532 22333 566654432222 12233334333
Q ss_pred ----------------cccccccCHHHHHHHHHhCCC
Q psy4405 63 ----------------NVGLAGTYIPMYHSEIRAYPP 83 (91)
Q Consensus 63 ----------------~~~~yg~~~~~i~~~~~~g~~ 83 (91)
...+|+.+...+.+.+++|+.
T Consensus 241 ~~f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i 277 (298)
T PRK00098 241 HYFPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEI 277 (298)
T ss_pred HHHHHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCC
Confidence 335778888899999998874
No 27
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.02 E-value=4.2e-10 Score=74.10 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCc-cchhcCCceEeeCccc---cccccccCHHHHHHHH
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMR-ELEENGQNYWFTSREV---NVGLAGTYIPMYHSEI 78 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~-~~~~~~~~~~~~~~~~---~~~~yg~~~~~i~~~~ 78 (91)
+|+.++|+|+||||||||++.|++.+++ ....+..+.+-.. ...--+.+....-.+. .+.++|...+.+++..
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~P-t~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~ 128 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIYKP-TSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKV 128 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCccCC-CCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHH
Confidence 7999999999999999999999999974 3333322221110 0011112222222222 5667787776666544
No 28
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.98 E-value=8.1e-10 Score=71.47 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 4 LKRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 4 ~~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.+|++++|+|||||||||++++|..++.+
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 37999999999999999999999999853
No 29
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.7e-09 Score=73.58 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=62.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCCcCc--------cccccccCCCCccchhcCCceEeeCccc------cccccccCH
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNPEKF--------AAVIPYTTRPMRELEENGQNYWFTSREV------NVGLAGTYI 71 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~~~~--------~~~v~~~tr~~~~~~~~~~~~~~~~~~~------~~~~yg~~~ 71 (91)
.++++|+||++||||.|+-.|++.+.... -.....-|.+|...|..+..||.++..+ ...++....
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a~ 82 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDAL 82 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHHH
Confidence 46899999999999999999999986310 0112233788888889999999998666 344555556
Q ss_pred HHHHHHHHhCCCeEe
Q psy4405 72 PMYHSEIRAYPPVEI 86 (91)
Q Consensus 72 ~~i~~~~~~g~~~~~ 86 (91)
..++++..+||.+++
T Consensus 83 ~~i~~i~~rgk~pIl 97 (308)
T COG0324 83 AAIDDILARGKLPIL 97 (308)
T ss_pred HHHHHHHhCCCCcEE
Confidence 789999999998876
No 30
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.97 E-value=6.4e-10 Score=76.81 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+++.|+|||||||||++++|+++..+
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 31
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.96 E-value=1e-09 Score=68.90 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCc-ccccccc--CCCCc-cchhcCCceEe----eCccccccccccCHHHHHH
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKF-AAVIPYT--TRPMR-ELEENGQNYWF----TSREVNVGLAGTYIPMYHS 76 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~-~~~v~~~--tr~~~-~~~~~~~~~~~----~~~~~~~~~yg~~~~~i~~ 76 (91)
+|++|+|.|++||||||+++.|....+..+ ...+..- +.... .....+.++.- ......++.|+.....+.+
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 80 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA 80 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence 478999999999999999999998875322 1111100 00000 00000111100 0001144688888888999
Q ss_pred HHHhCCCeEec
Q psy4405 77 EIRAYPPVEIP 87 (91)
Q Consensus 77 ~~~~g~~~~~~ 87 (91)
.+++|..|++-
T Consensus 81 ~l~~G~~VIvD 91 (175)
T cd00227 81 MARAGANVIAD 91 (175)
T ss_pred HHhCCCcEEEe
Confidence 99999998875
No 32
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.93 E-value=1.2e-09 Score=72.48 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++++|||||||||+.++|++.+++
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~ 54 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEP 54 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCc
Confidence 5999999999999999999999999973
No 33
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.93 E-value=9.1e-10 Score=71.68 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|..+-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 699999999999999999999988775
No 34
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.93 E-value=1.1e-09 Score=70.70 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999999999864
No 35
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.93 E-value=1e-09 Score=69.49 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 6899999999999999999999998863
No 36
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.92 E-value=3e-09 Score=72.28 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p 59 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHP 59 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999999999864
No 37
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.92 E-value=1.3e-09 Score=71.41 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|.+...+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 6999999999999999999999888854
No 38
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.92 E-value=3.5e-09 Score=69.78 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+|+||||||||++.|++...+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 6999999999999999999999999874
No 39
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.92 E-value=1.2e-09 Score=69.23 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998864
No 40
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.92 E-value=1.3e-09 Score=70.04 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=28.0
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 1 m~~~~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
|-+.+|.+++|+||||||||||++.|.+.++
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5566899999999999999999999998875
No 41
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=1.3e-09 Score=71.16 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 42
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.91 E-value=3.6e-09 Score=72.89 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~p 93 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTSP 93 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5999999999999999999999999864
No 43
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.91 E-value=1.3e-09 Score=69.95 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999863
No 44
>PRK08356 hypothetical protein; Provisional
Probab=98.91 E-value=4.3e-09 Score=67.17 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccchhcCCceEeeCc
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSR 60 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~~~~~~~~~~~~ 60 (91)
..+++|+||+||||||+++.|.. +. +. .++.+++.++..+..+.+|+|++.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g--~~-~is~~~~~~~~~~~~~~~~~f~~~ 55 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KG--FC-RVSCSDPLIDLLTHNVSDYSWVPE 55 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CC--Cc-EEeCCCcccccccccccccccccH
Confidence 45789999999999999999953 32 33 566666655555666777877654
No 45
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.91 E-value=1.4e-09 Score=70.15 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 46
>KOG0058|consensus
Probab=98.91 E-value=8.7e-10 Score=81.18 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=45.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCcc--chhcCCceEeeCccc--------cccccccCHHHH
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRE--LEENGQNYWFTSREV--------NVGLAGTYIPMY 74 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~--~~~~~~~~~~~~~~~--------~~~~yg~~~~~i 74 (91)
+|++++|+||||+||||+++.|.+.|.+ ....|..+..+.+. +.--.....++.++. ++..||....+-
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~P-tsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~ 571 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDP-TSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATD 571 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC-CCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCH
Confidence 4999999999999999999999999864 33434333322221 111123344555555 677888775444
Q ss_pred HHHH
Q psy4405 75 HSEI 78 (91)
Q Consensus 75 ~~~~ 78 (91)
+++.
T Consensus 572 e~i~ 575 (716)
T KOG0058|consen 572 EEIE 575 (716)
T ss_pred HHHH
Confidence 4443
No 47
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.90 E-value=1.6e-09 Score=69.43 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 48
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.90 E-value=1.7e-09 Score=69.64 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998863
No 49
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=1.8e-09 Score=69.85 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998763
No 50
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.89 E-value=2e-09 Score=69.56 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 51
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.89 E-value=1.8e-09 Score=69.70 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.88 E-value=3.2e-09 Score=68.24 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 53
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.88 E-value=2.1e-09 Score=69.66 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999864
No 54
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.88 E-value=1.9e-09 Score=69.24 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 55
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.88 E-value=1.9e-09 Score=69.71 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 6899999999999999999999998863
No 56
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.88 E-value=2e-09 Score=69.18 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 57
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.88 E-value=1.8e-09 Score=73.02 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p 45 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRP 45 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999864
No 58
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=1.9e-09 Score=69.18 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998863
No 59
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.88 E-value=1.6e-09 Score=70.66 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.|++.+|+||||||||||++.|++.+.
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccC
Confidence 599999999999999999999999885
No 60
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.88 E-value=1.9e-09 Score=70.29 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 52 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLRP 52 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999999999863
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=2.1e-09 Score=70.01 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999874
No 62
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.88 E-value=1.9e-09 Score=69.59 Aligned_cols=28 Identities=29% Similarity=0.531 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 63
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.87 E-value=2.1e-09 Score=69.16 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALTP 54 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 64
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.87 E-value=2.3e-09 Score=68.57 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 65
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=2.2e-09 Score=69.42 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999753
No 66
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.87 E-value=2.1e-09 Score=70.29 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999999999864
No 67
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.87 E-value=2e-09 Score=69.20 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 51 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999999999863
No 68
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=2.3e-09 Score=70.17 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 69
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=2.4e-09 Score=67.34 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 70
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.87 E-value=2.1e-09 Score=64.53 Aligned_cols=28 Identities=32% Similarity=0.460 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.++.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCCEEEEEccCCCccccceeeecccccc
Confidence 5899999999999999999999999863
No 71
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=2.5e-09 Score=69.86 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 53 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999999999863
No 72
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.86 E-value=2.6e-09 Score=69.34 Aligned_cols=28 Identities=39% Similarity=0.525 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6899999999999999999999999863
No 73
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.86 E-value=2.6e-09 Score=69.50 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 52 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKP 52 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 74
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=2.8e-09 Score=69.55 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 61 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTP 61 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999863
No 75
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=2.7e-09 Score=70.68 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 76
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.85 E-value=3.5e-09 Score=67.86 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 77
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.85 E-value=3e-09 Score=70.27 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 6899999999999999999999998863
No 78
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.85 E-value=2.9e-09 Score=69.24 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999864
No 79
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.85 E-value=3e-09 Score=69.47 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 53 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYVA 53 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999999999863
No 80
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=3.2e-09 Score=68.22 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~~ 50 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFETP 50 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 81
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.85 E-value=3.4e-09 Score=67.54 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999999999864
No 82
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.84 E-value=3.5e-09 Score=68.70 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999999998
No 83
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.84 E-value=3.5e-09 Score=67.54 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLRP 52 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 84
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=3.5e-09 Score=69.42 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIEP 53 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 85
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.83 E-value=3.4e-09 Score=71.76 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p 56 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMISP 56 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998863
No 86
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.83 E-value=3.5e-09 Score=70.35 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999863
No 87
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.83 E-value=2.4e-08 Score=63.33 Aligned_cols=28 Identities=36% Similarity=0.517 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|+.++|+||||||||||++.|++.++.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 5789999999999999999999998864
No 88
>PRK10908 cell division protein FtsE; Provisional
Probab=98.83 E-value=3.6e-09 Score=68.52 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 89
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.83 E-value=4e-09 Score=65.64 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 90
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.83 E-value=3.6e-09 Score=68.20 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999999999863
No 91
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=6.2e-09 Score=67.85 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 51 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLTP 51 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999999999864
No 92
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.83 E-value=4.2e-09 Score=68.72 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 93
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=4.1e-09 Score=68.39 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 6899999999999999999999999864
No 94
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=4e-09 Score=69.04 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 55 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPR 55 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999863
No 95
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.82 E-value=4e-09 Score=67.63 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIKP 52 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999999998863
No 96
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.82 E-value=5.7e-09 Score=66.77 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|++++|+||||||||||++.++++..+
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCC
Confidence 5899999999999999999999998854
No 97
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.82 E-value=4.2e-09 Score=64.43 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||+|||||+++|++.++.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999999998863
No 98
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.82 E-value=1e-08 Score=74.60 Aligned_cols=27 Identities=37% Similarity=0.552 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|+.++|+||||||||||++.|.+.+|
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p 401 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLP 401 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999999999994
No 99
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.82 E-value=4.4e-09 Score=67.59 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLPP 54 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999863
No 100
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.82 E-value=4.2e-09 Score=68.64 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999863
No 101
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.82 E-value=4.5e-09 Score=69.08 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 53 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMNDL 53 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 6999999999999999999999999853
No 102
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.82 E-value=4.3e-09 Score=68.63 Aligned_cols=28 Identities=39% Similarity=0.447 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 4 LKRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 4 ~~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.++++.+|+||||||||||+++|-++..
