Query psy4411
Match_columns 99
No_of_seqs 116 out of 1039
Neff 6.7
Searched_HMMs 46136
Date Sat Aug 17 00:51:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0078 ArgF Ornithine carbamo 100.0 4.1E-31 8.9E-36 199.8 12.0 96 1-98 83-213 (310)
2 TIGR00670 asp_carb_tr aspartat 100.0 5.4E-29 1.2E-33 188.8 13.1 98 1-98 79-208 (301)
3 PLN02527 aspartate carbamoyltr 100.0 2.3E-28 5E-33 185.6 13.1 98 1-98 80-210 (306)
4 PRK14805 ornithine carbamoyltr 99.9 2.9E-27 6.2E-32 179.4 12.6 96 1-98 77-207 (302)
5 PLN02342 ornithine carbamoyltr 99.9 5.5E-27 1.2E-31 180.8 12.6 96 1-98 124-251 (348)
6 PRK08192 aspartate carbamoyltr 99.9 6.8E-27 1.5E-31 179.7 12.9 98 1-98 84-218 (338)
7 PRK04284 ornithine carbamoyltr 99.9 1E-26 2.3E-31 178.3 12.7 97 1-98 84-216 (332)
8 KOG1504|consensus 99.9 8.5E-28 1.8E-32 179.4 6.3 95 1-97 119-249 (346)
9 PRK11891 aspartate carbamoyltr 99.9 1.3E-26 2.8E-31 182.6 13.0 98 1-98 166-300 (429)
10 PRK02102 ornithine carbamoyltr 99.9 1.9E-26 4.1E-31 176.9 12.9 97 1-98 85-216 (331)
11 PRK01713 ornithine carbamoyltr 99.9 2E-26 4.4E-31 176.8 12.6 97 1-98 85-217 (334)
12 PRK03515 ornithine carbamoyltr 99.9 2.7E-26 5.9E-31 176.3 12.7 97 1-98 84-217 (336)
13 PRK12562 ornithine carbamoyltr 99.9 7.6E-26 1.7E-30 173.7 12.9 97 1-98 84-217 (334)
14 TIGR00658 orni_carb_tr ornithi 99.9 9.3E-26 2E-30 171.1 12.7 96 1-98 78-208 (304)
15 PRK00779 ornithine carbamoyltr 99.9 1.3E-25 2.8E-30 170.4 12.7 96 1-98 82-209 (304)
16 PRK02255 putrescine carbamoylt 99.9 1.2E-25 2.6E-30 172.8 12.7 96 1-98 81-214 (338)
17 PRK13376 pyrB bifunctional asp 99.9 3.7E-25 8.1E-30 177.8 12.7 98 1-98 90-233 (525)
18 COG0540 PyrB Aspartate carbamo 99.9 7.6E-25 1.6E-29 166.2 11.2 96 2-97 86-215 (316)
19 PRK00856 pyrB aspartate carbam 99.9 5.8E-25 1.3E-29 167.0 10.1 81 1-81 84-197 (305)
20 PRK04523 N-acetylornithine car 99.9 3.7E-24 7.9E-29 164.4 12.7 97 2-98 90-236 (335)
21 PRK13814 pyrB aspartate carbam 99.9 1.5E-24 3.3E-29 165.1 10.0 82 1-82 84-200 (310)
22 PRK07200 aspartate/ornithine c 99.9 2.3E-23 5E-28 162.9 12.4 98 1-98 98-254 (395)
23 TIGR03316 ygeW probable carbam 99.9 7.5E-23 1.6E-27 158.3 12.7 98 1-98 81-237 (357)
24 PRK14804 ornithine carbamoyltr 99.9 2.1E-21 4.5E-26 147.9 11.1 91 5-98 85-210 (311)
25 PF00185 OTCace: Aspartate/orn 99.5 1.4E-13 3.1E-18 95.8 6.3 59 39-98 1-65 (158)
