BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4411
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P08955|PYR1_MESAU CAD protein OS=Mesocricetus auratus GN=CAD PE=1 SV=4
Length = 2225
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 78/125 (62%), Gaps = 32/125 (25%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
+L D+V +S YADV+VLRHP+PGAV +E
Sbjct: 2006 SLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIRE 2065
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
E+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP S+ +FVAS+G +
Sbjct: 2066 ELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPSVWDFVASRGTK 2125
Query: 94 QEVYE 98
QE +E
Sbjct: 2126 QEEFE 2130
>sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3
Length = 2225
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 78/125 (62%), Gaps = 32/125 (25%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
+L D+V +S YADV+VLRHP+PGAV +E
Sbjct: 2006 SLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIRE 2065
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
E+G VNG+TITMVGDLK+GRTVHSLA LLT Y V L YV+PP+L MP +++ FVAS+G +
Sbjct: 2066 ELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASRGTK 2125
Query: 94 QEVYE 98
QE +E
Sbjct: 2126 QEEFE 2130
>sp|Q91437|PYR1_SQUAC CAD protein OS=Squalus acanthias GN=CAD PE=2 SV=1
Length = 2242
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 77/125 (61%), Gaps = 32/125 (25%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
+L+D+V +S Y DV+VLRHPEPGAV +E
Sbjct: 2023 SLLDSVQTMSCYVDVVVLRHPEPGAVELAAKHSRKPIINAGDGVGEHPTQALLDIFTIRE 2082
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
E+G VNG+TITMVGDLK+GRTVHSLA LLTLY V L YV+P NL MP +I F+AS+G +
Sbjct: 2083 ELGTVNGMTITMVGDLKHGRTVHSLAYLLTLYRVNLRYVTPRNLRMPPNIIRFLASRGIK 2142
Query: 94 QEVYE 98
QE ++
Sbjct: 2143 QEEFD 2147
>sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r PE=1 SV=3
Length = 2224
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 74/121 (61%), Gaps = 32/121 (26%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
+L D++ V+S YADV+VLRHP PGAV +E
Sbjct: 2001 SLEDSIKVVSSYADVVVLRHPSPGAVARAATFSRKPLINAGDGVGEHPTQALLDIFTIRE 2060
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
E G VNGLTITMVGDLKNGRTVHSLARLLTLY+V L YV+P +L MP+ + +FV +G +
Sbjct: 2061 EFGTVNGLTITMVGDLKNGRTVHSLARLLTLYNVNLQYVAPNSLQMPDEVVQFVHQRGVK 2120
Query: 94 Q 94
Q
Sbjct: 2121 Q 2121
>sp|P20054|PYR1_DICDI Protein PYR1-3 OS=Dictyostelium discoideum GN=pyr1-3 PE=1 SV=3
Length = 2225
Score = 92.8 bits (229), Expect = 5e-19, Method: Composition-based stats.
Identities = 51/124 (41%), Positives = 67/124 (54%), Gaps = 32/124 (25%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KE 33
++ DT+ L Y D + +RHP G+V +E
Sbjct: 2005 SIADTIQTLESYCDAVCMRHPAVGSVESAIQVAKKPIINAGDGVGEHPTQALLDVFTIRE 2064
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
E+G VNGLTIT+VGDLK+GRTVHSL RLL Y VK+NYVSP +L MP I + + KG +
Sbjct: 2065 ELGTVNGLTITVVGDLKHGRTVHSLVRLLANYQVKINYVSPSSLSMPTEIIKELNEKGIE 2124
Query: 94 QEVY 97
Q+ Y
Sbjct: 2125 QKEY 2128
>sp|P07259|PYR1_YEAST Protein URA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=URA2 PE=1 SV=5
Length = 2214
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 32/117 (27%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEE 34
L DT+ L+ Y+D IV+RH E +V +EE