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 4689999999999999999999887763
No 103
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.82 E-value=4.4e-09 Score=69.87 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6999999999999999999999999964
No 104
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=4.6e-09 Score=68.93 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 55 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLIDP 55 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998863
No 105
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.81 E-value=4.4e-09 Score=70.19 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 59 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVRL 59 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 106
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.81 E-value=7e-10 Score=73.04 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+|||||||||+.+.|++.+++
T Consensus 29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P 56 (250)
T COG0411 29 PGEIVGLIGPNGAGKTTLFNLITGFYKP 56 (250)
T ss_pred CCeEEEEECCCCCCceeeeeeecccccC
Confidence 6899999999999999999999999975
No 107
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.81 E-value=4.7e-09 Score=68.24 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++..++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 59 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLISP 59 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 6899999999999999999999998753
No 108
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=4.6e-09 Score=68.38 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 6899999999999999999999999864
No 109
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=4.5e-09 Score=70.68 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 110
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=4.6e-09 Score=70.02 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 111
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=4.4e-09 Score=70.71 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 63 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 112
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.81 E-value=4.9e-09 Score=65.45 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999863
No 113
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=5e-09 Score=65.64 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998864
No 114
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.81 E-value=5.1e-09 Score=70.90 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~~ 54 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLPP 54 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 115
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=4.6e-09 Score=69.18 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||++.|++.++
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 689999999999999999999999985
No 116
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.81 E-value=5.3e-09 Score=66.86 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 53 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999863
No 117
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.81 E-value=5.4e-09 Score=65.72 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 6899999999999999999999999864
No 118
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.81 E-value=8.2e-09 Score=66.52 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEP 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 119
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.81 E-value=4.8e-09 Score=68.95 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQP 55 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999998863
No 120
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.81 E-value=5.4e-09 Score=68.85 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 121
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=5.4e-09 Score=65.38 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6899999999999999999999999864
No 122
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.80 E-value=5e-09 Score=66.15 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999999999864
No 123
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=4.8e-09 Score=70.18 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p 59 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLHVP 59 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 124
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.80 E-value=5e-09 Score=67.86 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 125
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=4.7e-09 Score=69.16 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999999999864
No 126
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.80 E-value=6.2e-09 Score=65.22 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 6899999999999999999999999864
No 127
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=4.5e-09 Score=67.43 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 689999999999999999999999986
No 128
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.80 E-value=5.8e-09 Score=65.75 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 129
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.80 E-value=5.5e-09 Score=69.16 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p 56 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAP 56 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998853
No 130
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.80 E-value=5.2e-09 Score=70.33 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|.+++++|||||||||++++|++.+-+
T Consensus 49 ~G~ivgflGaNGAGKSTtLKmLTGll~p 76 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKMLTGLLLP 76 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHHHhCcccc
Confidence 4999999999999999999999998853
No 131
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=5.2e-09 Score=68.52 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEMP 54 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 132
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.80 E-value=4.8e-09 Score=66.39 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLI 27 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~ 27 (91)
+|++++|+||||||||||+++|.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999999885
No 133
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.80 E-value=5.4e-09 Score=68.46 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p 73 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQP 73 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999999998863
No 134
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.80 E-value=5.5e-09 Score=67.45 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLYKP 56 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 6899999999999999999999999863
No 135
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.80 E-value=5e-09 Score=69.04 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999999875
No 136
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.80 E-value=5.2e-09 Score=68.47 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEEI 53 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 137
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=4.9e-09 Score=69.87 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999999998864
No 138
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.80 E-value=5.2e-09 Score=69.73 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIAP 59 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 139
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.80 E-value=5.2e-09 Score=67.99 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 689999999999999999999999886
No 140
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.80 E-value=5.5e-09 Score=68.85 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEPI 52 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999998864
No 141
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.80 E-value=5.5e-09 Score=69.55 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p 65 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 142
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.80 E-value=5.6e-09 Score=68.13 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 6899999999999999999999999863
No 143
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.79 E-value=5.6e-09 Score=68.18 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCC
Confidence 6899999999999999999999999863
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=5e-09 Score=69.64 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 63 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPP 63 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999999999863
No 145
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=5.6e-09 Score=69.53 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~ 61 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEKV 61 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999863
No 146
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=5.6e-09 Score=71.94 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 147
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.79 E-value=6e-09 Score=68.94 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 148
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.79 E-value=7.7e-09 Score=71.60 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p 54 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEHQ 54 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 149
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=6.9e-09 Score=71.91 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p 56 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLERI 56 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 6899999999999999999999999864
No 150
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.79 E-value=5.1e-09 Score=68.46 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999999984
No 151
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.79 E-value=8e-09 Score=71.84 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p 55 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLEDI 55 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 152
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.79 E-value=6.5e-09 Score=66.54 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+|+||||||||++.|++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999864
No 153
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.79 E-value=7e-09 Score=68.28 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||+++|.+....
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~d~ 56 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDP 56 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCC
Confidence 6999999999999999999999997764
No 154
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=6e-09 Score=68.55 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 689999999999999999999999875
No 155
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.79 E-value=6.2e-09 Score=68.14 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 54 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTRP 54 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999853
No 156
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=8e-09 Score=71.48 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p 58 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEKP 58 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 6899999999999999999999999864
No 157
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=6.1e-09 Score=70.11 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLLKP 59 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 158
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.79 E-value=6.2e-09 Score=69.20 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 63 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGLEKP 63 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 159
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=6e-09 Score=70.82 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p 59 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALLLP 59 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 160
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.79 E-value=7.2e-09 Score=67.84 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++..+.
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~ 55 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVRP 55 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999974
No 161
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.78 E-value=6.8e-09 Score=67.07 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999999998864
No 162
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=6.1e-09 Score=68.70 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 699999999999999999999999886
No 163
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.78 E-value=6e-09 Score=69.75 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~~~p 53 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGDLTG 53 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998863
No 164
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.78 E-value=6.3e-09 Score=68.83 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||++.|++.++
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 689999999999999999999999874
No 165
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=6.6e-09 Score=67.71 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~ 53 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYDV 53 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 6899999999999999999999999863
No 166
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.78 E-value=3.6e-09 Score=75.81 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCcccccc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIP 39 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~ 39 (91)
.|+.++|+||||||||||++.|.+.+++ ....|.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w~p-~~G~VR 394 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIWPP-TSGSVR 394 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccccc-CCCcEE
Confidence 5899999999999999999999999874 444443
No 167
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=6.8e-09 Score=67.81 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 57 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGDPRA 57 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6999999999999999999999999864
No 168
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=6.6e-09 Score=69.48 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIYLP 57 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 6999999999999999999999999864
No 169
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=6.7e-09 Score=68.72 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 599999999999999999999999874
No 170
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.78 E-value=7.6e-09 Score=66.80 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 63 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHV 63 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 171
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=6.1e-09 Score=66.89 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+| +++|+||||||||||+++|++.+++
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~ 51 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCC
Confidence 47 9999999999999999999998864
No 172
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.78 E-value=6.8e-09 Score=68.80 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 54 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGELSP 54 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 173
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1.8e-08 Score=64.37 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccch-----------hcCCceEeeCccc-----------
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELE-----------ENGQNYWFTSREV----------- 62 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~-----------~~~~~~~~~~~~~----------- 62 (91)
+|++++|+|.||||||||+++|+..+.+ -...+.+..|.....+ .-..+..|+....
T Consensus 31 PGeVLgiVGESGSGKtTLL~~is~rl~p-~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG 109 (258)
T COG4107 31 PGEVLGIVGESGSGKTTLLKCISGRLTP-DAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAG 109 (258)
T ss_pred CCcEEEEEecCCCcHHhHHHHHhcccCC-CCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccC
Confidence 6999999999999999999999999864 3333444433221100 1112333433222
Q ss_pred ----------cccccccCHHHHHHHHHhCC
Q psy4405 63 ----------NVGLAGTYIPMYHSEIRAYP 82 (91)
Q Consensus 63 ----------~~~~yg~~~~~i~~~~~~g~ 82 (91)
-...||.-+++..+|+++-+
T Consensus 110 ~NiGERlma~G~RHYG~iR~~a~~WL~~VE 139 (258)
T COG4107 110 GNIGERLMAIGARHYGNIRAEAQDWLEEVE 139 (258)
T ss_pred CccchhHHhhhhhhhhhHHHHHHHHHHhcc
Confidence 33578888888888888654
No 174
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.78 E-value=6.8e-09 Score=67.46 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.++.