26 PF02729 OTCace_N: Aspartate/o 99.0 8.9E-10 1.9E-14 75.8 5.4 62 1-64 78-139 (142)
27 PF13241 NAD_binding_7: Putati 94.5 0.044 9.6E-07 35.1 3.1 37 37-76 4-40 (103)
28 TIGR01470 cysG_Nterm siroheme 94.5 0.21 4.5E-06 36.0 6.7 46 37-88 6-51 (205)
29 PRK06718 precorrin-2 dehydroge 93.8 0.32 7E-06 34.9 6.7 47 37-89 7-53 (202)
30 PRK05562 precorrin-2 dehydroge 93.8 0.35 7.5E-06 35.7 6.9 46 37-88 22-67 (223)
31 PF00070 Pyr_redox: Pyridine n 93.1 0.46 1E-05 28.5 5.6 52 42-96 1-59 (80)
32 PF01861 DUF43: Protein of unk 93.0 0.63 1.4E-05 34.9 7.2 56 33-97 38-97 (243)
33 cd00640 Trp-synth-beta_II Tryp 92.9 0.95 2.1E-05 32.6 7.9 58 36-98 46-103 (244)
34 TIGR01316 gltA glutamate synth 92.8 0.66 1.4E-05 36.8 7.5 56 38-96 270-328 (449)
35 PRK06719 precorrin-2 dehydroge 92.8 0.26 5.7E-06 34.0 4.6 36 37-75 10-45 (157)
36 PRK10717 cysteine synthase A; 92.5 0.49 1.1E-05 36.0 6.2 46 51-98 72-117 (330)
37 TIGR01139 cysK cysteine syntha 92.4 1 2.2E-05 33.7 7.8 55 39-98 56-110 (298)
38 COG1648 CysG Siroheme synthase 92.4 0.61 1.3E-05 34.0 6.4 49 37-91 9-57 (210)
39 PRK12831 putative oxidoreducta 92.4 0.81 1.8E-05 36.6 7.6 56 38-96 279-337 (464)
40 PRK11761 cysM cysteine synthas 92.3 0.98 2.1E-05 34.1 7.6 55 39-98 62-116 (296)
41 PF02882 THF_DHG_CYH_C: Tetrah 92.0 0.93 2E-05 31.7 6.7 43 32-76 27-70 (160)
42 PRK14191 bifunctional 5,10-met 91.9 2 4.3E-05 32.9 8.9 41 32-74 148-189 (285)
43 PLN00011 cysteine synthase 91.9 0.66 1.4E-05 35.4 6.3 47 50-98 76-122 (323)
44 PRK14189 bifunctional 5,10-met 91.6 1.4 3E-05 33.7 7.7 43 32-76 149-192 (285)
45 cd01561 CBS_like CBS_like: Thi 91.6 0.78 1.7E-05 34.1 6.3 47 50-98 60-106 (291)
46 COG0492 TrxB Thioredoxin reduc 91.5 1.1 2.4E-05 34.3 7.2 51 37-90 140-191 (305)
47 TIGR01138 cysM cysteine syntha 91.5 1.5 3.3E-05 32.9 7.8 54 40-98 59-112 (290)
48 cd06448 L-Ser-dehyd Serine deh 91.4 1.3 2.8E-05 33.8 7.4 54 40-98 51-104 (316)
49 PRK14170 bifunctional 5,10-met 91.4 1.7 3.7E-05 33.2 8.0 44 32-77 148-192 (284)
50 cd01563 Thr-synth_1 Threonine 91.2 0.72 1.6E-05 34.8 5.8 46 51-98 78-123 (324)
51 PRK10637 cysG siroheme synthas 91.2 0.94 2E-05 36.3 6.8 46 37-88 9-54 (457)
52 cd01562 Thr-dehyd Threonine de 91.2 0.8 1.7E-05 34.0 6.0 53 41-98 66-118 (304)
53 PRK14169 bifunctional 5,10-met 91.1 2 4.4E-05 32.8 8.1 44 32-77 147-191 (282)
54 PRK14182 bifunctional 5,10-met 90.8 2.2 4.7E-05 32.6 8.1 44 32-77 148-192 (282)
