BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4407
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
F C C + ++ H+ HIR HTGEKPF+C +C K A+ +H +H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
H+R HTGEKP+ C CEY AA+K++L H+ + H
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ C C+Y +A S + +H+R H+ E+PF C +C Y + S LT H+
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 70 CFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
C C +++ +K H+R HTG KP+ C C+Y AA S+L KH+
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 35 CKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE 93
CK C ++ D+ + H + S + RP F C C Y S S + H+R HTG+
Sbjct: 39 CKTC-DYAAADSSSLNKHLRIHSDE-RP-----FKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED 125
F C C A++ H+K H R HT EKP+ C LC ++ L +H K H + +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
F C C + ++ H+ HIR HTGEKPF+C +C K A+ +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+C+ + S++ HIR HTG+KPF C +C ++ +LT H+
Sbjct: 11 SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
F C C + ++ H+ HIR HTGEKPF+C +C K A+ +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
+C+ ++ + + HIR HTG+KPF C +C ++ +LT H+ + E PF
Sbjct: 11 SCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---THTGEKPF 63
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
F C C + ++ H+ HIR HTGEKPF+C +C K A+ +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+C+ ++ + HIR HTG+KPF C +C ++ +LT H+
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
F C C + ++ H+ HIR HTGEKPF+C +C K A+ +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
+C+ ++ + HIR HTG+KPF C +C ++ +LT H+ + E PF
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---THTGEKPF 63
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
F C C + ++ H+ HIR HTGEKPF+C +C K A+ +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
+C+ ++ + + HIR HTG+KPF C +C ++ +LT H+ + E PF
Sbjct: 11 SCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---THTGEKPF 63
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
F C C + ++ H+ HIR HTGEKPF+C +C K A+ +H
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
+C+ ++ + HIR HTG+KPF C +C ++ +LT H+ + E PF
Sbjct: 10 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT---HTGEKPF 62
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
F C C + ++ H+ HIR HTGEKPF+C +C K A+ +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
+C+ ++ + HIR HTG+KPF C +C ++ +LT H+ + E PF
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT---HTGEKPF 63
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKH 114
F C C+ ++ H+K H R HTGEKPFSC C+ K A+ L +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 73 CEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
CE ++ +K H R+HTG KPF C C+ K ++ +L H
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 81 SHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSK 117
SH++ H R+HTGEKP+ C CE + ++ L +H +
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 78 AKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSK 117
K SH+K H+R HTGEKP+ C C+++ A+ LT+H K
Sbjct: 28 TKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 63 DKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSK 117
+K Y T C++ A+ + H R+HTG KPF C +C ++ +L HM +
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKK 118
+ C C K S +K+HIR HT +P+ C C + K NLTKHM K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 64 KTYIFTC--FACEYHSAKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSK 117
+T TC C K SH+K H+R HTGEKP+ C C +K A+ LT+H K
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSK 117
C + A+ + H R+HTG +PF C C+ ++ +L HM +
Sbjct: 43 GCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 88
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 64 KTYIFTC--FACEYHSAKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSK 117
+T TC C K SH+K H+R HTGEKP+ C C +K A+ LT+H K
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSK 117
C + A+ + H R+HTG +PF C C+ ++ +L HM +
Sbjct: 42 GCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 79 KRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKH 114
K SH+K H R HTGEKPFSC CE + A+ L++H
Sbjct: 31 KSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 67 IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH--PSS 122
+FTC C+ +R ++ H+ HTGE P+ C C + +K +L HM K H PSS
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 83 IKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS 130
+K H R+HTGEKPF C C +K NL +H ++ + E F S
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCS 70
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
F C C + ++++ + HIR HTGEKPF+C +C K A T+H
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRH 81
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
+C+ ++++++ HIR HTG+KPF C +C +++++L H+ + E PF
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT---HTGEKPF 63
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 59 KLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
K+RP Y +C+ ++ + HIR HTG+KPF C +C ++ +LT H+
Sbjct: 16 KMRP---YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
F C C + ++ + + +HIR HTGEKPF+C +C K A +H