Sbjct: 1994 LQDTIRTLACYSDAIVMRHSEEMSVHIAAKYSPVPIINGGNGSREHPTQAFLDLFTIREE 2053
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
+G VNG+T+T +GDLK+GRTVHSL RLL Y V++N VSPP L +PE ++E + G
Sbjct: 2054 IGTVNGITVTFMGDLKHGRTVHSLCRLLMHYQVRINLVSPPELRLPEGLREELRKAG 2110
>sp|P77918|PYRB_PYRAB Aspartate carbamoyltransferase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=pyrB PE=1 SV=1
Length = 308
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 32/119 (26%)
Query: 5 SNLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VK 32
+L DT+ + Y DVIV+RHP+ GA +K
Sbjct: 88 ESLRDTIKTVEQYCDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIK 147
Query: 33 EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
+E GR++GL I ++GDLK GRTVHSLA LT YDV+L +SP L MP I E + KG
Sbjct: 148 KEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKG 206
>sp|Q09794|PYR1_SCHPO Protein ura1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ura1 PE=1 SV=1
Length = 2244
Score = 82.4 bits (202), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 32/118 (27%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
+L DT+ L Y D IVLRHP + ++E
Sbjct: 2019 SLADTIRTLGCYGDAIVLRHPSIESARIAANFSPVPIINGGNGSKEHPTQAFLDLYTIRE 2078
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
E+G VNGLTIT +GDLK GRTVHSLARLL + V+L+ VSP L +P+ +++ + + G
Sbjct: 2079 ELGSVNGLTITFIGDLKYGRTVHSLARLLAFWHVELHLVSPEQLALPDDVKDDIRANG 2136
>sp|A5EVP6|PYRB_DICNV Aspartate carbamoyltransferase OS=Dichelobacter nodosus (strain
VCS1703A) GN=pyrB PE=3 SV=1
Length = 348
Score = 82.4 bits (202), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 37/130 (28%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVN-------------------------- 39
+L DT V++GYADVIV+RHP+ G+V E ++N
Sbjct: 89 SLSDTARVIAGYADVIVMRHPDQGSVAEFASKINVPVINAGDGIGEHPSQALLDYYTINN 148
Query: 40 ----------GLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVA 88
G+TI MVGDLKNGRT+HSLA+LL+L+D + +++P L P + E +
Sbjct: 149 EFERLKKNIDGMTIAMVGDLKNGRTIHSLAKLLSLFDNIHFRFIAPETLRAPAELLELLR 208
Query: 89 SKGKQQEVYE 98
S+G + ++
Sbjct: 209 SRGHDVQEFD 218
>sp|Q58976|PYRB_METJA Aspartate carbamoyltransferase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pyrB PE=1 SV=1
Length = 306
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 35/127 (27%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------E 33
+LIDT+ V+SGYAD+IVLRHP GA +
Sbjct: 85 SLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMR 144
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGK 92
E+GR++G+ I VGDLK GRTVHSL L+L++ V++ +VSP L +P+ I E + K K
Sbjct: 145 EIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDL--KAK 202
Query: 93 QQEVYER 99
+ YE+
Sbjct: 203 NIKFYEK 209
>sp|O30130|PYRB_ARCFU Aspartate carbamoyltransferase OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=pyrB PE=3 SV=1
Length = 299
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 32/125 (25%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
L DT+ V+SGY D IV+RHP GA +K+
Sbjct: 86 TLADTIRVVSGYCDAIVIRHPLEGAARFAAENSSVPVINAGDGAGQHPTQTLLDLYTIKK 145
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
E GR++G+TI ++GDLK RT+HSL + L L+D+++ +SP L +PE I E V+++ ++
Sbjct: 146 ECGRLDGITIALMGDLKYSRTIHSLIKALALFDMRIYLISPEALALPEDIIEDVSAEIRR 205
Query: 94 QEVYE 98
+ E
Sbjct: 206 ARLEE 210
>sp|A0KQG0|PYRB_AERHH Aspartate carbamoyltransferase OS=Aeromonas hydrophila subsp.
