RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4409
(305 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 69.4 bits (171), Expect = 2e-14
Identities = 59/228 (25%), Positives = 82/228 (35%), Gaps = 64/228 (28%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKS-AHMSSINNHLKIKHLEK----IQCRYSILKLQSHEES 56
GEKPY C C KS + + H + EK +C K S ++
Sbjct: 10 VAQAALEPGEKPYACPECG-KSFSRSDHLAEHQRTHTGEKPYKCPECG----KSFSDKKD 64
Query: 57 LVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN 116
L +H +R +P + C C + ++R H R HTGEKP+ C C + F+Q
Sbjct: 65 LTRH-QRTHTGEKP-----YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL 118
Query: 117 VSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHT--KNCKGAFRENDSY 174
L+ H R HT K
Sbjct: 119 AHLRAHQRT----------------------------------HTGEK------------ 132
Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
Y C C + +++ H R HT +KPY+C C FSRRD L H
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 63.6 bits (156), Expect = 2e-12
Identities = 33/154 (21%), Positives = 46/154 (29%), Gaps = 52/154 (33%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFC 146
S GEKP+ C C + F+++ L H R
Sbjct: 5 GSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT--------------------- 43
Query: 147 RDPLYNDLKILLQHT-------KNCKGAFRENDSYR-----------YVCMVCPYHCRQN 188
HT C +F + Y C C Q
Sbjct: 44 -------------HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQR 90
Query: 189 ESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+++ H R HT +KPY C C FS+ +LR H
Sbjct: 91 ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 60.1 bits (147), Expect = 4e-11
Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKS-AHMSSINNHLKIKHLEK----IQCRYSILKLQSHEES 56
RH R H+GEKPY C C KS + +++ H + EK +C K S
Sbjct: 66 TRHQRTHTGEKPYKCPECG-KSFSQRANLRAHQRTHTGEKPYACPECG----KSFSQLAH 120
Query: 57 LVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQN 116
L H +R +P + C C R ++ H R HTGEKP+KC C + F++
Sbjct: 121 LRAH-QRTHTGEKP-----YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174
Query: 117 VSLQTHIRIKHT 128
+L H R HT
Sbjct: 175 DALNVHQRT-HT 185
Score = 50.1 bits (121), Expect = 1e-07
Identities = 50/208 (24%), Positives = 70/208 (33%), Gaps = 62/208 (29%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK----IQCRYSILKLQSHEESL 57
H R H+GEKPY C C + + H + EK +C K S +L
Sbjct: 38 AEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECG----KSFSQRANL 93
Query: 58 VQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNV 117
H +R +P + C C + +R H R HTGEKP+KC C + F++
Sbjct: 94 RAH-QRTHTGEKP-----YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRED 147
Query: 118 SLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHT--KNCKGAFRENDSYR 175
+L TH R HT K
Sbjct: 148 NLHTHQRT----------------------------------HTGEK------------P 161
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKP 203
Y C C + +++ H R HT K
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 39.0 bits (92), Expect = 6e-04
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 186 RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ S +KPY C C FSR D+L H
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 64.6 bits (158), Expect = 4e-13
Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 28/128 (21%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAK 62
+ C+ + M + H+ ++H+ + + V + +
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG-----------PEQNNHVCYWE 63
Query: 63 RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQ 120
C + F + HIR HTGEKPF C F C + F ++ +L+
Sbjct: 64 ECPREGKS---FK-----------AKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLK 109
Query: 121 THIRIKHT 128
H R HT
Sbjct: 110 IHKRT-HT 116
Score = 55.4 bits (134), Expect = 9e-10
Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 33/145 (22%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYN 152
+ C + F+ L TH+ ++H Q+ C +
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKS-FK 73
Query: 153 DLKILLQH-------------TKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHT 199
L+ H C F ++E++K H R HT
Sbjct: 74 AKYKLVNHIRVHTGEKPFPCPFPGCGKIF-----------------ARSENLKIHKRTHT 116
Query: 200 KDKPYECGF--CSLKFSRRDNLRRH 222
+KP++C F C +F+ + ++H
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 40.7 bits (96), Expect = 1e-04
Identities = 30/130 (23%), Positives = 42/130 (32%), Gaps = 63/130 (48%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
+ H+R H+GEKP+ C F C K+ + E+L H
Sbjct: 78 LVNHIRVHTGEKPFPCPFP----------------------GCG----KIFARSENLKIH 111
Query: 61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVS 118
R HTGEKPFKC F C + F +
Sbjct: 112 ----------------------------------KRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 119 LQTHIRIKHT 128
+ H+ + HT
Sbjct: 138 RKKHMHV-HT 146
Score = 37.3 bits (87), Expect = 0.002
Identities = 6/35 (17%), Positives = 8/35 (22%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
C FS L H+ +H
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 28.8 bits (65), Expect = 1.4
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 2 RRHLRKHSGEKPYTC 16
++H+ H+ +K
Sbjct: 139 KKHMHVHTSDKSGPS 153
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 63.7 bits (156), Expect = 5e-13
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 52/142 (36%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCT 144
+ ++ H R+HTGEKP++C+F C + F+++ L+ H R
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR------------------- 60
Query: 145 FCRDPLYNDLKILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDK 202
HT K + C C +++ +K H R HT +K
Sbjct: 61 ---------------HTGVK------------PFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 203 PYECGF--CSLKFSRRDNLRRH 222
P+ C + C KF+R D L RH
Sbjct: 94 PFSCRWPSCQKKFARSDELVRH 115
Score = 56.0 bits (136), Expect = 3e-10
Identities = 34/128 (26%), Positives = 47/128 (36%), Gaps = 38/128 (29%)
Query: 2 RRHLRKHSGEKPYTCYF--CNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQ 59
+ H RKH+GEKPY C F C + + + H + K
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK------------------- 65
Query: 60 HAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNV 117
P F C C RS ++ H R HTGEKPF C + C + F ++
Sbjct: 66 ----------P-----FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110
Query: 118 SLQTHIRI 125
L H +
Sbjct: 111 ELVRHHNM 118
Score = 42.1 bits (100), Expect = 2e-05
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 182 PYHC---------RQNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRH 222
P+ C + ++ H RKHT +KPY+C F C +FSR D L+RH
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
Score = 27.1 bits (61), Expect = 3.3
Identities = 5/26 (19%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 199 TKDKPYEC--GFCSLKFSRRDNLRRH 222
++ +P+ C C+ ++ + +L+ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMH 27
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 62.5 bits (153), Expect = 1e-12
Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 45/149 (30%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK 135
C C ++ H R+HTGEKPF+C C +C+ + +L H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM------- 60
Query: 136 QESTRIYCTFCRDPLYNDLKILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKR 193
+ + + C VC R+ ++
Sbjct: 61 ------------------------NRSEQV------------FTCSVCQETFRRRMELRL 84
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
H+ HT + PY+C CS +F ++ +L+ H
Sbjct: 85 HMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 50.2 bits (121), Expect = 3e-08
Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 40/125 (32%)
Query: 8 HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK----IQCRYSILKLQSHEESLVQHAKR 63
SG C C+ K + H + EK +C K +E+L++H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCG----KCYFRKENLLEH--- 54
Query: 64 CSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHI 123
+ E+ F C+ C + F + + L+ H+
Sbjct: 55 ----------------------------EARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86
Query: 124 RIKHT 128
HT
Sbjct: 87 VS-HT 90
Score = 41.7 bits (99), Expect = 3e-05
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
C +K H RKHT +KP+EC C + R++NL H
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 31.7 bits (73), Expect = 0.10
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 198 HTKDKPYECGFCSLKFSRRDNLRRH 222
+ EC C KF + L+ H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH 26
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 60.2 bits (147), Expect = 3e-12
Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 43/114 (37%)
Query: 92 RRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLY 151
R H+GEKP++C C FTQ+ +++ HI KHT E+
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT--------ENVA----------- 44
Query: 152 NDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRK-HTKDKPY 204
++ C C + + HLRK H+ P
Sbjct: 45 -----------------------KFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 55.6 bits (135), Expect = 2e-10
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGE--KPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+ C +C +S M+ HI + E F C C + L H+R +H+
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Score = 51.8 bits (125), Expect = 3e-09
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHT--KDKPYECGFCSLKFSRRDNLRRHLKDQHSYD 230
Y C +C Q+ +MK H+ + + C C +R+ +L HL+ QHSY
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Score = 50.2 bits (121), Expect = 1e-08
Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 33/104 (31%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
R HSGEKPY CY C+ + ++ H+ KH E
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN--------------------- 42
Query: 62 KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRR-HTGEKPF 104
F C CD R D+ H+R+ H+ P
Sbjct: 43 ------VAK-----FHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 43.7 bits (104), Expect = 3e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 190 SMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
S R H+ +KPYEC C +F++ ++ H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMH 34
Score = 32.5 bits (75), Expect = 0.020
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1 MRRHLRKHSGE--KPYTCYFCNFKSAHMSSINNHLKIKH 37
M+ H+ + E + C C+ A S + HL+ +H
Sbjct: 31 MKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 25.9 bits (58), Expect = 4.1
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 1 MRRHLRK-HSGEKPYT 15
+ HLRK HS P +
Sbjct: 61 LGVHLRKQHSYSGPSS 76
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 59.0 bits (144), Expect = 1e-11
Identities = 27/127 (21%), Positives = 40/127 (31%), Gaps = 48/127 (37%)
Query: 98 HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKIL 157
P KC C +CF++ L+TH+R
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC-------------------------------- 30
Query: 158 LQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSR 215
HT K Y C C Y + S+ +HLR H+ ++P++C C
Sbjct: 31 --HTGVK------------PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN 76
Query: 216 RDNLRRH 222
L H
Sbjct: 77 SSQLTVH 83
Score = 57.4 bits (140), Expect = 4e-11
Identities = 32/134 (23%), Positives = 44/134 (32%), Gaps = 48/134 (35%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK 135
C VC R ++ H+R HTG KP+KC C + SL H+RI
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI---------- 58
Query: 136 QESTRIYCTFCRDPLYNDLKILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKR 193
H+ + + C +CPY R + +
Sbjct: 59 ------------------------HSDERP------------FKCQICPYASRNSSQLTV 82
Query: 194 HLRKHTKDKPYECG 207
HLR HT D G
Sbjct: 83 HLRSHTGDSGPSSG 96
Score = 53.6 bits (130), Expect = 1e-09
Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 35/121 (28%)
Query: 8 HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYV 67
P+ C C + + H++ K
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK--------------------------- 35
Query: 68 PRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH 127
P + C CDY + S + +H+R H+ E+PFKC C + L H+R H
Sbjct: 36 --P-----YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS-H 87
Query: 128 T 128
T
Sbjct: 88 T 88
Score = 43.6 bits (104), Expect = 4e-06
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 34/105 (32%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
+ H+R H+G KPY C C++ +A SS+N HL+I E+
Sbjct: 25 KTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER--------------------- 63
Query: 62 KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKC 106
P F C +C Y S S + H+R HTG+
Sbjct: 64 --------P-----FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 58.6 bits (143), Expect = 3e-11
Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 48/132 (36%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYN 152
+K F C FC + FT++ +L H R
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT--------------------------- 39
Query: 153 DLKILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCS 210
HT + Y C +C R+ + ++ H H+K+KP++C C
Sbjct: 40 -------HTDER------------PYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECG 80
Query: 211 LKFSRRDNLRRH 222
F + L H
Sbjct: 81 KGFCQSRTLAVH 92
Score = 52.4 bits (127), Expect = 4e-09
Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 35/126 (27%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAK 62
+K + C FC ++ H + E+
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDER---------------------- 44
Query: 63 RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTH 122
P +TC +C R +R H H+ EKPFKC C + F Q+ +L H
Sbjct: 45 -------P-----YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Query: 123 IRIKHT 128
+ H
Sbjct: 93 KTL-HM 97
Score = 34.7 bits (81), Expect = 0.006
Identities = 20/106 (18%), Positives = 27/106 (25%), Gaps = 34/106 (32%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
H R H+ E+PYTC C+ + +H I EK
Sbjct: 34 LIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK--------------------- 72
Query: 62 KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
P F C C +S + H H
Sbjct: 73 ------P-------FKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 57.9 bits (141), Expect = 3e-11
Identities = 20/118 (16%), Positives = 28/118 (23%), Gaps = 40/118 (33%)
Query: 92 RRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLY 151
R HTGEKP+ C+ C + F Q L H + +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR-YHDPNFVPA-------------A-- 47
Query: 152 NDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC 209
+VC C + +M RH E
Sbjct: 48 ------------------------FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 46.0 bits (110), Expect = 4e-07
Identities = 22/112 (19%), Positives = 28/112 (25%), Gaps = 30/112 (26%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
R H+GEKPY C C+ ++ H K H
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN--------------------- 42
Query: 62 KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCF 113
+VP F C C R M RH G +
Sbjct: 43 ----FVPAA-----FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 44.1 bits (105), Expect = 2e-06
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGE----KPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+ C CD + + H +R+ F C+ C + FT+ ++ H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-CA 71
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHT----KDKPYECGFCSLKFSRRDNLRRH 222
PY C RQ + + H +++ + C C F+RR+ + RH
Sbjct: 15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 190 SMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
S R HT +KPY C C F ++ L H K
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK 36
Score = 31.0 bits (71), Expect = 0.092
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 1 MRRHLRKHSGEKPYTCYFC 19
M RH +G
Sbjct: 63 MARHADNCAGPDGVEGENS 81
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 57.1 bits (139), Expect = 3e-11
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
C C Y +R H R H ++PFKCN+C Q +L H++
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FH 61
Score = 50.2 bits (121), Expect = 1e-08
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
C C Y C +++ H R H D+P++C +CS + NL +H+K
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 48/113 (42%)
Query: 96 RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLK 155
+ P KC+ C + +L+ H RI
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI------------------------------ 31
Query: 156 ILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
H + + C C + +Q ++ +H++K D
Sbjct: 32 ----HCTDRP------------FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 42.1 bits (100), Expect = 7e-06
Identities = 12/101 (11%), Positives = 31/101 (30%), Gaps = 34/101 (33%)
Query: 6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCS 65
S P C C++ + +++ H +I ++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDR------------------------- 36
Query: 66 YVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKC 106
P F C C + + + ++ +H+++ G+
Sbjct: 37 ----P-----FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
R H R H ++P+ C +C+F + S+++ H+K H +
Sbjct: 26 RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
Score = 37.9 bits (89), Expect = 2e-04
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ P +C CS S + LR H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH 28
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 56.7 bits (138), Expect = 8e-11
Identities = 30/135 (22%), Positives = 39/135 (28%), Gaps = 50/135 (37%)
Query: 98 HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKIL 157
+G C C + F L H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS-------------------------------- 29
Query: 158 LQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHT--KDKPYECGFCSLKF 213
H+ K Y C VC ++ + M H+R H KPY C C F
Sbjct: 30 --HSGEK------------PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF 75
Query: 214 SRRDNLRRHLKDQHS 228
SR D+L H+K HS
Sbjct: 76 SRPDHLNGHIKQVHS 90
Score = 50.2 bits (121), Expect = 2e-08
Identities = 27/123 (21%), Positives = 38/123 (30%), Gaps = 36/123 (29%)
Query: 8 HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYV 67
SG C C + +N H EK
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEK--------------------------- 34
Query: 68 PRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGE--KPFKCNFCFQCFTQNVSLQTHIRI 125
P ++C VC R M H+R H G KP+ C C + F++ L HI+
Sbjct: 35 --P-----YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Query: 126 KHT 128
H+
Sbjct: 88 VHS 90
Score = 33.2 bits (77), Expect = 0.015
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
RH HSGEKPY+C C + ++ H++
Sbjct: 25 RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Score = 28.2 bits (64), Expect = 1.1
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1 MRRHLRKHSGE--KPYTCYFCNFKSAHMSSINNHLKIKH 37
M H+R H G KPY C C + +N H+K H
Sbjct: 51 MSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 58.4 bits (142), Expect = 1e-10
Identities = 42/232 (18%), Positives = 58/232 (25%), Gaps = 92/232 (39%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAK- 62
K Y C C + L H
Sbjct: 3 EKALPVVYKRYIC----------------------SFADCG----AAYNKNWKLQAHLCK 36
Query: 63 -------RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN--FCFQCF 113
C C+ + RH HTGEK F C+ C F
