RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4407
(130 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 59.4 bits (145), Expect = 3e-13
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
C C Y + ++ ++ H R H ++PF C C + + SNL+KHM KK
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKF 60
Score = 44.0 bits (105), Expect = 2e-07
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 88 RQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ P C C Y + K+ L H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHE 29
Score = 33.2 bits (77), Expect = 0.003
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
F C C + + + S++ +H+++ G+
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 52.4 bits (126), Expect = 2e-10
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHT---GEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYE 124
C C + +++ + H R+H F C C + K ++ H SK HP+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 125 DP 126
P
Sbjct: 68 AP 69
Score = 38.9 bits (91), Expect = 3e-05
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 90 HTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
+G C +C + +K++L H K + F
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRF 39
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 49.1 bits (118), Expect = 4e-09
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGE--KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED 125
+ C+ C + +K HI Q E F C C+ A+KS+L H+ K+H SY
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH--SYSG 73
Query: 126 PF 127
P
Sbjct: 74 PS 75
Score = 44.4 bits (106), Expect = 2e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 82 HIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
R H+GEKP+ C +C + + + H+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35
Score = 31.0 bits (71), Expect = 0.022
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 68 FTCFACEYHSAKRSHIKEHIR-QHTGEKPFS 97
F C C+ A++S + H+R QH+ P S
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 46.6 bits (110), Expect = 2e-08
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSK 117
+ C C K S +K+HIR HT +P+ C C + K NLTKHM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 30.1 bits (67), Expect = 0.045
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
+ C C + + ++ +H++ K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 47.1 bits (113), Expect = 2e-08
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
F C C + ++ H+ HIR HTGEKPF+C +C K A+ +H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMS 116
F C C A+ K H P E +K +L ++
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVA 79
Score = 24.8 bits (55), Expect = 5.9
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 68 FTCFACEYHSAKRSHIKEHI---RQHTGEK 94
E +K H++ + ++ GE+
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 47.1 bits (113), Expect = 2e-08
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHM 115
T+ C K SH+K H+R HTGEKP+ C C +K A+ LT+H
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Score = 41.7 bits (99), Expect = 3e-06
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 78 AKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
A+ + H R+HTG +PF C C+ ++ +L HM K+H
Sbjct: 48 ARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM-KRH 88
Score = 27.1 bits (61), Expect = 0.79
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 89 QHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ T C K S+L H+
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHL 27
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 46.3 bits (111), Expect = 3e-08
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
F C C A++ H+K H R HT EKP+ C LC ++ L +H K H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 45.8 bits (109), Expect = 7e-08
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ Y +C+ ++ + HIR HTG+KPF C +C ++ +LT H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 31.9 bits (73), Expect = 0.010
Identities = 6/41 (14%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 79 KRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSK 117
+++ ++ +P++C C+ + ++ LT+H+
Sbjct: 5 PMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRI 43
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 45.9 bits (110), Expect = 7e-08
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
F C C + ++ H+ HIR HTGEKPF+C +C K A+ +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 42.8 bits (102), Expect = 1e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 81 SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ HIR HTG+KPF C +C ++ +LT H+
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 28.6 bits (65), Expect = 0.25
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
F C C A+ K H + H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 45.1 bits (107), Expect = 1e-07
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 78 AKRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSKKH 119
K SH+K H R HTGEKPFSC CE + A+ L++H + H
Sbjct: 30 FKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR-RTH 72
Score = 27.7 bits (62), Expect = 0.39
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 80 RSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHM 115
S + + C C K S+L H
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHT 39
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 44.9 bits (107), Expect = 1e-07
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 68 FTCFACEYHSAKRSHIKEHIR--QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHP 120
+ C C S+ H K + C C + +K N+T H+ H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 36.0 bits (84), Expect = 2e-04
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 88 RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
GE + C +C SN +H H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 45.3 bits (108), Expect = 2e-07
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHM 115
+ + C K SH+K H+R HTGEKP+ C C+++ A+ LT+H
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Score = 44.2 bits (105), Expect = 4e-07
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 81 SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
+ H R+HTG KPF C +C ++ +L HM K+H
Sbjct: 61 DELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM-KRH 98
Score = 26.8 bits (60), Expect = 1.2
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 77 SAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
S E R H + P C K S+L H+
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHL 37
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 45.2 bits (108), Expect = 2e-07
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
FTC C+ +R ++ H+ HTGE P+ C C + +K +L HM K H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 41.0 bits (97), Expect = 1e-05
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
C C + ++K H R+HTGEKPF C C +K NL +H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE 55
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQ---HTGEKPFSCLLCEYKAAKKSNLTKHM 115
F C C ++ ++ EH + + E+ F+C +C+ ++ L HM
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86
Score = 33.6 bits (78), Expect = 0.005
Identities = 7/26 (26%), Positives = 8/26 (30%)
Query: 90 HTGEKPFSCLLCEYKAAKKSNLTKHM 115
+G C C K K L H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHN 27
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 43.4 bits (103), Expect = 6e-07
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 79 KRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSKKH 119
K + +K H HT + P+ C C+ + + S L +H K H