55 PRK14172 bifunctional 5,10-met 90.8 2.2 4.7E-05 32.5 8.1 44 32-77 149-193 (278)
56 PRK05476 S-adenosyl-L-homocyst 90.8 1.5 3.2E-05 35.3 7.5 57 36-94 44-100 (425)
57 PLN02565 cysteine synthase 90.7 1 2.2E-05 34.5 6.4 44 53-98 77-120 (322)
58 PRK14194 bifunctional 5,10-met 90.7 1.6 3.6E-05 33.6 7.4 41 32-74 150-191 (301)
59 PRK14175 bifunctional 5,10-met 90.6 1.6 3.5E-05 33.3 7.2 43 32-76 149-192 (286)
60 PRK08246 threonine dehydratase 90.4 0.98 2.1E-05 34.3 5.9 45 52-98 77-121 (310)
61 cd05212 NAD_bind_m-THF_DH_Cycl 90.3 1.4 3.1E-05 30.1 6.1 43 32-76 19-62 (140)
62 PF02826 2-Hacid_dh_C: D-isome 90.3 0.65 1.4E-05 32.3 4.5 37 37-76 33-69 (178)
63 PRK14173 bifunctional 5,10-met 90.2 2.5 5.5E-05 32.3 8.0 44 32-77 146-190 (287)
64 TIGR01137 cysta_beta cystathio 90.2 1.8 3.9E-05 34.1 7.4 53 40-97 62-114 (454)
65 TIGR01136 cysKM cysteine synth 90.1 2.3 5E-05 31.8 7.7 44 52-97 67-110 (299)
66 PF01488 Shikimate_DH: Shikima 90.0 0.6 1.3E-05 31.1 4.0 40 32-74 4-44 (135)
67 PRK14186 bifunctional 5,10-met 89.5 3.2 6.9E-05 32.0 8.1 44 32-77 149-193 (297)
68 PRK07476 eutB threonine dehydr 89.3 1.4 3.1E-05 33.4 6.1 46 51-98 75-120 (322)
69 PRK14183 bifunctional 5,10-met 89.2 3.2 7E-05 31.7 7.9 43 32-76 148-191 (281)
70 PRK14167 bifunctional 5,10-met 89.2 3.2 6.9E-05 32.0 7.9 43 32-76 148-195 (297)
71 PRK14176 bifunctional 5,10-met 89.1 3.2 6.9E-05 31.8 7.8 43 32-76 155-198 (287)
72 PRK14178 bifunctional 5,10-met 89.1 3.7 8E-05 31.3 8.1 43 32-76 143-186 (279)
73 TIGR01275 ACC_deam_rel pyridox 89.0 1.7 3.6E-05 32.7 6.2 47 50-97 65-111 (311)
74 PRK14181 bifunctional 5,10-met 88.9 3.8 8.2E-05 31.4 8.1 43 32-76 144-191 (287)
75 PF00291 PALP: Pyridoxal-phosp 88.8 1 2.2E-05 33.1 4.9 44 52-97 65-108 (306)
76 PRK08198 threonine dehydratase 88.8 2.6 5.7E-05 32.9 7.4 53 40-97 70-122 (404)
77 PLN02556 cysteine synthase/L-3 88.8 1.5 3.3E-05 34.3 6.0 47 50-98 118-164 (368)
78 PRK06815 hypothetical protein; 88.7 1.6 3.5E-05 33.1 6.0 46 51-98 76-121 (317)
79 PRK14179 bifunctional 5,10-met 88.5 3.5 7.5E-05 31.5 7.6 42 32-75 149-191 (284)
80 PRK14190 bifunctional 5,10-met 88.5 3.2 7E-05 31.7 7.4 43 32-76 149-192 (284)
81 cd00401 AdoHcyase S-adenosyl-L 88.5 2.6 5.7E-05 33.7 7.2 57 36-94 32-88 (413)
82 PRK06352 threonine synthase; V 88.4 1.6 3.4E-05 33.8 5.9 46 51-97 83-128 (351)