hydrophila (strain ATCC 7966 / NCIB 9240) GN=pyrB PE=3
SV=2
Length = 306
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 32/125 (25%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------E 33
L D++ ++ Y D +V+RHP+ GA + E
Sbjct: 87 TLADSIKIIGSYTDAVVMRHPKEGAARLASEFSRVPVINGGDGSNQHPTQTLLDLFSIHE 146
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
G+++GL + VGDLK GRTVHSLA+ L+L++ + ++SP L MP+ I E + KG Q
Sbjct: 147 TQGKLDGLNVAFVGDLKYGRTVHSLAQALSLFNCRFFFISPEALAMPDYICEELEEKGIQ 206
Query: 94 QEVYE 98
V+E
Sbjct: 207 FSVHE 211
>sp|O93937|PYR1_EMENI Protein pyrABCN OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pyrABCN PE=3 SV=2
Length = 2275
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 32/118 (27%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKEE 34
L DT+ L Y D +VLRHPEP + ++EE
Sbjct: 2038 LQDTLRTLGCYGDAVVLRHPEPSSTEVAAKFSPVPVINGGNGSVEHPTQAFLDLFTIREE 2097
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGK 92
+G V GLTIT GDLK GR VHSL +LL YDV++ V+P +L +P I++ + + G+
Sbjct: 2098 LGTVGGLTITFTGDLKYGRPVHSLIKLLQFYDVRVQLVAPKDLSLPADIRQQLLATGQ 2155
>sp|A6UQU0|PYRB_METVS Aspartate carbamoyltransferase OS=Methanococcus vannielii (strain
SB / ATCC 35089 / DSM 1224) GN=pyrB PE=3 SV=1
Length = 302
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 33/118 (27%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
+L DT+ V+SGY+D+IV+RHP GA +K
Sbjct: 85 SLTDTIKVISGYSDLIVIRHPSEGAARLSSEVSGVPVINAGDGSNQHPTQTLLDLYTIKR 144
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASK 90
E+G+++GL I +GDLK GRTVHSL + L+L+ +V+L +SP L +P + E++ K
Sbjct: 145 EVGKIDGLKIAFIGDLKYGRTVHSLCQALSLFKNVELRLISPDELKIPREVLEYIDGK 202
>sp|Q7P145|PYRB_CHRVO Aspartate carbamoyltransferase OS=Chromobacterium violaceum (strain
ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB
9131 / NCTC 9757) GN=pyrB PE=3 SV=1
Length = 302
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 32/118 (27%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
L D++ ++S Y D +V+RHP+ GA ++E
Sbjct: 83 TLADSIKIISSYTDAVVMRHPKEGAARLASEFSAVPVINGGDGSNQHPTQTLLDLFSIRE 142
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
GR++GLT+ GDLK GRTVHSLA+ L+L+ + +VSP L MP+ I E + KG
Sbjct: 143 TQGRLDGLTVAFAGDLKYGRTVHSLAQALSLFGARFYFVSPEVLAMPDYICEELDEKG 200
>sp|A4SHP8|PYRB_AERS4 Aspartate carbamoyltransferase OS=Aeromonas salmonicida (strain
A449) GN=pyrB PE=3 SV=1
Length = 306
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 32/125 (25%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------E 33
L D++ ++ Y+D +V+RHP+ GA + E
Sbjct: 87 TLADSIKIIGSYSDAVVMRHPKEGAARLASEFSRVPVINGGDGSNQHPTQTLLDLFSIHE 146
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
G+++GL + VGDLK GRTVHSLA+ L+L++ + ++SP L MP+ I E + KG +
Sbjct: 147 TQGKLDGLNVAFVGDLKYGRTVHSLAQALSLFNCRFFFISPDALAMPDYICEELEEKGIR 206
Query: 94 QEVYE 98
V+E
Sbjct: 207 FSVHE 211
>sp|Q8U373|PYRB_PYRFU Aspartate carbamoyltransferase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=pyrB PE=3 SV=1
Length = 308
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 32/118 (27%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
+L DT+ + Y+DVIV+RHP+ GA +++
Sbjct: 89 SLADTIKTVEQYSDVIVIRHPKEGAARLAAEVAEIPVINAGDGSNQHPTQTLLDLYTIRK 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
E G+++GL I ++GDLK GRTVHSLA L YDV+L +SP L MP I E + KG
Sbjct: 149 EFGKIDGLKIGLLGDLKYGRTVHSLAEALAYYDVELYLISPELLRMPRHIVEELREKG 206
>sp|O58451|PYRB_PYRHO Aspartate carbamoyltransferase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pyrB PE=3 SV=1
Length = 308
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 32/118 (27%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
+L DT+ + Y+DVIV+RHP+ GA +K+
Sbjct: 89 SLRDTIKTVEQYSDVIVIRHPKEGAARLAAEVADIPVINAGDGSNQHPTQTLLDLYTIKK 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