Sbjct: 15 KHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVH 56
Score = 41.5 bits (98), Expect = 4e-06
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 73 CEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
C+ + S +K H + H G C + + KH+++ H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 43.6 bits (104), Expect = 7e-07
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ +K H+R HTG KP+ C C+Y AA S+L KH+
Sbjct: 21 KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Score = 42.4 bits (101), Expect = 2e-06
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ C C+Y +A S + +H+R H+ E+PF C +C Y + S LT H+
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Score = 33.2 bits (77), Expect = 0.005
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
F C C Y S S + H+R HTG+ S
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 32.4 bits (75), Expect = 0.008
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 90 HTGEKPFSCLLCEYKAAKKSNLTKHM 115
P C +C ++K L HM
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHM 28
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 42.9 bits (102), Expect = 2e-06
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 81 SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+K H R+HTG KPF C C+ K ++ +L H
Sbjct: 52 DQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Score = 42.5 bits (101), Expect = 3e-06
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCE-YKA-AKKSNLTKHM 115
F C C+ ++ H+K H R HTGEKPFSC K A+ L +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 41.0 bits (97), Expect = 1e-05
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 79 KRSHIKEHIRQHTGEKPFSCLLCEY-KA-AKKSNLTKHM 115
K SH++ H R+HTGEKP+ C + + ++ L +H
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58
Score = 26.7 bits (60), Expect = 1.3
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 91 TGEKPFSC--LLCEYKAAKKSNLTKHM 115
+ ++PF C C + K S+L H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHS 28
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 42.6 bits (101), Expect = 4e-06
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 68 FTCFACEYHSAKR-----SHIKEHIRQHTGEKPFSCLLCE-YKA-AKKSNLTKHM 115
F C R + H+R+HTGEKP C K+ ++ NL H+
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 42.2 bits (100), Expect = 5e-06
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 81 SHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSKKH 119
++K H+R HTGEKP+ C C + S+ KH ++ H
Sbjct: 83 ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 37.6 bits (88), Expect = 3e-04
Identities = 10/56 (17%), Positives = 13/56 (23%), Gaps = 8/56 (14%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQ---HTGEKPFSCLLCEYKAAKK-----SNLTKHM 115
C + + HI H K F C + L HM
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 34.5 bits (80), Expect = 0.004
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 71 FACEYHS-----AKRSHIKEHI-RQHTGEKPFSCLLCE-YKA-AKKSNLTKHM 115
+ CE+ + S +H R H+ EKP+ C L K S+L KH+
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 27.2 bits (61), Expect = 1.2
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 93 EKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
E C + + L H++ +H F
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEF 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 40.0 bits (94), Expect = 4e-06
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
R TG KPF C C+ ++ +L H K+H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRH 34
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 40.9 bits (97), Expect = 6e-06
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
H+ H H+GEKP+SC +C + +K ++ H+
Sbjct: 20 VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV 55
Score = 36.3 bits (85), Expect = 3e-04
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGE--KPFSCLLCEYKAAKKSNLTKHMSKKH 119
++C C ++ + H+R H G KP+ C C ++ +L H+ + H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 32.1 bits (74), Expect = 0.012
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 90 HTGEKPFSCLLCEYKA-AKKSNLTKHM 115
+G +C +C K +L +H
Sbjct: 2 SSGSSGVACEICG-KIFRDVYHLNRHK 27
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 41.9 bits (99), Expect = 7e-06
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCE-YKA-AKKSNLTKHM 115
+ + HIR HTGEKPF C K A+ NL H
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 40.7 bits (96), Expect = 2e-05
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 78 AKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHM 115
A+ ++K H R HTGEKPF C C+ + A S+ KHM
Sbjct: 103 ARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 37.7 bits (88), Expect = 2e-04
Identities = 7/57 (12%), Positives = 13/57 (22%), Gaps = 9/57 (15%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKA---------AKKSNLTKHM 115
+C+ + + H+ P Y K L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Score = 33.4 bits (77), Expect = 0.008
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 81 SHIKEHI---RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
IK+ + + C+ + L H++ +H
Sbjct: 8 QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 32.3 bits (74), Expect = 0.022
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 81 SHIKEHIRQHTGEKPFSC 98
S K+H+ HT +K
Sbjct: 136 SDRKKHMHVHTSDKSGPS 153
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 40.6 bits (96), Expect = 1e-05
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCE-YKA-AKKSNLTKHM 115
C C + S +K H HTGEKPF C K + NL H+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 84
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 80 RSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHM 115
+++ H+R HTG++P+ C C K A+ +NL H+
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
S +++H+ H G + C C + S L +H
Sbjct: 20 NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ 54
Score = 30.6 bits (70), Expect = 0.060
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 78 AKRSHIKEHIRQHTGEKPF 96
A+ +++K HI H K
Sbjct: 105 AQSTNLKSHILTHAKAKNN 123
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 39.4 bits (93), Expect = 2e-05
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 81 SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
H H +KP+ C C+ K NL H
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK 37
Score = 38.6 bits (91), Expect = 3e-05
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ ++ H HTGEKP+ C +C + + +NL H
Sbjct: 30 KGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 28.6 bits (65), Expect = 0.19
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 80 RSHIKEHIRQHTGEKPF 96
+++K H R H+GEKP+
Sbjct: 58 PANLKTHTRIHSGEKPY 74
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 39.5 bits (93), Expect = 2e-05
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 78 AKRSHIKEHIR-QHTGEKPFSC--LLCEYKAAKKSNLTKHM 115
+ R ++ H + QH +K FSC C K +L +HM
Sbjct: 20 SNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Score = 36.8 bits (86), Expect = 2e-04
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 71 FACEYHS-----AKRSHIKEHIRQHTGEKPFSCLLC 101
F+C + + H+KEH++ H+ + + C
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 32.5 bits (75), Expect = 0.007
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 90 HTGEKPFSCLL--CEYKAAKKSNLTKHMSKKH 119
+G C C + + L H +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 38.4 bits (90), Expect = 2e-05
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 86 HIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSK 117
TGEKPF+C C ++ ++ L++H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 31.9 bits (73), Expect = 0.006
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 73 CEYHSAKRSHIKEHIRQHTGEKPFSC 98