Sbjct: 37 HTGEKPFPCKEEG------------CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRF 84
Query: 114 TQNVSLQTHIRIKHTRLFGQDKQESTRIY-CTFCRDPLYNDLKILLQHTKNCKGAFREND 172
T +++ H +Y C H +NC AF
Sbjct: 85 TTKANMKKHFNR-FHN-------IKICVYVC----------------HFENCGKAF---- 116
Query: 173 SYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC--GFCSLKFSRRDNLRRH 222
+++ +K H HT+ PYEC C +FS L+RH
Sbjct: 117 -------------KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 52.6 bits (127), Expect = 2e-08
Identities = 28/144 (19%), Positives = 41/144 (28%), Gaps = 34/144 (23%)
Query: 3 RHLRKHSGEKPYTC--YFCNFKSAHMSSINNHLKIKHLEKI--------QCRYSILKLQS 52
RH H+GEK +TC C+ + +++ H H KI C K
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCG----KAFK 117
Query: 53 HEESLVQHAK--------RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPF 104
L H C + CD ++RH + H G
Sbjct: 118 KHNQLKVHQFSHTQQLPYECPHEG------------CDKRFSLPSRLKRHEKVHAGYPCK 165
Query: 105 KCNFCFQCFTQNVSLQTHIRIKHT 128
K + C H+ H
Sbjct: 166 KDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 44.9 bits (107), Expect = 7e-06
Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 43/135 (31%)
Query: 2 RRHLRKHSGEKPYTC--YFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQ 59
+ HL KH+GEKP+ C C + + H EK
Sbjct: 31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK------------------- 71
Query: 60 HAKRCSYVPRPNIQFNFTC--LVCDYHSPRSIDMRRHIRRHTGEK--PFKCNF--CFQCF 113
NFTC CD +M++H R K + C+F C + F
Sbjct: 72 ---------------NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF 116
Query: 114 TQNVSLQTHIRIKHT 128
++ L+ H HT
Sbjct: 117 KKHNQLKVHQFS-HT 130
Score = 33.3 bits (77), Expect = 0.044
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 194 HLRKHTKDKPYECGF--CSLKFSRRDNLRRHLK 224
K Y C F C +++ L+ HL
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLC 35
Score = 31.8 bits (73), Expect = 0.16
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLE 39
+RH + H+G C+F + H+ H +
Sbjct: 153 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 27.2 bits (61), Expect = 4.9
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 2 RRHLRKHSGEKPYTC 16
+ H H+ + PY C
Sbjct: 123 KVHQFSHTQQLPYEC 137
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 54.3 bits (131), Expect = 5e-10
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTK---DKPYECGFCSLKFSRRDNLRRHLKDQHS 228
C +C + CRQ S+ H RKH + + C FC +F + D++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Score = 53.2 bits (128), Expect = 1e-09
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHT---GEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFG 132
C +C + + + H R+H F C FC + F + S+ H H L
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 133 QDKQES 138
++ S
Sbjct: 68 APQESS 73
Score = 50.1 bits (120), Expect = 2e-08
Identities = 15/109 (13%), Positives = 21/109 (19%), Gaps = 41/109 (37%)
Query: 98 HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKIL 157
+G +C C Q SL H R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK-HAETVAA------------------------ 36
Query: 158 LQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
R+ C C + +S+ H K
Sbjct: 37 ----------------LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Score = 38.5 bits (90), Expect = 2e-04
Identities = 14/100 (14%), Positives = 23/100 (23%), Gaps = 31/100 (31%)
Query: 8 HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYV 67
SG C C F +S+N H + HA+ + +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK------------------------HAETVAAL 37
Query: 68 PRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
F C C + + H +
Sbjct: 38 R-------FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
Score = 35.5 bits (82), Expect = 0.002
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 1 MRRHLRKHS---GEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQC 43
+ H RKH+ + C FC + S+ H H +
Sbjct: 23 LNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA 68
Score = 32.0 bits (73), Expect = 0.031
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 198 HTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ +C C ++ +L H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR 28
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 54.4 bits (132), Expect = 5e-10
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
F C +C + RS + HIR HTGEKPF C+ C + F ++ + H I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-QH 55
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ C +C + +++ + H+R HT +KP+ C C KF+R D +RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 43.6 bits (104), Expect = 3e-06
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
F C +C RS + +RH P + + ++N L+ +
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKK 83
Score = 43.6 bits (104), Expect = 3e-06
Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 49/127 (38%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQHT 161
KPF+C C + F+++ L THIR HT
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT----------------------------------HT 27
Query: 162 --KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNL 219
K + C +C +++ KRH P S+ +L
Sbjct: 28 GEK------------PFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHL 74
Query: 220 RRHLKDQ 226
+
Sbjct: 75 ENEVARL 81
Score = 35.2 bits (82), Expect = 0.003
Identities = 15/104 (14%), Positives = 26/104 (25%), Gaps = 38/104 (36%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
H+R H+GEKP+ C C K A H I
Sbjct: 20 TTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-QHIL--------------------- 57
Query: 62 KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHI---RRHTGEK 102
+ ++ + + ++ GE+
Sbjct: 58 -------------PILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 52.6 bits (127), Expect = 2e-09
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 76 FTCLVCDYHSPRSIDMRRHIR--RHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH 127
+ C VC + RH K + C FCF+ FT+ ++ H++I H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 51.0 bits (123), Expect = 5e-09
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 176 YVCMVCPYHCRQNESMKRHLR--KHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
Y C VC + RH K Y C FC +F+R+DN+ H+K H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 44.1 bits (105), Expect = 1e-06
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 96 RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
GE ++C C + +T + H H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK 35
Score = 36.0 bits (84), Expect = 0.001
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ Y C CS ++ N RH
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRH 29
Score = 32.9 bits (76), Expect = 0.014
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 1 MRRHLR--KHSGEKPYTCYFCNFKSAHMSSINNHLKIKH 37
RH K Y C FC + ++ H+KI H
Sbjct: 26 FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 28.3 bits (64), Expect = 0.55
Identities = 14/95 (14%), Positives = 22/95 (23%), Gaps = 32/95 (33%)
Query: 6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCS 65
GE Y C C+ H+S+ H H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH---------------KRN---------- 37
Query: 66 YVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTG 100
+ + C C R +M H++
Sbjct: 38 --VKV-----YPCPFCFKEFTRKDNMTAHVKIIHK 65
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 52.1 bits (126), Expect = 2e-09
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
+VC VC + E +KRH R HT +KPY CG C+ F+RRD L RH + HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 51.3 bits (124), Expect = 3e-09
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
F C VC R ++RH R HT EKP+ C C + FT+ L H + H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 32.5 bits (75), Expect = 0.017
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+ F C C + F + L+ H R HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HT 26
Score = 31.7 bits (73), Expect = 0.031
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKH 37
+RH R H+ EKPY C CN + H + H
Sbjct: 19 KRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 28.6 bits (65), Expect = 0.39
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 202 KPYECGFCSLKFSRRDNLRRH 222
+ + C C+ F+R+++L+RH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 52.9 bits (128), Expect = 2e-09
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
F C +C + RS + HIR HTGEKPF C+ C + F ++ + H +I H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HL 86
Score = 52.1 bits (126), Expect = 4e-09
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+S + RHIR HTG+KPF+C C + F+++ L THIR HT
Sbjct: 18 QSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT 58
Score = 47.8 bits (115), Expect = 1e-07
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 50/128 (39%)
Query: 101 EKPFKCNF--CFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILL 158
E+P+ C C + F+Q+ SL HIRI
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI--------------------------------- 28
Query: 159 QHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRR 216
HT K + C +C + +++ + H+R HT +KP+ C C KF+R
Sbjct: 29 -HTGQKP------------FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75
Query: 217 DNLRRHLK 224
D +RH K
Sbjct: 76 DERKRHTK 83
Score = 35.9 bits (84), Expect = 0.002
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 34/101 (33%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
RH+R H+G+KP+ C C + + H++ EK
Sbjct: 23 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK--------------------- 61
Query: 62 KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEK 102
P F C +C RS + +RH + H +K
Sbjct: 62 --------P-----FACDICGRKFARSDERKRHTKIHLRQK 89
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 51.8 bits (125), Expect = 4e-09
Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 46/130 (35%)
Query: 97 RHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT--RLFGQDKQESTRIYCTFCRDPLYNDL 154
+ T C + +T++ L+ H+R HT + + C +
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYH----------CDW--------- 40
Query: 155 KILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFS 214
C F +D + RH RKHT +P++C C FS
Sbjct: 41 -------DGCGWKFARSD-----------------ELTRHYRKHTGHRPFQCQKCDRAFS 76
Query: 215 RRDNLRRHLK 224
R D+L H+K
Sbjct: 77 RSDHLALHMK 86
Score = 47.9 bits (115), Expect = 1e-07
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
RS ++ RH R+HTG +PF+C C + F+++ L H++
Sbjct: 49 RSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 44.1 bits (105), Expect = 3e-06
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 73 QFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN--FCFQCFTQNVSLQTHIRIKHT 128
C +S ++ H+R HTGEKP+ C+ C F ++ L H R HT
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HT 61
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHL 38
RH RKH+G +P+ C C+ + + H+K H
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR-HF 89
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 2 RRHLRKHSGEKPYTC 16
+ HLR H+GEKPY C
Sbjct: 24 KAHLRTHTGEKPYHC 38
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKPFKC C + FTQN L +H R+ HT
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HT 36
Score = 35.6 bits (83), Expect = 8e-04
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KP++C C +F++ L H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 31.0 bits (71), Expect = 0.038
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
F C C ++ + H R HTGEKP +
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.12
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
SGEKP+ C C + S +++H ++
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV 34
Score = 29.4 bits (67), Expect = 0.14
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
+ C C QN + H R HT +KP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.95
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 2 RRHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 29 HSHQRVHTGEKPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 49.4 bits (119), Expect = 9e-09
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
GEKP+KC C F Q L+ H+ I HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HT 35
Score = 36.0 bits (84), Expect = 7e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+KPY+C C +F + +LR H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 29.4 bits (67), Expect = 0.12
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
GEKPY C C + ++ + H+ I
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 27.9 bits (63), Expect = 0.44
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPY 204
Y C C Q ++ H+ HT P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 27.9 bits (63), Expect = 0.47
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPF 104
+ C C + +R H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 27.5 bits (62), Expect = 0.64
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 1 MRRHLRKHSGEKPYT 15
+R H+ H+G P +
Sbjct: 27 LRAHVLIHTGSGPSS 41
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 52.2 bits (126), Expect = 1e-08
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 45/128 (35%)
Query: 11 EKPYTCYFCNFKSAHMSSINNHLKIKHL---EKIQCRYSILKLQSHEESLVQHAKRCSYV 67
E C+ + + +H+ +H+ K
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERK--------------------------- 33
Query: 68 PRPNIQFNFTCLVCDYHSP-----RSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQ 120
F C + H+RRHTGEKP KC F C + +++ +L+
Sbjct: 34 -------EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 121 THIRIKHT 128
TH+R HT
Sbjct: 87 THLRS-HT 93
Score = 48.7 bits (117), Expect = 2e-07
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 42/135 (31%)
Query: 1 MRRHLRKHSGEKPYTCYF--CNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLV 58
+ H+R+H+GEKP+ C F C + + ++ HL+ EK
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK------------------ 96
Query: 59 QHAKRCSYVPRPNIQFNFTC--LVCDYHSPRSIDMRRHIRR-HTGEKPFKCNF--CFQCF 113
P + C C + D +H R H+ EKP+ C C + +
Sbjct: 97 ---------P-------YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRY 140
Query: 114 TQNVSLQTHIRIKHT 128
T SL+ H++
Sbjct: 141 TDPSSLRKHVKT-VH 154
Score = 46.4 bits (111), Expect = 1e-06
Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 48/129 (37%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKILLQH 160
E + + C Q F L HI +H H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHI-------------------------------H 29
Query: 161 TKNCKGAFRENDSYRYVCMVCPYHCR-----QNESMKRHLRKHTKDKPYECGF--CSLKF 213
+ +VC + H+R+HT +KP++C F C +
Sbjct: 30 G-------ERKE---FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSY 79
Query: 214 SRRDNLRRH 222
SR +NL+ H
Sbjct: 80 SRLENLKTH 88
Score = 35.3 bits (82), Expect = 0.008
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 182 PYHCRQNE---------SMKRH-LRKHTKDKPYECGF--CSLKFSRRDNLRRHLK 224
PY C +H R H+ +KPY C C+ +++ +LR+H+K
Sbjct: 97 PYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 31.8 bits (73), Expect = 0.12
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLKDQH 227
CS +F ++ L H+ +H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH 27
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 1e-08
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKP+KCN C + FTQN L H RI HT
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HT 36
Score = 35.9 bits (84), Expect = 7e-04
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KPY+C C F++ +L H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 30.5 bits (70), Expect = 0.048
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
H R HTGEKP +
Sbjct: 30 NHWRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.13
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
SGEKPY C C S + NH +I
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI 34
Score = 29.4 bits (67), Expect = 0.15
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C QN + H R HT +KP
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.86
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 30 NHWRIHTGEKPSGP 43
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 50.9 bits (123), Expect = 1e-08
Identities = 21/141 (14%), Positives = 30/141 (21%), Gaps = 60/141 (42%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFC 146
RH+ H G +P+ C C + F L H++I
Sbjct: 21 HKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI--------------------- 59
Query: 147 RDPLYNDLKILLQHT-------KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHT 199
HT C F DS+ H +
Sbjct: 60 -------------HTGIKPYECNICAKRFMWRDSF-------------------HRHVTS 87
Query: 200 KDKPYECGFCSLKFSRRDNLR 220
K YE +
Sbjct: 88 CTKSYEAAKAEQNTTEASGPS 108
Score = 48.6 bits (117), Expect = 9e-08
Identities = 26/129 (20%), Positives = 40/129 (31%), Gaps = 49/129 (37%)
Query: 96 RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLK 155
+G+K + C C + FT H+ +
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSM------------------------------ 31
Query: 156 ILLQHT--KNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKF 213
H + Y C VC + + H++ HT KPYEC C+ +F
Sbjct: 32 ----HLGLR------------PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
Query: 214 SRRDNLRRH 222
RD+ RH
Sbjct: 76 MWRDSFHRH 84
Score = 43.6 bits (104), Expect = 6e-06
Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 38/123 (30%)
Query: 6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCS 65
SG+K Y C QC K +H+ +H
Sbjct: 3 SGSSGDKLYPC-------------------------QCG----KSFTHKSQRDRH-MSMH 32
Query: 66 YVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
RP + C VC + H++ HTG KP++CN C + F S H+
Sbjct: 33 LGLRP-----YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV-- 85
Query: 126 KHT 128
+
Sbjct: 86 -TS 87
Score = 40.9 bits (97), Expect = 4e-05
Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 36/119 (30%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAK 62
RH+ H G +PY C C K + H+KI K
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK---------------------- 64
Query: 63 RCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQT 121
P + C +C RH+ + K ++ Q T+ +
Sbjct: 65 -------P-----YECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGPSS 109
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 50.0 bits (120), Expect = 1e-08
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
Y C V C +++ + RH+R HT KP++C C FSR D+L H++
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 48.5 bits (116), Expect = 5e-08
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 81 CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
CD RS ++ RHIR HTG+KPF+C C + F+++ L THIR HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT 73
Score = 33.0 bits (76), Expect = 0.011
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 2 RRHLRKHSGEKPYTCYFCN 20
RH+R H+G+KP+ C C
Sbjct: 38 TRHIRIHTGQKPFQCRICM 56
Score = 33.0 bits (76), Expect = 0.013
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 93 RHIRRHTGEKPFKCN--FCFQCFTQNVSLQTHIRIKHT 128
+P+ C C + F+++ L HIRI HT
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI-HT 45
Score = 32.3 bits (74), Expect = 0.028
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 188 NESMKRHLRKHTKDKPYECG--FCSLKFSRRDNLRRHL 223
+ K +PY C C +FSR D L RH+