83 PRK14177 bifunctional 5,10-met 88.4 4.1 8.9E-05 31.2 8.0 44 32-77 150-194 (284)
84 cd01076 NAD_bind_1_Glu_DH NAD( 88.4 2.2 4.7E-05 31.2 6.3 35 36-73 27-61 (227)
85 TIGR01127 ilvA_1Cterm threonin 88.3 1.7 3.8E-05 33.6 6.0 51 42-97 50-100 (380)
86 PRK07048 serine/threonine dehy 88.3 1.7 3.8E-05 32.9 5.9 45 52-98 81-125 (321)
87 TIGR00465 ilvC ketol-acid redu 88.2 1.8 3.9E-05 33.2 6.0 35 38-75 1-35 (314)
88 PRK10792 bifunctional 5,10-met 88.2 3.8 8.3E-05 31.3 7.7 43 32-76 150-193 (285)
89 PLN02970 serine racemase 88.1 1.8 3.8E-05 33.1 5.9 46 51-98 83-128 (328)
90 PLN02516 methylenetetrahydrofo 88.0 4.4 9.5E-05 31.2 7.9 43 32-76 158-201 (299)
91 TIGR01292 TRX_reduct thioredox 88.0 3 6.5E-05 30.0 6.8 55 38-95 139-195 (300)
92 PRK07409 threonine synthase; V 88.0 1.7 3.7E-05 33.4 5.8 48 50-98 85-132 (353)
93 PRK06381 threonine synthase; V 87.8 2.9 6.3E-05 31.5 6.9 46 51-98 71-116 (319)
94 TIGR02035 D_Ser_am_lyase D-ser 87.8 2.5 5.5E-05 33.9 6.8 45 52-98 161-205 (431)
95 cd06449 ACCD Aminocyclopropane 87.7 3 6.4E-05 31.4 6.8 49 50-98 61-115 (307)
96 PRK08936 glucose-1-dehydrogena 87.6 3.6 7.8E-05 29.4 7.0 38 36-75 3-40 (261)
97 PRK08329 threonine synthase; V 87.4 3.6 7.9E-05 31.7 7.3 52 41-97 105-156 (347)
98 PRK14168 bifunctional 5,10-met 87.4 4.6 9.9E-05 31.1 7.7 44 32-77 152-200 (297)
99 PRK06608 threonine dehydratase 87.3 2.1 4.6E-05 33.0 5.9 46 50-97 79-124 (338)
100 PRK14188 bifunctional 5,10-met 87.2 4.1 8.9E-05 31.3 7.3 40 32-73 149-189 (296)
101 PRK14185 bifunctional 5,10-met 87.2 5.2 0.00011 30.7 7.9 44 32-77 148-196 (293)
102 PRK07334 threonine dehydratase 87.2 2.1 4.5E-05 33.6 5.9 45 52-98 80-124 (403)
103 PRK14171 bifunctional 5,10-met 87.1 5.3 0.00011 30.6 7.9 43 33-77 151-194 (288)
104 PRK14166 bifunctional 5,10-met 87.1 5.7 0.00012 30.4 8.0 43 32-76 148-191 (282)
105 CHL00073 chlN photochlorophyll 87.0 2.2 4.7E-05 34.7 6.0 36 37-75 311-346 (457)
106 TIGR02991 ectoine_eutB ectoine 87.0 2.5 5.5E-05 32.2 6.2 47 50-98 74-120 (317)
107 PRK13243 glyoxylate reductase; 87.0 1.5 3.3E-05 33.7 5.0 36 37-75 147-182 (333)
108 PRK14184 bifunctional 5,10-met 86.9 4.1 8.8E-05 31.2 7.2 43 32-76 148-195 (286)
109 TIGR01747 diampropi_NH3ly diam 86.9 2.4 5.2E-05 33.3 6.1 45 52-98 103-147 (376)
110 PRK08638 threonine dehydratase 86.7 2.3 5.1E-05 32.7 5.9 44 52-97 84-127 (333)
