BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4409
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK 135
+ C C D+ RH R HTGEKP+KC C + F+Q +L+ H R HT G+
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HT---GEKP 105
Query: 136 QESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHL 195
C C ++ L L H + G Y C C + +++ H
Sbjct: 106 -----YACPECGK-SFSQLAHLRAHQRTHTG------EKPYKCPECGKSFSREDNLHTHQ 153
Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRH 222
R HT +KPY+C C FSRRD L H
Sbjct: 154 RTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK 135
+ C C RS + H R HTGEKP+KC C + F+ L H R HT
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HT------- 73
Query: 136 QESTRIY-CTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRH 194
+ Y C C ++ L H + G Y C C Q ++ H
Sbjct: 74 --GEKPYKCPECGK-SFSQRANLRAHQRTHTG------EKPYACPECGKSFSQLAHLRAH 124
Query: 195 LRKHTKDKPYECGFCSLKFSRRDNLRRH 222
R HT +KPY+C C FSR DNL H
Sbjct: 125 QRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI----QCRYSILKLQSHEES 56
+ RH R H+GEKPY C C + +++ H + EK +C S +L +
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL-----A 119
Query: 57 LVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN 116
++ +R +P + C C R ++ H R HTGEKP+KC C + F++
Sbjct: 120 HLRAHQRTHTGEKP-----YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174
Query: 117 VSLQTHIRI 125
+L H R
Sbjct: 175 DALNVHQRT 183
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
+ H R H+GEKPY C C + + H + EK K S +L H
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Query: 61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
+R +P + C C + +R H R HTGEKP+KC C + F++ +L
Sbjct: 97 -QRTHTGEKP-----YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLH 150
Query: 121 THIRI 125
TH R
Sbjct: 151 THQRT 155
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
+VC VC + E +KRH R HT +KPY CG C+ F+RRD L RH + HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQ 133
+F C VC R ++RH R HT EKP+ C C + FT+ L H + H+ G+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI 41
++RH R H+ EKPY C CN + L I+H +KI
Sbjct: 18 LKRHYRSHTNEKPYPCGLCN-----RAFTRRDLLIRHAQKI 53
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 31/123 (25%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
++ H RKH+GEKP+ C C K +E+L++H
Sbjct: 23 LKVHNRKHTGEKPFECPKCG----------------------------KCYFRKENLLEH 54
Query: 61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
R + FTC VC R +++R H+ HTGE P+KC+ C Q F Q LQ
Sbjct: 55 EARNCMNRSEQV---FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQ 111
Query: 121 THI 123
+H+
Sbjct: 112 SHM 114
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 41/141 (29%)
Query: 91 MRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPL 150
++ H R+HTGEKPF+C C +C+ + +L H
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEH---------------------------- 54
Query: 151 YNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCS 210
+NC + C VC R+ ++ H+ HT + PY+C CS
Sbjct: 55 ---------EARNC----MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCS 101
Query: 211 LKFSRRDNLRRHLKDQHSYDS 231
+F ++ +L+ H+ HS S
Sbjct: 102 QQFMQKKDLQSHMIKLHSGPS 122
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 76 FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ C V CD RS D+ RHIR HTG+KPF+C C + F+++ L THIR
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73 QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
Q F C +C + RS + HIR HTGEKPF C+ C + F ++ + H +I
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ C +C + +++ + H+R HT +KP+ C C KF+R D +RH K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
Y C V C ++ + RH+R HT KP++C C FSR D+L H++
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
H+R H+GEKP+ C C K A H KI
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+ RH+R H+G+KP+ C C + + H++ EK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 76 FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ C V CD RS ++ RHIR HTG+KPF+C C + F+++ L THIR
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73 QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
Q F C +C + RS + HIR HTGEKPF C+ C + F ++ + H +I
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ C +C + +++ + H+R HT +KP+ C C KF+R D +RH K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSF 232
Y C V C ++ + RH+R HT KP++C C FSR D+L H++ F
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
H+R H+GEKP+ C C K A H KI
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+ RH+R H+G+KP+ C C + + H++ EK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 76 FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ C V CD RS ++ RHIR HTG+KPF+C C + F+++ L THIR
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73 QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
Q F C +C + RS + HIR HTGEKPF C+ C + F ++ + H +I
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ C +C + +++ + H+R HT +KP+ C C KF+R D +RH K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
Y C V C +++ + RH+R HT KP++C C FSR D+L H++
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
H+R H+GEKP+ C C K A H KI
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+ RH+R H+G+KP+ C C + + H++ EK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 76 FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ C V CD RS ++ RHIR HTG+KPF+C C + F+++ L THIR