E G ++GL I ++GDLK GRTVHSLA L YDV+L +SP L MP+ I E + +G
Sbjct: 149 EFGTIDGLKIGLLGDLKYGRTVHSLAEALAFYDVELYLISPELLRMPKHIVEELRERG 206
>sp|B6YXW4|PYRB_THEON Aspartate carbamoyltransferase OS=Thermococcus onnurineus (strain
NA1) GN=pyrB PE=3 SV=1
Length = 310
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 32/118 (27%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
+L DT+ + Y+DVIV+RHP GA +K
Sbjct: 89 SLADTIKTVEQYSDVIVIRHPMEGAARLAAEVAEIPVINAGDGSNQHPTQTLLDLYTIKR 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
GR++GL I ++GDLK GRTVHSLA L YDV+L +SP L MP+ I E + KG
Sbjct: 149 AFGRIDGLRIGLLGDLKYGRTVHSLAEALAFYDVELYLISPELLRMPKHIVEELREKG 206
>sp|C5A2H1|PYRB_THEGJ Aspartate carbamoyltransferase OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=pyrB PE=3 SV=1
Length = 308
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 60/118 (50%), Gaps = 32/118 (27%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
+L DT+ + Y+DVIV+RHP GA +K
Sbjct: 89 SLADTIRTVEQYSDVIVIRHPMEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKR 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
G+++GLTI ++GDLK GRTVHSLA L YDV+L +SP L MP+ I E + +G
Sbjct: 149 AFGKIDGLTIGLLGDLKYGRTVHSLAEALAFYDVELYLISPELLRMPKHIVEELRERG 206
>sp|Q5JHM9|PYRB_PYRKO Aspartate carbamoyltransferase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=pyrB PE=3 SV=1
Length = 310
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 34/125 (27%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
+L DT+ + Y+DVIV+RHP GA +K+
Sbjct: 89 SLADTIKTVEQYSDVIVIRHPMEGAARLAAEVAGIPVINAGDGSNQHPTQTLLDLYTIKK 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
G+++GLTI ++GDLK GRTVHSLA L YDV+L +SP L MP+ I + + +G +
Sbjct: 149 AFGKIDGLTIGLLGDLKYGRTVHSLAEALAFYDVELYLISPELLRMPKHIVDELRERGVK 208
Query: 94 QEVYE 98
VYE
Sbjct: 209 --VYE 211
>sp|Q43086|PYRB1_PEA Aspartate carbamoyltransferase 1, chloroplastic OS=Pisum sativum
GN=PYRB1 PE=2 SV=1
Length = 386
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 33/122 (27%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPG--------------------------------AVKEE 34
L DT+ + GY+D+IVLRH E G ++ E
Sbjct: 166 LEDTIRTVEGYSDIIVLRHFESGAARRAAATANIPVINAGDGPGQHPSQALLDVYTIERE 225
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKGKQ 93
+G+++G+ + +VGDL NGRTV SLA LL Y DVKL +VSP + M + I+E++ SKG +
Sbjct: 226 IGKLDGIKVGLVGDLANGRTVRSLAYLLAKYRDVKLYFVSPNVVKMKDDIKEYLTSKGVE 285
Query: 94 QE 95
E
Sbjct: 286 WE 287
>sp|C1D9A7|PYRB_LARHH Aspartate carbamoyltransferase OS=Laribacter hongkongensis (strain
HLHK9) GN=pyrB PE=3 SV=1
Length = 308
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 33/118 (27%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVK---------------------------------E 33
L D+V +++ Y D V+RHP+ GA + E
Sbjct: 89 LADSVQIITSYVDAYVMRHPQEGAARLASMFSNGKPVINGGDGSNQHPTQTLLDLFSIYE 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
GR++GL + VGDLK GRTVHSLA+ L+L+ + +++P L MPE I E + KG
Sbjct: 149 TQGRLDGLKVAFVGDLKYGRTVHSLAQALSLFGCRFYFIAPEALAMPEYICEELDDKG 206
>sp|Q8TVB2|PYRB_METKA Aspartate carbamoyltransferase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pyrB PE=3
SV=1
Length = 309
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 32/124 (25%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------E 33
NL DTV + Y DVIVLRHP+ GA + +
Sbjct: 89 NLADTVRTVEHYCDVIVLRHPKEGAARLAAELTDVPVINAGDGANQHPTQTFLDLYTIMK 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
E GR+ GL I ++GDLK GRTVHSLA L L+ K++ +SP L MP I E + G +
Sbjct: 149 EKGRIGGLRIGLLGDLKYGRTVHSLAYALALFGAKIHLISPEELRMPSHILEELEQIGAE 208
Query: 94 QEVY 97
E +
Sbjct: 209 VEEH 212
>sp|Q9HKM2|PYRB_THEAC Aspartate carbamoyltransferase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=pyrB PE=3 SV=1
Length = 305
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 32/122 (26%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