111 PRK11749 dihydropyrimidine deh 86.7 4.3 9.3E-05 32.1 7.5 55 39-96 272-330 (457)
112 PRK00257 erythronate-4-phospha 86.5 1.6 3.4E-05 34.5 4.9 36 37-75 113-148 (381)
113 PRK08410 2-hydroxyacid dehydro 86.5 1.8 3.9E-05 33.0 5.1 36 37-75 142-177 (311)
114 PRK14187 bifunctional 5,10-met 86.5 6.2 0.00013 30.3 8.0 43 32-76 151-194 (294)
115 PRK06721 threonine synthase; R 86.3 2.8 6.1E-05 32.4 6.1 47 51-98 83-129 (352)
116 PRK07591 threonine synthase; V 86.3 3.5 7.6E-05 32.7 6.8 47 50-98 144-190 (421)
117 PLN02356 phosphateglycerate ki 86.2 2.4 5.2E-05 34.1 5.8 46 50-97 111-156 (423)
118 PRK05638 threonine synthase; V 86.2 2.3 5E-05 33.9 5.7 46 50-97 119-164 (442)
119 PRK06110 hypothetical protein; 85.9 3 6.4E-05 31.7 6.0 45 51-97 78-122 (322)
120 PRK06450 threonine synthase; V 85.9 2.8 6E-05 32.4 5.9 44 52-97 106-149 (338)
121 cd06447 D-Ser-dehyd D-Serine d 85.8 2.8 6E-05 33.4 6.0 45 51-97 142-186 (404)
122 PRK08197 threonine synthase; V 85.8 2.8 6E-05 32.9 5.9 44 52-97 136-179 (394)
123 PLN03013 cysteine synthase 85.8 2.8 6.1E-05 33.8 6.0 45 52-98 184-228 (429)
124 PRK14193 bifunctional 5,10-met 85.7 7.5 0.00016 29.7 8.1 43 32-76 149-194 (284)
125 PRK05479 ketol-acid reductoiso 85.5 2.7 5.9E-05 32.7 5.7 37 36-75 13-49 (330)
126 PRK06382 threonine dehydratase 85.5 2.5 5.5E-05 33.2 5.6 44 52-97 82-125 (406)
127 PRK15438 erythronate-4-phospha 85.4 2 4.3E-05 34.0 5.0 36 37-75 113-148 (378)
128 PRK12779 putative bifunctional 85.3 4.2 9.2E-05 35.7 7.3 56 38-96 445-503 (944)
129 PRK14030 glutamate dehydrogena 85.3 3.2 6.9E-05 33.7 6.2 45 33-80 220-273 (445)
130 COG2044 Predicted peroxiredoxi 85.2 3.2 7E-05 28.0 5.2 54 46-99 11-83 (120)
131 TIGR03528 2_3_DAP_am_ly diamin 85.1 2.9 6.3E-05 33.1 5.8 44 52-97 122-165 (396)
132 TIGR00936 ahcY adenosylhomocys 84.9 5.5 0.00012 31.9 7.3 57 36-94 28-84 (406)
133 PRK08206 diaminopropionate amm 84.9 3.2 7E-05 32.7 6.0 46 50-97 123-168 (399)
134 PRK08526 threonine dehydratase 84.9 3.2 6.8E-05 32.9 5.9 46 50-97 75-120 (403)
135 cd05211 NAD_bind_Glu_Leu_Phe_V 84.8 4.5 9.9E-05 29.4 6.3 36 36-74 19-54 (217)
136 PRK02991 D-serine dehydratase; 84.7 3.4 7.4E-05 33.3 6.1 44 52-97 166-209 (441)
137 PRK12778 putative bifunctional 84.6 4.3 9.3E-05 34.4 6.9 55 38-95 568-626 (752)
138 TIGR01274 ACC_deam 1-aminocycl 84.6 5.5 0.00012 30.4 7.0 48 50-97 75-128 (337)
