RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4409
(305 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 45.4 bits (108), Expect = 1e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 96 RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHTR 129
R H+GEKP++C C FTQ+ +++ HI KHT
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE 34
Score = 37.3 bits (87), Expect = 6e-05
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
R H+ +KPYEC C +F++ ++ H+ +H+
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 33
Score = 34.2 bits (79), Expect = 8e-04
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEKI 41
R HSGEKPY CY C+ + ++ H+ KH E +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36
Score = 24.2 bits (53), Expect = 3.4
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEK 102
+ C +C +S M+ HI + E
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
Score = 23.8 bits (52), Expect = 4.3
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 176 YVCMVCPYHCRQNESMKRH-LRKHTKD 201
Y C +C Q+ +MK H L+KHT++
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 43.2 bits (102), Expect = 5e-07
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 93 RHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
R + + +KC+ C + F+ + L H R HT
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HT 36
Score = 37.8 bits (88), Expect = 5e-05
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 193 RHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
R + + + Y+C C FS +L +H +
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33
Score = 35.1 bits (81), Expect = 5e-04
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 3 RHLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
R + + Y C C +H S ++ H +
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 34
Score = 24.0 bits (52), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGE 101
+ C C S D+ +H R HTGE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 24.0 bits (52), Expect = 4.5
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHT 199
Y C C + + +H R HT
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHT 36
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 42.8 bits (101), Expect = 8e-07
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 94 HIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
R TG KPF+C C + F+++ L H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 37.4 bits (87), Expect = 7e-05
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 194 HLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
R T KP++C C FSR D+L H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 33.2 bits (76), Expect = 0.002
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 4 HLRKHSGEKPYTCYFCNFKSAHMSSINNHLKI 35
R +G KP+ C C+ + + H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 41.8 bits (99), Expect = 1e-06
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 98 HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
H+GEKP+ C C + F+++ L H R+ HT
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRV-HT 31
Score = 35.7 bits (83), Expect = 2e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 198 HTKDKPYECGFCSLKFSRRDNLRRHLK 224
H+ +KPY C C FSR L +H +
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQR 28
Score = 30.7 bits (70), Expect = 0.015
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 8 HSGEKPYTCYFCNFKSAHMSSINNHLKI 35
HSGEKPY C C + S + H ++
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRV 29
Score = 26.8 bits (60), Expect = 0.28
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGE 101
+ C+ C RS + +H R HTGE
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 25.7 bits (57), Expect = 0.78
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHT 199
Y C+ C ++ + +H R HT
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHT 31
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 41.6 bits (98), Expect = 2e-06
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 96 RRHTGEKPFKCNFCFQCFTQNVSLQTHIRIKH 127
R HTGEKP+ C+ C + F Q L H + H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 35.0 bits (81), Expect = 4e-04
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 196 RKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
R HT +KPY C C F ++ L H K H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 33.1 bits (76), Expect = 0.002
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 6 RKHSGEKPYTCYFCNFKSAHMSSINNHLKIKHLEK 40
R H+GEKPY C C+ ++ H K H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 24.2 bits (53), Expect = 2.8
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHT 199
Y C C RQ + + H +++
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYH 32
Score = 23.5 bits (51), Expect = 5.3
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEK 102
+ C CD + + H +R+
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 38.2 bits (89), Expect = 3e-05