L DT+ + S Y+D+IV+RHP GA +K
Sbjct: 88 TLADTIRMASSYSDIIVIRHPLEGAARLASKFANKPVINAGDGSGQHPTQTILDLYTIKR 147
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
E G ++G TITMVGDL+ GRT+HSL L+ +DV++N VSP L +PE + + + +
Sbjct: 148 ETGSIDGKTITMVGDLRYGRTIHSLIIALSRFDVRINLVSPQILKLPEYVLTKIGDRSRI 207
Query: 94 QE 95
E
Sbjct: 208 ME 209
>sp|Q97B29|PYRB_THEVO Aspartate carbamoyltransferase OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=pyrB PE=3 SV=1
Length = 305
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 32/121 (26%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKEE 34
L DTV + S Y+D+IV+RHP GA +K+E
Sbjct: 89 LADTVRMASSYSDIIVIRHPLEGAARLASRFTSKPIINAGDGSGQHPTQTILDLFTIKKE 148
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94
+G ++G ITMVGDL+ GRT+HSL L+ +DVK+N VSP L +PE + + + +
Sbjct: 149 LGSIDGKVITMVGDLRYGRTIHSLIIALSRFDVKVNLVSPEILRLPEYVYSMLPDRNYVK 208
Query: 95 E 95
E
Sbjct: 209 E 209
>sp|Q6LWQ0|PYRB_METMP Aspartate carbamoyltransferase OS=Methanococcus maripaludis (strain
S2 / LL) GN=pyrB PE=3 SV=1
Length = 302
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 33/124 (26%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
+L DT+ V+SGY+D+I +RHP GA +K
Sbjct: 85 SLADTIKVISGYSDLIAIRHPSEGAARLSSENSKVPVINAGDGSNQHPTQTLLDLYTIKR 144
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGK 92
E+G + L I +GDLK GRTVHSL + L+L+ V++ +SP L MP + E +A K K
Sbjct: 145 EVGHIENLKIAFIGDLKYGRTVHSLCQALSLFKGVEIKLISPDELKMPREVIEDIAGKIK 204
Query: 93 QQEV 96
E+
Sbjct: 205 LSEM 208
>sp|Q21I34|PYRB_SACD2 Aspartate carbamoyltransferase OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=pyrB PE=3 SV=1
Length = 337
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 37/128 (28%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAVKE-------------------------------- 33
+L DT VLSGY+DVI +RHP+ G+V E
Sbjct: 89 SLYDTARVLSGYSDVICMRHPQEGSVAEFAQASRVPVINGGDGANEHPSQALLDLYTIQK 148
Query: 34 ---EMGR-VNGLTITMVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVA 88
+ GR ++GL I M+GDLK+GRTVHSL RLL L+ ++++ VSP L MPE E +
Sbjct: 149 ELRDKGRSLDGLRIAMIGDLKHGRTVHSLMRLLGLFANLQVVLVSPEELAMPEEYVELLR 208
Query: 89 SKGKQQEV 96
G + +V
Sbjct: 209 GLGHRVDV 216
>sp|Q0W5I2|PYRB_UNCMA Aspartate carbamoyltransferase OS=Uncultured methanogenic archaeon
RC-I GN=pyrB PE=3 SV=1
Length = 308
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 58/119 (48%), Gaps = 33/119 (27%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAVK--EEMGRV------------------------- 38
L DT+ ++ YAD IVLRHP+ GA + E+ RV
Sbjct: 87 TLADTIRIIDSYADAIVLRHPKEGAARMASEISRVPVINAGDGAGHHPTQTLLDLYTMRK 146
Query: 39 ------NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
L + +VGDLK GRTVHSLA L+LY L++VSP L MP SI ++ KG
Sbjct: 147 ECKKAICDLNVAIVGDLKYGRTVHSLAYALSLYGANLSFVSPEQLKMPGSIINYLKRKG 205
>sp|Q8PXK5|PYRB_METMA Aspartate carbamoyltransferase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=pyrB PE=3 SV=1
Length = 309
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 54/114 (47%), Gaps = 31/114 (27%)
Query: 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVK---------------------------- 32
+M NL DT+ V+S YAD+IVLRHP G+ +
Sbjct: 85 VMKGENLADTIRVISKYADLIVLRHPLDGSARMATEFAAVPVINGGDGSVHHPTQTFLDL 144
Query: 33 ---EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESI 83
+ GL I M GDLK GRTVHSL L+LY ++ +VSPP L MP I
Sbjct: 145 YTIRRESHLEGLKIAMAGDLKYGRTVHSLCYALSLYGAEMTFVSPPELRMPREI 198
>sp|Q43087|PYRB2_PEA Aspartate carbamoyltransferase 2, chloroplastic OS=Pisum sativum
GN=PYRB2 PE=2 SV=1
Length = 385
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 33/123 (26%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
L DT+ + GY+D+IVLRH E GA ++
Sbjct: 164 TLEDTIRTVEGYSDLIVLRHFESGAARRAATIAGIPIVNAGDGPGQHPSQALLDVYTIER 223