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHI 41
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 2e-08
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
G+K FKCN C + FTQ+ SL H RI HT
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HT 36
Score = 32.9 bits (76), Expect = 0.008
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
K ++C C F++ +L H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 30.6 bits (70), Expect = 0.062
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
H R HTGEKP +
Sbjct: 30 VHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.26
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
+ C Q+ S+ H R HT +KP
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.78
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 4 HLRKHSGEKPYTCYFC 19
+G+K + C C
Sbjct: 3 SGSSGAGKKLFKCNEC 18
Score = 25.9 bits (58), Expect = 2.3
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 30 VHQRIHTGEKPSGP 43
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 51.0 bits (123), Expect = 2e-08
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 40/132 (30%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
MR+HL H G + + C C S + H + EK
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK-------------------- 61
Query: 61 AKRCSYVPRPNIQFNFTCLV--CDYHSPRSIDMRRHIRRHTGEKPFKCNF--CFQCFTQN 116
P F C C ++R H+R HTG++P+ C F C + F Q+
Sbjct: 62 ---------P-----FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107
Query: 117 VSLQTHIRIKHT 128
+L++HI H
Sbjct: 108 TNLKSHILT-HA 118
Score = 46.7 bits (112), Expect = 6e-07
Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 67/149 (44%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFC 146
+ MR+H+ H G + C C + F ++ L +H +
Sbjct: 19 DNSAMRKHLHTH-GPRVHVCAECGKAFVESSKL-----KRHQLV---------------- 56
Query: 147 RDPLYNDLKILLQHT--KNCKGAFRENDSYRYVCMVCPYHC---------RQNESMKRHL 195
HT K P+ C + +++ H+
Sbjct: 57 -------------HTGEK-------------------PFQCTFEGCGKRFSLDFNLRTHV 84
Query: 196 RKHTKDKPYECGF--CSLKFSRRDNLRRH 222
R HT D+PY C F C+ KF++ NL+ H
Sbjct: 85 RIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 37.1 bits (87), Expect = 0.001
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 182 PYHCRQNE---------SMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
C +M++HL H + + C C F L+RH
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRH 53
Score = 29.8 bits (68), Expect = 0.48
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 101 EKPFKCNF--CFQCFTQNVSLQTHIRI 125
+ C C + F N +++ H+
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHT 29
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 50.3 bits (121), Expect = 2e-08
Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 50/140 (35%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT--RLFGQDKQESTRIYCT 144
S R H + P C + +T++ L+ H+R HT + + CT
Sbjct: 5 SSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRT-HTGEKPYK----------CT 49
Query: 145 FCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPY 204
+ + C F +D + RH RKHT KP+
Sbjct: 50 W----------------EGCDWRFARSDE-----------------LTRHYRKHTGAKPF 76
Query: 205 ECGFCSLKFSRRDNLRRHLK 224
+CG C+ FSR D+L H+K
Sbjct: 77 QCGVCNRSFSRSDHLALHMK 96
Score = 49.5 bits (119), Expect = 4e-08
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
RS ++ RH R+HTG KPF+C C + F+++ L H++ H
Sbjct: 59 RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR-HQ 99
Score = 36.5 bits (85), Expect = 0.002
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
RH RKH+G KP+ C CN + + H+K
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 30.3 bits (69), Expect = 0.18
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 2 RRHLRKHSGEKPYTCYF 18
+ HLR H+GEKPY C +
Sbjct: 34 KAHLRTHTGEKPYKCTW 50
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KC+ C + FT+ L H + HT
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HT 36
Score = 36.7 bits (86), Expect = 3e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F+R+ L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 29.8 bits (68), Expect = 0.11
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 92 RRHIRRHTGEKPFKCN 107
H + HTGE+ +
Sbjct: 29 HIHQQSHTGERHSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C S ++ H +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS 34
Score = 27.5 bits (62), Expect = 0.59
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C + + H + HT ++
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 27.1 bits (61), Expect = 1.0
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 2 RRHLRKHSGEKPYTC 16
H + H+GE+
Sbjct: 29 HIHQQSHTGERHSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKPF+C C + FTQN L +H R+ HT
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HT 36
Score = 36.0 bits (84), Expect = 7e-04
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KP++C C +F++ +L H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 30.2 bits (69), Expect = 0.066
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
F C C ++ + H R HTGEKP +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.14
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
P+ C QN + H R HT +KP
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.25
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
SGEKP+ C C
Sbjct: 2 SSGSSGSGEKPFQCEEC 18
Score = 26.7 bits (60), Expect = 1.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1 MRRHLRKHSGEKPYTC 16
+ H R H+GEKP
Sbjct: 28 LHSHQRVHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 2e-08
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKPFKC C + F QN+ L +H+RI HT
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-HT 36
Score = 35.6 bits (83), Expect = 8e-04
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KP++C C F + +L H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 30.9 bits (71), Expect = 0.042
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
++I + H+R HTGEKP +
Sbjct: 24 QNIHLASHLRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.12
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
P+ C RQN + HLR HT +KP
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.25
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
SGEKP+ C C
Sbjct: 2 SSGSSGSGEKPFKCKEC 18
Score = 27.5 bits (62), Expect = 0.79
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
HLR H+GEKP
Sbjct: 30 SHLRIHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 2e-08
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KCN C + FTQN L H I HT
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HT 36
Score = 36.3 bits (85), Expect = 5e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F++ +L RH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 30.5 bits (70), Expect = 0.057
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
RH HTGEKP +
Sbjct: 30 RHRGIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C QN + RH HT +KP
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.32
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKPY C C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 27.1 bits (61), Expect = 0.87
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
RH H+GEKP
Sbjct: 30 RHRGIHTGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
GEK +KC C CF+Q SL+ H + H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-HV 36
Score = 33.7 bits (78), Expect = 0.004
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+K ++C C + FS+ +LR H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 32.1 bits (74), Expect = 0.014
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 78 CLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
C CD ++ +R H H GEKP +
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.14
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
+ C C Q S++ H H +KP
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.38
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
GEK + C C+ + SS+ H +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV 34
Score = 27.5 bits (62), Expect = 0.59
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 2 RRHLRKHSGEKPYTC 16
R H H GEKP
Sbjct: 29 RLHQNVHVGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 48.3 bits (116), Expect = 2e-08
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
GEKP++C+ C + F+Q SL HIR+ HT
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HT 35
Score = 34.9 bits (81), Expect = 0.002
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+KPY C C FS++ +L H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 29.5 bits (67), Expect = 0.13
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
GEKPY C C + S+ H+++
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 25.2 bits (56), Expect = 4.3
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPY 204
PY C Q S+ H+R HT P
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 25.2 bits (56), Expect = 4.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 94 HIRRHTGEKPF 104
HIR HTG P
Sbjct: 30 HIRVHTGSGPS 40
Score = 24.8 bits (55), Expect = 4.9
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 4 HLRKHSGEKPYT 15
H+R H+G P +
Sbjct: 30 HIRVHTGSGPSS 41
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KCN C + FTQN L H RI HT
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HT 36
Score = 36.3 bits (85), Expect = 5e-04
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F++ +L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 30.2 bits (69), Expect = 0.069
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
++ + H R HTG KP +
Sbjct: 24 QNSHLANHQRIHTGVKPSGPS 44
Score = 29.4 bits (67), Expect = 0.13
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C QN + H R HT KP
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 28.6 bits (65), Expect = 0.26
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKPY C C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 26.7 bits (60), Expect = 1.4
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+G KP
Sbjct: 30 NHQRIHTGVKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+ C C + F + LQ H RI HT
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HT 36
Score = 36.7 bits (86), Expect = 3e-04
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY C C F L+ H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 31.7 bits (73), Expect = 0.023
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C H S + H +I
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI 34
Score = 30.2 bits (69), Expect = 0.073
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
++ H R HTGEKP +
Sbjct: 24 HDSQLQEHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.28
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY+C + ++ H R HT +KP
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.8
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 30 EHQRIHTGEKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
GEK +KC+ C + F+Q+ LQTH R+ HT
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+K Y+C C +FS+ +L+ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 31.0 bits (71), Expect = 0.039
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
+ C VC +S ++ H R HTGEKP +
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.17
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C VC Q+ ++ H R HT +KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.54
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 4 HLRKHSGEKPYTCYFC 19
GEK Y C C
Sbjct: 3 SGSSGMGEKCYKCDVC 18
Score = 26.3 bits (59), Expect = 1.6
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 30 THQRVHTGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 3e-08
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TG KP+ CN C + F+ SL TH I HT
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HT 36
Score = 37.1 bits (87), Expect = 2e-04
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T KPY C C FS +L H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 31.3 bits (72), Expect = 0.033
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+G KPY C C + SS+ H I
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI 34
Score = 30.2 bits (69), Expect = 0.086
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 93 RHIRRHTGEKPFKCN 107
H HTGEKP +
Sbjct: 30 THQVIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.27
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C S+ H HT +KP
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
H H+GEKP
Sbjct: 30 THQVIHTGEKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 47.9 bits (115), Expect = 3e-08
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
GEKP+ C C F +L++H+RI HT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HT 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHL 223
+KPY C C +F L+ HL
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
GEKPY C C + H+ ++ +HL+I
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 32.5 bits (75), Expect = 0.011
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPY 204
Y C +C R +++K HLR HT P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 31.3 bits (72), Expect = 0.024
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPF 104
+ C +C ++ H+R HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 28.6 bits (65), Expect = 0.27
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 1 MRRHLRKHSGEKPYT 15
++ HLR H+G P +
Sbjct: 27 LKSHLRIHTGSGPSS 41
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KCN C + F+Q L H RI HT
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HT 36
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C FS+ L RH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 30.2 bits (69), Expect = 0.065
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
RH R HTGEKP +
Sbjct: 30 RHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.14
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C Q + RH R HT +KP
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.19
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C + S + H +I
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI 34
Score = 26.7 bits (60), Expect = 1.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
RH R H+GEKP
Sbjct: 30 RHQRIHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEK +KCN C + F++N L H +I HT
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HT 36
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +K Y+C C FSR L +H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 30.2 bits (69), Expect = 0.065
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H + HTGEKP +
Sbjct: 30 QHQKIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.19
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
Y C +N + +H + HT +KP
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.25
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEK Y C C + S ++ H KI
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI 34
Score = 26.7 bits (60), Expect = 1.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H + H+GEKP
Sbjct: 30 QHQKIHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 4e-08
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KCN C + F N L H RI HT
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HT 36
Score = 37.1 bits (87), Expect = 2e-04
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F L RH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 30.6 bits (70), Expect = 0.047
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C H S ++ H +I
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI 34
Score = 30.6 bits (70), Expect = 0.060
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
RH R HTGEKP +
Sbjct: 30 RHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.13
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C R N + RH R HT +KP
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
RH R H+GEKP
Sbjct: 30 RHQRIHTGEKPSGP 43
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 48.6 bits (117), Expect = 5e-08
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 92 RRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
H HTGEKP++CN C F + +L+TH RI H+
Sbjct: 34 ASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HS 69
Score = 48.2 bits (116), Expect = 5e-08
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 92 RRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
H +KP+KC+ C F +L +H + HT
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV-HT 41
Score = 40.9 bits (97), Expect = 2e-05
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
Y C C R ++ H HT +KPY C C +F+R NL+ H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 35.9 bits (84), Expect = 0.001
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
H DKPY+C C F + NL H
Sbjct: 7 HHSHMTHSDKPYKCDRCQASFRYKGNLASH 36
Score = 30.5 bits (70), Expect = 0.100
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 34/103 (33%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
H +KPY C C + ++ +H + EK
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK--------------------- 44
Query: 62 KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPF 104
P + C +C R +++ H R H+GEKP+
Sbjct: 45 ------P-------YRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKPFKC C + F++ +L H ++ HT
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HT 36
Score = 36.0 bits (84), Expect = 6e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KP++C C FSRR L H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 29.4 bits (67), Expect = 0.16
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
F C+ C R + H + HTGEKP +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.18
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKP+ C C + S++N H K+
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL 34
Score = 27.9 bits (63), Expect = 0.49
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
+ C+ C + ++ H + HT +KP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.0
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 2 RRHLRKHSGEKPYTC 16
H + H+GEKP
Sbjct: 29 NVHHKLHTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGE+P+ C C + FT +L H +I HT
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HT 36
Score = 36.7 bits (86), Expect = 3e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T ++PY C C F+ R NL +H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 29.8 bits (68), Expect = 0.10
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y+C VC ++ +H + HT +KP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.10
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GE+PY C C S++ H KI
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI 34
Score = 29.8 bits (68), Expect = 0.11
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H + HTGEKP +
Sbjct: 30 KHQKIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H + H+GEKP
Sbjct: 30 KHQKIHTGEKPSGP 43
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 48.6 bits (117), Expect = 5e-08
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+ DM++H HTGEKP KC C + F+Q+ +L TH R HT
Sbjct: 41 QKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK-HT 81
Score = 46.3 bits (111), Expect = 3e-07
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
RS + H+ H+ +P+ C +C + F Q ++ H I HT
Sbjct: 13 RSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HT 53