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 98 HTGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+G++PF C C FT + H+++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV-HT 31
Score = 31.3 bits (71), Expect = 0.008
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 198 HTKDKPYECGFCSLKFSRRDNLRRHLK 224
+ +P+ C C F+ + N RHLK
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 25.5 bits (56), Expect = 0.89
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 8 HSGEKPYTCYFCNFKSAHMSSINNHLKI 35
SG++P+ C C ++ HLK+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
Score = 23.9 bits (52), Expect = 3.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHT 199
+VC +C + RHL+ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHT 31
Score = 22.8 bits (49), Expect = 8.7
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGE 101
F C +C + RH++ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTDT 33
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 36.5 bits (85), Expect = 1e-04
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRR-HTGEKPFKCN 107
+ C C R + HI++ HT E+P KC
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 36.1 bits (84), Expect = 2e-04
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 99 TGEKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+ KP+ C C + F++ L HI+ HT
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 34.2 bits (79), Expect = 0.001
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 199 TKDKPYECGFCSLKFSRRDNLRRHLKDQHS 228
+ KPY C C FSR D+L H+K H+
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 33.4 bits (77), Expect = 0.001
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 176 YVCMVCPYHCRQNESMKRHLRK-HTKDKPYEC 206
Y+C C + + + H+++ HT ++P++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 26.9 bits (60), Expect = 0.38
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 9 SGEKPYTCYFCNFKSAHMSSINNHLKIKH 37
S KPY C C + +N H+K H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 25.0 bits (55), Expect = 1.7
Identities = 5/17 (29%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 1 MRRHLRK-HSGEKPYTC 16
+ H+++ H+ E+P+ C
Sbjct: 21 LNGHIKQVHTSERPHKC 37
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 35.1 bits (81), Expect = 4e-04
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 75 NFTC--LVCDYHSPRSIDMRRHIRRHTGEKPFKCNF 108
+F+C C ++ H++ H+ + + C F
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 32.0 bits (73), Expect = 0.005
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 173 SYRYVCMVCPYHCRQNESMKRHLRKHTKDKPYECGF 208
S+ C + +K H++ H+ + Y C F
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 27.4 bits (61), Expect = 0.19
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1 MRRHLRKHSGEKPYTCYF 18
++ H++ HS + Y C F
Sbjct: 19 LKEHMKLHSDTRDYICEF 36
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 34.5 bits (80), Expect = 5e-04
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+KPF+C C + F+++ L THIR HT
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRT-HT 27
Score = 29.9 bits (68), Expect = 0.027
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLK 224
KP++C C FSR D+L H++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR 24
Score = 24.1 bits (53), Expect = 2.5
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHT 199
+ C +C + +++ + H+R HT
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHT 27
Score = 23.3 bits (51), Expect = 4.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTG 100
F C +C + RS + HIR HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 23.0 bits (50), Expect = 7.5
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 11 EKPYTCYFCNFKSAHMSSINNHLKI 35
+KP+ C C + + H++
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRT 25
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 34.4 bits (79), Expect = 7e-04
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 203 PYECGFCSLKFSRRDNLRRHLKDQHS 228
PY CG C+ F+RRD L RH + HS
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIHS 26
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 32.6 bits (75), Expect = 0.003
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKHT 128
+ F C C + F + L+ H R HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HT 26
Score = 29.9 bits (68), Expect = 0.026
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLK 224
+ + C C+ F+R+++L+RH +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
Score = 28.7 bits (65), Expect = 0.061
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEK 102
F C VC R ++RH R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.8 bits (60), Expect = 0.29
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDK 202
+VC VC + E +KRH R HT +K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 31.6 bits (71), Expect = 0.010
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 181 CPYHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLK 224