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 32 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIPP 32 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999998763
No 175
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=6.6e-09 Score=69.49 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (275)
T PRK13639 27 KGEMVALLGPNGAGKSTLFLHFNGILKP 54 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 176
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.77 E-value=7.6e-09 Score=67.09 Aligned_cols=28 Identities=36% Similarity=0.361 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 66 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFYQP 66 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 6899999999999999999999999863
No 177
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=6.6e-09 Score=69.27 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 689999999999999999999999864
No 178
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=7.3e-09 Score=69.53 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 32 RGSWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcccCC
Confidence 6899999999999999999999999853
No 179
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.77 E-value=7.4e-09 Score=67.08 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILRP 52 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 180
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=8e-09 Score=69.45 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p 59 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 181
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=7.4e-09 Score=69.30 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p 56 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILKP 56 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6999999999999999999999999864
No 182
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=7.1e-09 Score=68.18 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 689999999999999999999998874
No 183
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.77 E-value=6.9e-09 Score=68.76 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 689999999999999999999999873
No 184
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.77 E-value=7.8e-09 Score=68.83 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999999999875
No 185
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.77 E-value=9.4e-09 Score=71.71 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~p 66 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFETP 66 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 186
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.77 E-value=4.1e-09 Score=75.75 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|.+.+++
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6999999999999999999999999874
No 187
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.77 E-value=6.9e-09 Score=72.98 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~LaGll~p 55 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAINGTLTP 55 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 6999999999999999999999999864
No 188
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=7.5e-09 Score=69.21 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (274)
T PRK13644 27 KGEYIGIIGKNGSGKSTLALHLNGLLRP 54 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 189
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.77 E-value=7.7e-09 Score=71.50 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~p 49 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTRP 49 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999999999864
No 190
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=7.7e-09 Score=68.99 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 191
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.76 E-value=7e-09 Score=68.94 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 59 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLMTP 59 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999999999864
No 192
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.76 E-value=7.7e-09 Score=67.28 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 74 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998763
No 193
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=8.7e-09 Score=69.10 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~p 59 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLLLP 59 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 194
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=1.3e-08 Score=66.42 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||+|||||+++|++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999874
No 195
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.76 E-value=8.9e-09 Score=65.90 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++..++
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 6999999999999999999999998863
No 196
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=8.8e-09 Score=67.72 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 689999999999999999999999875
No 197
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=8.9e-09 Score=69.01 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLEA 59 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 198
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.75 E-value=8.4e-09 Score=68.36 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||++.|++.++
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 689999999999999999999999985
No 199
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.75 E-value=9.4e-09 Score=65.92 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.++.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 60 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 6899999999999999999999998863
No 200
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.75 E-value=1.5e-08 Score=66.32 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQP 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999998864
No 201
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.75 E-value=8.9e-09 Score=68.71 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p 76 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLSP 76 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6999999999999999999999999863
No 202
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=8.8e-09 Score=68.53 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++..
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999999999965
No 203
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=9.1e-09 Score=67.81 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 689999999999999999999999874
No 204
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.75 E-value=9.7e-09 Score=71.10 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p 56 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLERQ 56 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 5899999999999999999999999864
No 205
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.75 E-value=9.3e-09 Score=68.46 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 689999999999999999999999874
No 206
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.75 E-value=9.5e-09 Score=66.50 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|.+..|+||||||||||+.+++++.+
T Consensus 26 ~g~iTs~IGPNGAGKSTLLS~~sRL~~ 52 (252)
T COG4604 26 KGGITSIIGPNGAGKSTLLSMMSRLLK 52 (252)
T ss_pred CCceeEEECCCCccHHHHHHHHHHhcc
Confidence 589999999999999999999998886
No 207
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.75 E-value=8.9e-09 Score=67.72 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 689999999999999999999999753
No 208
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=9e-09 Score=65.52 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||++.|++.+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999999865
No 209
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.75 E-value=9.5e-09 Score=66.36 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 53 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 6899999999999999999999999853
No 210
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.75 E-value=9.1e-09 Score=67.97 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++..++
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 211
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.75 E-value=9.2e-09 Score=71.10 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p 50 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTRP 50 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 212
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.75 E-value=9.4e-09 Score=70.97 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|.+..++
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~p 57 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLERP 57 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 213
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=9.4e-09 Score=68.04 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999999875
No 214
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.75 E-value=9.2e-09 Score=67.98 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 53 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGALRP 53 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6999999999999999999999999864
No 215
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=9.9e-09 Score=67.54 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||++.|++.++
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 689999999999999999999999874
No 216
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=9.6e-09 Score=69.23 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQP 59 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 217
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.74 E-value=9e-09 Score=67.88 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++..+
T Consensus 21 ~Gei~~l~G~nGsGKSTLl~~l~Gl~~ 47 (248)
T PRK03695 21 AGEILHLVGPNGAGKSTLLARMAGLLP 47 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 689999999999999999999999886
No 218
>KOG0057|consensus
Probab=98.74 E-value=1e-08 Score=73.93 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccc--hhcCCceEeeCccc--------cccccccCHHHH
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMREL--EENGQNYWFTSREV--------NVGLAGTYIPMY 74 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~--~~~~~~~~~~~~~~--------~~~~yg~~~~~i 74 (91)
+|+-++|+|+|||||||++++|.+.+. ....+..+....+.- +--..-+.++.++. .+..||.+...-
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~ 454 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASD 454 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCH
Confidence 699999999999999999999999985 444444443222111 11112234444444 567788877666
Q ss_pred HHHHHhCC
Q psy4405 75 HSEIRAYP 82 (91)
Q Consensus 75 ~~~~~~g~ 82 (91)
+++.+.+|
T Consensus 455 eeV~e~~k 462 (591)
T KOG0057|consen 455 EEVVEACK 462 (591)
T ss_pred HHHHHHHH
Confidence 66666655
No 219
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.7e-08 Score=71.97 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVI 38 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v 38 (91)
+|+.++|+|+||||||||++.|++.+++ ....+
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~-~~G~I 378 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAP-TQGEI 378 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCC-CCceE
Confidence 6899999999999999999999999974 33333
No 220
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=9.9e-09 Score=67.78 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (255)
T PRK11231 27 TGKITALIGPNGCGKSTLLKCFARLLTP 54 (255)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999999998863
No 221
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.3e-08 Score=65.17 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|+.+.|.||||+|||||+++|++...+
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p 54 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRP 54 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCC
Confidence 6899999999999999999999999964
No 222
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.74 E-value=1e-08 Score=67.75 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 57 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEKP 57 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999864
No 223
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.74 E-value=5.6e-09 Score=77.71 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|+.++|+|+||||||||+|.|.+.+.+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4999999999999999999999999964
No 224
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.74 E-value=1e-08 Score=71.33 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|.+.+++
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p 45 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEP 45 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 6999999999999999999999999974
No 225
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=1.2e-08 Score=67.29 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||++.|++..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 699999999999999999999999864
No 226
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=1.1e-08 Score=67.31 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMNDI 56 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCc
Confidence 6899999999999999999999999863
No 227
>PRK13409 putative ATPase RIL; Provisional
Probab=98.73 E-value=1.2e-08 Score=74.67 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~l~p 125 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIP 125 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 7999999999999999999999999864
No 228
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=1.2e-08 Score=67.25 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999999975
No 229
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=1.2e-08 Score=67.50 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+|+||||||||+++|++.++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 699999999999999999999999875
No 230
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.73 E-value=1.3e-08 Score=64.49 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|.||||||||||.++++.+.++
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCC
Confidence 6899999999999999999999998864
No 231
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.1e-08 Score=67.33 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999999874
No 232
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=1.3e-08 Score=68.50 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p 58 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 233
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.72 E-value=2.4e-08 Score=64.11 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.+.|+||||||||||+++|.....+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 5999999999999999999999987753
No 234
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.72 E-value=9.2e-09 Score=60.53 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|+|.||+||||||+++.|++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999976
No 235
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.3e-08 Score=67.93 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+|+||||||||+++|++.++
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 689999999999999999999999874
No 236
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.2e-08 Score=67.20 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999999875
No 237
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.3e-08 Score=66.97 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++..+
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 689999999999999999999999863
No 238
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=1.2e-08 Score=68.35 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.++.
T Consensus 35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 62 (280)
T PRK13633 35 KGEFLVILGRNGSGKSTIAKHMNALLIP 62 (280)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999874
No 239
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=1.2e-08 Score=69.94 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+|+||||||||+++|++.++
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 689999999999999999999999885
No 240
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=1.1e-08 Score=69.58 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|++++|+||||||||||+++|+++..+
T Consensus 27 ~Ge~vaLlGpSGaGKsTlLRiIAGLe~p 54 (345)
T COG1118 27 SGELVALLGPSGAGKSTLLRIIAGLETP 54 (345)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCcCCC
Confidence 6999999999999999999999998854
No 241
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.72 E-value=1.3e-08 Score=70.73 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p 57 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGFVKA 57 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 242
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.72 E-value=1.6e-08 Score=64.99 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
++.+++|.|+||||||||++.|.+.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999999999999873
No 243
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.72 E-value=1.2e-08 Score=73.21 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p 56 (501)
T PRK10762 29 PGRVMALVGENGAGKSTMMKVLTGIYTR 56 (501)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 244
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.3e-08 Score=67.65 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++..+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 699999999999999999999998753
No 245
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.4e-08 Score=66.86 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 689999999999999999999999874
No 246
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.3e-08 Score=68.04 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~~ 71 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRMND 71 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 689999999999999999999998863
No 247
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.71 E-value=1.4e-08 Score=66.99 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||+|||||++.|.+++.+
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I~Gll~P 60 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLILGLLRP 60 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHHhccCCC
Confidence 6999999999999999999999999964
No 248
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=1.3e-08 Score=68.28 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p 58 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGILKP 58 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 249
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.71 E-value=1.6e-08 Score=67.53 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|++++|+|||||||||+++||.++..+
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccCC
Confidence 6899999999999999999999998864
No 250
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.71 E-value=1.4e-08 Score=68.36 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 62 ~Ge~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998864
No 251
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.71 E-value=1.4e-08 Score=67.76 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 64 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLESP 64 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998863
No 252
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.4e-08 Score=69.65 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+|+||||||||+++|++..+
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 689999999999999999999999985
No 253
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.71 E-value=1.5e-08 Score=65.53 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.++.