Score = 40.1 bits (95), Expect = 6e-05
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
PY C Q MK+H HT +KP++C C FS+ NL H
Sbjct: 29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 37.0 bits (87), Expect = 7e-04
Identities = 11/47 (23%), Positives = 28/47 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ C +C +++ ++ HL H+ +PY C +C +F ++ ++++H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 30.1 bits (69), Expect = 0.19
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 3 RHLRKHSGEKPYTCYFC 19
HL HS +PY C +C
Sbjct: 19 THLLIHSDTRPYPCQYC 35
Score = 28.5 bits (65), Expect = 0.54
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 1 MRRHLRKHSGEKPYTCYFC 19
M++H H+GEKP+ C C
Sbjct: 45 MKKHTFIHTGEKPHKCQVC 63
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKPF+C C + F+ + L TH RI HT
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRI-HT 36
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KP+EC C FS L H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 29.8 bits (68), Expect = 0.11
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKP+ C C + S + H +I
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRI 34
Score = 28.2 bits (64), Expect = 0.32
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 87 RSIDMRRHIRRHTGEKPFKC 106
S + H R HTGEKP
Sbjct: 24 ISSQLATHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.34
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
P+ C + + H R HT +KP
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.6
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 30 THQRIHTGEKPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP++C C + FT +L TH +I HT
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HT 36
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY C C F+ R NL H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 28.6 bits (65), Expect = 0.26
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C ++ H + HT +KP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.32
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C S++ H KI
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI 34
Score = 27.9 bits (63), Expect = 0.52
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 92 RRHIRRHTGEKPFKC 106
H + HTGEKP
Sbjct: 29 FTHQKIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.4
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 2 RRHLRKHSGEKPYTC 16
H + H+GEKP
Sbjct: 29 FTHQKIHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP++C C + F Q +L H RI HT
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI-HT 36
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY CG C F+++ NL +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 29.8 bits (68), Expect = 0.10
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H R HTGEKP +
Sbjct: 30 QHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.21
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKPY C C
Sbjct: 2 SSGSSGTGEKPYRCGEC 18
Score = 27.9 bits (63), Expect = 0.47
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C Q ++ +H R HT +KP
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H R H+GEKP
Sbjct: 30 QHQRIHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 6e-08
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGE+P KCN C + F Q+ L H RI HT
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HT 36
Score = 36.3 bits (85), Expect = 5e-04
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T ++P++C C F + +L +H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 30.2 bits (69), Expect = 0.076
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H R HTGEKP +
Sbjct: 30 QHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.20
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
P+ C Q+ + +H R HT +KP
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.26
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GE+P+ C C
Sbjct: 2 SSGSSGTGERPHKCNEC 18
Score = 27.1 bits (61), Expect = 0.98
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H R H+GEKP
Sbjct: 30 QHQRIHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 6e-08
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KC+ C + F +N L H I HT
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HT 36
Score = 36.3 bits (85), Expect = 4e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F R +L RH
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 30.9 bits (71), Expect = 0.045
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
R+ + RH HTGEKP +
Sbjct: 24 RNSHLARHQLIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.17
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C R+N + RH HT +KP
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.20
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCHEC 18
Score = 26.7 bits (60), Expect = 1.3
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
RH H+GEKP
Sbjct: 30 RHQLIHTGEKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 6e-08
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KCN C + F SL H H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HS 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F R +L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 30.2 bits (69), Expect = 0.073
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 92 RRHIRRHTGEKPFKCN 107
H H+GEKP +
Sbjct: 29 AIHQATHSGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.10
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C R S+ H H+ +KP
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.18
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C SS+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT 34
Score = 26.7 bits (60), Expect = 1.3
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 2 RRHLRKHSGEKPYTC 16
H HSGEKP
Sbjct: 29 AIHQATHSGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKP+KC+ C + F ++ L H RI HT
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HT 36
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KPY+C C F R +L H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 30.9 bits (71), Expect = 0.044
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 93 RHIRRHTGEKPFKCN 107
H R HTG +P +
Sbjct: 30 EHRRIHTGYRPSGPS 44
Score = 28.6 bits (65), Expect = 0.24
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
SGEKPY C C
Sbjct: 2 SSGSSGSGEKPYKCSEC 18
Score = 28.2 bits (64), Expect = 0.40
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C ++ + H R HT +P
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+G +P
Sbjct: 30 EHRRIHTGYRPSGP 43
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 47.9 bits (115), Expect = 7e-08
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 47/116 (40%)
Query: 98 HTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT--RLFGQDKQESTRIYCTFCRDPLYND 153
+G C+F C + F+ L H + +H + F C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSF----------SCPE-------- 43
Query: 154 LKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFC 209
C +F + +K H++ H+ + Y C F
Sbjct: 44 --------PACGKSF-----------------NFKKHLKEHMKLHSDTRDYICEFS 74
Score = 44.5 bits (106), Expect = 1e-06
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 87 RSIDMRRHIR-RHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
+ H + +H +K F C C + F L+ H+++ H+
Sbjct: 21 NRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HS 64
Score = 44.5 bits (106), Expect = 2e-06
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 37/110 (33%)
Query: 8 HSGEKPYTCYF--CNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCS 65
SG C F C ++ +N+H K +H H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH--------------IHQ----------- 36
Query: 66 YVPRPNIQFNFTC--LVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCF 113
+ F+C C ++ H++ H+ + + C F
Sbjct: 37 ---KS-----FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 33.3 bits (77), Expect = 0.011
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 12/53 (22%)
Query: 182 PYHC---------RQNESMKRHLR-KHTKDKPYECGF--CSLKFSRRDNLRRH 222
C + + H + +H K + C C F+ + +L+ H
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
Score = 32.9 bits (76), Expect = 0.017
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 2 RRHLRKHSGEKPYTCYFC 19
+ H++ HS + Y C F
Sbjct: 57 KEHMKLHSDTRDYICEFS 74
Score = 32.1 bits (74), Expect = 0.031
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 198 HTKDKPYECGF--CSLKFSRRDNLRRHLKDQH 227
+ C F C FS R L H K QH
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKPFKC C + + Q V L H R+ HT
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HT 36
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KP++CG C +++R +L +H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 30.6 bits (70), Expect = 0.060
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H R HTGEKP +
Sbjct: 30 QHQRVHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.27
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
P+ C Q + +H R HT +KP
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.30
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKP+ C C
Sbjct: 2 SSGSSGTGEKPFKCGEC 18
Score = 26.7 bits (60), Expect = 1.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H R H+GEKP
Sbjct: 30 QHQRVHTGEKPSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 49.0 bits (116), Expect = 8e-08
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 13/121 (10%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFC 146
+ + TG F+C C + V L H+ + ++
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN----NNPK 58
Query: 147 RDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRK--HTKDKPY 204
R +L K E+ CM C + + + H+ K H +
Sbjct: 59 RWSKPRKRSLLEMEGK-------EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
Query: 205 E 205
Sbjct: 112 P 112
Score = 42.8 bits (100), Expect = 1e-05
Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 30/130 (23%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQH 60
+ + +G + C C+ + + H+ H
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE----------------------TGH 44
Query: 61 AKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQ 120
+ ++ + PR + + +K KC +C F L
Sbjct: 45 YRDDNHET-------DNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLS 97
Query: 121 TH-IRIKHTR 129
H I+ KH +
Sbjct: 98 VHMIKTKHYQ 107
Score = 36.7 bits (84), Expect = 0.002
Identities = 12/80 (15%), Positives = 22/80 (27%)
Query: 187 QNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLI 246
S K + T + C CS + L H+ + Y T
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 247 VKGSNISTMRVTSPSSQELT 266
+ ++ M + + L
Sbjct: 63 PRKRSLLEMEGKEDAQKVLK 82
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
G P+KC+ C + F+ + L H R+ HT
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HT 36
Score = 33.3 bits (77), Expect = 0.007
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
PY+C C FS + L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 31.0 bits (71), Expect = 0.039
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 78 CLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
C C+ + + H R HT EKP +
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 28.7 bits (65), Expect = 0.28
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C + H R HT++KP
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 26.3 bits (59), Expect = 1.7
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+G PY C C + + H ++
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM 34
Score = 26.3 bits (59), Expect = 1.7
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 2 RRHLRKHSGEKPYTC 16
H R H+ EKP
Sbjct: 29 LVHQRMHTREKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKPF+C+ C + F +L H R HT
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HT 36
Score = 36.7 bits (86), Expect = 3e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KP+EC C F+ + NL H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 29.4 bits (67), Expect = 0.17
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKP+ C C
Sbjct: 2 SSGSSGTGEKPFECSEC 18
Score = 28.6 bits (65), Expect = 0.25
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 93 RHIRRHTGEKPFKC 106
H R HTGEKP
Sbjct: 30 VHQRTHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.28
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
+ C C ++ H R HT +KP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.2
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 30 VHQRTHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 9e-08
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KCN C + F + +L TH I HT
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HT 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F NL H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 29.8 bits (68), Expect = 0.094
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 93 RHIRRHTGEKPFKCN 107
H HTGEKP +
Sbjct: 30 THQVIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.29
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C S++ H I
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI 34
Score = 28.2 bits (64), Expect = 0.31
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C R + ++ H HT +KP
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.7
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
H H+GEKP
Sbjct: 30 THQVIHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 1e-07
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KC+ C + FT L+ H + HT
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HT 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F+ + LR H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 30.6 bits (70), Expect = 0.059
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 92 RRHIRRHTGEKPFKCN 107
R H + HTGE+ +
Sbjct: 29 RIHQKCHTGERHSGPS 44
Score = 28.7 bits (65), Expect = 0.24
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C S + H K
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC 34
Score = 28.3 bits (64), Expect = 0.31
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C ++ H + HT ++
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 27.9 bits (63), Expect = 0.48
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 2 RRHLRKHSGEKPYTC 16
R H + H+GE+
Sbjct: 29 RIHQKCHTGERHSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KC+ C + F SL H RI HT
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HT 36
Score = 33.6 bits (78), Expect = 0.004
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F +L H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 30.2 bits (69), Expect = 0.079
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
H R HTGEKP +
Sbjct: 30 VHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.18
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C R S+ H R HT +KP
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.19
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C+ + SS+ H +I
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI 34
Score = 26.3 bits (59), Expect = 2.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 30 VHQRIHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 1e-07
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP++C C + FTQ L H + HT
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HT 36
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPYEC CS F+++ +L +H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 29.8 bits (68), Expect = 0.11
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H + HTGEKP +
Sbjct: 30 QHQKTHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.23
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKPY C C
Sbjct: 2 SSGSSGTGEKPYECKVC 18
Score = 28.7 bits (65), Expect = 0.26
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C Q + +H + HT +KP
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.00
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H + H+GEKP
Sbjct: 30 QHQKTHTGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 1e-07
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP++CN C + F+ SL TH I HT
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HT 36
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPYEC C FS R +L H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 29.8 bits (68), Expect = 0.099
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 93 RHIRRHTGEKPFKCN 107
H HTG+KP +
Sbjct: 30 THQAIHTGKKPSGPS 44
Score = 29.8 bits (68), Expect = 0.10
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C + SS+ H I
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI 34
Score = 29.4 bits (67), Expect = 0.15
Identities = 9/32 (28%), Positives = 10/32 (31%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C S+ H HT KP
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 26.3 bits (59), Expect = 1.7
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
H H+G+KP
Sbjct: 30 THQAIHTGKKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 1e-07
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KC C + F L TH + HT
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F R +L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 30.6 bits (70), Expect = 0.048
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 78 CLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
C C D+ H HTGEKP +
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.25
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C + H HT +KP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.36
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C + H +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV 34
Score = 27.1 bits (61), Expect = 1.1
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 2 RRHLRKHSGEKPYTC 16
H H+GEKP
Sbjct: 29 YTHHMVHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 46.4 bits (111), Expect = 1e-07
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+ C C + F L H R+ H+
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HS 36
Score = 36.4 bits (85), Expect = 4e-04
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY C C F L +H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 31.0 bits (71), Expect = 0.033
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+GEKPY C C S + H ++ EK
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 31.0 bits (71), Expect = 0.044
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY+C R + +H R H+ +KP
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.10
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H R H+GEKP +
Sbjct: 30 KHQRVHSGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.53
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H R HSGEKP
Sbjct: 30 KHQRVHSGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 1e-07
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKPFKC+ C + F L H + HT
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HT 36
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KP++C C F R L RH
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 30.9 bits (71), Expect = 0.043
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 93 RHIRRHTGEKPFKCN 107
RH HT EKP +
Sbjct: 30 RHSMVHTAEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.074
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
+ C +C + RH HT +KP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 29.0 bits (66), Expect = 0.22