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKGK 92
E+G+++G+ + +VGDL NGRTV SL LL Y DVK+ +VSP + M + I++++ SKG
Sbjct: 224 EIGKLDGIKVGLVGDLANGRTVRSLTYLLAKYKDVKIYFVSPEVVKMKDDIKDYLTSKGV 283
Query: 93 QQE 95
E
Sbjct: 284 DWE 286
>sp|Q46DA6|PYRB_METBF Aspartate carbamoyltransferase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=pyrB PE=3 SV=1
Length = 308
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 54/114 (47%), Gaps = 31/114 (27%)
Query: 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVK---------------------------- 32
+M NL DT+ V+S YAD+IVLRHP G+ +
Sbjct: 84 VMKGENLADTIRVISKYADLIVLRHPLDGSARMAAEFASVPIINGGDGSLHHPTQTFLDL 143
Query: 33 ---EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESI 83
+ GL I M GDLK GRTVHSL L+LY ++ VSPP L MP+ I
Sbjct: 144 YTIRRESHLEGLKIAMAGDLKYGRTVHSLCHALSLYGAEITLVSPPELRMPQEI 197
>sp|P65616|PYRB_NEIMB Aspartate carbamoyltransferase OS=Neisseria meningitidis serogroup
B (strain MC58) GN=pyrB PE=3 SV=1
Length = 306
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 32/117 (27%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------EE 34
L DT ++SGY D I+ RHP+ GA + E
Sbjct: 88 LADTARIISGYTDAIIQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYET 147
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L I M GDLK GRTVHSL + L ++ + +VSPP+L MP+ I E + G
Sbjct: 148 QGRLDKLKIAMAGDLKYGRTVHSLCQALKRWNCEFAFVSPPSLAMPDYITEELDEAG 204
>sp|P65615|PYRB_NEIMA Aspartate carbamoyltransferase OS=Neisseria meningitidis serogroup
A / serotype 4A (strain Z2491) GN=pyrB PE=3 SV=1
Length = 306
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 32/117 (27%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------EE 34
L DT ++SGY D I+ RHP+ GA + E
Sbjct: 88 LADTARIISGYTDAIIQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYET 147
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L I M GDLK GRTVHSL + L ++ + +VSPP+L MP+ I E + G
Sbjct: 148 QGRLDKLKIAMAGDLKYGRTVHSLCQALKRWNCEFAFVSPPSLAMPDYITEELDEAG 204
>sp|A9A906|PYRB_METM6 Aspartate carbamoyltransferase OS=Methanococcus maripaludis (strain
C6 / ATCC BAA-1332) GN=pyrB PE=3 SV=1
Length = 302
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 33/124 (26%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
+L DT+ V+SGY+D+I +RHP GA +K
Sbjct: 85 SLADTIKVISGYSDLIAIRHPSEGAARLSSENSKVPVINAGDGSNQHPTQTLLDLYTIKR 144
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGK 92
E+G + L I +GDLK GRTVHSL + L+L+ V++ +SP L MP + E ++ K K
Sbjct: 145 EVGHIENLKIAFIGDLKYGRTVHSLCQALSLFKGVEIKLISPDELKMPREVIEDISGKIK 204
Query: 93 QQEV 96
E+
Sbjct: 205 LSEM 208
>sp|B0TSQ4|PYRB1_SHEHH Aspartate carbamoyltransferase 1 OS=Shewanella halifaxensis (strain
HAW-EB4) GN=pyrB1 PE=3 SV=1
Length = 310
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 32/117 (27%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------EE 34
L D+V V+S Y+D +RH + GA + E
Sbjct: 89 LADSVQVISSYSDAFFMRHNQEGAARLASEFSSVPVINGGDGSNQHPTQTLLDLFSIYET 148
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
G ++ L + VGDLK GRTVHSL + L+L+D + ++V+PP L MPE I + + KG
Sbjct: 149 QGTLDKLQVAFVGDLKYGRTVHSLTQALSLFDCEFHFVAPPALSMPEYIIDELKEKG 205
>sp|B4F2M2|PYRB_PROMH Aspartate carbamoyltransferase OS=Proteus mirabilis (strain HI4320)
GN=pyrB PE=3 SV=1
Length = 311
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 34/126 (26%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++VL YAD IV+RHP+ GA +KE
Sbjct: 89 LADTISVLRTYADAIVIRHPQEGAARLASEFAGDIPVINAGDGANQHPSQTLLDLFTIKE 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGK 92
GR++ L I MVGDLK GRTVHSLA+ L + L +++P L MPE I + G
Sbjct: 149 TQGRLDNLNIAMVGDLKYGRTVHSLAQALAKFTGNHLYFIAPKVLAMPEHILHLLEEHGV 208
Query: 93 QQEVYE 98
+ +E
Sbjct: 209 EYSQHE 214
>sp|A9M469|PYRB_NEIM0 Aspartate carbamoyltransferase OS=Neisseria meningitidis serogroup