T Consensus 30 ~G~~~~I~G~nGsGKStLl~~l~G~~~~ 57 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGGLRSV 57 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998864
No 254
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.4e-08 Score=66.91 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhh
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINS 29 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~ 29 (91)
+|++++|+||||||||||+++|++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 6899999999999999999999875
No 255
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=1.4e-08 Score=71.42 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|.+.+++
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~p 80 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRLIEP 80 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 6899999999999999999999999864
No 256
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=1.9e-08 Score=70.21 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p 71 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQP 71 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 257
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.4e-08 Score=66.73 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999999986
No 258
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.71 E-value=1.3e-08 Score=72.66 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~p 55 (490)
T PRK10938 28 AGDSWAFVGANGSGKSALARALAGELPL 55 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 6899999999999999999999998863
No 259
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.71 E-value=1.6e-08 Score=64.55 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++.+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999999998
No 260
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.3e-08 Score=66.82 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
.|++.+|+||||||||||+..|++.-
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999999875
No 261
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.5e-08 Score=67.58 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999999999875
No 262
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=1.7e-08 Score=69.06 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p 78 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999864
No 263
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.5e-08 Score=67.85 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 689999999999999999999999875
No 264
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.71 E-value=1.5e-08 Score=59.41 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLI 27 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~ 27 (91)
.|+.++|+||||||||||+++|.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 47899999999999999999986
No 265
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=1.5e-08 Score=68.13 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||++.|++.++
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 689999999999999999999999874
No 266
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1.3e-08 Score=72.96 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999999886
No 267
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.70 E-value=6.3e-08 Score=63.85 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKF 34 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~ 34 (91)
+|+.++|+||||||||||++.|.+.+++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~ 58 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCC
Confidence 589999999999999999999999997533
No 268
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.6e-08 Score=65.18 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 7 KTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 7 ~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
++++|+||||||||||+++|++.+++
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~ 49 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKP 49 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCC
Confidence 89999999999999999999999863
No 269
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.69 E-value=1.8e-08 Score=70.45 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|.+.+++
T Consensus 49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~~p 76 (382)
T TIGR03415 49 EGEICVLMGLSGSGKSSLLRAVNGLNPV 76 (382)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 270
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.69 E-value=1.6e-08 Score=72.95 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 34 AGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999999999999986
No 271
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.69 E-value=2.5e-08 Score=53.14 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
|.++.|.||||||||||+.+|.-.+
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999987655
No 272
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.69 E-value=1.4e-08 Score=66.56 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 68999999999999999999999984
No 273
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.7e-08 Score=67.95 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++..
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999999964
No 274
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.69 E-value=3.6e-08 Score=72.96 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+|+||||||||++.|++.+++
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5999999999999999999999999974
No 275
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.69 E-value=1.5e-08 Score=66.69 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhh
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINS 29 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~ 29 (91)
+|++++|+||||||||||+++|++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999999996
No 276
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.7e-08 Score=72.80 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p 53 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDLEP 53 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998863
No 277
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.68 E-value=1.8e-08 Score=72.43 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p 63 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPP 63 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 278
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=1.9e-08 Score=67.33 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGLFEE 59 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 6999999999999999999999999874
No 279
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=2e-08 Score=66.78 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (261)
T PRK14263 33 KNEITGFIGPSGCGKSTVLRSLNRMND 59 (261)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccc
Confidence 599999999999999999999999875
No 280
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.68 E-value=2.3e-08 Score=65.10 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+..+|+|.|+|||||||+++.|...+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4568999999999999999999999863
No 281
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=2e-08 Score=66.70 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++..+
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 67 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCFNRMHD 67 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 689999999999999999999999864
No 282
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=2.1e-08 Score=66.58 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 32 QSKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 6999999999999999999999999863
No 283
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.68 E-value=1.8e-08 Score=72.35 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 315 (510)
T PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVDKR 315 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 6899999999999999999999998853
No 284
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=2.3e-08 Score=61.59 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||+|||||+++|++.++.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999999998863
No 285
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.68 E-value=1.7e-08 Score=72.43 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p 57 (510)
T PRK09700 30 PGEIHALLGENGAGKSTLMKVLSGIHEP 57 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCcCC
Confidence 6899999999999999999999999853
No 286
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.67 E-value=3e-08 Score=73.81 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|.+.+++
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 533 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQP 533 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 6999999999999999999999999974
No 287
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=2.5e-08 Score=65.23 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~p 51 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGFIKP 51 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 5899999999999999999999998864
No 288
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.67 E-value=2.1e-08 Score=65.62 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 3 PLKRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 3 ~~~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
++.+.+++|+||||||||||+++|...+
T Consensus 20 ~~~~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 20 PFSPKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred cCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999998543
No 289
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.67 E-value=2.6e-08 Score=62.94 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.|++++|+||||||||||++.|.+.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999999875
No 290
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.67 E-value=1e-08 Score=74.36 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|.+.+.+
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 5999999999999999999999999974
No 291
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2.2e-08 Score=66.39 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~~ 62 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRLIEI 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998753
No 292
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.67 E-value=2.3e-08 Score=66.17 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+|+||||||||+++|++.+++
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 73 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMVDI 73 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccCC
Confidence 6899999999999999999999999864
No 293
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.67 E-value=2.2e-08 Score=64.11 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||++.|++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999999983
No 294
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=2.3e-08 Score=68.56 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+|+||||||||+++|++.++.
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~~p 67 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMIETP 67 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Confidence 6899999999999999999999999864
No 295
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.66 E-value=2.1e-08 Score=71.68 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++..+
T Consensus 285 ~Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 285 PGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 689999999999999999999999765
No 296
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=2.2e-08 Score=73.79 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 26 ~Ge~v~LvG~NGsGKSTLLkiL~G~~~ 52 (638)
T PRK10636 26 PGQKVGLVGKNGCGKSTLLALLKNEIS 52 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999999875
No 297
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.66 E-value=2.5e-08 Score=72.37 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~p 59 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGVDKE 59 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 298
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.65 E-value=2.3e-08 Score=73.56 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 41 ~Ge~~~lvG~nGsGKSTLl~~l~Gll~p 68 (623)
T PRK10261 41 RGETLAIVGESGSGKSVTALALMRLLEQ 68 (623)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 6899999999999999999999999863
No 299
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.65 E-value=2.6e-08 Score=68.41 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+|+||||||||+++|++.++.
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p 73 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGLVKA 73 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 6899999999999999999999999864
No 300
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.65 E-value=2.3e-08 Score=71.55 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++..+
T Consensus 26 ~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 26 PGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999999886
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.65 E-value=2.6e-08 Score=71.68 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 309 ~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p 336 (520)
T TIGR03269 309 EGEIFGIVGTSGAGKTTLSKIIAGVLEP 336 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 302
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.65 E-value=2.4e-08 Score=68.55 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+|+||||||||+++|++.++.
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 6999999999999999999999999864
No 303
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=2.8e-08 Score=65.40 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 28 KNSVTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 68999999999999999999999874
No 304
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.65 E-value=2.4e-08 Score=71.49 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++..+
T Consensus 285 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 311 (500)
T TIGR02633 285 RGEILGVAGLVGAGRTELVQALFGAYP 311 (500)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999999985
No 305
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.9e-08 Score=67.37 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 689999999999999999999999873
No 306
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.64 E-value=2.6e-08 Score=71.81 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 311 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 337 (529)
T PRK15134 311 PGETLGLVGESGSGKSTTGLALLRLIN 337 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 689999999999999999999999886
No 307
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.64 E-value=2.5e-08 Score=73.40 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 28 ~Ge~v~LvG~NGsGKSTLLriiaG~~~p 55 (635)
T PRK11147 28 DNERVCLVGRNGAGKSTLMKILNGEVLL 55 (635)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999999998753
No 308
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.64 E-value=2.9e-08 Score=71.97 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 30 ~Ge~~~liG~NGsGKSTLl~~i~G~~~p 57 (552)
T TIGR03719 30 PGAKIGVLGLNGAGKSTLLRIMAGVDKE 57 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998853
No 309
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.64 E-value=2.7e-08 Score=71.59 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||+++|++..
