RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4405
(91 letters)
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 85.3 bits (212), Expect = 1e-22
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSR 60
+ RKT+ L+G GVGR +K L++ NPEKF +PYTTRP R+ EE+G+ Y F S
Sbjct: 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFIST 73
Query: 61 E 61
E
Sbjct: 74 E 74
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 84.8 bits (211), Expect = 1e-22
Identities = 30/57 (52%), Positives = 42/57 (73%)
Query: 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
RKT+ L+G GVGRR +K LI +P++FA IP+TTRP ++ EENG+NY+F S +
Sbjct: 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHD 60
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 73.3 bits (180), Expect = 2e-17
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSR 60
+ + + ++G + + LI+ P+KF + +P+TTRP RE E +G++Y F S
Sbjct: 95 LSINYTRPVIILG---PLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSS 151
Query: 61 E 61
Sbjct: 152 R 152
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 72.9 bits (179), Expect = 3e-17
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWF-TS 59
M + I ++G + L++ P+KF + +P+TTRP RE E +G++Y F +S
Sbjct: 100 MEVHYARPIIILG---PTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSS 156
Query: 60 RE 61
RE
Sbjct: 157 RE 158
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 57.2 bits (137), Expect = 2e-11
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTS 59
M + I ++G + L++ P+KF + +P+TTRP RE E +G++Y F S
Sbjct: 526 MEVHYARPIIILG---PTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVS 581
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 55.6 bits (135), Expect = 3e-11
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
G G+ TL +L + F + +TTR R EE+G++Y+F +RE
Sbjct: 14 GAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTRE 59
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 54.8 bits (133), Expect = 6e-11
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
G G+ TL +L P+ F + TTR R E NG++Y F S +
Sbjct: 11 GTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVD 56
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 54.8 bits (133), Expect = 6e-11
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
GVG+ TL ++++ P +F I TTR RE E NG +Y+F ++
Sbjct: 22 GVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKD 67
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 54.4 bits (132), Expect = 7e-11
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
GVG+ T++ R+ + I TTR MRE E +G +Y+F +R+
Sbjct: 16 GVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRD 61
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 54.5 bits (132), Expect = 9e-11
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
GVG+ TL +L+N P F + TTR RE E+ G +Y+F +
Sbjct: 33 GVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKT 78
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 53.7 bits (130), Expect = 2e-10
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
GVG+ T++ + F I TTR RE E++G +Y+F SRE
Sbjct: 18 GVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSRE 63
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 51.8 bits (125), Expect = 9e-10
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
G G+ T+ +L+ + TTR R+ E+ G++Y+F RE
Sbjct: 37 GCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDRE 82
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 49.5 bits (119), Expect = 5e-09
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
VG+ T+ L P + TTR R E +G +Y F
Sbjct: 30 AVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPT 74
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 49.1 bits (118), Expect = 1e-08
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 16 GVGRRTLKARLINSNP-EKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
G G+ +L L+ + P + +TTR R E +G++Y+F + +
Sbjct: 26 GAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD 72
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 48.6 bits (117), Expect = 1e-08
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
G G+ +L L+ + E I +TTRP R ++ G +Y+F
Sbjct: 17 GAGKTSLVRALVKALAE-IKISISHTTRPKRPGDQEGVDYFFIDET 61
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 40.2 bits (93), Expect = 2e-05
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 11/67 (16%)
Query: 5 KRKTIALVGCQGVGRR---TLKARLINSNPEKFAAVIPYTTRPMREL-------EENGQN 54
+ + LVG G ++ L + +F I TR ++ N
Sbjct: 141 SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIS-ITRVTADISLAKRSVLNNPSK 199
Query: 55 YWFTSRE 61
+ R
Sbjct: 200 HAIIERS 206
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 34.0 bits (77), Expect = 0.003
Identities = 4/46 (8%), Positives = 12/46 (26%), Gaps = 4/46 (8%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
G + +L P+ + R+ + ++
Sbjct: 239 GPIADVAREKLAREEPDIYQ----IAKSEPRDAGTDQRSSGIIRLH 280
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 33.4 bits (75), Expect = 0.005
Identities = 4/46 (8%), Positives = 12/46 (26%), Gaps = 4/46 (8%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
G + +L P+ + R+ + ++
Sbjct: 231 GPIADVAREKLAREEPDIYQ----IAKSEPRDAGTDQRSSGIIRLH 272
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 27.9 bits (62), Expect = 0.38
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 19/62 (30%)
Query: 4 LKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREVN 63
L+ T+ + G VG+ TL L + PE +Y FT+R +N
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEI-------------------ASYPFTTRGIN 205
Query: 64 VG 65
VG
Sbjct: 206 VG 207
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 27.0 bits (60), Expect = 0.67
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 19/59 (32%)
Query: 7 KTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREVNVG 65
KTI L G VG+ + + +N + Q+Y FT++ + VG
Sbjct: 30 KTIILSGAPNVGKSSFMNIVSRANVDV-------------------QSYSFTTKNLYVG 69
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 26.9 bits (59), Expect = 0.92
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVI-----PYTTRPMRELEENGQNYWF 57