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 54
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73 QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
Q F C +C + RS + HIR HTGEKPF C+ C + F ++ + H +I
Sbjct: 31 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ C +C + +++ + H+R HT +KP+ C C KF+R D +RH K
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 82
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSF 232
Y C V C +++ + RH+R HT KP++C C FSR D+L H++ F
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
H+R H+GEKP+ C C K A H KI
Sbjct: 52 HIRTHTGEKPFACDICGRKFARSDERKRHTKI 83
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+ RH+R H+G+KP+ C C + + H++ EK
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 76 FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ C V CD RS ++ RHIR HTG+KPF+C C + F+++ L THIR
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
Y C V C +++ + RH+R HT KP++C C FSR D+L H++
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 1 MRRHLRKHSGEKPYTCYFC--NF-KSAHMSS 28
+ RH+R H+G+KP+ C C NF +S H+++
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 76 FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ C V CD RS ++ RHIR HTG+KPF+C C + F+++ L THIR
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73 QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
Q F C +C + RS + HIR HTGEKPF C+ C + F ++ + H +I
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ C +C + +++ + H+R HT +KP+ C C KF+R D +RH K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSF 232
Y C V C +++ + RH+R HT KP++C C FSR D+L H++ F
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
H+R H+GEKP+ C C K A H KI
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+ RH+R H+G+KP+ C C + + H++ EK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 34/101 (33%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
++ H+R H+G KPY C C++ +A SS+N HL+I E
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE--------------------- 62
Query: 61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGE 101
RP F C +C Y S S + H+R HTG+
Sbjct: 63 --------RP-----FKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 42/124 (33%), Gaps = 44/124 (35%)
Query: 78 CLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQE 137
C VC R ++ H+R HTG KP+KC C + SL H+RI
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI------------ 58
Query: 138 STRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRK 197
+D + C +CPY R + + HLR
Sbjct: 59 --------------------------------HSDERPFKCQICPYASRNSSQLTVHLRS 86
Query: 198 HTKD 201
HT D
Sbjct: 87 HTGD 90
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ C CDY + S + +H+R H+ E+PFKC C + L H+R
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 45/133 (33%)
Query: 103 PFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTK 162
P KC C +CF++ L+TH+R HT +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRC-HTGV-------------------------------- 34
Query: 163 NCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
Y C C Y + S+ +HLR H+ ++P++C C L H
Sbjct: 35 -----------KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Query: 223 LKDQHSYDSFRSS 235
L+ H+ DS SS
Sbjct: 84 LR-SHTGDSGPSS 95
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 170 ENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
S + C VC + + +K H+R HT KPY+C C + +L +HL+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 76 FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ C V CD + ++ HIR HTG+KPF+C C + F+Q SL HIR
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR 55
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 73 QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRL 130
Q F C +C + + + HIR HTGEKPF C+ C + F H R +HT++
Sbjct: 32 QKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFA-----TLHTRTRHTKI 84
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ C +C + Q S+ H+R HT +KP+ C C KF+ RH K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK 83
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSF 232
Y C V C Q ++ H+R HT KP++C C FS++ +L H++ F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
H+R H+GEKP+ C C K A + + H KI
Sbjct: 53 HIRTHTGEKPFACDICGRKFATLHTRTRHTKI 84
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
H+R H+G+KP+ C C + +S+N H++ EK
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK 135
F C +C + RS + HIR HTGEKPF C+ C + F ++ + H I+H +DK
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 136 QE 137
E
Sbjct: 64 VE 65
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
+ C +C + +++ + H+R HT +KP+ C C KF+R D +RH QH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI 41
H+R H+GEKP+ C C K A H I+H+ I
Sbjct: 22 HIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPI 59
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIR 124
KPF+C C + F+++ L THIR
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR 24
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
Y+ C + +++ + RH RKHT KP++CG C+ FSR D+L H+K
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 81 CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
CD+ RS ++ RH R+HTG KPF+C C + F+++ L H++
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 81 CDYHS-----PRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