C RH+ H +PY CG C KF + +L H+K
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 31.2 bits (70), Expect = 0.014
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 81 CDYHSPRSIDMRRHIRRHTGEKPFKCNFCFQCFTQNVSLQTHIRI 125
C RH+ H G +P+ C C + F L H++I
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 30.8 bits (70), Expect = 0.013
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKHT 128
K F C C + F ++ L HI+ H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKT-HQ 26
Score = 30.0 bits (68), Expect = 0.025
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGEK 102
F C C RS + +HI+ H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 29.6 bits (67), Expect = 0.034
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLK 224
K + C C +F R D+L +H+K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIK 23
Score = 28.1 bits (63), Expect = 0.095
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKDK 202
+ C CP +++ + +H++ H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 30.3 bits (69), Expect = 0.016
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKHT 128
KP+KC C + F+QN L H RI HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRI-HT 26
Score = 26.0 bits (58), Expect = 0.48
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 202 KPYECGFCSLKFSRRDNLRRH 222
KPY+C C FS+ L H
Sbjct: 1 KPYKCLECGKAFSQNSGLINH 21
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 30.0 bits (68), Expect = 0.022
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 101 EKPFKCNF--CFQCFTQNVSLQTHIRIKHTR 129
++P+ C+ C + F +N L H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKS-HQE 30
Score = 27.3 bits (61), Expect = 0.20
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 201 DKPYECGF--CSLKFSRRDNLRRHLK 224
D+PY C C F R +L RH K
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKK 26
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 29.9 bits (67), Expect = 0.036
Identities = 8/41 (19%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 90 DMRRHIRRHTGEKPFKCNFCF--QCFTQNVSLQTHIRIKHT 128
+ ++++ +K F+C F + F + ++++HI+ H
Sbjct: 6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQT-HL 44
Score = 25.3 bits (55), Expect = 1.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 189 ESMKRHLRKHTKDKPYECGFC--SLKFSRRDNLRRHLK 224
S+ ++ K DK +EC F + F RR N+R H++
Sbjct: 5 GSIDKY-VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQ 41
Score = 24.1 bits (52), Expect = 4.2
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 3 RHLRKHSGEKPYTCYFC--NFKSAHMSSINNHLKIKHLEK 40
K +K + C F +I +H++ ++
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 23.4 bits (50), Expect = 8.4
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 74 FNFTCLVCDYHSPRSIDMRRHIRRHTGEK 102
F C R ++R HI+ H ++
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 23.0 bits (49), Expect = 9.6
Identities = 4/29 (13%), Positives = 15/29 (51%)
Query: 174 YRYVCMVCPYHCRQNESMKRHLRKHTKDK 202
+ + C ++ +++ H++ H +D+
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 29.0 bits (65), Expect = 0.046
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 201 DKPYECGFCSLKFSRRDNLRRHLK 224
+KP+ C C KF+R D +RH K
Sbjct: 1 EKPFACDICGRKFARSDERKRHTK 24
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 28.6 bits (63), Expect = 0.066
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 12 KPYTCYFCNFKSAHMSSINNHLKIKH 37
K Y C +C F+SA S++ H+K KH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
Score = 27.0 bits (59), Expect = 0.27
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLKDQHSYD 230
K Y+C +C + + NL+ H+K +HS +
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
synthase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 410
Score = 32.1 bits (73), Expect = 0.079
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 232 FRSSTKKPGKYGVLIV--KGSNISTM 255
F+ KKP K G++++ G+N ST+
Sbjct: 48 FKLDLKKPEKLGIMLIGLGGNNGSTL 73
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 28.5 bits (64), Expect = 0.083
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 102 KPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
KP KC F C + +++ +L+TH+R HT
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRS-HT 28
Score = 25.4 bits (56), Expect = 1.0
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 202 KPYECGF--CSLKFSRRDNLRRHLK 224
KP++C F C +SR +NL+ HL+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLR 25
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 27.7 bits (62), Expect = 0.13
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 102 KPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
+P+ C C + F+++ L HIRI HT
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRI-HT 28
Score = 25.7 bits (57), Expect = 0.83
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 202 KPYECGF--CSLKFSRRDNLRRHLK 224
+PY C C +FSR +L RH++
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIR 25