139 PRK08813 threonine dehydratase 84.4 3.7 8E-05 32.1 6.0 45 51-97 89-133 (349)
140 PRK01438 murD UDP-N-acetylmura 84.4 5 0.00011 31.8 6.9 56 37-95 13-68 (480)
141 PRK12480 D-lactate dehydrogena 84.3 2.3 5E-05 32.7 4.8 36 37-75 143-178 (330)
142 PRK06436 glycerate dehydrogena 84.3 2.5 5.5E-05 32.2 5.0 36 37-75 119-154 (303)
143 TIGR01279 DPOR_bchN light-inde 84.3 6.8 0.00015 30.9 7.5 37 36-75 270-306 (407)
144 PLN02629 powdery mildew resist 84.1 0.98 2.1E-05 36.0 2.7 30 35-64 115-144 (387)
145 PRK06260 threonine synthase; V 84.0 3.5 7.5E-05 32.3 5.8 47 50-97 122-168 (397)
146 PRK12390 1-aminocyclopropane-1 83.7 6.6 0.00014 30.0 7.1 49 50-98 76-130 (337)
147 cd01079 NAD_bind_m-THF_DH NAD 83.7 3.1 6.7E-05 30.3 5.0 34 37-72 59-92 (197)
148 TIGR01832 kduD 2-deoxy-D-gluco 83.4 11 0.00023 26.5 7.7 37 37-75 2-38 (248)
149 PRK12769 putative oxidoreducta 83.4 7 0.00015 32.5 7.6 56 38-96 466-525 (654)
150 PRK02842 light-independent pro 83.1 7.6 0.00017 30.8 7.4 36 36-74 286-322 (427)
151 PRK14106 murD UDP-N-acetylmura 83.0 4.8 0.0001 31.5 6.2 55 37-94 2-56 (450)
152 PRK12391 tryptophan synthase s 82.9 3.9 8.5E-05 32.8 5.7 46 52-97 136-182 (427)
153 TIGR01415 trpB_rel pyridoxal-p 82.8 4 8.8E-05 32.6 5.8 45 53-97 128-173 (419)
154 PRK14180 bifunctional 5,10-met 82.8 5.5 0.00012 30.4 6.2 43 32-76 149-192 (282)
155 PRK07792 fabG 3-ketoacyl-(acyl 82.7 9.9 0.00022 28.2 7.6 58 36-95 8-65 (306)
156 PLN02928 oxidoreductase family 82.7 3.1 6.7E-05 32.2 5.0 36 37-75 156-191 (347)
157 PRK06487 glycerate dehydrogena 82.7 3.2 7E-05 31.7 5.0 36 37-75 145-180 (317)
158 PRK11790 D-3-phosphoglycerate 82.5 3.3 7.2E-05 32.8 5.2 36 37-75 148-183 (409)
159 PLN02616 tetrahydrofolate dehy 82.5 5 0.00011 31.8 6.0 44 32-77 222-266 (364)
160 cd01979 Pchlide_reductase_N Pc 82.3 3.1 6.7E-05 32.6 4.9 36 36-74 272-307 (396)
161 PRK09224 threonine dehydratase 82.3 4.8 0.0001 32.8 6.1 44 52-97 77-120 (504)
162 PF06506 PrpR_N: Propionate ca 82.2 1.6 3.5E-05 30.4 2.9 76 15-94 32-128 (176)
163 TIGR00260 thrC threonine synth 82.2 7.2 0.00016 29.4 6.7 47 51-98 79-125 (328)
164 PRK08628 short chain dehydroge 82.1 10 0.00023 26.8 7.3 37 37-75 4-40 (258)
165 TIGR01124 ilvA_2Cterm threonin 81.6 4.9 0.00011 32.8 5.9 45 51-97 73-117 (499)
166 PLN02569 threonine synthase 81.5 6.2 0.00013 32.2 6.5 47 50-97 194-240 (484)