T Consensus 25 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 25 EGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999999999985
No 310
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.4e-08 Score=71.60 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.+++
T Consensus 278 ~Ge~~~iiG~NGsGKSTLlk~l~G~~~p 305 (501)
T PRK11288 278 AGEIVGLFGLVGAGRSELMKLLYGATRR 305 (501)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHcCCCcC
Confidence 6899999999999999999999999863
No 311
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.8e-08 Score=73.26 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p 364 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELAP 364 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998863
No 312
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=2.7e-08 Score=71.44 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.++
T Consensus 287 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 313 (506)
T PRK13549 287 RGEILGIAGLVGAGRTELVQCLFGAYP 313 (506)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999999875
No 313
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.7e-08 Score=71.14 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 23 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 50 (491)
T PRK10982 23 PHSIHALMGENGAGKSTLLKCLFGIYQK 50 (491)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999999999863
No 314
>KOG0056|consensus
Probab=98.63 E-value=2.7e-08 Score=71.75 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|+.++|+||||+||||+++.|.+.+.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffd 589 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFD 589 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhh
Confidence 489999999999999999999999885
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=3e-08 Score=71.50 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p 371 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELEP 371 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998753
No 316
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.63 E-value=3e-08 Score=71.13 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 277 ~Ge~~~liG~NGsGKSTLl~~l~G~~~p 304 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKVLYGALPR 304 (501)
T ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998853
No 317
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.63 E-value=2.9e-08 Score=71.39 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p 315 (510)
T PRK15439 288 AGEILGLAGVVGAGRTELAETLYGLRPA 315 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999999998753
No 318
>KOG0055|consensus
Probab=98.62 E-value=2.9e-08 Score=76.82 Aligned_cols=77 Identities=21% Similarity=0.097 Sum_probs=46.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCccccccccCCCCccch--hcCCceEeeCccc--------cccccccCHHHH
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELE--ENGQNYWFTSREV--------NVGLAGTYIPMY 74 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~~~~v~~~tr~~~~~~--~~~~~~~~~~~~~--------~~~~yg~~~~~i 74 (91)
.|+.++|+|||||||||+++.|.+.+.+ ....|..+..+.+.-. .-......++++. .+..||.+..+-
T Consensus 378 ~G~~valVG~SGsGKST~i~LL~RfydP-~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~ 456 (1228)
T KOG0055|consen 378 SGQTVALVGPSGSGKSTLIQLLARFYDP-TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATR 456 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC-CCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccH
Confidence 4999999999999999999999999964 3333333322111100 0011223333333 677888876555
Q ss_pred HHHHHhCC
Q psy4405 75 HSEIRAYP 82 (91)
Q Consensus 75 ~~~~~~g~ 82 (91)
+++.++.|
T Consensus 457 ~~i~~a~k 464 (1228)
T KOG0055|consen 457 EEIEEAAK 464 (1228)
T ss_pred HHHHHHHH
Confidence 55555443
No 319
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.62 E-value=3.9e-08 Score=66.06 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|.+.++
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 689999999999999999999999986
No 320
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.62 E-value=1.1e-07 Score=68.87 Aligned_cols=28 Identities=36% Similarity=0.498 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+|+||||||||+++|++..++
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999975
No 321
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.62 E-value=3.5e-08 Score=70.79 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 56 (501)
T PRK11288 29 AGQVHALMGENGAGKSTLLKILSGNYQP 56 (501)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 322
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.62 E-value=3.5e-08 Score=72.70 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p 371 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQLQA 371 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6899999999999999999999998753
No 323
>KOG1384|consensus
Probab=98.61 E-value=6.3e-08 Score=66.23 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=62.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcC--------ccccccccCCCCccchhcCCceEeeCccc------cccccccC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEK--------FAAVIPYTTRPMRELEENGQNYWFTSREV------NVGLAGTY 70 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~--------~~~~v~~~tr~~~~~~~~~~~~~~~~~~~------~~~~yg~~ 70 (91)
+-++++|+|++|||||-|+=-|+..++.. +-......|.+....+..++.+|....-. .+.++...
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 46799999999999999999999988631 11122244667666777888877666333 56677777
Q ss_pred HHHHHHHHHhCCCeEec
Q psy4405 71 IPMYHSEIRAYPPVEIP 87 (91)
Q Consensus 71 ~~~i~~~~~~g~~~~~~ 87 (91)
...++++..+|+.+++.
T Consensus 86 ~~aie~I~~rgk~PIv~ 102 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVV 102 (348)
T ss_pred HHHHHHHHhCCCCCEEe
Confidence 88999999999998873
No 324
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.61 E-value=7e-08 Score=70.31 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+|+||||||||++.|.+.+++
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 6899999999999999999999999974
No 325
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.61 E-value=4.9e-08 Score=64.44 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 3 PLKRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 3 ~~~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
++.+.+.+|+||||||||||+++|...+.
T Consensus 22 ~~~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 22 GFDPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45667999999999999999999998864
No 326
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.60 E-value=4.4e-08 Score=71.12 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p 376 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQEQP 376 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998863
No 327
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.60 E-value=4.3e-08 Score=63.01 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
.|++++|+||||+|||||++.|....
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46899999999999999999997643
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.60 E-value=4e-08 Score=71.24 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p 374 (552)
T TIGR03719 347 PGGIVGVIGPNGAGKSTLFRMITGQEQP 374 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999999998763
No 329
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.59 E-value=6.1e-08 Score=59.99 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=26.0
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 1 m~~~~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
||+ +..|+|+|++||||||+++.|++.+.
T Consensus 1 ~~~--~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 1 MLK--GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCC--CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 566 78999999999999999999999874
No 330
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.59 E-value=4.6e-08 Score=71.94 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 349 ~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p 376 (623)
T PRK10261 349 PGETLSLVGESGSGKSTTGRALLRLVES 376 (623)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6899999999999999999999999863
No 331
>PRK13409 putative ATPase RIL; Provisional
Probab=98.59 E-value=5e-08 Score=71.49 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p 391 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKP 391 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999998863
No 332
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.59 E-value=4.3e-08 Score=70.12 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 273 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 300 (491)
T PRK10982 273 KGEILGIAGLVGAKRTDIVETLFGIREK 300 (491)
T ss_pred CCcEEEEecCCCCCHHHHHHHHcCCCcC
Confidence 6899999999999999999999998863
No 333
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.58 E-value=4.6e-08 Score=63.40 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhh
Q psy4405 7 KTIALVGCQGVGRRTLKARLINS 29 (91)
Q Consensus 7 ~~i~l~GpsGaGKsTl~~~L~~~ 29 (91)
++++|+|||||||||++++|...
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998743
No 334
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.58 E-value=6.4e-08 Score=60.55 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
++++++|+|+||+|||||++.|....
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56899999999999999999998875
No 335
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.58 E-value=3.4e-08 Score=64.38 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++|.||||||||||++.|.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998874
No 336
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.57 E-value=7.1e-08 Score=70.27 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|++.+++
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p 392 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAWDP 392 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5999999999999999999999999864
No 337
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.57 E-value=5.8e-08 Score=63.41 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+..+++|+||||||||||++.|.+.++.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4668999999999999999999998863
No 338
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.57 E-value=4.6e-08 Score=62.33 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+++|.||||||||||+++|.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 339
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.57 E-value=6.7e-08 Score=62.64 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|+.++++||||||||||++.+++...+
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 6899999999999999999999998853
No 340
>PLN03073 ABC transporter F family; Provisional
Probab=98.56 E-value=6e-08 Score=72.47 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p 561 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQP 561 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6899999999999999999999998863
No 341
>PRK08233 hypothetical protein; Provisional
Probab=98.56 E-value=8.5e-08 Score=59.89 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+.+++|.|++|||||||++.|...++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999999875
No 342
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.56 E-value=6.4e-08 Score=62.09 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+| +++|+||||||||||+++|....+
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHhc
Confidence 46 899999999999999999987764
No 343
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.55 E-value=6.5e-08 Score=62.51 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhh
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINS 29 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~ 29 (91)
+|++++|+||||||||||+++|...
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheee
Confidence 3679999999999999999999743
No 344
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.55 E-value=7.2e-08 Score=69.90 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.+++
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P 76 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTMP 76 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999863
No 345
>KOG0061|consensus
Probab=98.55 E-value=1.2e-07 Score=69.81 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc--CccccccccC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE--KFAAVIPYTT 42 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~--~~~~~v~~~t 42 (91)
.|++++|+||||||||||+++|++..+. .....+....
T Consensus 55 ~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 55 PGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred cCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 5899999999999999999999999874 2444555444
No 346
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.54 E-value=9.7e-08 Score=69.38 Aligned_cols=28 Identities=36% Similarity=0.418 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|++.+++
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 6899999999999999999999999974
No 347
>PLN03211 ABC transporter G-25; Provisional
Probab=98.54 E-value=7.4e-08 Score=71.38 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||++.|++..+
T Consensus 93 ~Ge~~aI~GpnGaGKSTLL~iLaG~~~ 119 (659)
T PLN03211 93 PGEILAVLGPSGSGKSTLLNALAGRIQ 119 (659)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999999875
No 348
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=8.4e-08 Score=65.90 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|.+..+
T Consensus 107 ~Ge~v~IvG~~GsGKSTLl~~L~g~~~ 133 (329)
T PRK14257 107 RNKVTAFIGPSGCGKSTFLRNLNQLND 133 (329)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 589999999999999999999999874
No 349
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.53 E-value=5.2e-08 Score=77.27 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|.+++.+
T Consensus 1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1193 SKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 5899999999999999999999999863
No 350
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.53 E-value=2e-07 Score=63.27 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 4 LKRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 4 ~~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+++++.+|+|+||+|||||+++|....
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCchh
Confidence 478899999999999999999998754
No 351
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.53 E-value=8e-08 Score=60.96 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.++|+||+||||||+++.|++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999975
No 352
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.53 E-value=9.2e-08 Score=71.03 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|++.+++
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p 531 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQP 531 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5999999999999999999999999974
No 353
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.53 E-value=9.9e-08 Score=63.79 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+|.|||||||+.++|+++..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p 65 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP 65 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC
Confidence 6999999999999999999999999974
No 354
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.52 E-value=1.1e-07 Score=57.20 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++++||+||||||+++.|.+.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999998775
No 355
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.52 E-value=1e-07 Score=69.04 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|++.+++
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~~~~ 375 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGLYQP 375 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999864
No 356
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.52 E-value=1.1e-07 Score=59.73 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+.++++|+||+||||||+++.|+..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999765
No 357
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.51 E-value=1.2e-07 Score=68.30 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|++.+++
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6999999999999999999999999974
No 358
>PLN03073 ABC transporter F family; Provisional
Probab=98.51 E-value=8.1e-08 Score=71.77 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhh
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINS 29 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~ 29 (91)
.|+.++|+||||||||||+++|++.
