BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4411
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ML4|A Chain A, The Pala-Liganded Aspartate Transcarbamoylase Catalytic
Subunit From Pyrococcus Abyssi
Length = 308
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 32/119 (26%)
Query: 5 SNLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VK 32
+L DT+ + Y DVIV+RHP+ GA +K
Sbjct: 88 ESLRDTIKTVEQYCDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIK 147
Query: 33 EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
+E GR++GL I ++GDLK GRTVHSLA LT YDV+L +SP L MP I E + KG
Sbjct: 148 KEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKG 206
>pdb|2RGW|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|3E2P|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|I Chain I, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|J Chain J, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|K Chain K, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|L Chain L, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|M Chain M, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|N Chain N, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|4EKN|B Chain B, Structure Of The Catalytic Chain Of Methanococcus
Jannaschii Aspartate Transcarbamoylase In A Hexagonal
Crystal Form
Length = 306
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 35/127 (27%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------E 33
+LIDT+ V+SGYAD+IVLRHP GA +
Sbjct: 85 SLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMR 144
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGK 92
E+GR++G+ I VGDLK GRTVHSL L+L++ V++ +VSP L +P+ I E + K K
Sbjct: 145 EIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDL--KAK 202
Query: 93 QQEVYER 99
+ YE+
Sbjct: 203 NIKFYEK 209
>pdb|2BE7|A Chain A, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|B Chain B, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|C Chain C, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
Length = 326
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 33/110 (30%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------EE 34
L D+++V+S YAD V+RHP+ GA + E
Sbjct: 105 LADSISVISSYADAFVMRHPQEGAARLASEFSNVPVINGGDGSNQHPTQTLLDLFSIYET 164
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESI 83
GR++ L I VGDLK GRTVHSLA+ L +D K ++++P L MPE I
Sbjct: 165 QGRLDNLNIAFVGDLKYGRTVHSLAQALAKFDGCKFHFIAPDALAMPEYI 214
>pdb|1EZZ|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1EZZ|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1F1B|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1F1B|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
Length = 310
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206
>pdb|1SKU|A Chain A, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1SKU|C Chain C, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
Length = 310
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206
>pdb|1RAA|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAA|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|A Chain A, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|C Chain C, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|A Chain A, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|C Chain C, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|3CSU|A Chain A, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|B Chain B, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|C Chain C, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|1Q95|A Chain A, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|B Chain B, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|C Chain C, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|D Chain D, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|E Chain E, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|F Chain F, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|A Chain A, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|B Chain B, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|C Chain C, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|D Chain D, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|E Chain E, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|F Chain F, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0C|A Chain A, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1R0C|G Chain G, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1ZA1|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA1|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA2|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|1ZA2|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|2AIR|A Chain A, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2AIR|G Chain G, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2FZC|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZC|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZG|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZG|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZK|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2FZK|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2H3E|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2H3E|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2IPO|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2IPO|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2QG9|A Chain A, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QG9|C Chain C, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QGF|A Chain A, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
pdb|2QGF|C Chain C, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
pdb|3D7S|A Chain A, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3D7S|C Chain C, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|4F04|A Chain A, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4F04|C Chain C, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4FYV|A Chain A, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYV|C Chain C, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYW|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYW|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYX|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYX|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYY|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
pdb|4FYY|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
Length = 310
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206