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 27.7 bits (62), Expect = 0.16
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 102 KPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
+PF C + C + FT++ LQ H R HT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT-HT 28
Score = 25.4 bits (56), Expect = 0.90
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 202 KPYECGF--CSLKFSRRDNLRRHLK 224
+P+ C + C +F+R D L+RH +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKR 25
Score = 25.4 bits (56), Expect = 0.99
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 81 CDYHSPRSIDMRRHIRRHTGEK 102
C RS +++RH R HTGEK
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
Score = 22.7 bits (49), Expect = 8.4
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 176 YVCMV--CPYHCRQNESMKRHLRKHTKDK 202
++C C +++ ++RH R HT +K
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 27.8 bits (61), Expect = 0.19
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 202 KPYECGFCSLKFSRRDNLRRH 222
KPYEC C+ +F RD+ RH
Sbjct: 4 KPYECNICAKRFMWRDSFHRH 24
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 30.0 bits (66), Expect = 0.42
Identities = 25/201 (12%), Positives = 41/201 (20%), Gaps = 25/201 (12%)
Query: 78 CLVCDYHSPRSIDMRRHIRRHTGE--KPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQDK 135
L H+P ++ + Q TRL
Sbjct: 173 LLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRI 232
Query: 136 QESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHL 195
E +Y + L Y K
Sbjct: 233 PEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVS 292
Query: 196 RKHTKDKPYECGFCSLKF------SRRDNLRRHLKDQHSYDSFRSSTKKPG--------- 240
T + L+ R+ L L+D D F + G
Sbjct: 293 TVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP 352
Query: 241 --------KYGVLIVKGSNIS 253
++G+ +V S I+
Sbjct: 353 EQVKRIKEEFGIYMVGDSRIN 373
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 26.2 bits (57), Expect = 0.50
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 176 YVCMVCPYHCRQNESMKRHLRKHTKD 201
+ C +CPY R + + HLR HT D
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 24.6 bits (53), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGE 101
F C +C Y S S + H+R HTG+
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 22.7 bits (48), Expect = 8.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 11 EKPYTCYFCNFKSAHMSSINNHLK 34
E+P+ C C + S + S + HL+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLR 24
Score = 22.7 bits (48), Expect = 9.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 101 EKPFKCNFCFQCFTQNVSLQTHIR 124
E+PFKC C + L H+R
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLR 24
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.2 bits (58), Expect = 0.51
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 202 KPYECGF--CSLKFSRRDNLRRHLK 224
+PY C F C+ KF++ NL+ H+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHIL 25
Score = 25.8 bits (57), Expect = 0.74
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 102 KPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
+P+ C F C + F Q+ +L++HI H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT-HA 28
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.3 bits (57), Expect = 0.52
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 12 KPYTCYFCNFKSAHMSSINNHLKI 35
KPY C C++ +A SS+N HL+I
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRI 25
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.2 bits (57), Expect = 0.54
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 204 YECGFCSLKFSRRDNLRRHLKDQHSY 229
+ C C +R+ +L HL+ QHSY
Sbjct: 3 FHCPHCDTVIARKSDLGVHLRKQHSY 28
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 26.1 bits (57), Expect = 0.59
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 202 KPYECGFCSLKFSRRDNLRRHLKDQH 227
+P++C +CS + NL +H+K H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFH 26
Score = 23.8 bits (51), Expect = 4.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 102 KPFKCNFCFQCFTQNVSLQTHIRIKH 127
+PFKCN+C Q +L H++ H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFH 26
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 28.3 bits (63), Expect = 0.61
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 203 PYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPG 240
C FC F+ + H K +H ++ S K G
Sbjct: 15 HTPCLFCDRLFASAEETFSHCKLEHQFN-IDSMVHKHG 51
Score = 26.7 bits (59), Expect = 2.0
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 11 EKPYTCYFCNFKSAHMSSINNHLKIKH 37
+ C FC+ A +H K++H
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEH 39
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 25.4 bits (56), Expect = 0.85
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 102 KPFKCNF--CFQCFTQNVSLQTHIRIKHT 128
KPF+C F C + F+ + +L+TH+RI HT
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRI-HT 28
Score = 23.5 bits (51), Expect = 5.0
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 202 KPYEC--GFCSLKFSRRDNLRRH 222