T Consensus 202 ~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 202 FGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999999875
No 359
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.51 E-value=9.4e-08 Score=64.76 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.+.+++|+|||||||||++++|.+.+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999877764
No 360
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.51 E-value=1.2e-07 Score=69.04 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|.+.+++
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~p 367 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFDV 367 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 6999999999999999999999999864
No 361
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.51 E-value=9.2e-08 Score=68.71 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++.+|+|.||||||||++.|++.+++
T Consensus 33 ~GEV~aL~GeNGAGKSTLmKiLsGv~~p 60 (500)
T COG1129 33 PGEVHALLGENGAGKSTLMKILSGVYPP 60 (500)
T ss_pred CceEEEEecCCCCCHHHHHHHHhCcccC
Confidence 6999999999999999999999999974
No 362
>PRK08118 topology modulation protein; Reviewed
Probab=98.51 E-value=1.1e-07 Score=59.55 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.|+|+||+|||||||++.|...+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998874
No 363
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.49 E-value=1.6e-07 Score=54.93 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+..+.|+||+|+||||+++.|+..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 568999999999999999999988853
No 364
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.49 E-value=9.8e-08 Score=60.84 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|+|.||+|||||||++.|...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998875
No 365
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.49 E-value=1.4e-07 Score=70.03 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|++.+++
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 5999999999999999999999999864
No 366
>PRK06762 hypothetical protein; Provisional
Probab=98.49 E-value=1.4e-07 Score=58.46 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+.+++|.|++||||||+++.|.+.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34999999999999999999998874
No 367
>KOG0055|consensus
Probab=98.49 E-value=9e-08 Score=74.17 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|+.++|+|||||||||++.+|-+.|.+
T Consensus 1015 ~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6899999999999999999999888853
No 368
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.48 E-value=1.4e-07 Score=68.40 Aligned_cols=28 Identities=36% Similarity=0.441 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+|+||||||||++.|++.+++
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 6999999999999999999999999964
No 369
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.48 E-value=1.8e-07 Score=58.53 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEKF 34 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~~ 34 (91)
+|+++-|+||||||||||+.-+.+.+.+.|
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F 56 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQF 56 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccCc
Confidence 699999999999999999999998886533
No 370
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.48 E-value=1.4e-07 Score=68.81 Aligned_cols=28 Identities=39% Similarity=0.570 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+|+||||||||++.|.+.+++
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 6999999999999999999999999974
No 371
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.47 E-value=1.5e-07 Score=68.07 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|++.+++
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 370 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGIWPP 370 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5999999999999999999999999864
No 372
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.47 E-value=1.5e-07 Score=60.38 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHh
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLIN 28 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~ 28 (91)
.|++++|+||||+|||||+++|..
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 467999999999999999999984
No 373
>KOG3354|consensus
Probab=98.47 E-value=3e-07 Score=57.44 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++++|++||||||+.++|+..+.
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhC
Confidence 899999999999999999999885
No 374
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.47 E-value=1.8e-07 Score=69.41 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|.+.+++
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5999999999999999999999999974
No 375
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.47 E-value=1.5e-07 Score=69.73 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|++.++.
T Consensus 477 ~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~ 504 (659)
T TIGR00954 477 SGNHLLICGPNGCGKSSLFRILGELWPV 504 (659)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999999864
No 376
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.47 E-value=1.6e-07 Score=61.27 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=18.1
Q ss_pred CCcEEEEEcCCCCCHHHHH
Q psy4405 5 KRKTIALVGCQGVGRRTLK 23 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~ 23 (91)
+|++++|+||||||||||+
T Consensus 20 ~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 20 RNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 6999999999999999996
No 377
>PRK07261 topology modulation protein; Provisional
Probab=98.47 E-value=1.6e-07 Score=58.94 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.|+|+|++|||||||++.|+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988763
No 378
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.47 E-value=1.8e-07 Score=58.58 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|.+++|.|++||||||+++.|...+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999988774
No 379
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.46 E-value=2e-07 Score=59.67 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|+++=++||||||||||+..|+++.|.
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~~~ 51 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMTSG 51 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCCCC
Confidence 5889999999999999999999999973
No 380
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.46 E-value=2.2e-07 Score=63.42 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+|.||||||||++++..+-.
T Consensus 31 ~GeI~GIIG~SGAGKSTLiR~iN~Le~ 57 (339)
T COG1135 31 KGEIFGIIGYSGAGKSTLLRLINLLER 57 (339)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Confidence 699999999999999999998877664
No 381
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.45 E-value=2e-07 Score=67.65 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|++.+++
T Consensus 367 ~G~~~aivG~sGsGKSTl~~ll~g~~~p 394 (555)
T TIGR01194 367 QGDIVFIVGENGCGKSTLAKLFCGLYIP 394 (555)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6999999999999999999999998864
No 382
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.45 E-value=1.9e-07 Score=67.79 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|..++|+|+||+|||||++.|++...+
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~~ 55 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELEP 55 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 6899999999999999999999998853
No 383
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.45 E-value=1.8e-07 Score=67.84 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|..|+|+||||+|||||++.|++...+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~ 374 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGP 374 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhccc
Confidence 5889999999999999999999887753
No 384
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.45 E-value=2.1e-07 Score=61.62 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|+--+|+||||||||||++.|++.+++
T Consensus 56 ~ge~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred CCCcEEEECCCCCCHHHHHHHHhcccCC
Confidence 5777899999999999999999999875
No 385
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.44 E-value=1.3e-06 Score=59.51 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.++.++|+||+|||||||++.|++.++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 4779999999999999999999999874
No 386
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.44 E-value=2e-07 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+++|.|++||||||+++.|...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 387
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.44 E-value=2e-07 Score=68.13 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|++.+++
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 387 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRVYDP 387 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccCCCC
Confidence 6999999999999999999999999874
No 388
>PRK14527 adenylate kinase; Provisional
Probab=98.44 E-value=3e-07 Score=58.39 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 3 PLKRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 3 ~~~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
..++++++|+||+||||||+++.|+..+.
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999999997764
No 389
>PTZ00301 uridine kinase; Provisional
Probab=98.43 E-value=2.1e-07 Score=60.43 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
..+|+|.||||||||||++.|.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 3689999999999999999887654
No 390
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.42 E-value=2.9e-07 Score=58.23 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+..+++|+|++|||||||++.|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 445899999999999999999998874
No 391
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.42 E-value=2.8e-07 Score=66.75 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+|+||||||||++.|++.+.+
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 6899999999999999999999999863
No 392
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.42 E-value=2.2e-07 Score=66.42 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++.+|+|.||||||||+++|.+.+.+
T Consensus 29 ~GeIHaLLGENGAGKSTLm~iL~G~~~P 56 (501)
T COG3845 29 KGEIHALLGENGAGKSTLMKILFGLYQP 56 (501)
T ss_pred CCcEEEEeccCCCCHHHHHHHHhCcccC
Confidence 6999999999999999999999999964
No 393
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.42 E-value=9.5e-07 Score=59.67 Aligned_cols=27 Identities=44% Similarity=0.535 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.++.++|+|+||+|||||++.|.+...
T Consensus 160 ~~k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 160 KGKTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ccceEEEECCCCCCHHHHHHHHhchhh
Confidence 467899999999999999999998764
No 394
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.41 E-value=1.2e-06 Score=56.21 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++|+||+||||||+++.|+..++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999888775
No 395
>PRK14530 adenylate kinase; Provisional
Probab=98.40 E-value=3e-07 Score=59.41 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
++.|+|+||+||||||+++.|++.+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55789999999999999999998875
No 396
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.40 E-value=2.7e-07 Score=67.88 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||++.|++..+
T Consensus 50 ~Ge~~aI~G~sGsGKSTLL~~L~g~~~ 76 (617)
T TIGR00955 50 PGELLAVMGSSGAGKTTLMNALAFRSP 76 (617)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999999875
No 397
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.40 E-value=9.4e-07 Score=53.73 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.|.+++|.|+.|||||||++.|++.+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999999874
No 398
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.40 E-value=6.9e-08 Score=62.49 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCcC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPEK 33 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~~ 33 (91)
.|++-+|+|||||||||++..|+++.++.
T Consensus 30 ~Gelr~lIGpNGAGKTT~mD~ItGKtrp~ 58 (249)
T COG4674 30 PGELRVLIGPNGAGKTTLMDVITGKTRPQ 58 (249)
T ss_pred CCeEEEEECCCCCCceeeeeeecccCCCC
Confidence 58999999999999999999999999753
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.40 E-value=3.2e-07 Score=58.74 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q psy4405 7 KTIALVGCQGVGRRTLKARLI 27 (91)
Q Consensus 7 ~~i~l~GpsGaGKsTl~~~L~ 27 (91)
++++|.||||+|||||++.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 400
>PLN03232 ABC transporter C family member; Provisional
Probab=98.39 E-value=8.2e-07 Score=70.74 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|.+.+++
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~ 669 (1495)
T PLN03232 642 VGSLVAIVGGTGEGKTSLISAMLGELSH 669 (1495)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 6999999999999999999999999864
No 401
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.38 E-value=2.6e-07 Score=57.14 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 9 IALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 9 i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
|+|+||+||||||+++.|.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999998874
No 402
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.38 E-value=4.6e-07 Score=56.94 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.+.|+|+||+||||||+++.|++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 56799999999999999999998763
No 403
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.38 E-value=4.5e-07 Score=58.47 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|..++|+|.||||||||+++|++..++
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGmi~P 65 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcccCC
Confidence 5678999999999999999999999974
No 404
>PRK06761 hypothetical protein; Provisional
Probab=98.38 E-value=7.7e-07 Score=60.15 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++++|.||+||||||+++.|...+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999999885
No 405
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.38 E-value=2.8e-07 Score=66.22 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||+||||++.+|+..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 406
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.37 E-value=3.8e-07 Score=58.16 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|+.++|+||||||||||+-.|+++..+
T Consensus 35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ 62 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGLDDP 62 (228)
T ss_pred CCceEEEEcCCCCcHHhHHHHHhcCCCC
Confidence 5889999999999999999999998853
No 407
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.37 E-value=4.4e-07 Score=56.54 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|-+|.|.|.+|||||||++.|...+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999988773
No 408
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.37 E-value=6.6e-07 Score=52.33 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhh
Q psy4405 9 IALVGCQGVGRRTLKARLINS 29 (91)
Q Consensus 9 i~l~GpsGaGKsTl~~~L~~~ 29 (91)
++|+|++|+|||||++.|++.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999975
No 409
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.37 E-value=1.7e-06 Score=55.04 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
++.++.+.|.|||||||++++|.+.+.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~ 48 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLF 48 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 567999999999999999999988874
No 410
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.37 E-value=3.8e-07 Score=57.05 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+|++||||||+++.|...+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998773
No 411
>PRK12288 GTPase RsgA; Reviewed
Probab=98.37 E-value=7.9e-07 Score=61.62 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++.+|+|+||+|||||++.|.....