167 TIGR00263 trpB tryptophan synt 81.1 4.6 0.0001 31.7 5.5 46 53-98 109-155 (385)
168 PRK06932 glycerate dehydrogena 81.0 3.8 8.3E-05 31.3 4.9 36 37-75 144-179 (314)
169 PRK08589 short chain dehydroge 80.9 9.9 0.00022 27.5 6.9 55 36-94 2-56 (272)
170 PLN02477 glutamate dehydrogena 80.9 6.6 0.00014 31.5 6.3 38 33-73 198-236 (410)
171 PRK12814 putative NADPH-depend 80.9 9.1 0.0002 32.0 7.4 56 38-96 321-380 (652)
172 PLN03139 formate dehydrogenase 80.8 3.3 7.1E-05 32.9 4.5 36 37-75 196-231 (386)
173 TIGR01327 PGDH D-3-phosphoglyc 80.7 3.7 8.1E-05 33.5 5.0 35 37-74 135-169 (525)
174 PRK12810 gltD glutamate syntha 80.7 9 0.0002 30.5 7.1 56 38-96 279-348 (471)
175 PRK06935 2-deoxy-D-gluconate 3 80.7 13 0.00028 26.4 7.3 37 37-75 12-48 (258)
176 PRK06701 short chain dehydroge 80.5 13 0.00027 27.4 7.4 39 35-75 41-79 (290)
177 PRK03910 D-cysteine desulfhydr 80.5 4.5 9.7E-05 30.8 5.1 48 51-98 74-127 (331)
178 PRK09414 glutamate dehydrogena 80.4 5.8 0.00013 32.1 5.9 38 33-73 224-262 (445)
179 PF02729 OTCace_N: Aspartate/o 80.1 6.4 0.00014 26.8 5.3 44 36-79 35-78 (142)
180 PRK14192 bifunctional 5,10-met 80.0 3.3 7.2E-05 31.4 4.2 42 32-75 150-192 (283)
181 cd05313 NAD_bind_2_Glu_DH NAD( 80.0 4 8.7E-05 30.7 4.6 35 36-73 34-68 (254)
182 PRK13581 D-3-phosphoglycerate 79.8 4 8.7E-05 33.4 4.9 35 37-74 137-171 (526)
183 PRK15469 ghrA bifunctional gly 79.7 4.2 9.1E-05 31.1 4.7 35 37-74 133-167 (312)
184 PLN02550 threonine dehydratase 79.4 6.2 0.00013 33.1 5.9 46 50-97 164-209 (591)
185 PRK15409 bifunctional glyoxyla 79.3 4.5 9.8E-05 31.1 4.8 36 37-75 142-178 (323)
186 PRK12483 threonine dehydratase 79.2 6.6 0.00014 32.3 6.0 44 52-97 94-137 (521)
187 PRK08306 dipicolinate synthase 79.2 11 0.00023 28.5 6.8 37 36-75 148-184 (296)
188 PRK12771 putative glutamate sy 79.2 12 0.00026 30.5 7.5 57 37-96 134-206 (564)
189 PRK13982 bifunctional SbtC-lik 79.1 4.9 0.00011 32.9 5.1 44 37-80 253-311 (475)
190 COG0111 SerA Phosphoglycerate 79.1 4.6 9.9E-05 31.2 4.8 35 37-74 139-173 (324)
191 PF05221 AdoHcyase: S-adenosyl 79.0 8.5 0.00018 29.3 6.1 57 36-94 39-95 (268)
192 TIGR01278 DPOR_BchB light-inde 78.9 6.6 0.00014 31.9 5.9 35 38-75 293-328 (511)
193 PRK06114 short chain dehydroge 78.8 16 0.00034 26.0 7.3 37 37-75 5-41 (254)
194 PRK12937 short chain dehydroge 78.7 13 0.00028 25.9 6.7 35 37-73 2-36 (245)