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRH 81
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
+C+ ++++++ HIR HTG+KPF C +C ++ + L +H+ + E PF
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT---HTGEKPF 63
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ C C ++ H+ EH R HTGEKP+ C C + K +LT+H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ C C ++ +H++ H R HTGEKP+ C C +++ NL H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ 153
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ C C ++R++++ H R HTGEKP++C C ++ ++L H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ 125
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ C C + + + H R HTGEKP+ C C ++++NL H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ 97
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ C C ++ ++ H R HTGEKP+ C C +++ L H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ C C ++ S + +H R HTGEKP+ CL C ++ S L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ C C ++ S++++H R HTGEKP+ C C ++ S+L KH
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQ 52
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ C C ++ S +++H R HTGEKP+ C C ++ +L++H
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQ 80
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 26/98 (26%)
Query: 52 HCKFCSYKLRPDKTYIFTCFACEYHSAKRSH----------------IKEHIRQHTGEKP 95
H CS +LRP K H+ ++ H +K H+R HTGEKP
Sbjct: 38 HWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP 97
Query: 96 FSCLLCEYKAAKK-----SNLTKHMSKKHPSSYEDPFF 128
+ +CE++ K S+ KH ++ H S E P+
Sbjct: 98 Y---MCEHEGCSKAFSNASDRAKHQNRTH--SNEKPYV 130
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 82 HIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFF 128
H+ H H+GEKP+SC +C + +K ++ H+ + H S P+
Sbjct: 22 HLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGSVGKPYI 67
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 58 YKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE--KPFSCLLCEYKAAKKSNLTKHM 115
+KL ++C C ++ + H+R H G KP+ C C ++ +L H+
Sbjct: 26 HKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
Query: 116 SKKH--PSS 122
+ H PSS
Sbjct: 86 KQVHSGPSS 94
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 78 AKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHM 115
A+ ++K H R HTGEKPF C C+ + A S+ KHM
Sbjct: 103 ARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 86 HIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSKKHPSSYEDPF 127
HIR HTGEKPF C C A+ NL H K + E PF
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIH---KRTHTGEKPF 121
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 65 TYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
T + C C ++S +K+H HTGEKP C +C ++ SNL H S+KH
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH-SRKH 80
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
F C C + S + H+ H+ +P+ C C + +KS++ KH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSK 117
KPF C LCEY KSNL HM++
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNR 31
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
F C CEY + +S++K H+ +H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 83 IKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
++ H R H ++PF C C + + SNL+KHM K H
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 17 SGLKVSEVD--FRFETEMLTCKYCYEFLPNDAEIIADH--CKFCSYKLRPDKTYIFTCFA 72
S L+V EV ++L C C E + DH CKFC KL K C
Sbjct: 4 SALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPL 63
Query: 73 CEYHSAKRSHIKEHIR 88
C+ KRS ++E R
Sbjct: 64 CKNDITKRS-LQESTR 78
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+ C C+ + ++ H HTGEKP+ C +C + + +NL H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 88 RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV 129
R HTGEKP++C C+ +K L H + Y DP FV
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR-----YHDPNFV 44
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
+ C C Y SA ++++ H+R+HTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSK 117
KP+ C C Y +A K+NL H+ K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRK 31
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 88 RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
R H+GEKP+ C +C + + + H+ +KH
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK--PFSCLLCEYKAAKKSNLTKHMSKKHPSSYED 125
+ C+ C + +K HI Q E F C C+ A+KS+L H+ K+H SY
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH--SYSG 73
Query: 126 P 126
P
Sbjct: 74 P 74
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 83 IKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHM 115
++ H+R HTG++P+ C C K A+ +NL H+
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 67 IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
+ C C + S +K H HTGEKPF C
Sbjct: 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
F C C H K ++ H R HT E+P++C +C ++ +L H ++ S E PF
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH---RYIHSKEKPF 74
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNL----TKHMSKKHPSS 122
+TC C ++ H+++H H+ EKPF C C + L T HM P++