T Consensus 205 ~ki~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred hCCEEEECCCCCCHHHHHHHhccccc
Confidence 46789999999999999999987653
No 412
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.36 E-value=4.5e-07 Score=67.35 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+|+||||||||++.|++.+++
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~~p 509 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTP 509 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5999999999999999999999999864
No 413
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.36 E-value=4.8e-07 Score=57.86 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 4 LKRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 4 ~~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.++.+++|+|+||||||||++.|...+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999998763
No 414
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.36 E-value=3.2e-07 Score=65.84 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCCCHHHHHH
Q psy4405 5 KRKTIALVGCQGVGRRTLKA 24 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~ 24 (91)
+|++++|+||||||||||++
T Consensus 31 ~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 31 SSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CCCEEEEECCCCCCHHHHHh
Confidence 69999999999999999999
No 415
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.35 E-value=2e-06 Score=56.91 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.++..+|+|+||+|||||++.|.....
T Consensus 119 ~~~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 119 QNRISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhhhhh
Confidence 457899999999999999999997653
No 416
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.35 E-value=4.5e-07 Score=72.09 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||+++|.+.+++
T Consensus 410 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 437 (1466)
T PTZ00265 410 EGKTYAFVGESGCGKSTILKLIERLYDP 437 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhccC
Confidence 5999999999999999999999999864
No 417
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=5.2e-07 Score=57.52 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.|++++|-||||+|||||+++|...|.
T Consensus 36 aGECvvL~G~SG~GKStllr~LYaNY~ 62 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSLYANYL 62 (235)
T ss_pred CccEEEeeCCCCCcHHHHHHHHHhccC
Confidence 689999999999999999999999985
No 418
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.35 E-value=3.8e-07 Score=61.28 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++|.|+||||||||+++|.+.++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 579999999999999999998885
No 419
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.35 E-value=4.5e-07 Score=73.97 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 1964 ~GEi~gLLG~NGAGKTTLlkmL~Gll~p 1991 (2272)
T TIGR01257 1964 PGECFGLLGVNGAGKTTTFKMLTGDTTV 1991 (2272)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6999999999999999999999999864
No 420
>PLN03140 ABC transporter G family member; Provisional
Probab=98.34 E-value=3.9e-07 Score=72.41 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||+++|++.+.
T Consensus 190 ~Ge~~~llGpnGSGKSTLLk~LaG~l~ 216 (1470)
T PLN03140 190 PSRMTLLLGPPSSGKTTLLLALAGKLD 216 (1470)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 599999999999999999999999985
No 421
>PRK06217 hypothetical protein; Validated
Probab=98.34 E-value=4.6e-07 Score=57.27 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.|+|+|++||||||++++|...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999874
No 422
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.34 E-value=5.4e-07 Score=61.51 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+|.|||||||+++.|.+.++
T Consensus 30 ~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 30 KGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 689999999999999999999999997
No 423
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.34 E-value=5.3e-07 Score=63.85 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||+||||+++.|+..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998753
No 424
>PLN03130 ABC transporter C family member; Provisional
Probab=98.33 E-value=1.3e-06 Score=70.13 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||+|||||||++.|.+.++.
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~ 669 (1622)
T PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELPP 669 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 6999999999999999999999999874
No 425
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.32 E-value=5e-07 Score=71.55 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||++.|++..+
T Consensus 788 ~Ge~~aI~G~sGaGKSTLL~~Lag~~~ 814 (1394)
T TIGR00956 788 PGTLTALMGASGAGKTTLLNVLAERVT 814 (1394)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999999875
No 426
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.32 E-value=6e-07 Score=61.55 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
++++++|+||||+||||++..|+..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 578999999999999999999998875
No 427
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.31 E-value=6.2e-07 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhhC
Q psy4405 9 IALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 9 i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
|+|.|++||||||+++.|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 428
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.31 E-value=7.5e-07 Score=58.07 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++|.||+||||||+++.|++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998764
No 429
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.30 E-value=6.8e-07 Score=57.60 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy4405 8 TIALVGCQGVGRRTLKARLI 27 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~ 27 (91)
+++|+||||||||||+++|.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999984
No 430
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.30 E-value=7.4e-07 Score=58.80 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 7 KTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 7 ~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.+.+|+||||||||||+++|...+.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~ 47 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLG 47 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999987663
No 431
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.30 E-value=4.5e-07 Score=62.15 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEcCCCCCHHHHHHHHHhhCCc
Q psy4405 11 LVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 11 l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
|+||||||||||+++|++.+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p 22 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP 22 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC
Confidence 6899999999999999999864
No 432
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.30 E-value=5.6e-07 Score=71.29 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||||||||++.|++..
T Consensus 86 ~Ge~~aIlG~nGsGKSTLLk~LaG~~ 111 (1394)
T TIGR00956 86 PGELTVVLGRPGSGCSTLLKTIASNT 111 (1394)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999999985
No 433
>PRK06696 uridine kinase; Validated
Probab=98.30 E-value=6.3e-07 Score=58.33 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
...+|+|.|++|||||||++.|...++
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999998874
No 434
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.29 E-value=6.9e-07 Score=56.79 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|.+|+|.|+.||||||+++.|.+.+.
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999988763
No 435
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.29 E-value=7.3e-07 Score=65.97 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++.++.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~ 60 (648)
T PRK10535 33 AGEMVAIVGASGSGKSTLMNILGCLDKP 60 (648)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 436
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.29 E-value=6.5e-07 Score=73.10 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||+++|++..++
T Consensus 955 ~Gei~aLLG~NGAGKSTLLkiLaGLl~P 982 (2272)
T TIGR01257 955 ENQITAFLGHNGAGKTTTLSILTGLLPP 982 (2272)
T ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCC
Confidence 6899999999999999999999999864
No 437
>PRK03839 putative kinase; Provisional
Probab=98.29 E-value=7.5e-07 Score=55.95 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.|+|+|++||||||++++|++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999874
No 438
>PLN03140 ABC transporter G family member; Provisional
Probab=98.28 E-value=6.5e-07 Score=71.22 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|++++|+||||||||||++.|++...
T Consensus 905 ~Gel~aL~G~sGaGKTTLL~~LaG~~~ 931 (1470)
T PLN03140 905 PGVLTALMGVSGAGKTTLMDVLAGRKT 931 (1470)
T ss_pred CCeEEEEECCCCCCHHHHHHHHcCCCC
Confidence 589999999999999999999999864
No 439
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.28 E-value=6.9e-07 Score=54.89 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 7 KTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 7 ~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+.+.|+||+|||||||+++|.+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 357899999999999999998765
No 440
>PRK06547 hypothetical protein; Provisional
Probab=98.28 E-value=1.2e-06 Score=55.30 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
..+++|.|++||||||+++.|.+.+.
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788889999999999999988764
No 441
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.28 E-value=9.5e-07 Score=54.50 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
...++|+||+|||||||+++|.+..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~ 38 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASED 38 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998863
No 442
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.28 E-value=7.5e-07 Score=54.28 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++|.|++||||||+++.|...+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC
Confidence 478999999999999999988753
No 443
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.28 E-value=7.1e-07 Score=55.98 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++|+||+||||||+++.|++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999874
No 444
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.27 E-value=7.5e-07 Score=56.02 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 7 KTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 7 ~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.+|+|.|+.||||||+++.|.+.+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998874
No 445
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.27 E-value=1.5e-06 Score=55.08 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCCcC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNPEK 33 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~~~ 33 (91)
|++|+|-|+|.||||||++.|...++..
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p 28 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEP 28 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCC
Confidence 6799999999999999999999999754
No 446
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.27 E-value=7.3e-07 Score=57.31 Aligned_cols=26 Identities=46% Similarity=0.539 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++++|+||+|+||||.+-.|+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 46899999999999999999987763
No 447
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=7.9e-07 Score=62.17 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|.+++|+||||+||||++..|+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998764
No 448
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=9.9e-07 Score=63.79 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+-++|+|+|||||||+++.|.+.+..
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~~~ 390 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAWDP 390 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhccCC
Confidence 7999999999999999999999988753
No 449
>PLN02796 D-glycerate 3-kinase
Probab=98.26 E-value=8.8e-07 Score=61.32 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 7 KTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 7 ~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
-+++|+||+|||||||++.|...+.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3589999999999999999998885
No 450
>PRK13949 shikimate kinase; Provisional
Probab=98.26 E-value=1e-06 Score=55.28 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
-|+|+|++||||||+.+.|++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998874
No 451
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.26 E-value=1.2e-06 Score=60.21 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.|++++|+|-||||||||+++|.++.++
T Consensus 53 ~GeIfViMGLSGSGKSTLvR~~NrLiep 80 (386)
T COG4175 53 EGEIFVIMGLSGSGKSTLVRLLNRLIEP 80 (386)
T ss_pred CCeEEEEEecCCCCHHHHHHHHhccCCC
Confidence 6999999999999999999999988864
No 452
>PTZ00243 ABC transporter; Provisional
Probab=98.26 E-value=2e-06 Score=68.86 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+|+||||||||++.|.+.+.+
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p 1362 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVEV 1362 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999999999864
No 453
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.26 E-value=9.5e-07 Score=61.47 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
++..++|+||+||||||+++.|++.+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999999876
No 454
>PRK12289 GTPase RsgA; Reviewed
Probab=98.25 E-value=1.7e-06 Score=60.10 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.+++++|+|+||+|||||++.|.....