C (strain 053442) GN=pyrB PE=3 SV=1
Length = 306
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 32/117 (27%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------EE 34
L DT ++SGY D I+ RHP+ GA + E
Sbjct: 88 LADTARIISGYTDAIIQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYET 147
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L I M GDLK GRTVHSL + L + + +VSPP+L MP+ I E + G
Sbjct: 148 QGRLDKLKIAMAGDLKYGRTVHSLCQALKRWGCEFAFVSPPSLAMPDYITEELDEAG 204
>sp|B4RPW7|PYRB_NEIG2 Aspartate carbamoyltransferase OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=pyrB PE=3 SV=1
Length = 306
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 53/111 (47%), Gaps = 32/111 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------EE 34
L DT ++SGY D IV RHP+ GA + E
Sbjct: 88 LADTARIISGYTDAIVQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYET 147
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQE 85
GR++ L I M GDLK GRTVHSL + L + + +VSPP+L MP+ I E
Sbjct: 148 QGRLDKLKIAMAGDLKYGRTVHSLCQALKRWGCEFAFVSPPSLAMPDYITE 198
>sp|Q5F5P0|PYRB_NEIG1 Aspartate carbamoyltransferase OS=Neisseria gonorrhoeae (strain
ATCC 700825 / FA 1090) GN=pyrB PE=3 SV=1
Length = 306
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 53/111 (47%), Gaps = 32/111 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------EE 34
L DT ++SGY D IV RHP+ GA + E
Sbjct: 88 LADTARIISGYTDAIVQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYET 147
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQE 85
GR++ L I M GDLK GRTVHSL + L + + +VSPP+L MP+ I E
Sbjct: 148 QGRLDKLKIAMAGDLKYGRTVHSLCQALKRWGCEFAFVSPPSLAMPDYITE 198
>sp|A1KRE1|PYRB_NEIMF Aspartate carbamoyltransferase OS=Neisseria meningitidis serogroup
C / serotype 2a (strain ATCC 700532 / FAM18) GN=pyrB
PE=3 SV=1
Length = 306
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 32/117 (27%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------EE 34
L DT ++SGY D I+ RHP+ GA + E
Sbjct: 88 LADTARIISGYTDAIIQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYET 147
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L I M GDLK GRTVHSL + L + + +VSPP+L MP+ I E + G
Sbjct: 148 QGRLDKLKIAMAGDLKYGRTVHSLCQALKRWGCEFAFVSPPSLAMPDYITEELDEAG 204
>sp|A8AMC8|PYRB_CITK8 Aspartate carbamoyltransferase OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=pyrB PE=3 SV=1
Length = 311
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 89 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGANQHPTQTLLDLFTIQE 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L I MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 149 TQGRLDNLNIAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 207
>sp|Q18J05|PYRB_HALWD Aspartate carbamoyltransferase OS=Haloquadratum walsbyi (strain DSM
16790) GN=pyrB PE=3 SV=1
Length = 304
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 33/119 (27%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------EE 34
L DTV V++GYAD IVLRHP GA K E
Sbjct: 86 LADTVRVIAGYADAIVLRHPSEGAAKLAAEFVDIPVINAGDGAGQHPTQTLLDLYTMREN 145
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
+G ++ +T+ + GDLK GRTVHSLA L+ +DV+ +++SP +L +P +I+ + G Q
Sbjct: 146 VG-LDEITVGIAGDLKYGRTVHSLAAALSNFDVRQHFISPESLQLPRNIRYDLHDSGSQ 203
>sp|Q3IPU8|PYRB_NATPD Aspartate carbamoyltransferase OS=Natronomonas pharaonis (strain
DSM 2160 / ATCC 35678) GN=pyrB PE=3 SV=1
Length = 300
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 31/119 (26%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAVK-------------------------------EE 34
+L DTV V+ GY D IVLRHP G+ K E
Sbjct: 85 SLADTVRVIEGYTDAIVLRHPSEGSPKLASEFVDVPVINAGDGAGQHPTQTLLDMYTIRE 144
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
++ LTI ++GDLK GRTVHSLA LT +DV +++SP +L +P S++ + G Q
Sbjct: 145 NAGLDDLTIGIMGDLKYGRTVHSLAHALTNFDVSQHFISPESLQLPRSVRYDLHESGAQ 203