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKP+ C C S +N H +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV 34
Score = 27.5 bits (62), Expect = 0.64
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
RH H+ EKP
Sbjct: 30 RHSMVHTAEKPSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 46.4 bits (111), Expect = 1e-07
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TG+KP++C C + F QN SL H R HT
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT 37
Score = 37.2 bits (87), Expect = 3e-04
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
T KPYEC C F + +L RH + H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 28.7 bits (65), Expect = 0.25
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKH 37
+G+KPY C C +S+ H + H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 28.3 bits (64), Expect = 0.33
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 182 PYHC-------RQNESMKRHLRK-HTKDKPYEC 206
PY C QN S+ RH R HT +KP
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 28.3 bits (64), Expect = 0.36
Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 93 RHIRR-HTGEKPFKCN 107
RH R HTGEKP +
Sbjct: 30 RHWRYYHTGEKPSGPS 45
Score = 25.2 bits (56), Expect = 4.9
Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 1/15 (6%)
Query: 3 RHLRK-HSGEKPYTC 16
RH R H+GEKP
Sbjct: 30 RHWRYYHTGEKPSGP 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 1e-07
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KCN C + FTQN L H I HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HT 36
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F++ +L RH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 30.5 bits (70), Expect = 0.058
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
RH HTGEKP +
Sbjct: 30 RHRGIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.14
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C QN + RH HT +KP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.91
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
RH H+GEKP
Sbjct: 30 RHRGIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 4 HLRKHSGEKPYTCYFC 19
+GEKPY C C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 1e-07
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TG+KP+KCN C + FTQN L H I HT
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T KPY+C C F++ +L RH
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 30.6 bits (70), Expect = 0.048
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
RH HTGEKP +
Sbjct: 30 RHRGIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.11
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C QN + RH HT +KP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.94
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
RH H+GEKP
Sbjct: 30 RHRGIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 4 HLRKHSGEKPYTCYFC 19
+G+KPY C C
Sbjct: 3 SGSSGTGKKPYKCNEC 18
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 1e-07
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP++C+ C + F+ SL H RI H+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HS 36
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPYEC C FS R +L H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 30.6 bits (70), Expect = 0.060
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C +H S++ H +I
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI 34
Score = 29.8 bits (68), Expect = 0.11
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 94 HIRRHTGEKPFKCN 107
H R H+G+KP +
Sbjct: 31 HQRIHSGKKPSGPS 44
Score = 28.6 bits (65), Expect = 0.31
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C +S+ H R H+ KP
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 26.7 bits (60), Expect = 1.2
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 4 HLRKHSGEKPYTC 16
H R HSG+KP
Sbjct: 31 HQRIHSGKKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 1e-07
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKPF C C + F+ ++ L H RI HT
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HT 36
Score = 35.6 bits (83), Expect = 8e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KP++C C FS L +H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 29.8 bits (68), Expect = 0.12
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKP+ C C + +N H +I
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI 34
Score = 29.4 bits (67), Expect = 0.15
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
P+ C + + +H R HT +KP
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.31
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H R HTGEKP +
Sbjct: 30 QHRRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H R H+GEKP
Sbjct: 30 QHRRIHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 1e-07
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP +C C + F+ N L H RI HT
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HT 36
Score = 35.6 bits (83), Expect = 8e-04
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KP+EC C FS L H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 29.4 bits (67), Expect = 0.14
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 93 RHIRRHTGEKPFKCN 107
H R HTGE P +
Sbjct: 30 VHQRIHTGENPSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKP+ C C
Sbjct: 2 SSGSSGTGEKPHECREC 18
Score = 28.7 bits (65), Expect = 0.27
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
P+ C N + H R HT + P
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 26.3 bits (59), Expect = 1.7
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GE P
Sbjct: 30 VHQRIHTGENPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 1e-07
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
GEKP+ C+ C + F+ L H+R H+
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HS 36
Score = 36.4 bits (85), Expect = 5e-04
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+KPY C C FS + L H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 30.2 bits (69), Expect = 0.072
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKPY C C
Sbjct: 2 SSGSSGAGEKPYGCSEC 18
Score = 28.7 bits (65), Expect = 0.29
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 93 RHIRRHTGEKPFKC 106
H+R H+GEKP
Sbjct: 30 IHMRTHSGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.42
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C + H+R H+ +KP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.61
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
H+R HSGEKP
Sbjct: 30 IHMRTHSGEKPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKP++CN C + F L H R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERT-HA 36
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KPYEC C F + L H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 29.4 bits (67), Expect = 0.11
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
SGEKPY C C
Sbjct: 2 SSGSSGSGEKPYECNEC 18
Score = 27.9 bits (63), Expect = 0.43
Identities = 7/33 (21%), Positives = 8/33 (24%), Gaps = 7/33 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYECG 207
PY C + H R H G
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTHAGVSGPSSG 44
Score = 26.3 bits (59), Expect = 1.5
Identities = 4/15 (26%), Positives = 4/15 (26%)
Query: 92 RRHIRRHTGEKPFKC 106
H R H G
Sbjct: 29 IVHERTHAGVSGPSS 43
Score = 26.0 bits (58), Expect = 2.6
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 2 RRHLRKHSGEKPYTC 16
H R H+G +
Sbjct: 29 IVHERTHAGVSGPSS 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KC C + + +L H ++ HT
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-HT 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C ++ + NL H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 30.2 bits (69), Expect = 0.085
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
H + HTGE+P +
Sbjct: 30 MHQKVHTGERPSGPS 44
Score = 29.8 bits (68), Expect = 0.12
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C ++ H + HT ++P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 27.9 bits (63), Expect = 0.46
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C +++ H K+
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV 34
Score = 26.7 bits (60), Expect = 1.2
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H + H+GE+P
Sbjct: 30 MHQKVHTGERPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.9 bits (110), Expect = 2e-07
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+ EKP+KC C + + + ++L H R+ H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HM 36
Score = 36.3 bits (85), Expect = 5e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KPY+C C ++RR NL H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 30.2 bits (69), Expect = 0.073
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
R +++ H R H GEK +
Sbjct: 24 RRLNLDMHQRVHMGEKTSGPS 44
Score = 28.6 bits (65), Expect = 0.30
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 4 HLRKHSGEKPYTCYFC 19
S EKPY C C
Sbjct: 3 SGSSGSVEKPYKCEDC 18
Score = 27.5 bits (62), Expect = 0.73
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C + ++ H R H +K
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 26.3 bits (59), Expect = 2.0
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 3 RHLRKHSGEKPYTC 16
H R H GEK
Sbjct: 30 MHQRVHMGEKTSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKP+KC C + + + + L H R+ HT
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HT 36
Score = 36.7 bits (86), Expect = 3e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KPY+C C + RR +L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 30.6 bits (70), Expect = 0.049
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
R +D+ H R HTGEK +
Sbjct: 24 RRLDLDFHQRVHTGEKLSGPS 44
Score = 29.0 bits (66), Expect = 0.20
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C ++ + H R HT +K
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 28.3 bits (64), Expect = 0.41
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 4 HLRKHSGEKPYTCYFC 19
SGEKPY C C
Sbjct: 3 SGSSGSGEKPYKCVEC 18
Score = 27.1 bits (61), Expect = 1.0
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 2 RRHLRKHSGEKPYTC 16
H R H+GEK
Sbjct: 29 DFHQRVHTGEKLSGP 43
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 47.1 bits (113), Expect = 2e-07
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
S D+ +H R HTGEKP+KC+ C + F Q L H R+ HT
Sbjct: 30 HSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HT 70
Score = 46.3 bits (111), Expect = 3e-07
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 88 SIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
S R + + +KC+ C + F+ + L H R HT
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HT 42
Score = 38.2 bits (90), Expect = 2e-04
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
Y C C + + +H R HT +KPY+C C F +R +L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 37.8 bits (89), Expect = 3e-04
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 187 QNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ S R + + + Y+C C FS +L +H
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37
Score = 29.3 bits (67), Expect = 0.34
Identities = 18/104 (17%), Positives = 27/104 (25%), Gaps = 34/104 (32%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
R + + Y C C +H S ++ H + EK
Sbjct: 7 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEK--------------------- 45
Query: 62 KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFK 105
P + C C + + H R HTG P
Sbjct: 46 ------P-------YKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEK + C C + F++ L H R+ H+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HS 36
Score = 36.0 bits (84), Expect = 6e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +K Y C C FSR L +H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 31.3 bits (72), Expect = 0.029
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
R+ + +H R H+GEKP +
Sbjct: 24 RAPCLLKHERLHSGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.27
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
Y+C + + +H R H+ +KP
Sbjct: 12 LYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.29
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 4 HLRKHSGEKPYTCYFC 19
+GEK Y C C
Sbjct: 3 SGSSGTGEKLYNCKEC 18
Score = 27.5 bits (62), Expect = 0.72
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H R HSGEKP
Sbjct: 30 KHERLHSGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.9 bits (110), Expect = 2e-07
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TG KP+ CN C + F L H R HT
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HT 36
Score = 36.3 bits (85), Expect = 5e-04
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T KPY C C F + L H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 30.9 bits (71), Expect = 0.037
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECG 207
YVC C R + H R HT + G
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44
Score = 29.0 bits (66), Expect = 0.19
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+G KPY C C
Sbjct: 2 SSGSSGTGMKPYVCNEC 18
Score = 29.0 bits (66), Expect = 0.20
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 87 RSIDMRRHIRRHTGEKPFKC 106
+ H R HTGE
Sbjct: 24 SKSYLIIHTRTHTGESGPSS 43
Score = 27.4 bits (62), Expect = 0.73
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 2 RRHLRKHSGEKPYTC 16
H R H+GE +
Sbjct: 29 IIHTRTHTGESGPSS 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGE PF C+ C + FT +L H +I HT
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKI-HT 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T + P+ C C F+ + NL H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 29.4 bits (67), Expect = 0.14
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
H + HTGE+P +
Sbjct: 30 IHQKIHTGERPSGPS 44
Score = 28.2 bits (64), Expect = 0.32
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GE P+ C C H +++ H KI
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKI 34
Score = 27.5 bits (62), Expect = 0.59
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
++C C ++ H + HT ++P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 26.7 bits (60), Expect = 1.4
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H + H+GE+P
Sbjct: 30 IHQKIHTGERPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+ CN C + F Q L H RI HT
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HT 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY C C F ++ +L RH
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 30.6 bits (70), Expect = 0.058
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
+ + RH R HTGEKP +
Sbjct: 24 QKSHLNRHRRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.22
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C Q + RH R HT +KP
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.82
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 4 HLRKHSGEKPYTCYFC 19
+GEKPY C C
Sbjct: 3 SGSSGTGEKPYICNEC 18
Score = 27.1 bits (61), Expect = 0.93
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
RH R H+GEKP
Sbjct: 30 RHRRIHTGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKPFKC C + F N +H R H+
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HS 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KP++C C F H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 29.4 bits (67), Expect = 0.14
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
F C C + H R H+GEKP +
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 29.1 bits (66), Expect = 0.17
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
+ C C N H R H+ +KP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.32
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
SGEKP+ C C S +H +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS 34
Score = 27.9 bits (63), Expect = 0.47
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 2 RRHLRKHSGEKPYTC 16
H R HSGEKP
Sbjct: 29 YSHQRSHSGEKPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GE+PFKCN C + F + L H+R+ H+
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL-HS 36
Score = 34.0 bits (79), Expect = 0.004
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ ++P++C C F RR +L H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 31.0 bits (71), Expect = 0.040
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
R + H+R H+ EK +
Sbjct: 24 RRSHLAGHLRLHSREKSSGPS 44
Score = 28.7 bits (65), Expect = 0.30
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
P+ C + + HLR H+++K
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 27.5 bits (62), Expect = 0.62
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
HLR HS EK
Sbjct: 30 GHLRLHSREKSSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
SGE+P+ C C S + HL++
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL 34
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KCN C + FTQN L H R+ HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HT 36
Score = 33.6 bits (78), Expect = 0.004
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F++ +L RH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 30.6 bits (70), Expect = 0.058
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
RH R HTG KP +
Sbjct: 30 RHRRVHTGGKPSGPS 44
Score = 29.4 bits (67), Expect = 0.14
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C QN + RH R HT KP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 27.1 bits (61), Expect = 0.90
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
RH R H+G KP
Sbjct: 30 RHRRVHTGGKPSGP 43
Score = 26.3 bits (59), Expect = 1.6
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 4 HLRKHSGEKPYTCYFC 19
+GEKPY C C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TG++P++C C + F SL H R HT
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS-HT 36
Score = 36.4 bits (85), Expect = 5e-04
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +PYEC C F + +L H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 29.8 bits (68), Expect = 0.094
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+G++PY C C SS+ H +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS 34
Score = 29.8 bits (68), Expect = 0.096
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
H R HTGEKP +
Sbjct: 30 CHRRSHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.14
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C + S+ H R HT +KP
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 30 CHRRSHTGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKP+ CN C + F+Q L H R HT
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HT 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KPY C C FS++ L H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 30.2 bits (69), Expect = 0.068
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
H R HTGEKP +
Sbjct: 30 AHQRTHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.10
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C Q + H R HT +KP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.38
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
SGEKPY C C + S ++ H +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT 34
Score = 27.5 bits (62), Expect = 0.62
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 30 AHQRTHTGEKPSGP 43
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 45.8 bits (109), Expect = 2e-07