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+ C C + S + +H R HTGEKP+ C C ++S+L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSKKH 119
CE H+ H HTGEK F+C C+ + K+N+ KH ++ H
Sbjct: 40 GCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL--LCEYKAAKKSNLTKH 114
K YI + C K ++ H+ +HTGEKPF C CE +LT+H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH 54
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 72 ACEYHSAKRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSKKH 119
CE H+ H HTGEK F+C C+ + K+N+ KH ++ H
Sbjct: 49 GCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL--LCEYKAAKKSNLTKH 114
K YI + C K ++ H+ +HTGEKPF C CE +LT+H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
F C C +R H+ +H R HTGEKP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMS 116
LRP + C C + H+ H++ HTG KP+ C +C + + + +H++
Sbjct: 35 LRP-----YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT 86
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 63 DKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
DK Y C H ++R H+ H G +P+ C +C K K +L HM
Sbjct: 8 DKLYPCQCGKSFTHKSQRD---RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 57
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSKKHP 120
K + C CEY++A SNL H+ KH
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHS 27
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 67 IFTCFACEYHSAKRSHIKEHIR-QHTGEK 94
+ C CEY SA S++K HI+ +H+ EK
Sbjct: 2 TYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
F C C+ ++ H+K H R HTGEK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
+ C C ++ SH++ H R HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 63 DKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKP 95
+K YI C C ++SH+ H R HTGEKP
Sbjct: 10 EKPYI--CNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 93 EKPFSCLLCEYKAAKKSNLTKHM 115
EKPFSC LC ++ S +TKH+
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHL 23
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
F C C + SH+ H R HTGEKP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSKKHP 120
K + C CE+++A SNL H+ KH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHS 27
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
+ C C A+++++ +H R HTGEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 93 EKPFSCLLCEYKAAKKSNLTKHM 115
EKP+ C C A+K+NLT+H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQ 32
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
+ C C + SH+ H R HTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
+ C C +++H+ +H + HTGEKP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase
Iii Alpha-Subunit
pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase
Iii Alpha-Subunit
Length = 1220
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKK 108
L+P + Y HI +IR+H G++P S E+ A+K
Sbjct: 682 LKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVS--YAEFPHAEK 728
>pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-Ray Structure Of Dna Polymerase Iii
pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-ray Structure Of Dna Polymerase Iii
Length = 1220
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKK 108
L+P + Y HI +IR+H G++P S E+ A+K
Sbjct: 682 LKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVS--YAEFPHAEK 728
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
F C C A++ H+K H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 65 TYIFTCFACEYHSAKRSHIKEHIRQHTGEKP 95
T C C +SH+ +H R HTGEKP
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
F C C ++RS + H + HTGEKP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
F C C + H+ H+R HTGEKP
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
+ C C+ A ++ H+R HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSKKH 119
K + C CE ++A SNL H+ KH
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKH 26
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSKKH 119
K + C CE ++A SNL H+ KH
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKH 26
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGEK 94
K +I C K SH++ H+R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
F C C+ +S++ H R HTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSKK 118
+P+ C C + K NLTKHM K
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMKSK 25
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 91 TGEKPFSCLLCEYKAAKKSNLTKHM 115
+GEKP+SC +C + +K ++ H+
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHV 30
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 67 IFTCFACEYHSAKRSHIKEHIRQHTGEKP 95
+F C C+ + S + H R HTGEKP
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
F C C+ +RS + H HTGEKP
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
+ C C ++ +H+ +H R HTGEKP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
F C C +RSH+ H+R H+ EK
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
F C C + S + H R HTGEKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
+ C C RS++ +H + HTGEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,861,782
Number of Sequences: 62578
Number of extensions: 137925
Number of successful extensions: 686
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 240
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)