KP++C C +FS NLR H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTH 23
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 25.4 bits (55), Expect = 0.85
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 204 YECGFCSLKFSRRDNLRRHLKDQH 227
Y C FC +F+R+DN+ H+K H
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKIIH 25
Score = 23.8 bits (51), Expect = 3.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 104 FKCNFCFQCFTQNVSLQTHIRIKH 127
+ C FCF+ FT+ ++ H++I H
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKIIH 25
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 135
Score = 27.9 bits (61), Expect = 0.90
Identities = 11/73 (15%), Positives = 23/73 (31%)
Query: 183 YHCRQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQHSYDSFRSSTKKPGKY 242
+ + + D+ G S S + H D+ + + +
Sbjct: 55 ESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFADKTALITRLKLLIAEQQV 114
Query: 243 GVLIVKGSNISTM 255
++VKGS + M
Sbjct: 115 ITILVKGSRSAAM 127
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 25.4 bits (55), Expect = 1.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 201 DKPYECGFCSLKFSRRDNLRRHLK 224
+KPY C C L+F R+D + H++
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVR 24
>d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma
brucei [TaxId: 5691]}
Length = 265
Score = 28.0 bits (62), Expect = 1.4
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 38 LEKIQ-CRYSILKLQSHEESLVQHAKRCSYVPRPNIQFNFTCLVCDY 83
EK+ + I + + +V+ AKR + F + L+ ++
Sbjct: 34 CEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEF 80
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 25.1 bits (54), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 76 FTCLVCDYHSPRSIDMRRHIRRHTGE 101
FTC VC R +++R H+ HTGE
Sbjct: 5 FTCSVCQETFRRRMELRLHMVSHTGE 30
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 24.8 bits (54), Expect = 1.6
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 175 RYVCMVCPYHCRQNESMKRHLRKHTKDK 202
+Y+C C ++ +K+H+R HT +
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDVR 28
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 23.9 bits (51), Expect = 3.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 203 PYECGFCSLKFSRRDNLRRHLK 224
P++C C FSR+D L+ H++
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMR 22
Score = 23.5 bits (50), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 103 PFKCNFCFQCFTQNVSLQTHIR 124
P KC C +CF++ L+TH+R
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMR 22
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId:
7227]}
Length = 54
Score = 24.3 bits (52), Expect = 4.0
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 186 RQNESMKRHLRKHTKDKPYECGFCSLKFSRRDNLRRHLKDQH 227
+ ++ + ++P C C + NLRRHL+ +H
Sbjct: 7 KHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRH 48
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (51), Expect = 4.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 203 PYECGFCSLKFSRRDNLRRHLKDQ 226
PY C +C+ F + NL +H+K +
Sbjct: 1 PYHCTYCNFSFKTKGNLTKHMKSK 24
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 25.9 bits (56), Expect = 4.4
Identities = 14/69 (20%), Positives = 27/69 (39%)
Query: 140 RIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRHLRKHT 199
I + P L +++ KN K S YV + + ++ + K ++K+T
Sbjct: 13 DICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT 72
Query: 200 KDKPYECGF 208
+ Y F
Sbjct: 73 LNPYYNESF 81
>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase
{Escherichia coli [TaxId: 562]}
Length = 439
Score = 25.8 bits (57), Expect = 6.8
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 179 MVCPYHCRQNESMKRHLRKHTKDKPY--ECGFCSLKFSRRD 217
+V P CR++ + +L + E L+ S +
Sbjct: 317 LVLPQECREHAGVWGYLNELLAADNPISELKVFDLRESMAN 357
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken
(Gallus gallus), mitochondria [TaxId: 9031]}
Length = 401
Score = 25.7 bits (55), Expect = 8.6
Identities = 25/202 (12%), Positives = 54/202 (26%), Gaps = 26/202 (12%)
Query: 78 CLVCDYHSPRSIDMRRHIRRHTG---EKPFKCNFCFQCFTQNVSLQTHIRIKHTRLFGQD 134
L H+P +D R+ + +K + + S + R F +
Sbjct: 179 LLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQ 238
Query: 135 KQESTRIYCTFCRDPLYNDLKILLQHTKNCKGAFRENDSYRYVCMVCPYHCRQNESMKRH 194
+ LY + + +S + + Y +
Sbjct: 239 GIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIA 298
Query: 195 LRKHTKDKPYECGFCSLKF------SRRDNLRRHLKDQHSYDSFRSSTKKPG-------- 240
+ + +K S R L +LK + S +++ T + G
Sbjct: 299 SLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK 358
Query: 241 ---------KYGVLIVKGSNIS 253
++ + + K IS
Sbjct: 359 PEQVERLTKEFSIYMTKDGRIS 380
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.429
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,140,494
Number of extensions: 53355
Number of successful extensions: 494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 187
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.9 bits)