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 94 HIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
TGEKPF C + C F+++ L H R H+
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HS 38
Score = 42.3 bits (100), Expect = 5e-06
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 194 HLRKHTKDKPYECGF--CSLKFSRRDNLRRHLK 224
T +KP+ C + C +FSR D L RH +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR 35
Score = 36.1 bits (84), Expect = 6e-04
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
RS ++ RH R H+G KP +
Sbjct: 26 RSDELSRHRRSHSGVKPSGPS 46
Score = 31.1 bits (71), Expect = 0.038
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 9/34 (26%)
Query: 182 PYHC---------RQNESMKRHLRKHTKDKPYEC 206
P+ C +++ + RH R H+ KP
Sbjct: 12 PFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 30.3 bits (69), Expect = 0.070
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
RH R HSG KP
Sbjct: 32 RHRRSHSGVKPSGP 45
Score = 30.3 bits (69), Expect = 0.072
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 4 HLRKHSGEKPYTCYF 18
+GEKP+ C +
Sbjct: 3 SGSSGTGEKPFACTW 17
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TG KP+ C+ C + F+ L H R HT
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HT 36
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T KPY C C+ FS + L H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 29.4 bits (67), Expect = 0.13
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 94 HIRRHTGEKPFKCN 107
H R HTG KP +
Sbjct: 31 HQRSHTGVKPSGPS 44
Score = 29.0 bits (66), Expect = 0.18
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+G KPY C C
Sbjct: 2 SSGSSGTGVKPYGCSQC 18
Score = 28.3 bits (64), Expect = 0.39
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C + H R HT KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 26.7 bits (60), Expect = 1.2
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 4 HLRKHSGEKPYTC 16
H R H+G KP
Sbjct: 31 HQRSHTGVKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.5 bits (109), Expect = 3e-07
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP++CN C + F +L H R HT
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HT 36
Score = 36.7 bits (86), Expect = 3e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPYEC C F+ + NL H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 31.3 bits (72), Expect = 0.027
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECG 207
Y C C ++ H R HT + G
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
Score = 28.2 bits (64), Expect = 0.35
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 94 HIRRHTGEKPFKC 106
H R HTGE
Sbjct: 31 HQRTHTGESGPSS 43
Score = 27.8 bits (63), Expect = 0.49
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 4 HLRKHSGEKPYTCYFC 19
+GEKPY C C
Sbjct: 3 SGSSGTGEKPYECNEC 18
Score = 26.7 bits (60), Expect = 1.2
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 4 HLRKHSGEKPYTC 16
H R H+GE +
Sbjct: 31 HQRTHTGESGPSS 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP++C+ C + FT+ L H +I HT
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI-HT 36
Score = 36.7 bits (86), Expect = 3e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPYEC C F+++ L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 29.0 bits (66), Expect = 0.21
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 94 HIRRHTGEKPFKCN 107
H + HTGEKP +
Sbjct: 31 HQQIHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.22
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C S ++ H +I
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI 34
Score = 28.3 bits (64), Expect = 0.32
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C +C + + H + HT +KP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.6
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 4 HLRKHSGEKPYTC 16
H + H+GEKP
Sbjct: 31 HQQIHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+ CN C + F + L H+R+ HT
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY C C F +L +H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 29.8 bits (68), Expect = 0.10
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C VC + + +HLR HT++
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 28.6 bits (65), Expect = 0.24
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCN 107
++C VC S + +H+R HT E +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 27.9 bits (63), Expect = 0.50
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKPY+C C
Sbjct: 2 SSGSSGTGEKPYSCNVC 18
Score = 27.5 bits (62), Expect = 0.79
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
+HLR H+ E
Sbjct: 30 QHLRVHTQETLSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP++C C + F+Q L H R+ HT
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HT 36
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPYEC C FS+ +L +H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 30.2 bits (69), Expect = 0.080
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H R HTGEKP +
Sbjct: 30 QHQRVHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.24
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C Q + +H R HT +KP
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.39
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKPY C C
Sbjct: 2 SSGSSGTGEKPYECKEC 18
Score = 27.1 bits (61), Expect = 0.91
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H R H+GEKP
Sbjct: 30 QHQRVHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKP+ C++C + F + L H RI HT
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HT 36
Score = 36.3 bits (85), Expect = 6e-04
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KPY C +C F L RH
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 30.2 bits (69), Expect = 0.068
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
SGEKPY C +C + + H +I
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI 34
Score = 30.2 bits (69), Expect = 0.068
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
S ++ RH R HTGEKP +
Sbjct: 24 LSAELVRHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
YVC C + + RH R HT +KP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
RH R H+GEKP
Sbjct: 30 RHQRIHTGEKPSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.3 bits (108), Expect = 3e-07
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
TGEKPF+C C F+ + SL H+R H R
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HER 37
Score = 36.8 bits (86), Expect = 4e-04
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
T +KP++C C + FS +L +HL+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR 33
Score = 30.6 bits (70), Expect = 0.046
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 87 RSIDMRRHIRRHTGEKPFKC 106
S + +H+R H P
Sbjct: 24 WSCSLFKHLRSHERTDPSGP 43
Score = 30.2 bits (69), Expect = 0.072
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 182 PYHCRQ-------NESMKRHLRKHTKDKPYECG 207
P+ C++ + S+ +HLR H + P
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 29.9 bits (68), Expect = 0.10
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 2 RRHLRKHSGEKPYTCY 17
+HLR H P
Sbjct: 29 FKHLRSHERTDPSGPS 44
Score = 29.5 bits (67), Expect = 0.15
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+GEKP+ C C + S+ HL+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTD 39
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 45.2 bits (108), Expect = 3e-07
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TG+KPF+C C + F +L TH RI HT
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HT 36
Score = 35.6 bits (83), Expect = 8e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T KP+EC C F + NL H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 29.8 bits (68), Expect = 0.085
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 93 RHIRRHTGEKPFKCN 107
H R HTGEK +
Sbjct: 30 THQRIHTGEKSGPSS 44
Score = 29.8 bits (68), Expect = 0.11
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
P+ C R ++ H R HT +K
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 27.9 bits (63), Expect = 0.43
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+G+KP+ C C ++ H +I EK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 26.7 bits (60), Expect = 1.4
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEK
Sbjct: 30 THQRIHTGEKSGPS 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+ K +C+ C + FT L H RI HT
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HT 36
Score = 33.7 bits (78), Expect = 0.005
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ K ++C C F+ + +L +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 27.5 bits (62), Expect = 0.64
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
S K + C+ C S +N H +I
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI 34
Score = 26.4 bits (59), Expect = 1.7
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
+ C C + +H R HT +KP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 2.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 93 RHIRRHTGEKPFKC 106
+H R HTGEKP
Sbjct: 30 QHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 3.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H R H+GEKP
Sbjct: 30 QHQRIHTGEKPSGP 43
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 45.9 bits (110), Expect = 3e-07
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
RS + +H R HTGEKP+KC C + F+QN L H RI HT
Sbjct: 26 RSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HT 66
Score = 44.8 bits (107), Expect = 9e-07
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
H+GEKP+ C C + F+++ L H R+ HT
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRV-HT 38
Score = 39.4 bits (93), Expect = 8e-05
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
PY C ++ + +H R HT +KPY+C C FS+ L H
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 35.9 bits (84), Expect = 0.001
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
H+ +KPY C C FSR L +H
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
Score = 28.6 bits (65), Expect = 0.49
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
HSGEKPY C C + S + H ++
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRV 36
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP++C+ C + F+ + SL H R+ H+
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HS 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPYEC C FS +L +H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 30.6 bits (70), Expect = 0.056
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H R H+GEKP +
Sbjct: 30 QHQRVHSGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.094
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C +H +S+ H ++
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV 34
Score = 28.6 bits (65), Expect = 0.28
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C + S+ +H R H+ +KP
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H R HSGEKP
Sbjct: 30 QHQRVHSGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
GE+ +C+ C + F Q + H RI HT
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI-HT 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
++ + C C F + N +H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 28.3 bits (64), Expect = 0.35
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
GE+ + C C S+ H +I
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34
Score = 26.7 bits (60), Expect = 1.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H R HTGEKP +
Sbjct: 30 QHRRIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.4
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
+ C C Q + +H R HT +KP
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 3.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H R H+GEKP
Sbjct: 30 QHRRIHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.3 bits (108), Expect = 3e-07
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KC C + F N S H R+ HT
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HT 36
Score = 34.9 bits (81), Expect = 0.001
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F + +H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 29.9 bits (68), Expect = 0.11
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
+H R HTG++P +
Sbjct: 30 QHQRLHTGQRPSGPS 44
Score = 29.5 bits (67), Expect = 0.12
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C SS H ++
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL 34
Score = 29.1 bits (66), Expect = 0.18
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C N S +H R HT +P
Sbjct: 12 PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 26.8 bits (60), Expect = 1.4
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
+H R H+G++P
Sbjct: 30 QHQRLHTGQRPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TG K F+C C + FT+ +L H +I HT
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HT 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T K +EC C F+R+ L H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 29.4 bits (67), Expect = 0.14
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
H + HTGEKP +
Sbjct: 30 MHQKIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.54
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+G K + C C S+++ H KI
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI 34
Score = 27.5 bits (62), Expect = 0.64
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
+ C + ++ H + HT +KP
Sbjct: 12 HFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H + H+GEKP
Sbjct: 30 MHQKIHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TG KP++CN C + F+Q L H R+ HT
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HT 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T KPY+C C FS+ L RH
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 30.6 bits (70), Expect = 0.058
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 93 RHIRRHTGEKPFKCN 107
RH R HTGEKP +
Sbjct: 30 RHQRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.14
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C Q + RH R HT +KP
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.86
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 4 HLRKHSGEKPYTCYFC 19
+G KPY C C
Sbjct: 3 SGSSGTGGKPYQCNEC 18
Score = 26.7 bits (60), Expect = 1.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 RHLRKHSGEKPYTC 16
RH R H+GEKP
Sbjct: 30 RHQRVHTGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 4e-07
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+ C C + FT +L H +I HT
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HT 36
Score = 36.0 bits (84), Expect = 7e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY C C F+ R NL +H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 30.2 bits (69), Expect = 0.087
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
+H + HT +KP +
Sbjct: 30 KHQKIHTKQKPSGPS 44
Score = 29.8 bits (68), Expect = 0.11
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y+C C ++ +H + HTK KP
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 28.2 bits (64), Expect = 0.32
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C S++ H KI
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI 34
Score = 26.7 bits (60), Expect = 1.1
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
+H + H+ +KP
Sbjct: 30 KHQKIHTKQKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 4e-07
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP+KC C + F + L H + H+
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HS 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPY+C C F +L +H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 30.6 bits (70), Expect = 0.051
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
+H H+GE+P +
Sbjct: 30 QHHSVHSGERPSGPS 44
Score = 29.4 bits (67), Expect = 0.13
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C VC R + + +H H+ ++P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 28.2 bits (64), Expect = 0.31
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKPY C C
Sbjct: 2 SSGSSGTGEKPYKCQVC 18
Score = 27.1 bits (61), Expect = 0.91
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
+H HSGE+P
Sbjct: 30 QHHSVHSGERPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 5e-07
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGE P++C+ C + F++ L +H R H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRT-HA 36
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T + PYEC C FSR+ L H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 30.6 bits (70), Expect = 0.049
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
R + H R H GEKP +
Sbjct: 24 RKYQLISHQRTHAGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.46
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GE PY C+ C
Sbjct: 2 SSGSSGTGENPYECHEC 18
Score = 27.9 bits (63), Expect = 0.52
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C + + H R H +KP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 30 SHQRTHAGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.5 bits (106), Expect = 6e-07
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP++C+ C + F + L H RI HT
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HT 36
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KPYEC C F ++ L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 27.9 bits (63), Expect = 0.50
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GEKPY C C S ++ H +I
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI 34
Score = 27.9 bits (63), Expect = 0.56
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C + + H R HT + P
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 27.5 bits (62), Expect = 0.64
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
+ + H R HTGE P +
Sbjct: 24 KKSQLHVHQRIHTGENPSGPS 44
Score = 26.3 bits (59), Expect = 1.9
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GE P
Sbjct: 30 VHQRIHTGENPSGP 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 45.1 bits (106), Expect = 6e-07
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+Y+C C ++ +K+H+R HT +PY C +C+ F + NL +H+K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 40.5 bits (94), Expect = 2e-05
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
+ C C + +++HIR HT +P+ C +C F +L H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 36.2 bits (83), Expect = 8e-04
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
+++H+R H+ +PY C +CNF ++ H+K K K
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 26.6 bits (58), Expect = 2.1
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEK 102
+ C C++ ++ +H++ K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 9e-07
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+G+KP++C C + F Q L H R+ HT
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ KPYEC C F + +L +H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 29.4 bits (67), Expect = 0.14
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 93 RHIRRHTGEKPFKCN 107
+H R HTGE+ +
Sbjct: 30 QHKRVHTGERSSGPS 44
Score = 29.0 bits (66), Expect = 0.17
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C Q + +H R HT ++
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 27.1 bits (61), Expect = 0.93
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 3 RHLRKHSGEKPYTCYFC 19
SG+KPY C C
Sbjct: 2 SSGSSGSGKKPYECKEC 18
