RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4405
(91 letters)
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 63.3 bits (153), Expect = 9e-15
Identities = 30/55 (54%), Positives = 41/55 (74%)
Query: 6 RKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSR 60
RKT+ L+G GVGRR +K LI +P++FA IP+TTRP ++ EENG+NY+F S
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSH 57
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 50.7 bits (120), Expect = 8e-10
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
+ L G G G+ TL +L + F + +TTR R EE+G++Y+F
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYF 51
>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of
Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 50.6 bits (120), Expect = 9e-10
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 16 GVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
G + L++ P+KF + +P+TTRP RE E +G++Y F
Sbjct: 16 GPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHF 57
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 47.2 bits (111), Expect = 1e-08
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 7 KTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSR 60
+ I + G G G+ TL +L P+ F + TTR R E NG++Y F S
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSV 55
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 44.1 bits (103), Expect = 2e-07
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 9 IALVGCQGVGRRTLKARLINSNPE-KFAAVIPYTTRPMRELEENGQNYWFTSRE 61
+ G G+ +L L+ + P + +TTR R E +G++Y+F + +
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD 58
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 39.2 bits (90), Expect = 1e-05
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 7 KTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSR 60
+ + L G VG+ T+ L P + TTR R E +G +Y F
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDP 55
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 31.6 bits (70), Expect = 0.006
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 8 TIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFT 58
TI G VG+ TL RL P TR + E+E
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGKKVR--RGKRPGVTRKIIEIEWKNHKIIDM 50
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 29.7 bits (66), Expect = 0.034
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAA----VIPYTTRPMRELEENGQNYWF 57
+A+ G G G+ + L E+ A V+ T N N F
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 111
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 28.2 bits (61), Expect = 0.092
Identities = 13/78 (16%), Positives = 24/78 (30%)
Query: 8 TIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREVNVGLA 67
T+ +VG VG+ TL +L+ T P+++ E + V
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61
Query: 68 GTYIPMYHSEIRAYPPVE 85
I + +
Sbjct: 62 PQDIISQKMKEVTLNMIR 79
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 28.4 bits (62), Expect = 0.094
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 6 RKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV 62
+ +I + G Q G+ +L L + V P + T +
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDS------VRPTVVSQEPLSAADYDGSGVTLVDF 53
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 28.2 bits (61), Expect = 0.094
Identities = 9/57 (15%), Positives = 16/57 (28%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
+P +A G G+ + L N + P T+ + E
Sbjct: 11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 67
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 28.0 bits (61), Expect = 0.11
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 8 TIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREV 62
+ LVG VG+ TL + + ++ P K A T P + E F ++
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADL 56
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 27.7 bits (60), Expect = 0.15
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFT 58
+ LVG G+ +L A + ++P K A T P + E + FT
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFT 52
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.7 bits (60), Expect = 0.15
Identities = 12/80 (15%), Positives = 20/80 (25%)
Query: 2 PPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
PP + + +VG GVG+ L + I S + +
Sbjct: 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDT 61
Query: 62 VNVGLAGTYIPMYHSEIRAY 81
G Y +
Sbjct: 62 AGQEEFGAMREQYMRAGHGF 81
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 27.6 bits (60), Expect = 0.19
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTT 42
I +VG VG+ T + + E A P+TT
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVE--IANYPFTT 34
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 27.4 bits (59), Expect = 0.20
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFT 58
+ I ++G G G+ T+ RL + IP + + +
Sbjct: 4 REMRILILGLDGAGKTTILYRLQV---GEVVTTIPTIGFNVETVTYKNLKFQVW 54
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 27.3 bits (59), Expect = 0.21
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 2 PPLKRK-TIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
P + +A+VG VG+ TL ++N + + T P+ + +
Sbjct: 3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV 59
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 27.0 bits (58), Expect = 0.26
Identities = 13/82 (15%), Positives = 22/82 (26%)
Query: 2 PPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
P IAL G VG+ + LIN + P T+ + N + ++
Sbjct: 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPG 78
Query: 62 VNVGLAGTYIPMYHSEIRAYPP 83
+
Sbjct: 79 YGFAKVSKSEREAWGRMIETYI 100
