RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4407
(130 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 43.8 bits (104), Expect = 6e-08
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 88 RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
R H+GEKP+ C +C + + + H+ +KH
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 23.4 bits (51), Expect = 2.2
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
+ C+ C + +K HI Q E
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 40.5 bits (95), Expect = 1e-06
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
R TG KPF C C+ ++ +L H K+H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRH 34
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 40.1 bits (94), Expect = 1e-06
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
Q + + C C + S+L+KH
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHR 32
Score = 29.0 bits (65), Expect = 0.026
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGE 93
+ C C + S + +H R HTGE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 40.0 bits (94), Expect = 1e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 88 RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSY 123
R HTGEKP++C C+ +K L H + H ++
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 36
Score = 25.4 bits (56), Expect = 0.44
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
+ C C+ ++ + H +++
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 38.0 bits (89), Expect = 7e-06
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 90 HTGEKPFSCLLCEYKAAKKSNLTKHM 115
H+GEKP+ C+ C ++ S L +H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQ 27
Score = 28.7 bits (65), Expect = 0.023
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGE 93
+ C C ++ S + +H R HTGE
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 35.1 bits (81), Expect = 1e-04
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 65 TYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
++ AC + H+KEH++ H+ + + C
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 34.6 bits (80), Expect = 2e-04
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQ-HTGEKPFSC 98
+ C +C ++ H+ HI+Q HT E+P C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 31.5 bits (72), Expect = 0.003
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 91 TGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
+ KP+ C C ++ +L H+ + H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 33.0 bits (75), Expect = 8e-04
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 77 SAKRSHIKEHIRQHTGEKPFSCLLCE--YKAAKKSNLTKHM 115
+ R I ++++ +K F CL ++ N+ H+
Sbjct: 1 TLPRGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHI 40
Score = 31.4 bits (71), Expect = 0.004
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 63 DKTYIFTCFACEYHSAKRSHIKEHIRQHTGEK 94
DKT+ C +R +I+ HI+ H ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 32.0 bits (73), Expect = 0.002
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 90 HTGEKPFSCLLCEYKAAKKSNLTKHM 115
+G++PF C +C K+N +H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL 27
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 31.9 bits (73), Expect = 0.002
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
F C C + H+ +HI+ H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 28.1 bits (63), Expect = 0.046
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHM 115
K F+C C + + +L+KH+
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI 22
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 30.8 bits (70), Expect = 0.004
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGEK 94
+ ++ T C + ++ H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 22.7 bits (49), Expect = 3.7
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 94 KPFSCLL--CEYKAAKKSNLTKHM 115
+PF C C + + L +H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK 24
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 30.7 bits (70), Expect = 0.005
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
F C C A++ H+K H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.4 bits (59), Expect = 0.19
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHM 115
+ F C +C A++ +L +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 30.4 bits (68), Expect = 0.008
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 73 CEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
C +S H+ H G +P+ C +C K K +L HM
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 29.7 bits (66), Expect = 0.012
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSKKH 119
K + C CE+++A SNL H+ KH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
Score = 22.0 bits (46), Expect = 8.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 68 FTCFACEYHSAKRSHIKEHIR-QHTGEK 94
+ C CE+ SA S++K HI+ +H+ EK
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 28.3 bits (64), Expect = 0.035
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 93 EKPFSCLLCEYKAAKKSNLTKHM 115
+KPF C +C ++ +LT H+
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHI 23
Score = 24.9 bits (55), Expect = 0.64
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTG 92
F C C + ++ H+ HIR HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 28.0 bits (62), Expect = 0.041
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHMSKKH 119
+PF C C + + SNL+KHM K H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFH 26
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 26.5 bits (59), Expect = 0.14