>pdb|3MPU|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|C Chain C, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|E Chain E, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3NPM|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked C6
Aspartate Transcarbamoylase Enzyme
Length = 310
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206
>pdb|1D09|A Chain A, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1D09|C Chain C, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
Length = 310
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA +++
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQ 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MPE I + + KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKG 206
>pdb|1TTH|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TTH|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TU0|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TU0|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TUG|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1TUG|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
Length = 310
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206
>pdb|2A0F|A Chain A, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2A0F|C Chain C, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2HSE|A Chain A, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
pdb|2HSE|C Chain C, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
Length = 310
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206
>pdb|1EKX|A Chain A, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
pdb|1EKX|B Chain B, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
pdb|1EKX|C Chain C, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
Length = 311
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 89 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 149 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 207
>pdb|1XJW|A Chain A, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
pdb|1XJW|C Chain C, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
Length = 310
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTATLLDLFTIQE 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206
>pdb|1AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|1AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|2AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|2AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|4AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|4AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|5AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|5AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|7AT1|A Chain A, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
pdb|7AT1|C Chain C, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
pdb|8AT1|A Chain A, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|8AT1|C Chain C, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|8ATC|A Chain A, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|8ATC|C Chain C, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|1NBE|A Chain A, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
pdb|1NBE|C Chain C, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
Length = 310
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA +++
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQ 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MPE I + + KG
Sbjct: 148 TEGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKG 206
>pdb|1ACM|A Chain A, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
pdb|1ACM|C Chain C, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
Length = 310
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA +++
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQ 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MPE I + + KG
Sbjct: 148 TEGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKG 206
>pdb|4E2F|I Chain I, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|K Chain K, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|G Chain G, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|E Chain E, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
Length = 310
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDL+ GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 148 TQGRLDNLHVAMVGDLEYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206
>pdb|9ATC|A Chain A, Atcase Y165f Mutant
Length = 310
Score = 68.6 bits (166), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 88 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 148 TQGRLDNLHVAMVGDLKFGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206
>pdb|2ATC|A Chain A, Crystal And Molecular Structures Of Native And
Ctp-Liganded Aspartate Carbamoyltransferase From
Escherichia Coli
Length = 305
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L +T++V+S Y D IV+RHP+ GA +++
Sbjct: 88 LANTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQ 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR+N L + MVGDLK GRTVHSL + L +D + +++P L MPE I + + KG
Sbjct: 148 TEGRLNNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKG 206
>pdb|1I5O|A Chain A, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1I5O|C Chain C, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1GQ3|A Chain A, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
pdb|1GQ3|B Chain B, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
pdb|1GQ3|C Chain C, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
Length = 310
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+ HP+ GA ++E
Sbjct: 88 LADTISVISTYVDAIVMAHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L + MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 148 TQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 206
>pdb|3LXM|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
pdb|3LXM|B Chain B, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
pdb|3LXM|C Chain C, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
Length = 335
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 34/126 (26%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 113 LADTMSVISTYVDAIVMRHPQEGASRLAAQFSGNVPIVNAGDGANQHPTQTLLDLFTIQE 172
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGK 92
GR++ + I MVGDLK GRTVHSL + L ++ +++P L MP I + + K
Sbjct: 173 TQGRLDNINIAMVGDLKYGRTVHSLTQALAKFNGNHFFFIAPDALAMPAYILQMLEEKEI 232
Query: 93 QQEVYE 98
+ ++E
Sbjct: 233 EYSLHE 238
>pdb|1PG5|A Chain A, Crystal Structure Of The Unligated (t-state) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 299