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.9 bits (58), Expect = 0.33
Identities = 13/78 (16%), Positives = 24/78 (30%)
Query: 7 KTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREVNVGL 66
+ + VG G+ L RL+ I ++ + G + + L
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 67 AGTYIPMYHSEIRAYPPV 84
+ + S RA V
Sbjct: 61 RFQLLDRFKSSARAVVFV 78
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 26.6 bits (58), Expect = 0.33
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 3 PLKRKT--IALVGCQGVGRRTLKARL 26
P++ K + +VG GVG+ T A+L
Sbjct: 1 PVEPKGRVVLVVGVNGVGKTTTIAKL 26
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 26.6 bits (57), Expect = 0.37
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFT 58
+ +G G+ TL L N ++ A + P T E N FT
Sbjct: 3 LLFLGLDNAGKTTLLHMLKN---DRLATLQP--TWHPTSEELAIGNIKFT 47
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 26.2 bits (57), Expect = 0.45
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 1 MPPLK-RKTIALVGCQGVGRRTLKARL 26
+P LK R LVG QG G+ T A+L
Sbjct: 4 LPVLKDRNLWFLVGLQGSGKTTTAAKL 30
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.1 bits (56), Expect = 0.57
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 4 LKRKTIALVGCQGVGRRTLKARLI-NSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
+++K + +VG G+ L + PE + + E++
Sbjct: 1 IRKK-LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 54
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.9 bits (56), Expect = 0.74
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARL 26
+PP I +VG G G+ T +L
Sbjct: 6 VPPEPPFVIMVVGVNGTGKTTSCGKL 31
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 25.8 bits (55), Expect = 0.79
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
IA+VG VG+ TL +L+ + T + + G
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAI 56
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 25.7 bits (55), Expect = 0.82
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 7 KTIALVGCQGVGRRTLKARL 26
K + + G GVG T
Sbjct: 2 KVVVVTGVPGVGSTTSSQLA 21
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 25.8 bits (55), Expect = 0.86
Identities = 9/71 (12%), Positives = 21/71 (29%)
Query: 5 KRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREVNV 64
K + +G G+ TL L + + + T+ + +
Sbjct: 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQAR 71
Query: 65 GLAGTYIPMYH 75
+ Y+P +
Sbjct: 72 RVWKNYLPAIN 82
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.5 bits (54), Expect = 0.89
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 8 TIALVGCQGVGRRTLKARLINSNP 31
+ + G G+ +L L
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREA 26
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 25.5 bits (54), Expect = 1.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 8 TIALVGCQGVGRRTLKARLINSN 30
+A+VG VG+ TL L+
Sbjct: 7 FVAIVGKPNVGKSTLLNNLLGVK 29
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 25.5 bits (55), Expect = 1.0
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 11/63 (17%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFA-----AVIP----YTTRPMREL--EENGQNYWF 57
I G QG G+ ++ N EK+ Y T + E+ N
Sbjct: 30 IFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 89
Query: 58 TSR 60
R
Sbjct: 90 QGR 92
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 25.2 bits (54), Expect = 1.1
Identities = 12/74 (16%), Positives = 24/74 (32%)
Query: 8 TIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREVNVGLA 67
TI ++G GVG+ + +I + RP+ +
Sbjct: 34 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 93
Query: 68 GTYIPMYHSEIRAY 81
G M + I+++
Sbjct: 94 GYINDMALNIIKSF 107
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 25.0 bits (53), Expect = 1.4
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFT 58
I +VG G+ T+ +L + IP + +E ++
Sbjct: 3 ILMVGLDAAGKTTILYKLKL---GEIVTTIPTIGFNVETVEYKNISFTVW 49
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.0 bits (53), Expect = 1.5
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 7 KTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMR 46
+ + L G GVG+ TL + V + T +R
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVR 41
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 24.9 bits (53), Expect = 1.5
Identities = 10/77 (12%), Positives = 23/77 (29%)
Query: 2 PPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSRE 61
P + I L+G G+ TL +L + + + + ++ + +
Sbjct: 12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQR 71
Query: 62 VNVGLAGTYIPMYHSEI 78
+Y I
Sbjct: 72 KIRPYWRSYFENTDILI 88
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 24.6 bits (52), Expect = 1.8
Identities = 3/37 (8%), Positives = 16/37 (43%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPM 45
+ ++G G+ T+ + + + + + + + +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTL 41
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 24.6 bits (52), Expect = 2.1
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 6 RKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
+K + G GVG+ T RL +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDE 53
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 24.6 bits (52), Expect = 2.1
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMR-ELEENGQNYWF 57
+ +VG VG+ TL RL+N + + T + E+ G +
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRI 52
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 24.4 bits (52), Expect = 2.5
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFT 58
I L+G GVG+ L R ++ +E NG+
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQ 57