T Consensus 171 ~~ki~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 171 RNKITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred ccceEEEEeCCCCCHHHHHHHHcCccc
Confidence 456899999999999999999987653
No 455
>PRK13975 thymidylate kinase; Provisional
Probab=98.25 E-value=1.2e-06 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+.+|+|.|+.||||||+++.|.+.+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999999999885
No 456
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.24 E-value=1.1e-06 Score=55.68 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLI 27 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~ 27 (91)
.|+.++|+||||+|||||++.|.
T Consensus 27 ~getlvllgpsgagkssllr~ln 49 (242)
T COG4161 27 EGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred CCCEEEEECCCCCchHHHHHHHH
Confidence 68999999999999999999764
No 457
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.24 E-value=1.1e-06 Score=55.61 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
|.+|+|.|+.||||||++++|.+.+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999998874
No 458
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.24 E-value=1e-06 Score=59.46 Aligned_cols=27 Identities=41% Similarity=0.468 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
++++++|+||+|+||||++..|+..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567999999999999999999987763
No 459
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.23 E-value=1e-06 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|+|.|++||||||+++.|+..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998763
No 460
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.23 E-value=1.4e-06 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 9 IALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 9 i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+.|.||+|+||||+++.|++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57899999999999999999874
No 461
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.23 E-value=9.4e-07 Score=53.06 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhh
Q psy4405 9 IALVGCQGVGRRTLKARLINS 29 (91)
Q Consensus 9 i~l~GpsGaGKsTl~~~L~~~ 29 (91)
++|+|++|||||||+++|.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999876
No 462
>PLN02200 adenylate kinase family protein
Probab=98.23 E-value=1.6e-06 Score=57.04 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+.+++|+||+||||||+++.|++.+.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998774
No 463
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.22 E-value=6.5e-06 Score=57.07 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.+..++|+||+||||||+++.|+...+.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 3567999999999999999999998874
No 464
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.22 E-value=1.4e-06 Score=54.76 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
..+.+|+||||+||||++.+|.-.+
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999886554
No 465
>PLN03232 ABC transporter C family member; Provisional
Probab=98.22 E-value=1.2e-06 Score=69.78 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+|+||||||||++.|.+.+++
T Consensus 1261 ~GekvaIVG~SGSGKSTL~~lL~rl~~p 1288 (1495)
T PLN03232 1261 PSEKVGVVGRTGAGKSSMLNALFRIVEL 1288 (1495)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 5999999999999999999999999864
No 466
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.22 E-value=1.5e-06 Score=54.05 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHh
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLIN 28 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~ 28 (91)
++++++|+||||+||||+++.+.-
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999998643
No 467
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.21 E-value=9.4e-08 Score=61.98 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+|||||||||..-++.++.++
T Consensus 29 ~GEiVGLLGPNGAGKTT~Fymi~Glv~~ 56 (243)
T COG1137 29 SGEIVGLLGPNGAGKTTTFYMIVGLVRP 56 (243)
T ss_pred CCcEEEEECCCCCCceeEEEEEEEEEec
Confidence 7999999999999999999999988864
No 468
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.21 E-value=1.4e-06 Score=58.55 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 7 KTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 7 ~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
++++++|++||||||+++.|...++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC
Confidence 5899999999999999999998874
No 469
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.21 E-value=1.6e-06 Score=50.58 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 9 IALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 9 i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
++|+|+.|+|||||++.|.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68899999999999999997764
No 470
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.20 E-value=1.5e-06 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|.+++|.|++|+||||+++.|.+.+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999998864
No 471
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.20 E-value=1.4e-06 Score=69.43 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.++.
T Consensus 451 ~G~~~~I~G~~GsGKSTLl~~l~G~~~~ 478 (1490)
T TIGR01271 451 KGQLLAVAGSTGSGKSSLLMMIMGELEP 478 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999999999864
No 472
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.20 E-value=1.3e-06 Score=55.84 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|+|.|++|||||||++.|...+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999874
No 473
>KOG0059|consensus
Probab=98.20 E-value=2.4e-06 Score=65.27 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++++|||||||||++++|.+..+.
T Consensus 590 ~gecfgLLG~NGAGKtT~f~mltG~~~~ 617 (885)
T KOG0059|consen 590 PGECFGLLGVNGAGKTTTFKMLTGETKP 617 (885)
T ss_pred CCceEEEecCCCCCchhhHHHHhCCccC
Confidence 5899999999999999999999999874
No 474
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.20 E-value=1.4e-06 Score=64.08 Aligned_cols=25 Identities=20% Similarity=0.499 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 7 KTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 7 ~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.+++|.||||||||||+++|.+.++
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCC
Confidence 4889999999999999999998875
No 475
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.20 E-value=1.5e-06 Score=56.36 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHH
Q psy4405 6 RKTIALVGCQGVGRRTLKARLI 27 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~ 27 (91)
++.++|.||||+|||||++.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3789999999999999999887
No 476
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.19 E-value=1.6e-06 Score=60.39 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+.++++|+||+|+|||||+++|...+.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998874
No 477
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.19 E-value=1.7e-06 Score=57.85 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHH
Q psy4405 5 KRKTIALVGCQGVGRRTLKARL 26 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L 26 (91)
.|.+++|.|+||||||||++.+
T Consensus 20 ~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 20 LGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred CCcEEEEECCCCCchHHHHHHH
Confidence 4899999999999999999865
No 478
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.18 E-value=2.2e-06 Score=50.54 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
.++.+.|.||+|+|||++++.+...+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999999876
No 479
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.18 E-value=1.7e-06 Score=69.10 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+||||||||||++.|++.++.
T Consensus 663 ~G~~v~IvG~~GsGKSTLl~~l~g~~~~ 690 (1522)
T TIGR00957 663 EGALVAVVGQVGCGKSSLLSALLAEMDK 690 (1522)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 6999999999999999999999999864
No 480
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.17 E-value=8.6e-06 Score=56.28 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+..++|+||+||||||+++.|...++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56899999999999999999988765
No 481
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.17 E-value=4.7e-06 Score=60.60 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+.++++++|++||||||+++.+....
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~ 393 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPA 393 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHc
Confidence 56799999999999999999998654
No 482
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.17 E-value=1.7e-06 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 9 IALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 9 i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
|+|+|++||||||+++.|+..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 483
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=98.17 E-value=1.3e-05 Score=55.32 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+.-++|+|++||||||+++.|+...|.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 557899999999999999999998874
No 484
>PLN03130 ABC transporter C family member; Provisional
Probab=98.17 E-value=1.9e-06 Score=69.17 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+.++|+|+||||||||++.|.+.+++
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~p 1291 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIVEL 1291 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 5899999999999999999999999864
No 485
>KOG0062|consensus
Probab=98.16 E-value=1.2e-06 Score=63.13 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHh
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLIN 28 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~ 28 (91)
.|+..+|+|+||+|||||+++|+.
T Consensus 105 ~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 105 RGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred cccccceeCCCCCcHHHHHHHHHh
Confidence 689999999999999999999987
No 486
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.16 E-value=2.4e-06 Score=54.97 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.++|+||+|||||||+++|.+.++.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCc
Confidence 6899999999999999999988753
No 487
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.16 E-value=2.3e-06 Score=55.25 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHh
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLIN 28 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~ 28 (91)
.+++++|.||||+||||+++.+..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998864
No 488
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.16 E-value=1.5e-06 Score=55.01 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+++|.|++|||||||++.|...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998863
No 489
>PRK14531 adenylate kinase; Provisional
Probab=98.15 E-value=2.5e-06 Score=53.93 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.|+|+||+||||||+++.|+..+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999998874
No 490
>PRK07429 phosphoribulokinase; Provisional
Probab=98.15 E-value=2.1e-06 Score=59.16 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.-+++|.|+|||||||+++.|.+.+.
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 34789999999999999999998875
No 491
>PTZ00243 ABC transporter; Provisional
Probab=98.15 E-value=2.1e-06 Score=68.74 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|++++|+||||||||||++.|++.++.
T Consensus 685 ~G~~~~IiG~nGsGKSTLL~~i~G~~~~ 712 (1560)
T PTZ00243 685 RGKLTVVLGATGSGKSTLLQSLLSQFEI 712 (1560)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 6899999999999999999999998863
No 492
>PRK13948 shikimate kinase; Provisional
Probab=98.15 E-value=3.2e-06 Score=53.84 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 6 RKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 6 g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+..|+|+|+.||||||+.+.|+..+.
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999998874
No 493
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=1.9e-06 Score=64.82 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhC
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSN 30 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~ 30 (91)
+|++++|+||||+||||++.+|+..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhH
Confidence 47899999999999999999999876
No 494
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.14 E-value=3e-06 Score=55.91 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
+|+|+|++||||||+++.|...+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988763
No 495
>PRK13946 shikimate kinase; Provisional
Probab=98.14 E-value=2.9e-06 Score=53.70 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 3 PLKRKTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 3 ~~~g~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
++..+.|+|+|++||||||+.+.|+..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 7 ALGKRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999998874
No 496
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.14 E-value=2.9e-06 Score=56.02 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 7 KTIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 7 ~~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.+++|.||+|+||||+++.+...+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998875
No 497
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.14 E-value=2.8e-06 Score=60.09 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
+|+++.|+|-|||||||+++.|.+.+.+
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~P 375 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQP 375 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCC
Confidence 7999999999999999999999999964
No 498
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.13 E-value=3.4e-06 Score=55.48 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 8 TIALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 8 ~i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
.|+|+||+||||||+++.|++.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 499
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.13 E-value=3.3e-06 Score=57.29 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhhCCc
Q psy4405 5 KRKTIALVGCQGVGRRTLKARLINSNPE 32 (91)
Q Consensus 5 ~g~~i~l~GpsGaGKsTl~~~L~~~~~~ 32 (91)
.+.++.|+|++|||||||++.|++.+..
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4678999999999999999999988753
No 500
>PRK14532 adenylate kinase; Provisional
Probab=98.13 E-value=2.5e-06 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCC
Q psy4405 9 IALVGCQGVGRRTLKARLINSNP 31 (91)
Q Consensus 9 i~l~GpsGaGKsTl~~~L~~~~~ 31 (91)
++|+||+||||||+++.|++.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999998874
Done!