CDY +S ++ H+R HTGEKP+KC + C F ++ L H R KHT
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHT 71
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1 MRRHLRKHSGEKPYTCYF--CNFKSAHMSSINNHLK 34
++ HLR H+GEKPY C + C+++ A + H +
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLK 34
+ RH RKH+G KP+ C CN + + H+K
Sbjct: 63 LTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQ 226
+Y+C C ++ +K+H+R HT +PY C +C+ F + NL +H+K +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIK 36
+++H+R H+ +PY C +CNF ++ H+K K
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIK 126
+ C C + +++HIR HT +P+ C +C F +L H++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 72 IQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
++ + C C +S ++++H R HTGEKP+KC C + F+Q+ LQ H R
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 44/122 (36%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQH 160
EKP+KC C + F+Q+ +LQ H R H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRT----------------------------------H 27
Query: 161 TKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLR 220
T Y C C Q+ +++H R HT +KPY+C C FSR D+L
Sbjct: 28 T----------GEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLS 77
Query: 221 RH 222
RH
Sbjct: 78 RH 79
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
+ C C +S D+++H R HTGEKP+KC C + F+++ L H R
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+++H R H+GEKPY C C + S + H + EK
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 1 MRRHLRKHSGEKPYTCYFCN 20
+++H R H+GEKPY C C
Sbjct: 48 LQKHQRTHTGEKPYKCPECG 67
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
+ C+ C RS + +H R HTGEKP+KC C + F+QN L H RI
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
Y C+ C ++ + +H R HT +KPY+C C FS+ L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+ +H R H+GEKPY C C + S + NH +I
Sbjct: 30 LVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 76 FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ C V CD +S + RHIR HTG+KPF+C C + F+++ L THIR
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73 QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
Q F C +C + RS + HIR HTGEKPF C+ C + F ++ + H +I
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ C +C + +++ + H+R HT +KP+ C C KF+R D +RH K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSF 232
Y C V C Q+ S+ RH+R HT KP++C C FSR D+L H++ F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
H+R H+GEKP+ C C K A H KI
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+ RH+R H+G+KP+ C C + + H++ EK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 76 FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ C V CD S ++ RHIR HTG+KPF+C C + F+++ L THIR
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 73 QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
Q F C +C + RS + HIR HTGEKPF C+ C + F ++ + H +I
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ C +C + +++ + H+R HT +KP+ C C KF+R D +RH K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
Y C V C + ++ RH+R HT KP++C C FSR D+L H++
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
H+R H+GEKP+ C C K A H KI
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+ RH+R H+G+KP+ C C + + H++ EK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 76 FTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ C V CD + ++ HIR HTG+KPF+C C + F+Q+ L HIR
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 73 QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRL 130
Q F C +C + + + +HIR HTGEKPF C+ C + F H R +HT++
Sbjct: 32 QKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFA-----TLHTRDRHTKI 84
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ C +C + Q+ + +H+R HT +KP+ C C KF+ RH K
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTK 83
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+ +H+R H+GEKP+ C C K A + + + H KI
Sbjct: 50 LNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKI 84
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSF 232
Y C V C Q ++ H+R HT KP++C C FS+ L +H++ F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
H+R H+G+KP+ C C + + +N H++ EK
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 178 CMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
C C R N + HLR HT +KPY+C FC +++ +LR HL+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKH 37
HLR H+GEKPY C FC + +A +S+ HL+ H
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH 127
H+R HTGEKP+KC FC Q SL+ H+ H
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
+ C C S D+ +H R HTGEKP+KC+ C + F Q L H R+
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 168 FRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+++ + RY C C + + +H R HT +KPY+C C F +R +L H
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+ C C + DM++H HTGEKP KC C + F+Q+ +L TH R KHT
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR-KHT 81
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 171 NDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+D+ Y C C Q MK+H HT +KP++C C FS+ NL H
Sbjct: 25 SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 28/47 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ C +C +++ ++ HL H+ +PY C +C +F ++ ++++H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
+F C +C RS + H+ H+ +P+ C +C + F Q ++ H I