Score = 27.1 bits (61), Expect = 1.0
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
+H R H+GE+
Sbjct: 30 QHKRVHTGERSSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 9e-07
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGEKP KC C + F L H R H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HV 36
Score = 34.1 bits (79), Expect = 0.003
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T +KP +C C F + L H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 29.1 bits (66), Expect = 0.16
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 93 RHIRRHTGEKPFKCN 107
H R H +K +
Sbjct: 30 MHQRTHVDDKHSGPS 44
Score = 29.1 bits (66), Expect = 0.21
Identities = 7/31 (22%), Positives = 8/31 (25%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
C C + H R H DK
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 27.1 bits (61), Expect = 0.85
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 3 RHLRKHSGEKPYTC 16
H R H +K
Sbjct: 30 MHQRTHVDDKHSGP 43
Score = 26.8 bits (60), Expect = 1.5
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GEKP C C
Sbjct: 2 SSGSSGTGEKPCKCTEC 18
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 43.8 bits (104), Expect = 1e-06
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
GE P+ C C + FTQ SL H R ++
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQ 36
Score = 31.5 bits (72), Expect = 0.023
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ PY CG C F++R +L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 26.5 bits (59), Expect = 1.6
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 4 HLRKHSGEKPYTCYFC 19
GE PY C C
Sbjct: 2 SSGSSGGETPYLCGQC 17
Score = 25.7 bits (57), Expect = 2.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPY 204
Y+C C Q S+ H R ++ P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 24.5 bits (54), Expect = 6.6
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 4 HLRKHSGEKPYT 15
H R S P +
Sbjct: 30 HQRSCSQSGPSS 41
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGE+ ++C+ C + F Q +L H RI H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI-HR 36
Score = 34.8 bits (81), Expect = 0.001
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T ++ YEC C F ++ L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 29.4 bits (67), Expect = 0.15
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 93 RHIRRHTGEKPFKCN 107
H R H GEKP +
Sbjct: 30 MHQRIHRGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.26
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
Y C Q ++ H R H +KP
Sbjct: 12 HYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.71
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GE+ Y C C S+++ H +I
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI 34
Score = 26.7 bits (60), Expect = 1.3
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
H R H GEKP
Sbjct: 30 MHQRIHRGEKPSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 44.1 bits (105), Expect = 1e-06
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+ KP+ C C + F++ L HI+ HT
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT 37
Score = 39.9 bits (94), Expect = 3e-05
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRR-HTGEKPFKCNFCFQCFTQ 115
+ C C R + HI++ HT E+P KC +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 36.4 bits (85), Expect = 6e-04
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
+ KPY C C FSR D+L H+K H+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT 37
Score = 34.5 bits (80), Expect = 0.002
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 176 YVCMVCPYHCRQNESMKRHLRK-HTKDKPYECGFCSLKFS 214
Y+C C + + + H+++ HT ++P++C S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 28.7 bits (65), Expect = 0.29
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKH 37
S KPY C C + +N H+K H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 28.3 bits (64), Expect = 0.36
Identities = 5/20 (25%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 1 MRRHLRK-HSGEKPYTCYFC 19
+ H+++ H+ E+P+ C
Sbjct: 28 LNGHIKQVHTSERPHKCQVW 47
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
GEKP++C+ C + F+ + L H HT
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HT 36
Score = 34.1 bits (79), Expect = 0.003
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+KPY+C C FS L +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 29.8 bits (68), Expect = 0.099
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 93 RHIRRHTGEKPFKCN 107
+H HT EKP +
Sbjct: 30 QHWITHTREKPSGPS 44
Score = 29.0 bits (66), Expect = 0.21
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C C + + +H HT++KP
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 27.5 bits (62), Expect = 0.77
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
GEKPY C C + + H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT 34
Score = 27.1 bits (61), Expect = 1.1
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
+H H+ EKP
Sbjct: 30 QHWITHTREKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 1e-06
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGE+ ++C+ C + F + +L H RI HT
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRI-HT 36
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T ++ YEC C F+R+ L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 29.4 bits (67), Expect = 0.13
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
R + H R HTGEKP +
Sbjct: 24 RKSTLIMHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.28
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 3 RHLRKHSGEKPYTCYFC 19
+GE+ Y C C
Sbjct: 2 SSGSSGTGERHYECSEC 18
Score = 27.1 bits (61), Expect = 0.82
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
Y C + ++ H R HT +KP
Sbjct: 12 HYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.8
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GEKP
Sbjct: 30 MHQRIHTGEKPSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.0 bits (102), Expect = 2e-06
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
T K + CN C + FT+ L H +I HTR
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HTR 37
Score = 34.5 bits (80), Expect = 0.002
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T K Y C C F+R +L RH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 26.4 bits (59), Expect = 1.9
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 4 HLRKHSGEKPYTCYFC 19
+ K Y C C
Sbjct: 3 SGSSGTDSKSYNCNEC 18
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 43.5 bits (103), Expect = 3e-06
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRI 125
+S ++ H R HTGEKPF C++ C + F ++ L H R
Sbjct: 31 KSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 43.1 bits (102), Expect = 3e-06
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 192 KRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHLK 224
K H R HT +KP+ C + C +F+R D L RH +
Sbjct: 36 KAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 31.2 bits (71), Expect = 0.054
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 2 RRHLRKHSGEKPYTCYF 18
+ H R H+GEKP++C +
Sbjct: 36 KAHTRTHTGEKPFSCSW 52
Score = 29.7 bits (67), Expect = 0.19
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 92 RRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
+ + C+ C + + ++ L+ H R HT
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HT 43
Score = 28.9 bits (65), Expect = 0.41
Identities = 4/34 (11%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 192 KRHLRKHTKDKPYECGF--CSLKFSRRDNLRRHL 223
++ + + C C + + +L+ H
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHT 39
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 42.6 bits (101), Expect = 3e-06
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 96 RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+G++ ++C C + F Q SL H RI HT
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERI-HT 34
Score = 32.2 bits (74), Expect = 0.015
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ + YEC C F ++ +L H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 26.0 bits (58), Expect = 2.2
Identities = 10/30 (33%), Positives = 11/30 (36%), Gaps = 7/30 (23%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPY 204
Y C RQ S+ H R HT P
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 25.2 bits (56), Expect = 4.2
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 3 RHLRKHSGEKPYT 15
H R H+G P +
Sbjct: 28 LHERIHTGSGPSS 40
Score = 24.1 bits (53), Expect = 9.5
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 6 RKHSGEKPYTCYFC 19
SG++ Y C C
Sbjct: 3 SGSSGQRVYECQEC 16
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 98 HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKPF C+ C + F+ L H + H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQT-HA 34
Score = 31.0 bits (71), Expect = 0.036
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 198 HTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KP+ C C FS + L H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 30.2 bits (69), Expect = 0.064
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 94 HIRRHTGEKPFKCN 107
H + H EKP +
Sbjct: 29 HQQTHAEEKPSGPS 42
Score = 27.9 bits (63), Expect = 0.49
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 4 HLRKHSGEKPYTC 16
H + H+ EKP
Sbjct: 29 HQQTHAEEKPSGP 41
Score = 27.1 bits (61), Expect = 0.84
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
P+ C + H + H ++KP
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 25.6 bits (57), Expect = 2.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 8 HSGEKPYTCYFC 19
SGEKP+ C C
Sbjct: 5 SSGEKPFGCSCC 16
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 7e-06
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
+GE+P+ CN C + F ++ L H++ H R
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFR 37
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ ++PY C C F R +L HLK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 30.9 bits (71), Expect = 0.040
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 87 RSIDMRRHIRRHTGEKPFKCN 107
R + H++RH EK +
Sbjct: 24 RHSHLIEHLKRHFREKSSGPS 44
Score = 28.6 bits (65), Expect = 0.23
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
HL++H EK
Sbjct: 30 EHLKRHFREKSSGP 43
Score = 28.3 bits (64), Expect = 0.42
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYEC 206
PY C ++ + HL++H ++K
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 27.5 bits (62), Expect = 0.59
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
SGE+PY C C S + HLK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR 34
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.3 bits (98), Expect = 8e-06
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
TGE P++C C + F++ L +H + H+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT-HS 36
Score = 35.6 bits (83), Expect = 8e-04
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
T + PYEC C FSR+D L H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 28.2 bits (64), Expect = 0.30
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYECG 207
PY C + + + H + H+ G
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
Score = 27.1 bits (61), Expect = 0.88
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 87 RSIDMRRHIRRHTGEKPFKC 106
R + H + H+G+
Sbjct: 24 RKDQLVSHQKTHSGQSGPSS 43
Score = 25.9 bits (58), Expect = 2.7
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 4 HLRKHSGEKPYTCYFC 19
+GE PY C C
Sbjct: 3 SGSSGTGENPYECCEC 18
Score = 25.5 bits (57), Expect = 3.0
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
H + HSG+ +
Sbjct: 30 SHQKTHSGQSGPSS 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEK C+ C + F +L+ H R+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HM 36
Score = 31.8 bits (73), Expect = 0.022
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ +K + C C F LR H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 28.3 bits (64), Expect = 0.35
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
SGEK +TC C ++S++ H ++
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV 34
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 40.8 bits (96), Expect = 1e-05
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
R T KP++C C FSR D+L H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 40.8 bits (96), Expect = 1e-05
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIR 124
R TG KPF+C C + F+++ L H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 29.2 bits (66), Expect = 0.15
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLK 34
R +G KP+ C C+ + + H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 40.6 bits (96), Expect = 1e-05
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 96 RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GE P++C+ C + F + L +H R H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRT-HA 34
Score = 32.9 bits (76), Expect = 0.007
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRH 222
+ + PYEC C F+R+D L H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
Score = 30.2 bits (69), Expect = 0.069
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 182 PYHC-------RQNESMKRHLRKHTKDKPYECG 207
PY C + + + H R H + G
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 27.9 bits (63), Expect = 0.39
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 87 RSIDMRRHIRRHTGEKPFKC 106
R + H R H GE
Sbjct: 22 RKDQLISHQRTHAGESGPSS 41
Score = 27.1 bits (61), Expect = 0.74
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 3 RHLRKHSGEKPYTC 16
H R H+GE +
Sbjct: 28 SHQRTHAGESGPSS 41
Score = 24.8 bits (55), Expect = 6.7
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 6 RKHSGEKPYTCYFC 19
SGE PY C C
Sbjct: 3 SGSSGENPYECSEC 16
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 41.8 bits (99), Expect = 1e-05
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 81 CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH 127
CD ++RH + H G K + C H+ H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 41.1 bits (97), Expect = 2e-05
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
+ ++ H HT + P++C C + F+ L+ H ++ H
Sbjct: 15 KHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HA 57
Score = 39.9 bits (94), Expect = 6e-05
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 9/55 (16%)
Query: 182 PYHCRQNE---------SMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
PY C +KRH + H + CS +H+ + H
Sbjct: 31 PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 39.5 bits (93), Expect = 8e-05
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 186 RQNESMKRHLRKHTKDKPYECGF--CSLKFSRRDNLRRH 222
+++ +K H HT+ PYEC C +FS L+RH
Sbjct: 14 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
Score = 33.4 bits (77), Expect = 0.012
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKH 37
+RH + H+G C+F + H+ H
Sbjct: 50 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 28.7 bits (65), Expect = 0.56
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 2 RRHLRKHSGEKPYTCYF--CNFKSAHMSSINNHLKI 35
+ H H+ + PY C C+ + + S + H K+
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 40.2 bits (94), Expect = 2e-05
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
GE PFKC+ C + FTQ L H R H R
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT-HAR 37
Score = 31.8 bits (72), Expect = 0.024
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ P++C C F++R+ L +H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 26.7 bits (59), Expect = 1.4
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
+GE P+ C C+ + + H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 39.2 bits (92), Expect = 4e-05
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+GEKP+ C C + F+ N L H ++ HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKM-HT 34
Score = 31.5 bits (72), Expect = 0.023
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 198 HTKDKPYECGFCSLKFSRRDNLRRH 222
+ +KPY C C FS + L +H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH 29
Score = 26.9 bits (60), Expect = 0.98
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 8 HSGEKPYTCYFCNFKSAHMSSINNHLKI 35
SGEKPY+C C + + + H K+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKM 32
Score = 24.6 bits (54), Expect = 6.1
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDKPYECG 207
Y C C N + +H + HT G
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSSG 42
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 39.9 bits (92), Expect = 1e-04
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 174 YRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
++VC +C + S+K+H+R C C +F+ D+ H+ +H+
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 37.2 bits (85), Expect = 0.001
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
F C +C S+ +++HIR E C C + FT S H+ KH
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 27.2 bits (59), Expect = 3.7
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 79 LVCDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH 127
L+ + + F C C F+ +VSL+ HIR
Sbjct: 50 LIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE 98
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 38.0 bits (88), Expect = 3e-04
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 25/99 (25%)
Query: 8 HSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYV 67
+ C+ + M + H+ ++H+ + + C +
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV----------------CYW- 62
Query: 68 PRPNIQFNFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKC 106
C + HIR HTGEK
Sbjct: 63 --------EECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 36.5 bits (84), Expect = 0.001
Identities = 15/109 (13%), Positives = 25/109 (22%), Gaps = 35/109 (32%)
Query: 98 HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKIL 157
+ C + F+ L TH+ ++H E C
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHV-----GGPEQNNHVC-------------- 60
Query: 158 LQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYEC 206
Y C + + H+R HT +K
Sbjct: 61 ----------------YWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 31.1 bits (70), Expect = 0.12
Identities = 6/30 (20%), Positives = 8/30 (26%)
Query: 198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
C FS L H+ +H
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 30.3 bits (68), Expect = 0.23
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 73 QFNFTCLVCDYHSPRSIDMRRHIRR-HTGEKPFKCNFCF--------QCFTQNVSLQTHI 123
Q + CD ++ H+ H G + C+ + F L HI
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 124 RIKHT 128
R+ HT
Sbjct: 83 RV-HT 86
Score = 29.6 bits (66), Expect = 0.33
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 1 MRRHLRKHSGEKPYTC 16
+ H+R H+GEK
Sbjct: 78 LVNHIRVHTGEKSGPS 93
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 36.0 bits (83), Expect = 6e-04
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLKDQHS 228
K Y CG C+ F+RRD L RH + HS
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 25.2 bits (55), Expect = 3.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKH 127
K + C C + FT+ L H + H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 35.7 bits (82), Expect = 8e-04
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCS 210
+ C +C R + RH H+ +KPY G S
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 34.1 bits (78), Expect = 0.003