C + ++ + H R H+G KP
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKPSGP 45
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 38.4 bits (89), Expect = 2e-05
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC 101
C C H+ H H+GEKP+S
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 39.7 bits (92), Expect = 3e-05
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 78 AKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ S K + TG F C C LT HM
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM 39
Score = 36.7 bits (84), Expect = 4e-04
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 70 CFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHP 120
+ ++ + E + +K C+ C + +L+ HM K
Sbjct: 55 NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 39.2 bits (91), Expect = 4e-05
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 70 CFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
C + + HIR HTGEK
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 27.6 bits (61), Expect = 0.57
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 9/57 (15%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQ-HTGEKPFSCLLCEYKA--------AKKSNLTKHM 115
+C+ + + H+ H G + +C ++ K L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Score = 26.9 bits (59), Expect = 0.93
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 76 HSAKRSHIKEHIR---QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
+ IK+ + + C+ + L H++ +H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 38.6 bits (91), Expect = 4e-05
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 78 AKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
Q + + C C + S+L+KH
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37
Score = 36.3 bits (85), Expect = 3e-04
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
S + +H R HTGEKP+ C C KA ++S+L H
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECG-KAFIQRSHLIGH 65
Score = 28.9 bits (66), Expect = 0.14
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 80 RSHIKEHIRQHTGEKPF 96
RSH+ H R HTG P
Sbjct: 59 RSHLIGHHRVHTGSGPS 75
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 39.0 bits (92), Expect = 4e-05
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+S H+ H G +P+ C +C K K +L HM
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 57
Score = 35.5 bits (83), Expect = 8e-04
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+ H+ H++ HTG KP+ C +C + + + +H+
Sbjct: 50 KHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 30.9 bits (71), Expect = 0.049
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLT 112
H + K + E + S +
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 28.2 bits (64), Expect = 0.34
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 88 RQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+G+K + C C KS +HM
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRHM 29
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 39.5 bits (93), Expect = 6e-05
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 78 AKRSHIKEHIRQHTGEKPFSC--LLCEYKA-AKKSNLTKHM 115
K + +K H HT + P+ C C+ K + S L +H
Sbjct: 117 KKHNQLKVHQFSHTQQLPYECPHEGCD-KRFSLPSRLKRHE 156
Score = 39.1 bits (92), Expect = 1e-04
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 80 RSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHM 115
H+ H HTGEK F+C C+ + K+N+ KH
Sbjct: 57 LHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94
Score = 38.0 bits (89), Expect = 2e-04
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 78 AKRSHIKEHIRQHTGEKPFSC--LLCEYKA-AKKSNLTKHM 115
K ++ H+ +HTGEKPF C CE K +LT+H
Sbjct: 25 NKNWKLQAHLCKHTGEKPFPCKEEGCE-KGFTSLHHLTRHS 64
Score = 33.0 bits (76), Expect = 0.013
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 78 AKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
+ S +K H + H G C + + KH+++ H
Sbjct: 147 SLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 32.6 bits (75), Expect = 0.017
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 80 RSHIKEHIRQHTGEK--PFSCLLCE-YKA-AKKSNLTKHM 115
++++K+H + K + C KA K + L H
Sbjct: 87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Score = 32.6 bits (75), Expect = 0.020
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 2/32 (6%)
Query: 86 HIRQHTGEKPFSCLLCE-YKA-AKKSNLTKHM 115
K + C + A K L H+
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHL 34
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 37.8 bits (89), Expect = 7e-05
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKHM 115
+S +K+H HTGEKP C +C KA ++ SNL H
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCG-KAFSQSSNLITHS 77
Score = 37.0 bits (87), Expect = 2e-04
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKHM 115
S + H+ H+ +P+ C C K +KS++ KH
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCG-KRFHQKSDMKKHT 49
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 39.0 bits (92), Expect = 9e-05
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
+ C C ++ +H++ H R HTGEKP+ C C K+ +++ NL H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG-KSFSREDNLHTH 152
Score = 37.8 bits (89), Expect = 2e-04
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
H+ EH R HTGEKP+ C C K+ + K +LT+H
Sbjct: 34 SDHLAEHQRTHTGEKPYKCPECG-KSFSDKKDLTRH 68
Score = 37.8 bits (89), Expect = 2e-04
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
R++++ H R HTGEKP++C C ++ ++L H
Sbjct: 90 RANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 37.4 bits (88), Expect = 4e-04
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 79 KRSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
+ ++ H R HTGEKP+ C C K+ +++ L H
Sbjct: 145 REDNLHTHQRTHTGEKPYKCPECG-KSFSRRDALNVH 180
Score = 37.0 bits (87), Expect = 5e-04
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
S GEKP++C C K+ ++ +L +H
Sbjct: 6 SSSSVAQAALEPGEKPYACPECG-KSFSRSDHLAEH 40
Score = 37.0 bits (87), Expect = 5e-04
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
+ + H R HTGEKP+ C C K+ ++++NL H
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECG-KSFSQRANLRAH 96
Score = 26.6 bits (60), Expect = 2.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 80 RSHIKEHIRQHTGEKP 95
R + H R HTG+K
Sbjct: 174 RDALNVHQRTHTGKKT 189
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 36.7 bits (86), Expect = 9e-05
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
GEKP+ C +C + L H+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 34.8 bits (81), Expect = 4e-04
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFS 97
+ C C +K H+R HTG P S
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 37.1 bits (87), Expect = 1e-04
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
S + +H R HTGEKP+ CL C ++ S L H
Sbjct: 27 SSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 85 EHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
H+GEKP+ C+ C ++ S L +H
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
Score = 27.8 bits (63), Expect = 0.34
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 80 RSHIKEHIRQHTGEKPF 96
S + H R HT
Sbjct: 55 NSGLINHQRIHTSGPSS 71
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 37.1 bits (87), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 82 HIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
R HTGEKP++C C+ +K L H
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHF 35
Score = 33.7 bits (78), Expect = 0.003
Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 80 RSHIKEHIRQHTGE----KPFSCLLCEYKAAKKSNLTKHM 115
+ + H +++ F C C +++ + +H
Sbjct: 28 KQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 33.3 bits (77), Expect = 0.003