K + +VGC VG+ T R+I ++ VI P TT + ++ + ++ +
Sbjct: 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLY 216
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 26.7 bits (58), Expect = 1.2
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKF--AAVIPYTTRPMRELE 49
KR + L G +L P++F A + T P + ++
Sbjct: 141 EASFKRPVVIL----GPVADIAMQKLTAEMPDQFEIAETVSRTDSPSKIIK 187
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 26.1 bits (57), Expect = 1.5
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAV----IPYTTRPMRELEENGQNYWF 57
+ + +VGC VG+ T R+I K + P TT M E+ +
Sbjct: 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLY 217
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 26.0 bits (58), Expect = 1.7
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 7 KTIALVGCQGVGRRTLKARLI 27
T ALVG G G+ T+ A+L+
Sbjct: 47 TTCALVGHTGSGKSTI-AKLL 66
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 1.8
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 15/61 (24%)
Query: 4 LKR-KTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV 62
L+ K + + G G G+ + + S + + + + +W +
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYK--------------VQCKMDFKIFWLNLKNC 192
Query: 63 N 63
N
Sbjct: 193 N 193
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 25.9 bits (56), Expect = 1.9
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 8 TIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMR----ELEENGQNYWFT 58
I VG G+G+ TL L N+ E A ++ +L+E+ T
Sbjct: 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLT 98
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 25.3 bits (56), Expect = 2.6
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 45 MRELEENGQNYWFTSREV 62
R + E +N R +
Sbjct: 307 TRRIAERPENLLLVLRSL 324
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 25.4 bits (56), Expect = 2.6
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 1 MPPLKRKTI--ALVGCQGVGRRTLKARLINSNPEKF--AAV 37
+PP+ + I ALVGC + A + + ++ V
Sbjct: 6 IPPITDRKIRFALVGCGRIANNHFGA--LEKHADRAELIDV 44
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 25.4 bits (56), Expect = 2.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 2 PPLKRKTIALVGCQGVGRRT 21
P+ K I L G G G+ T
Sbjct: 101 EPIHSKYIVLFGSTGAGKTT 120
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 25.1 bits (54), Expect = 3.7
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 8 TIALVGCQGVGRRTL-----KARLINSNPEKFAAVIPYTTRP---MRELEENGQNYWFT 58
T+ +VG G+G+ TL L + + I T + ++E G T
Sbjct: 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 68
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 24.9 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 7 KTIALVGCQGVGRRTLKARLI 27
+T+ALVG G G+ T+ RL+
Sbjct: 81 QTLALVGPSGAGKSTI-LRLL 100
>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A,
PUTA, flavoenzyme, DNA-binding, FAD, flavoprotein,
multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A
{Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A*
1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A*
Length = 551
Score = 25.0 bits (54), Expect = 5.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 45 MRELEENGQNYWFTSREVN 63
+R L ENG N F +R +
Sbjct: 469 VRRLLENGANTSFVNRIAD 487
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 24.7 bits (55), Expect = 5.2
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 7 KTIALVGCQGVGRRTLKARLI 27
IA G G G+ T+ L+
Sbjct: 29 SIIAFAGPSGGGKSTI-FSLL 48
>3nqh_A Glycosyl hydrolase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.11A {Bacteroides thetaiotaomicron}
Length = 441
Score = 24.7 bits (53), Expect = 5.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 48 LEENGQNYWFTSREVNVGLAGTYIPMYHSE 77
+EENG+ Y F + + A Y S+
Sbjct: 30 VEENGRYYLFGEYKSDKSNAFPGFSCYSSD 59
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 24.6 bits (53), Expect = 5.8
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 4 LKRKTIALVGCQGVGRRTLKARLINSNPEK--FAAVIPYTTRPMRELEENG 52
+K K + + G GVG T +++ ++ ++ + + +E
Sbjct: 1 MKNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEEN 51
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 24.4 bits (52), Expect = 6.4
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 8 TIALVGCQGVGRRTL-----KARLINSNPEKFAAVIPYTTRP----MRELEENGQNYWFT 58
T+ +VG G+G+ TL L AA T E+EE G T
Sbjct: 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLT 79
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET:
NAD; 1.50A {Pseudomonas aeruginosa}
Length = 318
Score = 24.5 bits (53), Expect = 6.4
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 7 KTIALVGCQG-VGRRTLKARLINSNPEKFAAVI 38
K AL+G G + R ++A I +
Sbjct: 4 KNFALIGAAGYIAPRHMRA--IKDTGNCLVSAY 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 24.0 bits (53), Expect = 6.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 1 MPPLKRKTIALVGCQGVG 18
MP K + IA++G + VG
Sbjct: 1 MPQSKSRKIAILGYRSVG 18
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 24.3 bits (52), Expect = 6.7
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 7 KTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREVNVGL 66
+ + L G GVG+ TL + V + T +R + G+ F V L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVR---QGGRRIGFDV----VTL 54
Query: 67 AGTYIPMYHSEIRAYPPVEIPQI 89
+GT P+ + P ++
Sbjct: 55 SGTRGPLSRVGLEPPPGKRECRV 77
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 24.4 bits (52), Expect = 7.5
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 8 TIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMR---------ELEENGQNYWFT 58
T+ +VG G+G+ TL L ++ + + R E+EE G T
Sbjct: 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLT 98
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 24.0 bits (53), Expect = 9.5
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 7 KTIALVGCQGVGRRTLKARLI 27
+ I +VG G G+ TL +LI
Sbjct: 36 EVIGIVGRSGSGKSTL-TKLI 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,427,624
Number of extensions: 74776
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 44
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)