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGE 93
K + T C ++ ++K H+R HTGE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 21.9 bits (47), Expect = 7.0
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 94 KPFSC--LLCEYKAAKKSNLTKHM 115
KP C C ++ NL H+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHL 24
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 26.5 bits (58), Expect = 0.17
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 93 EKPFSCLLCEYKAAKKSNLTKHM 115
E+PF C +C Y + S LT H+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHL 23
Score = 25.0 bits (54), Expect = 0.58
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGE 93
F C C Y S S + H+R HTG+
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 26.0 bits (57), Expect = 0.25
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
+ C C + K S +K+HIR HT +
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDVR 28
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 25.5 bits (56), Expect = 0.38
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 95 PFSCLLCEYKAAKKSNLTKHMSKKHPSSYED 125
P+ C LC ++ L +H K H + +
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 31
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.3 bits (55), Expect = 0.44
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 95 PFSCLLCEYKAAKKSNLTKHMSKK 118
P+ C C + K NLTKHM K
Sbjct: 1 PYHCTYCNFSFKTKGNLTKHMKSK 24
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.1 bits (54), Expect = 0.55
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 94 KPFSCLLCEYKAAKKSNLTKHM 115
KP+ C C+Y AA S+L KH+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHL 23
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 24.7 bits (53), Expect = 0.78
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 67 IFTCFACEYHSAKRSHIKEHIRQHTGE 93
+FTC C+ +R ++ H+ HTGE
Sbjct: 4 VFTCSVCQETFRRRMELRLHMVSHTGE 30
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.3 bits (53), Expect = 1.1
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGE 93
K + T C + +++ H+R HTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 23.8 bits (52), Expect = 1.5
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 64 KTYIFTCFACEYHSAKRSHIKEHIRQHTG 92
+ Y +C+ ++ + + HIR HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 23.8 bits (51), Expect = 1.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 93 EKPFSCLLCEYKAAKKSNLTKHM 115
EKP+SC +C + +K ++ H+
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHV 23
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 25.4 bits (56), Expect = 2.2
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 53 CKFCSYKL--RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPF 96
F +K+ +++ +F CFA + + HI E TG +PF
Sbjct: 196 ASFAQFKMEGNAEESTLF-CFAVRGQAGGKLHIIEVGTPPTGNQPF 240
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 24.8 bits (54), Expect = 2.5
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 93 EKPFSCLLCEYKAAKKSNLTKHMSKKH 119
+ CL C+ A H +H
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEH 39
>d2ghfa1 g.37.1.1 (A:45-102) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 23.7 bits (51), Expect = 2.6
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 96 FSCLLCEYKAAKKSNLTKHMSKKHPS 121
+ C+ C + + L++H K HP
Sbjct: 7 YVCVECNFLTKRYDALSEHNLKYHPG 32
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 24.4 bits (52), Expect = 2.9
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 5/72 (6%)
Query: 53 CKFCSYKLRPDKTYIFTCFACE--YHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSN 110
C C + C C YH + + C C + + +
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA- 77
Query: 111 LTKHMSKKHPSS 122
+ K PSS
Sbjct: 78 --QKNQKSGPSS 87
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 22.9 bits (49), Expect = 3.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 93 EKPFSCLLCEYKAAKKSNLTKHM 115
EKPF+C +C K A+ +H
Sbjct: 1 EKPFACDICGRKFARSDERKRHT 23
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 24.1 bits (52), Expect = 4.7
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 6/78 (7%)
Query: 32 MLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHT 91
Y +DA+ + K YH+ +++ + + Q
Sbjct: 29 FYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAV-ENYLAKLVNQG- 86
Query: 92 GEKPFSCLLCEYKAAKKS 109
S +CE +
Sbjct: 87 ----ESVAICEQIGDPAT 100
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 22.3 bits (48), Expect = 4.9
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 63 DKTYIFTCFACEYHSAKRSHIKEHIRQHTGE 93
D+ Y C+ + + H + H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 22.3 bits (47), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 82 HIKEHIRQHTGEKPFS 97
H+ H H+GEKP+S
Sbjct: 20 HLNRHKLSHSGEKPYS 35
>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 87
Score = 23.7 bits (50), Expect = 5.5
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 50 ADHCKFCSYKLRPDKTYIFTCFA 72
D F L Y + A
Sbjct: 48 VDSTSFILRGLDAGTEYTISLVA 70
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId:
7227]}
Length = 54
Score = 22.4 bits (47), Expect = 7.8
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 93 EKPFSCLLCEYKAAKKSNLTKHMSKKH 119
E+P +C +C + NL +H+ +H
Sbjct: 22 EQPATCPICYAVIRQSRNLRRHLELRH 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.136 0.433
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 494,323
Number of extensions: 21986
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 77
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.3 bits)