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 23.9 bits (50), Expect = 2.9
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
+ +VG VG+ ++ R K R+++ N ++
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL 53
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 24.0 bits (51), Expect = 2.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARL 26
+P I LVG QG G+ T +L
Sbjct: 7 IPDKIPYVIMLVGVQGTGKATTAGKL 32
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 24.2 bits (51), Expect = 3.0
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 7 KTIALVGCQGVGRRTLKARLINSNPEKFAAVI 38
K + G GVG+ T+ A++ +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 23.9 bits (51), Expect = 3.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 9 IALVGCQGVGRRTLKARL 26
I +VG GVG+ T +L
Sbjct: 12 ILMVGVNGVGKTTTIGKL 29
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 24.0 bits (51), Expect = 3.1
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFT 58
+ LK I ++G GVG+ +L R + + A ++ + +G
Sbjct: 5 LTTLK---ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 59
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 24.1 bits (52), Expect = 3.2
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 8 TIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTT 42
+VG VG+ TL L + E AA P+ T
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGIE--AANYPFCT 36
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 23.9 bits (50), Expect = 3.2
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVI------PYTTRPMRELEENGQN 54
+ R + + G G+ TL +L + E+ +V R R N +
Sbjct: 17 IKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEW 76
Query: 55 YWF 57
+ +
Sbjct: 77 FEY 79
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 23.9 bits (50), Expect = 3.3
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREVNVGLAG 68
+ ++G GVG+ +L R +N +K++ T +E + + AG
Sbjct: 5 VIILGDSGVGKTSLMHRYVN---DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
Query: 69 TYIPMYHSE 77
Sbjct: 62 QERFQSLGV 70
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 23.7 bits (50), Expect = 3.6
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSR 60
M ++ +A+VG +GR K + + T + + + +
Sbjct: 1 MTNIR---VAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHAD 57
Query: 61 EVNVGLAGTYIPMYHSEIRA 80
+V+V E
Sbjct: 58 DVDVLFLCMGSATDIPEQAP 77
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 24.0 bits (51), Expect = 3.7
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNY 55
+ L+G GVG+ + R +R +E +G+
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI 55
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 23.8 bits (50), Expect = 3.8
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLIN 28
M K + +VG GVG+ L +LI
Sbjct: 1 MTEYK---LVVVGAGGVGKSALTIQLIQ 25
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 23.8 bits (50), Expect = 3.8
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLI-NSNPEKFAAVIPYTTRPMRELEENGQNYW--- 56
+ LK + L+G GVG+ ++ R + +S I + +N + +
Sbjct: 2 LRELK---VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 58
Query: 57 -FTSREVNVGLAGTYIPMYHSEIRAY 81
E LA Y + I Y
Sbjct: 59 DTAGLERFRALAPMYYRGSAAAIIVY 84
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 168
Score = 23.8 bits (51), Expect = 3.8
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVI 38
+A++G VG L + + +
Sbjct: 7 VAVIGAGVVGSAFL--DQLLAMKSTITYNL 34
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 23.5 bits (49), Expect = 4.2
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 5 KRKTIALVGCQGVGRRTLKARLIN 28
K + IA++G + VG+ +L + +
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVE 26
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 23.5 bits (49), Expect = 4.2
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 9 IALVGCQGVGRRTLKARLI-NSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
+ LVG G G+ T R + +K+ A + P+ G +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 55
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 23.5 bits (49), Expect = 4.4
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 4 LKRKTIALVGCQGVGRRTLKARLI-NSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
+K K I +VG G+ L + PE + + E++
Sbjct: 1 VKCK-IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 54
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 23.5 bits (49), Expect = 4.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 7 KTIALVGCQGVGRRTLKARL 26
KT+A++G + G+ L +L
Sbjct: 8 KTVAILGGESSGKSVLVNKL 27
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 23.4 bits (49), Expect = 4.8
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMR 46
+A G G+ TL +LI + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 42
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 23.5 bits (50), Expect = 5.0
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 6 RKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSREVNVG 65
RK I+++G VG T L + P + + + +V V
Sbjct: 1 RKKISIIGAGFVG-STTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 59
Query: 66 LAGTYIPMYHSEI 78
Y +S++
Sbjct: 60 GTNNYADTANSDV 72
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 23.3 bits (50), Expect = 5.0
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 5 KRKTIALVGCQGVGRRTLKARLIN 28
IA G G G+ T+ L+
Sbjct: 27 PNSIIAFAGPSGGGKSTI-FSLLE 49
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 226
Score = 23.4 bits (49), Expect = 5.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 5 KRKTIALVGCQGVGRR 20
KRK IAL+ G+G R
Sbjct: 1 KRKNIALIPAAGIGVR 16
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 23.4 bits (49), Expect = 5.1