Identities = 3/22 (13%), Positives = 5/22 (22%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLC 101
R+ + H G
Sbjct: 60 RNTMARHADNCAGPDGVEGENS 81
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 37.4 bits (86), Expect = 1e-04
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 68 FTCFACEYHSAKRSHIKEHIR-QHTG---EKPFSCLLCEYKAAKKSNLTKHMSKKHPSS 122
+ C C + + + H+ +H + C+ C + + L++H K HP
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE 77
Score = 36.3 bits (83), Expect = 4e-04
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV 129
H + + E + C C ++ + T H+ +HP+ + +V
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYV 52
Score = 30.1 bits (67), Expect = 0.076
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 34 TCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHI-RQHTG 92
CKYC F D + H + + +Y+ C C + + + + EH + H G
Sbjct: 20 ECKYC-TFQTPDLNMFTFHVDSEHPNVVLNSSYV--CVECNFLTKRYDALSEHNLKYHPG 76
Query: 93 EKPFSC 98
E+ F
Sbjct: 77 EENFKL 82
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 2e-04
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKPF C C+ KSNL H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 31.7 bits (73), Expect = 0.007
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
F C C+ +S++ H R HTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 37.0 bits (87), Expect = 2e-04
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
F C C H K ++ H R HT E+P++C +C KA ++ +L H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICH-KAFRRQDHLRDH 64
Score = 37.0 bits (87), Expect = 3e-04
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 80 RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKHM 115
+ H+++H H+ EKPF C C K + L H
Sbjct: 58 QDHLRDHRYIHSKEKPFKCQECG-KGFCQSRTLAVHK 93
Score = 36.6 bits (86), Expect = 3e-04
Identities = 9/34 (26%), Positives = 10/34 (29%)
Query: 81 SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
S +K F C C K NL H
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH 36
Score = 30.1 bits (69), Expect = 0.070
Identities = 2/19 (10%), Positives = 4/19 (21%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+ H H +
Sbjct: 86 SRTLAVHKTLHMQTSSPTA 104
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 2e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKPF C +C +S L +H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 32.1 bits (74), Expect = 0.004
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
RS + H HT EKP
Sbjct: 25 RSRLNRHSMVHTAEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.5 bits (83), Expect = 2e-04
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C+ KSNL H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 31.7 bits (73), Expect = 0.007
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+S++ H R HTGE S
Sbjct: 25 KSNLMVHQRTHTGESGPSS 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 35.6 bits (83), Expect = 2e-04
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
GEKP+ C C + + ++L H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 33.7 bits (78), Expect = 0.001
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 80 RSHIKEHIRQHTGEKPFS 97
+H++ H+ HTG P S
Sbjct: 24 VAHLRAHVLIHTGSGPSS 41
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 2e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C +KS L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 30.9 bits (71), Expect = 0.012
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 79 KRSHIKEHIRQHTGEKPFSC 98
++S + H + HTGE+
Sbjct: 24 RKSGLHIHQQSHTGERHSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 35.6 bits (83), Expect = 2e-04
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TG+KPF C C K NL H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 31.7 bits (73), Expect = 0.006
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
F C C + ++ H R HTGEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 3e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGE+P+ C +C +SNL KH
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 30.9 bits (71), Expect = 0.014
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
RS++ +H + HTGEKP
Sbjct: 25 RSNLIKHQKIHTGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 35.2 bits (82), Expect = 3e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TG KP+ C C + KS L H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 31.0 bits (71), Expect = 0.015
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+S + H R HTG KP
Sbjct: 25 KSQLIVHQRSHTGVKPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGE PF C C K+NL H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 30.9 bits (71), Expect = 0.015
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
F C C ++++ H + HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.3 bits (82), Expect = 3e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
TGEKPF C C + +L KH+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
Score = 30.2 bits (69), Expect = 0.025
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+ +H+R H P
Sbjct: 25 SCSLFKHLRSHERTDPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 4e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C A+K+NLT+H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 31.3 bits (72), Expect = 0.010
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
++++ +H R HTGEKP
Sbjct: 25 KANLTQHQRIHTGEKPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C +SNL H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 30.9 bits (71), Expect = 0.014
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
RS++ H + HTGEKP
Sbjct: 25 RSNLFTHQKIHTGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 34.9 bits (81), Expect = 4e-04
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
GEKP+ C C ++K +L H+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31
Score = 31.4 bits (72), Expect = 0.009
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFS 97
+ C C +++ + HIR HTG P S
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKPF C+ C +++S L H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 32.1 bits (74), Expect = 0.005
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
RS + H + HTGEKP
Sbjct: 25 RSALNVHHKLHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C KS L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 30.6 bits (70), Expect = 0.021
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 79 KRSHIKEHIRQHTGEKPFSC 98
+S ++ H + HTGE+
Sbjct: 24 WKSRLRIHQKCHTGERHSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKPF C C + S L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 30.9 bits (71), Expect = 0.012
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 79 KRSHIKEHIRQHTGEKPFSC 98
S + H R HTGEKP
Sbjct: 24 ISSQLATHQRIHTGEKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C K NL H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 30.6 bits (70), Expect = 0.016
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+ ++ H + HTGE+P
Sbjct: 25 KFNLDMHQKVHTGERPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 6e-04
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C KKS L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 31.0 bits (71), Expect = 0.012
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 79 KRSHIKEHIRQHTGEKPFSC 98
K+S + H R HTGE P
Sbjct: 24 KKSQLHVHQRIHTGENPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 6e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKP+ C C ++KS L+ H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 31.7 bits (73), Expect = 0.006
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+S + H R HTGEKP