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHL 223
Y C VC + + H++ HT KPYEC C+ +F RD+ RH+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
RH+ H +PY CG C KF + +L H+K
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHI 123
+ C VC + H++ HTG KP++CN C + F S H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRL 130
RH+ H G +P+ C C + F L H++I HT +
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGI 63
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 81 CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
C+ RS ++RH RRHTG KPF+C C + F+++ L+TH R
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 187 QNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+++ +KRH R+HT KP++C C KFSR D+L+ H +
Sbjct: 50 RSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR 87
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 48/136 (35%)
Query: 91 MRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRD 148
++ H R+HTGEKP++C+F C + F+++ L+ H R
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR------------------------ 59
Query: 149 PLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF 208
R + C C +++ +K H R HT +KP+ C +
Sbjct: 60 --------------------RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRW 99
Query: 209 --CSLKFSRRDNLRRH 222
C KF+R D L RH
Sbjct: 100 PSCQKKFARSDELVRH 115
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 34/124 (27%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
++ H RKH+GEKPY C F K E+ R+S + L +H
Sbjct: 24 LQMHSRKHTGEKPYQCDF-----------------KDCER---RFS------RSDQLKRH 57
Query: 61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVS 118
+R + V +P F C C RS ++ H R HTGEKPF C + C + F ++
Sbjct: 58 QRRHTGV-KP-----FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDE 111
Query: 119 LQTH 122
L H
Sbjct: 112 LVRH 115
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 191 MKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHLKDQHSYDSFRSST 236
++ H RKHT +KPY+C F C +FSR D L+RH + F+ T
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 138 STRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRK 197
S+ + C C ++ D+ L +H + Y C VC ++ + M H+R
Sbjct: 5 SSGVACEIC-GKIFRDVYHLNRHK------LSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Query: 198 H--TKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDS 231
H + KPY C C FSR D+L H+K HS S
Sbjct: 58 HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 170 ENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ S C +C R + RH H+ +KPY C C L+F R+D + H++
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGE--KPFKCNFCFQCFTQNVSLQTHIRIKHT 128
++C VC R M H+R H G KP+ C C + F++ L HI+ H+
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFK 22
+ RH HSGEKPY+C C +
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLR 44
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 91 MRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
+ RH H+GEKP+ C C F + + H+R
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 162 KNCKGAFRENDSYR----------YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF--C 209
K C FR+N + R +VC C ++ +KRH HT +KP++C F C
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 210 SLKFSRRDNLRRHLK 224
+FS NLR H++
Sbjct: 71 GKRFSLDFNLRTHVR 85
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 77 TCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRI 125
C C S ++RH HTGEKPF+C F C + F+ + +L+TH+RI
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 89 IDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHI 123
++R H+R HTG++P+ C F C + F Q+ +L++HI
Sbjct: 78 FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 190 SMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHL 223
+++ H+R HT D+PY C F C+ KF++ NL+ H+
Sbjct: 79 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 1 MRRHLRKHSGEKPYTCYF--CNFKSAHMSSINNHL 33
+R H+R H+G++PY C F CN K A +++ +H+
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
Query: 182 PYHC---------RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
PYHC +++ + RH RKHT +P++C C FSR D+L H+K
Sbjct: 36 PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 187 QNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHLKDQHSYDSFR 233
++ +K HLR HT +KPY C + C KF+R D L RH + + F+
Sbjct: 20 KSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 81 CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
C + RS ++ RH R+HTG +PF+C C + F+++ L H++
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 80 VCDYHS-----PRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
CDY +S ++ H+R HTGEKP+ C++ C F ++ L H R KHT
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHT 62
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1 MRRHLRKHSGEKPYTCYF--CNFKSAHMSSINNHLK 34
++ HLR H+GEKPY C + C +K A + H +
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 59
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
Query: 182 PYHC---------RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
PYHC +++ + RH RKHT +P++C C FSR D+L H+K
Sbjct: 35 PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 81 CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
C + RS ++ RH R+HTG +PF+C C + F+++ L H++
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 187 QNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHLKDQHSYDSFR 233
++ +K HLR HT +KPY C + C KF+R D L RH + + F+