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 32/104 (30%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
NL DT+ +L+ Y+D IV+RH GA + +
Sbjct: 83 NLADTIRMLNNYSDGIVMRHKYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINK 142
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77
++GL ++GDLK RTV+SL R+LT + KL Y+ P L
Sbjct: 143 HFNTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQL 186
>pdb|2BE9|A Chain A, Crystal Structure Of The Ctp-Liganded (T-State) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 300
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 32/104 (30%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
NL DT+ +L+ Y+D IV+RH GA + +
Sbjct: 84 NLADTIRMLNNYSDGIVMRHKYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINK 143
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77
++GL ++GDLK RTV+SL R+LT + KL Y+ P L
Sbjct: 144 HFNTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQL 187
>pdb|3D6N|B Chain B, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 291
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 24 RHPEPG-----AVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG 78
+HP G +KE G V L + VGD+K+ R S A LL ++ K+ P L
Sbjct: 125 QHPSQGLIDFFTIKEHFGEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTL- 183
Query: 79 MPESIQEF 86
+P ++ F
Sbjct: 184 IPRDVEVF 191
>pdb|2W37|A Chain A, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
pdb|2W37|B Chain B, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
pdb|2W37|C Chain C, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
Length = 359
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 31 VKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQ 84
VKE G++ GLT+T +GD +N +SL + V ++ V+P L E Q
Sbjct: 167 VKENFGKLQGLTLTFMGDGRNN-VANSLLVTGAILGVNIHIVAPKALFPTEETQ 219
>pdb|2AT2|A Chain A, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
pdb|2AT2|B Chain B, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
pdb|2AT2|C Chain C, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
Length = 300
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 30 AVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75
+ EE GLT+++ GD+K+ R S A +LT ++ + P
Sbjct: 137 TIYEEFNTFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPS 182
>pdb|3R7D|A Chain A, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7D|B Chain B, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7D|C Chain C, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7F|A Chain A, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7F|B Chain B, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7F|C Chain C, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7L|A Chain A, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|B Chain B, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|C Chain C, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|D Chain D, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|E Chain E, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|F Chain F, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
Length = 304
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 30 AVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75
+ EE GLT+++ GD+K+ R S A +LT ++ + P
Sbjct: 137 TIYEEFNTFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPS 182
>pdb|1XXA|A Chain A, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXA|B Chain B, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXA|C Chain C, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXA|D Chain D, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXA|E Chain E, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXA|F Chain F, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXB|A Chain A, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXB|B Chain B, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXB|C Chain C, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXB|D Chain D, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXB|E Chain E, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXB|F Chain F, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXC|A Chain A, C-Terminal Domain Of Escherichia Coli Arginine Repressor
pdb|1XXC|B Chain B, C-Terminal Domain Of Escherichia Coli Arginine Repressor
pdb|1XXC|C Chain C, C-Terminal Domain Of Escherichia Coli Arginine Repressor
pdb|1XXC|D Chain D, C-Terminal Domain Of Escherichia Coli Arginine Repressor
pdb|1XXC|E Chain E, C-Terminal Domain Of Escherichia Coli Arginine Repressor
pdb|1XXC|F Chain F, C-Terminal Domain Of Escherichia Coli Arginine Repressor
Length = 78
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 17 YADVIVLRHPEPGAVK------EEMGRVNGLTITMVGDL------KNGRTVHSL-ARLLT 63
Y D +V+ H PGA + + +G+ G+ T+ GD NG TV L +L
Sbjct: 13 YNDAVVVIHTSPGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILE 72
Query: 64 LYDVKL 69
L+D +L
Sbjct: 73 LFDQEL 78
>pdb|4EP1|A Chain A, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
pdb|4EP1|B Chain B, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
Length = 340
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 21/81 (25%)
Query: 9 DTVAVLSGYADVIVLRHPEPGAVKEEMGR------VNGLTITMVGDLKNGRTVHSLARLL 62
DT VLS Y D I++R V EE+ + +NGLT + +LA L+
Sbjct: 117 DTAKVLSHYIDGIMIRTFSHADV-EELAKESSIPVINGLT-------DDHHPCQALADLM 168
Query: 63 TLYD-------VKLNYVSPPN 76
T+Y+ +KL YV N
Sbjct: 169 TIYEETNTFKGIKLAYVGDGN 189
>pdb|2JQV|A Chain A, Solution Structure At3g28950.1 From Arabidopsis Thaliana
Length = 165
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 9 DTV-AVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGD 48
DTV AVL GY + P P V + G+VNG IT V D
Sbjct: 32 DTVPAVLHGYHRYKLKGLPYPCIVSSDSGKVNGKVITGVSD 72
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 2 MMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGR 53
+++ + + +A+L G D + LRHP PG GL + ++G++ R
Sbjct: 356 LLFKDEVRELALLLGLPDTLRLRHPFPGP---------GLAVRVLGEVTEER 398
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 2 MMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGR 53
+++ + + +A+L G D + LRHP PG GL + ++G++ R
Sbjct: 356 LLFKDEVRELALLLGLPDTLRLRHPFPGP---------GLAVRVLGEVTEER 398
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGK 92
G+T+ ++L+L V + YV P PE+++E +++K +
Sbjct: 106 GQTIGLFGQVLSLMGVTVRYVDPE----PEAVREALSAKTR 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,933,844
Number of Sequences: 62578
Number of extensions: 104282
Number of successful extensions: 244
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 57
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)