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 75 NFTCLVCDYHSPRSIDMRRHIRRHTGEKPFKCNFC 109
C +C + RH H+GEKP+
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.5 bits (66), Expect = 0.17
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 1 MRRHLRKHSGEKPYTCYFCN 20
+ RH HSGEKPY+ +
Sbjct: 28 LNRHKLSHSGEKPYSSGPSS 47
Score = 27.6 bits (61), Expect = 0.79
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRH 222
K C C F +L RH
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRH 31
Score = 26.8 bits (59), Expect = 1.3
Identities = 7/33 (21%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 96 RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
K C C + F L H H+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS-HS 36
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 36.3 bits (83), Expect = 0.002
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 31/107 (28%)
Query: 2 RRHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHA 61
+ + E Y C +C F++ ++ H+ +H
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH------------------------ 42
Query: 62 KRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRR-HTGEKPFKCN 107
P + ++ C+ C++ + R + H + H GE+ FK
Sbjct: 43 ------PNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLT 83
Score = 35.5 bits (81), Expect = 0.004
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 175 RYVCMVCPYHCRQNESMKRHLR-KHT---KDKPYECGFCSLKFSRRDNLRRHLKDQH-SY 229
Y C C + H+ +H + Y C C+ R D L H H
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE 77
Query: 230 DSFRSSTKKPGKYGVL 245
++F+ + K +
Sbjct: 78 ENFKLTMVKRNNQTIF 93
Score = 28.2 bits (62), Expect = 1.4
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 58 VQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIR-RHTG---EKPFKCNFCFQCF 113
+ H ++ + C C + +P H+ H + C C
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 114 TQNVSLQTHIRIKHT 128
+ +L H H
Sbjct: 61 KRYDALSEHNLKYHP 75
Score = 26.7 bits (58), Expect = 3.9
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 189 ESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
+ + + YEC +C+ + + H+ +H
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHP 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 34.6 bits (79), Expect = 0.004
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 87 RSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTH 122
S + + H G++ KC+ C F + +L
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 32.3 bits (73), Expect = 0.029
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 190 SMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
S + + H D+ +C C + F RR L R
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 27.7 bits (61), Expect = 1.2
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIK 126
+ K C C + Q +L +
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 27.3 bits (60), Expect = 1.7
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 1 MRRHLRKHSGEKPYTCYFCNFKSAHMSSINNH 32
+ + H G++ C C S+++
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 26.2 bits (57), Expect = 3.5
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 182 PYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRH 222
C + + ++ K C C + L +
Sbjct: 18 SQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 32.2 bits (72), Expect = 0.015
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
+ +KPY C C L+F R+D + H++
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 29.1 bits (64), Expect = 0.17
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 98 HTGEKPFKCNFCFQCFTQNVSLQTHIRIKH 127
+GEKP+ C C F + + H+R
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.020
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 15/41 (36%)
Query: 39 EKIQCRYSILKLQSHEESLVQHAKRCSYVP--RPNIQFNFT 77
EK Q ++ KLQ+ SL K Y P + T
Sbjct: 18 EK-Q---ALKKLQA---SL----KL--YADDSAPALAIKAT 45
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.6 bits (68), Expect = 0.047
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEK 102
+ C C Y S ++ H+R+HTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.5 bits (60), Expect = 0.66
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 12 KPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
KPY C C++ SA +++N HL+ EK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.3 bits (57), Expect = 1.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDK 202
Y C C Y ++ HLRKHT +K
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 24.0 bits (51), Expect = 10.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 199 TKDKPYECGFCSLKFSRRDNLRRHLK 224
+ KPY+C CS + + NL HL+
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLR 30
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.071
Identities = 34/221 (15%), Positives = 60/221 (27%), Gaps = 83/221 (37%)
Query: 119 LQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYN------------DLKIL---LQHTKN 163
+Q ++ ++ L ++ + L N L L L+ K
Sbjct: 349 VQDYVNKTNSHL-----PAGKQVEIS-----LVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 164 CKGA------FRE---NDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLK-- 212
G F E S R++ + P+H + K ++
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 213 -FSRRD--NLRRH-------LKDQ-----------------HSYDSFRSSTKKPGKY--- 242
+ D +LR + D H D F PG
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD-F-----GPGGASGL 512
Query: 243 GVL---IVKGSNISTMRVTSPSSQELTDDHSEDIEEYHVKH 280
GVL G+ + RV + ++ D ++Y K
Sbjct: 513 GVLTHRNKDGTGV---RVIVAGTLDINPD-----DDYGFKQ 545
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 33.7 bits (76), Expect = 0.076
Identities = 7/73 (9%), Positives = 20/73 (27%)
Query: 159 QHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDN 218
+ +G + + ++ + + Y+C CS +
Sbjct: 136 SGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLD 195
Query: 219 LRRHLKDQHSYDS 231
L H+ + +
Sbjct: 196 LDAHVASHGLHGN 208
Score = 31.0 bits (69), Expect = 0.56
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+ ++C+ C + L H+
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.14
Identities = 25/216 (11%), Positives = 59/216 (27%), Gaps = 54/216 (25%)
Query: 130 LFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNE 189
+F T + D + +D+ +++ ++
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-----IP----- 429
Query: 190 SMKRHLRKHTKDKP---------YE--CGFCSLKFS--RRDN-----LRRHLKD---QHS 228
S+ L+ +++ Y F S D + HLK+
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 229 YDSFRS--------STKKPGKYGVLIVKGSNISTMRVTSPSSQELTDDHSE------DIE 274
FR K GS ++T++ + D+ + I
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 275 EYHVKHDDTSIQHEETCV-----QYE----YDDDER 301
++ K ++ I + T + E +++ +
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 32.5 bits (73), Expect = 0.19
Identities = 44/274 (16%), Positives = 86/274 (31%), Gaps = 77/274 (28%)
Query: 39 EKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDMRRHIRRH 98
E ++ Y L E Y+ + + +N + Y+ R + +R+
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQA 143
Query: 99 TGE-KPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQ-------ESTRIYCTF----- 145
E +P +NV + + G K S ++ C
Sbjct: 144 LLELRP----------AKNVLIDG--------VLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 146 ------CRDPLYNDLKIL--LQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRK 197
C P L++L L + + R + S S++ LR+
Sbjct: 186 WLNLKNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNI-----KLRI---HSIQAELRR 236
Query: 198 HTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLIVKGSNISTMRV 257
K KPYE L ++++ ++++F S K +L+ T R
Sbjct: 237 LLKSKPYENCLLVL---------LNVQNAKAWNAFNLSCK------ILL-------TTR- 273
Query: 258 TSPSSQELTDDHSEDIE-EYHVKHDDTSIQHEET 290
+++TD S + H ++ +E
Sbjct: 274 ----FKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Score = 29.1 bits (64), Expect = 2.2
Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 32/121 (26%)
Query: 17 YFCNFKSAHMSSINNHLKIKHLEKIQCRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNF 76
YF + H+ +I + ++ + + L+ K N +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-----------QKIRHDSTAWNASGSI 520
Query: 77 TCLVCD---YHSPRSIDMRRHIRRHTGEKPFKCN----FCFQCFTQNVSLQTHIRIKHTR 129
+ Y + +I + + N F + +N+ I K+T
Sbjct: 521 LNTLQQLKFY--------KPYICDNDPKYERLVNAILDFLPKI-EENL-----ICSKYTD 566
Query: 130 L 130
L
Sbjct: 567 L 567
Score = 29.1 bits (64), Expect = 2.5
Identities = 28/210 (13%), Positives = 65/210 (30%), Gaps = 47/210 (22%)
Query: 43 CRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDYHSPRSIDM-RRHIRRHTGE 101
+YS+++ Q E ++ +I + R + +
Sbjct: 412 HKYSLVEKQPKESTISIP----------SIYLELKV-----KLENEYALHRSIVDHYNIP 456
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIYCTFCRDPLYNDLKIL---L 158
K F + + HI H + ++ + F ++ D + L +
Sbjct: 457 KTFDSDDLIPPYLDQYFYS-HI-GHHLKNIEHPERMT-----LFRM--VFLDFRFLEQKI 507
Query: 159 QHTK---NCKGA----FRENDSYR-YVCMVCPYHCRQNESMKRHLRKHTKDKPYECGFCS 210
+H N G+ ++ Y+ Y+C P + R ++ L K ++ +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-ICSKYTD 566
Query: 211 LKFSRRDNLRRHLKDQHSY---DSFRSSTK 237
L LR L + ++ + +
Sbjct: 567 L-------LRIALMAEDEAIFEEAHKQVQR 589
Score = 27.1 bits (59), Expect = 9.3
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 129 RLFGQDKQESTRIYCTFCRDPLYNDLKILLQHTKN-CKGAFRENDSYRY--------VCM 179
RLF + + F + L + K L+ K + Y +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 180 VCPYH-CRQNESMKRHLRKH-TKDKP 203
Y+ R LR+ + +P
Sbjct: 126 FAKYNVSR--LQPYLKLRQALLELRP 149
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 28.4 bits (64), Expect = 0.24
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEK 102
F C VC R ++RH R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.1 bits (63), Expect = 0.27
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLK 224
+ + C C+ F+R+++L+RH +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
Score = 27.3 bits (61), Expect = 0.59
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDK 202
+VC VC + E +KRH R HT +K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 24.2 bits (53), Expect = 6.5
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
+ F C C + F + L+ H R HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HTN 27
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 28.3 bits (64), Expect = 0.24
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 202 KPYECGF--CSLKFSRRDNLRRHLK 224
+P+ C + C +F+R D L+RH +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKR 25
Score = 26.8 bits (60), Expect = 0.87
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 87 RSIDMRRHIRRHTGEK 102
RS +++RH R HTGEK
Sbjct: 16 RSDELQRHKRTHTGEK 31
Score = 24.9 bits (55), Expect = 5.0
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 102 KPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
+PF C + C + FT++ LQ H R HT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT-HT 28
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (62), Expect = 0.36
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 98 HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
EK FKCN C + F+ + L H RI HTR
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERI-HTR 37
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.8 bits (61), Expect = 0.50
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 98 HTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
+G++PF C C FT + H+++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
Score = 27.4 bits (60), Expect = 0.57
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 198 HTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ +P+ C C F+ + N RHLK
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 25.9 bits (56), Expect = 2.5
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 8 HSGEKPYTCYFCNFKSAHMSSINNHLKI 35
SG++P+ C C ++ HLK+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 27.5 bits (60), Expect = 0.51
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 12 KPYTCYFCNFKSAHMSSINNHLKIKH 37
K Y C +C F+SA S++ H+K KH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
Score = 25.6 bits (55), Expect = 2.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLKDQHSYD 230
K Y+C +C + + NL+ H+K +HS +
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 0.66
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDK 202
+ C +C Y R ++K H+ +H+ +K
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 24.8 bits (53), Expect = 5.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEK 102
F C +C+Y + +++ H+ RH+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.8 bits (63), Expect = 0.76
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 76 FTCLVCDYHSPRSID-MRRHIRR-HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
C C+ + +++ +++H+ + KC C + F L H +H+
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 27.6 bits (60), Expect = 2.2
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 175 RYVCMVCPYHCRQN-ESMKRHLRK-HTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSF 232
VC C R+ +K+H+ +C C +F + L H +HS
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
Query: 233 RSSTKKPGKYG 243
+ + G+ G
Sbjct: 84 DAEASEGGESG 94
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH,
isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces
cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A*
1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
Length = 533
Score = 30.6 bits (68), Expect = 0.77
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 212 KFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLIV--KGSNISTM 255
++ + R + F+ KKP K G++++ G+N ST+
Sbjct: 36 VVTKTASGRFDVTPTVQDYVFKLDLKKPEKLGIMLIGLGGNNGSTL 81
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 28.7 bits (63), Expect = 0.79
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 180 VCPYHCRQ--NESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDS 231
VCPY + + +K+ + K C C F ++ RH + H+ ++
Sbjct: 44 VCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNN 97
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.5 bits (61), Expect = 0.81
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 201 DKPYECGF--CSLKFSRRDNLRRHL 223
DK +EC F C+ F RR N+R H+
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHI 40
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.8 bits (66), Expect = 1.1
Identities = 8/38 (21%), Positives = 11/38 (28%)
Query: 92 RRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
H GEK + Q L+ I + R
Sbjct: 197 TIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
Score = 26.7 bits (58), Expect = 9.7
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 192 KRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
H +K + ++LR +
Sbjct: 197 TIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 25.9 bits (56), Expect = 2.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLK 224
KPY C C +F+ L+RH++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVR 24
Score = 24.7 bits (53), Expect = 5.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRI 125
KP+ C C + F +LQ H+RI
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRI 25
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 27.6 bits (61), Expect = 2.3
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 10 GEKPYTCYFCNFKSAHMSSINNHLKIKH 37
G + C FC+ A +H K++H
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEH 39
Score = 26.5 bits (58), Expect = 5.8
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 201 DKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVLIVKGSNISTMRVTSP 260
+ C FC F+ + H K +H ++ S K G +K N ++ +
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEHQFN-IDSMVHKHGLEFYGYIKLINFIRLKNPTV 71
Query: 261 SSQELTDDHSE-DIEEY 276
+ + +EY
Sbjct: 72 EYMNSIYNPVPWEKDEY 88
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.1 bits (59), Expect = 2.4
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 175 RYVCMVCPYHCRQN-ESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
C C R+ E +K+H+ ++ + C C + ++ H+ H+
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENCKQE-MFTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 27.1 bits (59), Expect = 2.8
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 76 FTCLVCDYHSPRSID-MRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRL 130
+C C ++I+ +++H+ ++ F C+ C + ++ H+ H L
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.4 bits (55), Expect = 3.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 201 DKPYECGF--CSLKFSRRDNLRRHLK 224
D+PY C C F R +L RH K
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKK 26
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 28.6 bits (63), Expect = 3.6
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 199 TKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDS 231
Y C C+ +FS L HL+ H D+
Sbjct: 112 VNPSSYVCNVCNARFSTMSALSEHLRSDHRDDA 144
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 27.8 bits (61), Expect = 3.8
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 84 HSPRSI-DMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDKQESTRIY 142
R+I +M ++IR + CN C Q S +T H + Q +
Sbjct: 160 LHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPR 219
Query: 143 CTFCRDPLYNDL 154
C C D +++
Sbjct: 220 CPHCNDYWPHEI 231
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 26.0 bits (57), Expect = 4.1
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 176 YVCMVCPYHCRQN---ESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ + CP C + HL+ + +C FC FS H
Sbjct: 14 FNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEA-YESHEG 64
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.1 bits (54), Expect = 5.6
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 200 KDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKP 239
+DKPY C C ++ R L H H + +
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDS 43
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 24.9 bits (53), Expect = 7.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 197 KHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
+ ++P C C + NLRRHL+ +H
Sbjct: 18 RSQSEQPATCPICYAVIRQSRNLRRHLELRH 48
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 27.3 bits (61), Expect = 7.8
Identities = 11/65 (16%), Positives = 19/65 (29%)
Query: 186 RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKYGVL 245
Q ++ LRK + F RR+ L L + G
Sbjct: 368 AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY 427
Query: 246 IVKGS 250
++ G+
Sbjct: 428 LMIGA 432
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 27.1 bits (59), Expect = 8.7
Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 8/59 (13%)
Query: 141 IYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHT 199
YC C ++N L + ++ Y C C L ++
Sbjct: 434 YYCNECDVEVFNILFVTSENGSRNT--------YLVHCEGCARRRSAGLQGVVVLEQYR 484
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 24.0 bits (51), Expect = 9.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 78 CLVCDYHSPRSIDMRRHIRRHTGEK 102
C++C ++ + H+R+HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.429
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,416,671
Number of extensions: 240117
Number of successful extensions: 2059
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1891
Number of HSP's successfully gapped: 1002
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.4 bits)