Sbjct: 19 KSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 80 VCDYHS-----PRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
CDY +S ++ H+R HTGEKP+ C++ C F ++ L H R KHT
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHT 61
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1 MRRHLRKHSGEKPYTCYF--CNFKSAHMSSINNHLK 34
++ HLR H+GEKPY C + C +K A + H +
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 90 DMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
++ H HTGEKP++CN C F + +L+TH RI
Sbjct: 32 NLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
Y C C R ++ H HT +KPY C C +F+R NL+ H +
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+ H H+GEKPY C C + +++ H +I EK
Sbjct: 33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 45/139 (32%)
Query: 94 HIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLY 151
H+RRHTGEKP KC F C + +++ +L+TH+R HT
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHT----------------------- 93
Query: 152 NDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF--C 209
+ + +H + C AF N S R K R H+ +KPY C C
Sbjct: 94 GEKPYMCEH-EGCSKAF-SNASDR---------------AKHQNRTHSNEKPYVCKLPGC 136
Query: 210 SLKFSRRDNLRRHLKDQHS 228
+ +++ +LR+H+K H
Sbjct: 137 TKRYTDPSSLRKHVKTVHG 155
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 33/127 (25%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKR 63
H+R+H+GEKP+ C F CR S +L++ + L H
Sbjct: 58 HMRRHTGEKPHKCTF----------------------EGCRKSYSRLENLKTHLRSHTGE 95
Query: 64 CSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRR-HTGEKPFKCNF--CFQCFTQNVSLQ 120
Y+ C + D +H R H+ EKP+ C C + +T SL+
Sbjct: 96 KPYMCEHE--------GCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147
Query: 121 THIRIKH 127
H++ H
Sbjct: 148 KHVKTVH 154
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 1 MRRHLRKHSGEKPYTC 16
++ HLR H+GEKPY C
Sbjct: 85 LKTHLRSHTGEKPYMC 100
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 96 RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
R H+GEKP++C C FTQ+ +++ HI KHT
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 40
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 176 YVCMVCPYHCRQNESMKRH-LRKHTKD-KPYECGFCSLKFSRRDNLRRHLKDQHSYDSFR 233
Y C +C Q+ +MK H L+KHT++ + C C +R+ +L HL+ QHSY
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Query: 234 SS 235
S
Sbjct: 76 SG 77
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI 41
R HSGEKPY CY C+ + ++ H+ KH E +
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV 43
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
R H+ +KPYEC C +F++ ++ H+ +H+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 40
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
++C C H ++ ++ H R HT ++PY C C F R+D+LR H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTH 122
F C C H +S ++ H R HT E+P+ C+ C + F + L+ H
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTH 122
+TC +C R +R H H+ EKPFKC C + F Q+ +L H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 129 RLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQN 188
RL + K+E C FC +L+ + D Y C +C R+
Sbjct: 9 RLPSKTKKE---FICKFCGRHFTKSYNLLIHERTH-------TDERPYTCDICHKAFRRQ 58
Query: 189 ESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ ++ H H+K+KP++C C F + L H
Sbjct: 59 DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 178 CMVCPYHCRQNESMKRHLRKHTKDKP---YECGFCSLKFSRRDNLRRHLKDQH 227
C +C + CRQ S+ H RKH + + C FC +F + D++ H H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKPFKC C + F QN+ L +H+RI
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRI 34
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 94 HIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRI 125
HIR HTGEKPF C F C + F ++ +L+ H R
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRI 125
RS +++ H R HTGEKPFKC F C + F + + H+ +
Sbjct: 104 RSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 187 QNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHL 223
++E++K H R HT +KP++C F C +F+ + ++H+
Sbjct: 104 RSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP+KCN C + FTQN L H RI
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRI 34
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRIKHTRL 130
EKP+KCN C + FTQN L H RI HT +
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRI-HTGV 38
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 191 MKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRH 222
+K H R HT +KP+ C + C +F+R D L RH
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRI 125
+S ++ H R HTGEKPF C++ C + F ++ L H R
Sbjct: 31 KSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 36/158 (22%)
Query: 87 RSIDMRRHIRRHTGEKPFKC--NFCFQCFTQNVSLQTHIRIKHT--RLFGQDKQESTRIY 142
++ ++ H+ +HTGEKPF C C + FT L H + HT + F D +
Sbjct: 26 KNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRF 84
Query: 143 CT-------FCRDPLYNDLKILLQ--HTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKR 193
T F R ++++KI + H +NC AF++++ +K
Sbjct: 85 TTKANMKKHFNR---FHNIKICVYVCHFENCGKAFKKHN-----------------QLKV 124
Query: 194 HLRKHTKDKPYECG--FCSLKFSRRDNLRRHLKDQHSY 229
H HT+ PYEC C +FS L+RH K Y
Sbjct: 125 HQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 175 RYVCMV--CPYHCRQNESMKRHLRKHTKDKPYECG--FCSLKFSRRDNLRRH 222
RY+C C +N ++ HL KHT +KP+ C C F+ +L RH