Sbjct: 25 KSILSAHQRTHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 6e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C +KS+L +H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 32.1 bits (74), Expect = 0.005
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+SH+ H R HTGEKP
Sbjct: 25 KSHLNRHRRIHTGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 7e-04
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGE P+ C C ++K L H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 31.3 bits (72), Expect = 0.008
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+ + H R H GEKP
Sbjct: 25 KYQLISHQRTHAGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 7e-04
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C +SNL KH
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 30.9 bits (71), Expect = 0.012
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
RS++ +H + HT +KP
Sbjct: 25 RSNLIKHQKIHTKQKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 85 EHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGE+ + C C A+KS L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 30.5 bits (70), Expect = 0.020
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 79 KRSHIKEHIRQHTGEKPFSC 98
++S + H R HTGEKP
Sbjct: 24 RKSTLIMHQRIHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 7e-04
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C +C KKS L H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 31.4 bits (72), Expect = 0.009
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 79 KRSHIKEHIRQHTGEKPFSC 98
K+S + H + HTGEKP
Sbjct: 24 KKSQLHVHQQIHTGEKPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 7e-04
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
SH+ EH+++H EK
Sbjct: 25 HSHLIEHLKRHFREKSSGP 43
Score = 32.1 bits (74), Expect = 0.006
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
+GE+P+ C C + S+L +H+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHL 32
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKPF C+ C + L +H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 31.3 bits (72), Expect = 0.008
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+ +H R HTGEKP
Sbjct: 25 HIGLNQHRRIHTGEKPSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.1 bits (79), Expect = 8e-04
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 85 EHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
T K ++C C + +LT+H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 25.6 bits (57), Expect = 1.3
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
H+ H + HT + S
Sbjct: 25 IFHLTRHQKIHTRKSGPSS 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.1 bits (79), Expect = 8e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 85 EHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKPF C C + + S+L H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 32.9 bits (76), Expect = 0.003
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
F C C + SH+ H R HTGEKP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 8e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TG K F C C +KS L+ H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 31.3 bits (72), Expect = 0.011
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 79 KRSHIKEHIRQHTGEKPFSC 98
++S + H + HTGEKP
Sbjct: 24 RKSTLSMHQKIHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 8e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKPF C C + + S L H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 31.7 bits (73), Expect = 0.006
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
F C C + S + H R HTGEKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.1 bits (79), Expect = 8e-04
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKPF C C S H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 31.4 bits (72), Expect = 0.009
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S H R H+GEKP
Sbjct: 25 NSQCYSHQRSHSGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 8e-04
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+ EKP+ C C ++ NL H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 30.5 bits (70), Expect = 0.017
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
R ++ H R H GEK
Sbjct: 25 RLNLDMHQRVHMGEKTSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.1 bits (79), Expect = 8e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
GEKP+ C C + KS L H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 31.8 bits (73), Expect = 0.007
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
+ C C + +S++ H+R H+GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 8e-04
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C SNLT H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 30.9 bits (71), Expect = 0.015
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S++ H HTGEKP
Sbjct: 25 HSNLTTHQVIHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 9e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKPF C C ++ +LT+H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 32.1 bits (74), Expect = 0.005
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
R H+ +H R HTGEKP
Sbjct: 25 RVHLTQHQRVHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 9e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 85 EHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGE+ + C C +KS L+ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 31.0 bits (71), Expect = 0.011
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+S + H R H GEKP
Sbjct: 25 KSTLSMHQRIHRGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 9e-04
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKP+ C+ C ++ +L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 32.1 bits (74), Expect = 0.005
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
R + H R HTGEK
Sbjct: 25 RLDLDFHQRVHTGEKLSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 9e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEK ++C C ++ L KH
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 31.3 bits (72), Expect = 0.008
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+ +H R H+GEKP
Sbjct: 25 APCLLKHERLHSGEKPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 34.0 bits (79), Expect = 0.001
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKP+ C C KS L H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 31.7 bits (73), Expect = 0.008
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+S + H R H G S
Sbjct: 25 KSLLIVHERTHAGVSGPSS 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.001
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C +C S+LT H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 30.6 bits (70), Expect = 0.021
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S + H R HTGEKP
Sbjct: 25 GSSLTVHQRIHTGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.1 bits (79), Expect = 0.001
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C + +L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 31.0 bits (71), Expect = 0.012
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
R + H HTGEKP
Sbjct: 25 RRDLYTHHMVHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.001
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
G+K F C C+ + S+LT H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 30.9 bits (71), Expect = 0.016
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S + H R HTGEKP
Sbjct: 25 SSSLTVHQRIHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.001
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP++C C S L +H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 31.3 bits (72), Expect = 0.011