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLIN 28
+P L+ + ++G G+ +L R +
Sbjct: 3 IPELR---LGVLGDARSGKSSLIHRFLT 27
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 23.3 bits (49), Expect = 5.4
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNY 55
+ L+G GVG+ L +R + + R ++ +G+
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 53
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
MoeB {Escherichia coli [TaxId: 562]}
Length = 247
Score = 23.4 bits (49), Expect = 5.6
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 4 LKRKTIALVGCQGVG 18
LK + +VG G+G
Sbjct: 28 LKDSRVLIVGLGGLG 42
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 23.2 bits (49), Expect = 5.7
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 5 KRKTIALVGCQGVGRRTLKARLINSNPEK 33
+ L G G G+ + ++ ++ + +
Sbjct: 43 DSFFLFLHGRAGSGKSVIASQALSKSDQL 71
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 23.3 bits (49), Expect = 5.7
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEE 50
+ + + +VG G L+ + + + R + L+E
Sbjct: 2 ITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDE 51
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 23.4 bits (49), Expect = 5.8
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLIN 28
M +K +VG VG+ L
Sbjct: 1 MQTIK---CVVVGDGAVGKTCLLISYTT 25
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 23.2 bits (48), Expect = 5.8
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
+ L+G GVG+ L A +T ++ +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMV 52
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 23.4 bits (49), Expect = 5.9
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 9 IALVGCQGVGRRTLKARLI-NSNPEKFAAVIPYTTRPMRELEENGQNYW 56
+ +G Q VG+ +L R + +S + A I E+
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRL 51
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 23.4 bits (49), Expect = 6.0
Identities = 11/90 (12%), Positives = 20/90 (22%), Gaps = 11/90 (12%)
Query: 4 LKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRE-----------LEENG 52
L + L G G G+ T+ L N + ++N
Sbjct: 2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNR 61
Query: 53 QNYWFTSREVNVGLAGTYIPMYHSEIRAYP 82
+ Y + +R
Sbjct: 62 MIMQIAADVAGRYAKEGYFVILDGVVRPDW 91
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 23.1 bits (49), Expect = 6.4
Identities = 7/65 (10%), Positives = 23/65 (35%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFTSR 60
M + ++G VG + A + ++ + ++ + + + F +
Sbjct: 1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPK 60
Query: 61 EVNVG 65
V++
Sbjct: 61 PVDIW 65
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 23.0 bits (48), Expect = 6.5
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 9 IALVGCQGVGRRTLKARLI-NSNPEKFAAVIPYTTRPMRELEENGQNYWF 57
+A+ G GVG+ +L R + + E + + T R + +++
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQI 54
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 22.9 bits (48), Expect = 6.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 7 KTIALVGCQGVGRRTLKARL 26
K I +G G G+ TL L
Sbjct: 1 KNIVFIGFMGSGKSTLARAL 20
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 22.7 bits (48), Expect = 7.3
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 9 IALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEE 50
+ ++G +G++ ++ L N I + L+E
Sbjct: 5 VLIIGMGNIGKKLVE--LGNFEKIYAYDRISKDIPGVVRLDE 44
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 23.1 bits (48), Expect = 7.4
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 1 MPPLKRKTIALVGCQGVGRRTLKARLINSNPEKFAA 36
MP +R A+VG + + A
Sbjct: 28 MPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEA 63
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 22.9 bits (49), Expect = 7.6
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 5 KRKTIALVGCQGVGRRTLKARLIN 28
+ + I +VG G G+ TL +LI
Sbjct: 28 QGEVIGIVGRSGSGKSTL-TKLIQ 50
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 22.9 bits (49), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 5 KRKTIALVGCQGVGRRTLKARLIN 28
KT+ALVG G G+ T+ A LI
Sbjct: 40 AGKTVALVGRSGSGKSTI-ASLIT 62
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 23.0 bits (48), Expect = 8.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 7 KTIALVGCQGVGRRTLKARL 26
+ I +VG +G G T+ L
Sbjct: 3 EPIFMVGARGCGMTTVGREL 22
>d1cfra_ c.52.1.7 (A:) Restriction endonuclease Cfr10I {Citrobacter
freundii [TaxId: 546]}
Length = 283
Score = 23.0 bits (49), Expect = 8.5
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 23 KARLINSNPEKFAAVIPYTTRPMRELEEN 51
LI SNP+ I ++ + ++
Sbjct: 125 NVNLITSNPDFSIIDIRGRREELKSMLKD 153
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 22.8 bits (49), Expect = 8.9
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 5 KRKTIALVGCQGVGRRTLKARLIN 28
K +T+A VG G G+ TL LI
Sbjct: 43 KGETVAFVGMSGGGKSTL-INLIP 65
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 22.8 bits (47), Expect = 9.0
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 6 RKTIALVGCQGVGRRTLKARLINSNPEKFAAVIPYTTRPMRELEENGQNYWFT 58
+K I +GC G G+ T I NP F + R E Y +T
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQSIMAHEERDEYKYT 53
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 22.6 bits (47), Expect = 9.1
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 9 IALVGCQGVGRRTLKARL 26
I +VG G+ + +L
Sbjct: 5 IVMVGLPARGKTYISKKL 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 347,389
Number of extensions: 14415
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 88
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)