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP+KCN C + FTQN L H R+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRV 34
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 96 RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLK 155
R HTGEKP+ C+ C + F Q L H + H F C+ C +
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF-----VPAAFVCSKCGK-TFTRRN 61
Query: 156 ILLQHTKNCKG 166
+ +H NC G
Sbjct: 62 TMARHADNCAG 72
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 190 SMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS 235
+++ H R H D+P++C +CS + NL +H+K H S SS
Sbjct: 24 ALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 91 MRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFG 132
+R H R H ++PFKCN+C Q +L H++ H + G
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE 39
+R H R H ++P+ C +C+F + S+++ H+K H +
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKPFKC C + FTQN L +H R+
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRV 34
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP++C+ C + F+Q SL HIR+
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRV 33
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 84 HSPRSIDMRRHIRRHTGEKP---FKCNFCFQCFTQNVSLQTHIR-IKHTRLFGQDKQEST 139
H+P+ +D ++ R K F C C F+ +VSL+ HIR +HT++ K+E T
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFT 111
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 99 TGEKPFKCNFCFQCFTQNVSLQTHIRI 125
+GEKP++C C + F+Q SL H R+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERL 32
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP+KCN C + F+Q L H RI
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRI 34
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP+KCN C + FTQN L H I
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGI 34
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP+KCN C + FTQN L H I
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGI 34
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKPF+C C + FTQN L +H R+
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRV 34
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
E+PFKCN C + F + L H+R+ H+R
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRL-HSR 37
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 175 RYVCMV--CPYHCRQNESMKRHLRKHTKDKPYECG--FCSLKFSRRDNLRRH 222
RY+C C +N ++ HL KHT +KP+ C C F+ +L RH
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH 54
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 81 CDYHSPRSIDMRRHIRRHTGEKPFKC 106
C ++ ++ H+ +HTGEKPF C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPC 36
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 12 KPYTCYFCNFKSAHMSSINNHLKIKH 37
K Y C +C F+SA S++ H+K KH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLKDQHS 228
K Y+C +C + + NL+ H+K +HS
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHS 27
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 99 TGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
T EKPF+C+ C + F Q +L +H R+ HT
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH-RMIHT 36
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 199 TKDKPYECGFCSLKFSRRDNLRRHLK 224
+ +KPY C C L+F R+D + H++
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVR 31
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 99 TGEKPFKCNFCFQCFTQNVSLQTHIRI 125
+GEKP+ C C + FTQ+ L H R+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRV 32
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 168 FRENDSYRYVCMVCPYHCRQNESMKRH-LRKHTKD-KPYECGFCSLKFSRRDNLRRHLKD 225
F + + Y C VC + RH + H ++ K Y C FC +F+R+DN+ H+K
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 226 QH 227
H
Sbjct: 63 IH 64
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 201 DKPYECGFCSLKFSRRDNLRRHLKDQHSYD 230
KPY C C FSR D+L H+K H+ +
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSE 39
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 204 YECGFCSLKFSRRDNLRRHLKDQHS 228
Y CG C+ F+RRD L RH + HS
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHS 27
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLKDQHS 228
K Y+C +C +F+ NL+ H+K +HS
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHS 27
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
K ++C +C + F + +L+THI+ KH++
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSK 28
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
+KP+KCN C + FTQN L H I
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGI 34
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLKDQHS 228
K Y+C +C L+ + NL+ H+K +HS
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHS 27
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 12 KPYTCYFCNFKSAHMSSINNHLKIKH 37
K Y C +C +SA S++ H+K KH
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKH 26
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLKDQ 226
+PY C +C+ F + NL +H+K +
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMKSK 25
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP++C C + F Q +L H RI
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRI 34
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 201 DKPYECGFCSLKFSRRDNLRRH 222
+KPY CG C F+++ NL +H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQH 31
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
F C C + + RH R H G +P C C +CF + H+++