>sp|A0B8L1|PYRB_METTP Aspartate carbamoyltransferase OS=Methanosaeta thermophila (strain
DSM 6194 / PT) GN=pyrB PE=3 SV=1
Length = 304
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 31/109 (28%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGAVK-------------------------------EE 34
+L DT+ V+ GYAD IV+RHP+ G+ + ++
Sbjct: 87 SLADTIRVVGGYADAIVIRHPKEGSARLAAEFSPVPVLNAGDGAGHHPTQTLLDLYTIKK 146
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESI 83
++ L+I +VGDLK GRTVHSLA L+LY + VSPP L MPE I
Sbjct: 147 ESHLDDLSIALVGDLKYGRTVHSLAYALSLYGADIYLVSPPTLRMPEQI 195
>sp|A4G0R3|PYRB_METM5 Aspartate carbamoyltransferase OS=Methanococcus maripaludis (strain
C5 / ATCC BAA-1333) GN=pyrB PE=3 SV=1
Length = 302
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 33/124 (26%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
+L DT+ V+SGY+D+I +RHP GA +K
Sbjct: 85 SLADTIKVISGYSDLIAIRHPSEGAARLSGENSKVPVINAGDGSNQHPTQTLLDLYTIKR 144
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGK 92
E+G + L I +GDLK GRTVHSL + L+L+ V++ +SP L MP + E + K K
Sbjct: 145 EVGHIENLKIAFIGDLKYGRTVHSLCQALSLFKGVEIKLISPEELKMPREVIEDIDGKIK 204
Query: 93 QQEV 96
E+
Sbjct: 205 LSEM 208
>sp|Q8THL2|PYRB_METAC Aspartate carbamoyltransferase OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=pyrB
PE=3 SV=1
Length = 308
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 56/114 (49%), Gaps = 31/114 (27%)
Query: 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVK--EEMGRV---NG--------------- 40
+M NL DT+ V+S YAD+IVLRHP G+ + E V NG
Sbjct: 84 VMKGENLADTIRVISKYADLIVLRHPLDGSARMAAEFASVPVINGGDGSVHHPTQTFLDL 143
Query: 41 -----------LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESI 83
L I M GDLK GRTVHSL L+LY ++ +VSPP L MP I
Sbjct: 144 YTIRRESHLEDLRIAMAGDLKYGRTVHSLCHALSLYGAEMTFVSPPELRMPPEI 197
>sp|B7LMR8|PYRB_ESCF3 Aspartate carbamoyltransferase OS=Escherichia fergusonii (strain
ATCC 35469 / DSM 13698 / CDC 0568-73) GN=pyrB PE=3 SV=1
Length = 311
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 34/119 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGA---------------------------------VKE 33
L DT++V+S Y D IV+RHP+ GA ++E
Sbjct: 89 LADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
GR++ L I MVGDLK GRTVHSL + L +D + +++P L MP+ I + + KG
Sbjct: 149 TQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG 207
>sp|C4LBX2|PYRB_TOLAT Aspartate carbamoyltransferase OS=Tolumonas auensis (strain DSM
9187 / TA4) GN=pyrB PE=3 SV=1
Length = 307
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 32/117 (27%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVK--------------------------------EE 34
L D+V V++ Y D V+RHP+ GA + E
Sbjct: 89 LADSVRVITSYTDAFVIRHPQEGAARLSAEFSSVPVINAGDGSNQHPTQTLLDLFSIYET 148
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
G ++GL + VGDLK GRTVHSLA+ L+L+ + ++SP L MP+ I E + KG
Sbjct: 149 QGTLDGLKLAFVGDLKYGRTVHSLAQALSLFGARFYFISPEALAMPDYICEELTEKG 205
>sp|Q8F812|PYRB_LEPIN Aspartate carbamoyltransferase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=pyrB
PE=3 SV=2
Length = 308
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 32/112 (28%)
Query: 6 NLIDTVAVLSGYADVIVLRHP-------EPGAVK-------------------------E 33
L DT+ ++ YAD+ V+RHP GAVK
Sbjct: 89 TLYDTMKMVEAYADIAVIRHPVEGSSRIAAGAVKIPVINAGDGAGQHPTQAILDLYTIIS 148
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQE 85
E G ++GLT+ +GDLK GRT+HSL LL Y V+L +SPP L +PES ++
Sbjct: 149 EKGTLDGLTVAFIGDLKYGRTIHSLINLLRHYKVRLFLISPPELALPESYKK 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,260,321
Number of Sequences: 539616
Number of extensions: 1334289
Number of successful extensions: 4276
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 3474
Number of HSP's gapped (non-prelim): 896
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)