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S ++EH R HTGEKP
Sbjct: 25 DSQLQEHQRIHTGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.001
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
G P+ C CE + K L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 32.5 bits (75), Expect = 0.004
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 70 CFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
C CE + + + H R HT EKP
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.001
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C +C + + +L+ H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 31.3 bits (72), Expect = 0.010
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
R + H R H+G+KP
Sbjct: 25 RQSLSVHQRIHSGKKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.001
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TG++P+ C+ C KS+L H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 30.6 bits (70), Expect = 0.020
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+S + H R HTGEKP
Sbjct: 25 KSSLICHRRSHTGEKPSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 33.7 bits (78), Expect = 0.001
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
TG+KP+ C+ C + ++L +H H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 28.3 bits (64), Expect = 0.13
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 80 RSHIKEHIRQ-HTGEKPFSC 98
+ + H R HTGEKP
Sbjct: 25 NTSLIRHWRYYHTGEKPSGP 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C S L++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 31.7 bits (73), Expect = 0.007
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S++ H R HTGEKP
Sbjct: 25 NSYLSRHQRIHTGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C +C + ++LT+H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 31.7 bits (73), Expect = 0.007
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+ + +H R H+GEKP
Sbjct: 25 HASLTQHQRVHSGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TG KP+ C C KS L H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 32.5 bits (75), Expect = 0.003
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+S++ H R HTGE S
Sbjct: 25 KSYLIIHTRTHTGESGPSS 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 33.7 bits (78), Expect = 0.001
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQ-HTGEKPFSCLLC 101
+ C +C ++ H+ HI+Q HT E+P C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 29.1 bits (66), Expect = 0.069
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
+ KP+ C C ++ +L H+ + H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 85 EHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
TGEKP+SC +C ++L +H+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
Score = 32.1 bits (74), Expect = 0.004
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+H+ +H+R HT E
Sbjct: 25 SAHLNQHLRVHTQETLSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.001
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C +C +K++L +H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 32.9 bits (76), Expect = 0.003
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
++H+ +H + HTGEKP
Sbjct: 25 KAHLAQHQKTHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
GE+ C C + SN +H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 30.6 bits (70), Expect = 0.021
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S+ +H R HTGEKP
Sbjct: 25 ASNFIQHRRIHTGEKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
GEK + C +C + ++ S+L H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 32.5 bits (75), Expect = 0.003
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
SH++ H R HTGEKP
Sbjct: 25 SSHLQTHQRVHTGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C + S+L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 32.1 bits (74), Expect = 0.005
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
SH+ H R HTG KP
Sbjct: 25 NSHLANHQRIHTGVKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C+ C S+ T+H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 31.0 bits (71), Expect = 0.013
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S +H R HTG++P
Sbjct: 25 NSSCTQHQRLHTGQRPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C + +S+LT H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 31.7 bits (73), Expect = 0.008
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
RS + H HTG+KP
Sbjct: 25 RSSLTTHQAIHTGKKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 85 EHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C +C S+L +H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 31.7 bits (73), Expect = 0.007
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
SH+ +H H+GE+P
Sbjct: 25 SSHLVQHHSVHSGERPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C ++ S L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 31.3 bits (72), Expect = 0.010
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S + H R HTGEKP
Sbjct: 25 TSKLARHQRIHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP++C C S L KH
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 31.4 bits (72), Expect = 0.010
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S + +H R H+GEKP
Sbjct: 25 ASCLLKHQRVHSGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKP+ C C + L +H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 30.9 bits (71), Expect = 0.012
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+ + H R HTGEKP
Sbjct: 25 SAELVRHQRIHTGEKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C +S+L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 31.7 bits (73), Expect = 0.006
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
RS + H H+GEKP
Sbjct: 25 RSSLAIHQATHSGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.002
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKP+ C C + S+LT H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 32.1 bits (74), Expect = 0.004
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
SH+ H R HTGEKP
Sbjct: 25 NSHLTNHWRIHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP C C + S L H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 30.6 bits (70), Expect = 0.018
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S + H R HTGE P
Sbjct: 25 NSQLIVHQRIHTGENPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEK + C C ++ S L++H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 31.7 bits (73), Expect = 0.008
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S + +H + HTGEKP
Sbjct: 25 NSQLSQHQKIHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.002
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TG KP+ C C ++ S L +H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 31.0 bits (71), Expect = 0.011
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S + H R HTGEKP
Sbjct: 25 TSKLARHQRVHTGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.002
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TG KP+ C C + S+LT H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 30.2 bits (69), Expect = 0.026
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S + H HTGEKP
Sbjct: 25 YSSLTTHQVIHTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.002
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKP+ C C + ++L +H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 32.9 bits (76), Expect = 0.002
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+H+ EH R HTG +P
Sbjct: 25 HTHLNEHRRIHTGYRPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (76), Expect = 0.003
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+ K C C KS+L +H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 32.1 bits (74), Expect = 0.004