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV 54
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+KP++C C + F QN SL H R HT
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHT 37
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKPFKC C + + Q V L H R+
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRV 34
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP+KCN C + F N L H RI
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRI 34
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 12 KPYTCYFCNFKSAHMSSINNHLKIKH 37
K Y C +C ++SA S++ H+K KH
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKH 26
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP++C+ C + F+ SL H RI
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRI 34
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 201 DKPYECGFCSLKFSRRDNLRRH 222
+KPYEC C FS R +L H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVH 31
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP+KC+ C + F SL H RI
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRI 34
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
+K FKCN C + FTQ+ SL H RI
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRI 34
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP++C+ C + F+ + SL H R+
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRV 34
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 28.5 bits (62), Expect = 4.4, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
++C VC + +RHLR + + C +C F L RH+ H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 11 EKPYTCYFCNFKSAHMSSINNHLKI 35
EKPY C C + H+ ++ +HL+I
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRI 33
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDK 202
+VC VC + E++KRH R HT +K
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK 135
+ C C+ P + +H HTGE+ ++C C + F + +HI+ H+ QD
Sbjct: 51 YPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHS----QDP 106
Query: 136 QESTRIY 142
+++Y
Sbjct: 107 SGDSKLY 113
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKF 213
Y+C+VC S++RH H+ +K Y C +C F
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCF 113
+ C+VC +RRH H+ EK + C +C + F
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EKP++CN C + F+ SL TH I
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAI 34
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 201 DKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS 235
+ PYEC C FSR+D L H K HS S SS
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKT-HSGQSGPSS 43
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLK 224
KP++C C KFSR D+L+ H +
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTR 23
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 99 TGEKPFKCNFCFQCFTQNVSLQTHIRI 125
+GEKP+ CN C + F+ L H RI
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRI 32
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 7.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
EKP+ CN C + F + L H+R+ HT+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRV-HTQ 37
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRI 125
EK +KC+ C + F+Q+ LQTH R+
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRV 34
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 199 TKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS 235
+ + PYEC C F+R+D L H + H+ +S SS
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQR-THAGESGPSS 41
>pdb|4DDJ|A Chain A, Crystal Structure Of Saposin A In Complex With
Lauryldimethylamine-N- Oxide (Ldao)
Length = 83
Score = 27.7 bits (60), Expect = 8.7, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 52 SHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFC 109
+ EE LV K C ++P+PN+ + +V D + P +D+ + GE N C
Sbjct: 25 TEEEILVYLEKTCDWLPKPNMSASCKEIV-DSYLPVILDIIKGEMSRPGEVCSALNLC 81
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRI 125
KP++CN C + F+Q L H R+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRV 34
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
EKP+KCN C + F + +L TH ++ HT
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTH-QVIHT 36
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 8.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 99 TGEKPFKCNFCFQCFTQNVSLQTH 122
+GEKP+ CN C + FT L H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH 29
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 99 TGEKPFKCNFCFQCFTQNVSLQTHIRI 125
+G+KP CN C + F Q+ L H RI
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRI 32
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 199 TKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSS 235
T++KPYEC C F R L H + HS +S SS
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRT-HSGESGPSS 43
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 12 KPYTCYFCNFKSAHMSSINNHLKIKH 37
K Y C +C +SA S++ H+K KH
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKH 26
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,341,709
Number of Sequences: 62578
Number of extensions: 369588
Number of successful extensions: 1941
Number of sequences better than 100.0: 151
Number of HSP's better than 100.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1189
Number of HSP's gapped (non-prelim): 705
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)