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+SH+ +H R HTGEKP
Sbjct: 25 KSHLNQHQRIHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.003
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKPF C C + +L H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 32.9 bits (76), Expect = 0.003
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
H+ H+R HTGEKP
Sbjct: 25 NIHLASHLRIHTGEKPSGP 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 34.5 bits (78), Expect = 0.003
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 65 TYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
F C C + +K+HIR E C +C+ + + H+ KKH
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH 124
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.003
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGE+P C C + ++L +H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 32.1 bits (74), Expect = 0.005
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+H+ +H R HTGEKP
Sbjct: 25 SAHLIQHQRIHTGEKPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.003
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
RSH+ H+R H+ EK
Sbjct: 25 RSHLAGHLRLHSREKSSGP 43
Score = 31.0 bits (71), Expect = 0.011
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GE+PF C C ++S+L H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (76), Expect = 0.003
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
GEK + C C+ ++ S+L H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 30.6 bits (70), Expect = 0.018
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S ++ H H GEKP
Sbjct: 25 ASSLRLHQNVHVGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.003
Identities = 11/29 (37%), Positives = 11/29 (37%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP C C KS L H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 30.6 bits (70), Expect = 0.018
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+S + H R H +K
Sbjct: 25 KSQLIMHQRTHVDDKHSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C + S+L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 32.1 bits (74), Expect = 0.005
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
SH+ H HTGEKP
Sbjct: 25 NSHLVRHRGIHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C + S+L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 31.7 bits (73), Expect = 0.007
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
SH+ H HTGEKP
Sbjct: 25 NSHLARHRGIHTGEKPSGP 43
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 32.5 bits (74), Expect = 0.003
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
GE PF C C+ +++ L +H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 26.7 bits (59), Expect = 0.46
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKP 95
F C C+ +R+++ +H R H +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.004
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
H+ +H R HTGE+
Sbjct: 25 IGHLNQHKRVHTGERSSGP 43
Score = 31.0 bits (71), Expect = 0.013
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+G+KP+ C C + +L +H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.004
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TG+KP+ C C + S+L +H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 32.1 bits (74), Expect = 0.005
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
SH+ H HTGEKP
Sbjct: 25 NSHLARHRGIHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.4 bits (75), Expect = 0.004
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C + S+L +H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 32.1 bits (74), Expect = 0.006
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
SH+ H HTGEKP
Sbjct: 25 NSHLARHQLIHTGEKPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 32.1 bits (74), Expect = 0.004
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
F C CE + +S++ H + H EKP
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 32.1 bits (74), Expect = 0.005
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 90 HTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKPF C CE + KS L H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH 29
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.004
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
SH+ H R HTG KP
Sbjct: 25 NSHLARHRRVHTGGKPSGP 43
Score = 32.1 bits (74), Expect = 0.005
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C + S+L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.1 bits (72), Expect = 0.004
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
+ C C Y SA ++++ H+R+HTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 31.0 bits (69), Expect = 0.011
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 91 TGEKPFSCLLCEYKAAKKSNLTKHMSK 117
+ KP+ C C Y +A K+NL H+ K
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRK 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 32.1 bits (74), Expect = 0.006
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
TGEKP+ C C ++ ++L +H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 31.7 bits (73), Expect = 0.006
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+H+ +H R HTGEKP
Sbjct: 25 TTHLIQHQRVHTGEKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 31.7 bits (73), Expect = 0.006
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+ + H R H GE S
Sbjct: 23 KDQLISHQRTHAGESGPSS 41
Score = 30.6 bits (70), Expect = 0.018
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 88 RQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GE P+ C C +K L H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.7 bits (73), Expect = 0.007
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 86 HIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
TGE P+ C C K ++K L H
Sbjct: 3 SGSSGTGENPYECCECG-KVFSRKDQLVSH 31
Score = 31.3 bits (72), Expect = 0.010
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+ + H + H+G+ S
Sbjct: 25 KDQLVSHQKTHSGQSGPSS 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.008
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
GEKP+ C C + LT+H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 31.0 bits (71), Expect = 0.015
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
+ +H HT EKP
Sbjct: 25 SYRLTQHWITHTREKPSGP 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 31.5 bits (72), Expect = 0.009
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 90 HTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEKP+SC C+ + + L +H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH 29
Score = 27.3 bits (61), Expect = 0.32
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
++C C+ + + + +H + HT + S
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 31.1 bits (71), Expect = 0.011
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
GE P+ C C ++ +L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 30.3 bits (69), Expect = 0.019
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFS 97
+ C C +R + H R + P S
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.018
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+GEK +C C S L H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 26.8 bits (60), Expect = 0.43
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 80 RSHIKEHIRQHTGEKPFSC 98
S ++ H R H GEK
Sbjct: 25 ISALRIHQRVHMGEKCSGP 43
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 30.2 bits (69), Expect = 0.025
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 88 RQHTGEKPFSCLLCEYKAAKKSNLTKH 114
+G++ + C C +K +LT H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 29.5 bits (67), Expect = 0.039
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 80 RSHIKEHIRQHTGEKPFS 97
+ + H R HTG P S
Sbjct: 23 KGSLTLHERIHTGSGPSS 40
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 29.6 bits (67), Expect = 0.033
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 78 AKRSHIKEHIRQHTGEK 94
K SH++ H+R HTGE+
Sbjct: 21 GKTSHLRAHLRWHTGER 37
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.7 bits (66), Expect = 0.034
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 90 HTGEKPFSCLLCEYKAAKKSNLTKHM 115
+G++PF C +C K+N +H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL 27
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 29.6 bits (67), Expect = 0.035
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
F C C A++ H+K H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.9 bits (66), Expect = 0.038
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSK 117
KPF C LCEY KSNL HM++
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNR 31
Score = 26.4 bits (57), Expect = 0.54
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
F C CEY + +S++K H+ +H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.4 bits (68), Expect = 0.046
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 81 SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMS 116
+ + H G++ C C ++S L++ +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT 39
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.1 bits (64), Expect = 0.073
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 90 HTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP 126
+GEKP+SC +C + +K ++ H+ S +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSG 41
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 28.7 bits (63), Expect = 0.093
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSKKH 119
K + C CE+++A SNL H+ KH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative
C-like transposable element, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Length = 73
Score = 27.9 bits (61), Expect = 0.31
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 93 EKPFSCLLCEYKAAKK---SNLTKHMSKKHPSSYED 125
K C +C + A SNL+ H+ K HP + +
Sbjct: 27 WKKIYCRICMAQIAYSGNTSNLSYHLEKNHPEEFCE 62
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 28.3 bits (62), Expect = 0.36
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 30 TEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQ 89
E+ C+ C L + E H + C C C +EH
Sbjct: 14 KEVYQCRLCNAKLSSLLEQ-GSHERLCRNA--------AVCPYCSLRFFSPELKQEH-ES 63
Query: 90 HTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
K +CL C ++ +H + H
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.7 bits (59), Expect = 0.43
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSKKHPSS 122
K ++C LC ++ L +H K H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN 29
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.9 bits (61), Expect = 0.46
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 68 FTCFACEYHSAKR-SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP 126
+C C+ K +K+H+ ++ F+C C + + + H+ H S P
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGP 93
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 27.6 bits (60), Expect = 0.60
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 68 FTCFACEYHSAKRSH-IKEHI-RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSS 122
C C + K +K+H+ + C C + K+ L H +H +
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 27.2 bits (60), Expect = 0.96
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 92 GEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
G + CL C+ A H +H
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEH 39
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 25.1 bits (54), Expect = 1.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 93 EKPFSCLLCEYKAAKKSNLTKHM 115
EKPFSC LC ++ S +TKH+
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHL 23
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 1.7
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 9/32 (28%)
Query: 33 LTCKYCYEFLPNDAEIIADH------CKFCSY 58
LTC C + P I+ C C
Sbjct: 22 LTCPECKVYPPK---IVERFSEGDVVCALCGL 50
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 25.1 bits (54), Expect = 1.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 70 CFACEYHSAKRSHIKEHIRQHTGEK 94
C C + S + H+RQHTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 25.2 bits (55), Expect = 2.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 62 PDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEK 94
PDKT+ C +R +I+ HI+ H ++
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 26.7 bits (60), Expect = 2.2
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 33 LTCKYCYEFLPNDAEIIADHCKFCSYKLRPD 63
+C +E C C LRP
Sbjct: 125 TSCNNSFEVESAPKIPPLPKCDKCGSLLRPG 155
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 2.3
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEK 94
IFTC C + ++ H+R HT EK
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex,
recombination; HET: DNA; 2.80A {Vibrio cholerae o1
biovar eltor str}
Length = 320
Score = 26.4 bits (59), Expect = 3.2
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 5 PRSYYVLFLFYSSGLKVSEV------DFRFETEMLTC 35
P+ + L Y SGL++ E D F+ +
Sbjct: 120 PKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRI 156
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination;
2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Length = 290
Score = 25.9 bits (58), Expect = 4.7
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 11 LFLFYSSGLKVSEV------DFRFETEMLTC 35
L + Y++GL+VSE+ D ++
Sbjct: 137 LEVLYATGLRVSELVGLTMSDISLRQGVVRV 167
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 23.6 bits (50), Expect = 4.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
+ C C+ A ++ H+R HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 24.0 bits (51), Expect = 5.8
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 93 EKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP 126
+KP++C +C + + L+ H + H + E
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGE 38
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 25.2 bits (56), Expect = 6.8
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 33 LTCKYCYEFLPNDAEIIADHCKFCSYKLRPD 63
++ + HC LRP
Sbjct: 117 SQSGQVLDWTGDVTPEDKCHCCQFPAPLRPH 147
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 25.1 bits (54), Expect = 8.8
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 6 RSYYVL----FLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLR 61
+ ++ + +++ L F + P + H +
Sbjct: 288 KRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQ--GHHWPHGITIVT 345
Query: 62 PDKTYIFTC 70
PD+ ++F C
Sbjct: 346 PDRKFLFAC 354
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop,
lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli}
SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Length = 327
Score = 24.9 bits (55), Expect = 9.0
Identities = 7/17 (41%), Positives = 7/17 (41%)
Query: 54 KFCSYKLRPDKTYIFTC 70
KF Y L DK Y
Sbjct: 77 KFSQYLLDSDKRYRVIA 93
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 25.3 bits (55), Expect = 9.5
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 35 CKYCYEFLPNDAEIIADHCK--FCSYKLRPDKTYIFTCFACEYHSAKRSH--IKEHIRQH 90
C YC I + CK FC+ K ++I H H + H
Sbjct: 14 CAYCGIDSAK-CVIKCNSCKKWFCNTKNGTSSSHIV------NHLVLSHHNVVSLHPDSD 66
Query: 91 TGEKPFSCLLCEYK 104
G+ C C K
Sbjct: 67 LGDTVLECYNCGRK 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.433
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,925,292
Number of extensions: 97179
Number of successful extensions: 750
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 371
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)