195 COG0394 Wzb Protein-tyrosine-p 78.4 8.9 0.00019 26.0 5.6 55 41-95 3-62 (139)
196 PRK14031 glutamate dehydrogena 78.4 4.4 9.6E-05 32.8 4.7 39 33-74 220-259 (444)
197 TIGR02853 spore_dpaA dipicolin 78.3 4.8 0.0001 30.4 4.6 40 33-75 143-183 (287)
198 PF03853 YjeF_N: YjeF-related 78.1 9.5 0.00021 26.4 5.8 55 40-95 26-85 (169)
199 PRK14045 1-aminocyclopropane-1 77.9 9 0.00019 29.2 6.1 54 42-97 72-125 (329)
200 PRK08639 threonine dehydratase 77.9 7 0.00015 30.9 5.6 41 52-94 82-122 (420)
201 COG0031 CysK Cysteine synthase 77.9 19 0.00042 27.8 7.8 62 32-98 53-115 (300)
202 PRK07574 formate dehydrogenase 77.7 5.2 0.00011 31.7 4.8 36 37-75 189-224 (385)
203 cd01075 NAD_bind_Leu_Phe_Val_D 77.6 6 0.00013 28.2 4.8 35 36-73 24-58 (200)
204 PRK13530 arsenate reductase; P 77.5 8.2 0.00018 25.7 5.2 56 40-95 3-60 (133)
205 PRK09754 phenylpropionate diox 77.5 13 0.00027 28.8 6.9 55 39-96 143-205 (396)
206 PRK06116 glutathione reductase 77.5 5.8 0.00013 31.1 5.1 53 40-95 167-226 (450)
207 COG0190 FolD 5,10-methylene-te 77.4 7.2 0.00016 29.9 5.3 43 32-76 147-190 (283)
208 PF02737 3HCDH_N: 3-hydroxyacy 77.2 9.7 0.00021 26.6 5.7 31 42-75 1-31 (180)
209 PRK13512 coenzyme A disulfide 77.1 13 0.00029 29.2 7.0 54 39-95 147-207 (438)
210 PLN02897 tetrahydrofolate dehy 77.1 8.9 0.00019 30.2 5.9 43 32-76 205-248 (345)
211 PRK08063 enoyl-(acyl carrier p 76.9 16 0.00034 25.6 6.8 33 38-72 2-34 (250)
212 TIGR02079 THD1 threonine dehyd 76.7 8.3 0.00018 30.5 5.7 40 52-93 73-112 (409)
213 PRK12770 putative glutamate sy 76.7 16 0.00036 27.6 7.2 55 38-95 170-228 (352)
214 PRK02910 light-independent pro 76.6 13 0.00028 30.4 6.9 35 37-74 290-325 (519)
215 PRK12809 putative oxidoreducta 76.4 16 0.00035 30.4 7.5 56 38-96 449-508 (639)
216 PRK14174 bifunctional 5,10-met 76.1 9.3 0.0002 29.3 5.6 44 32-77 150-198 (295)
217 PRK08862 short chain dehydroge 76.0 16 0.00034 26.0 6.6 36 37-74 2-37 (227)
218 PRK05249 soluble pyridine nucl 75.9 15 0.00032 28.8 6.9 53 40-95 175-234 (461)
219 TIGR01318 gltD_gamma_fam gluta 75.8 18 0.00039 28.9 7.5 56 38-96 280-339 (467)
220 PRK10262 thioredoxin reductase 75.8 14 0.00031 27.4 6.6 54 38-94 144-202 (321)
221 PRK06370 mercuric reductase; V 75.6 13 0.00028 29.3 6.6 53 40-95 171-230 (463)
222 PRK07251 pyridine nucleotide-d 75.4 15 0.00032 28.8 6.8 53 40-95 157-216 (438)
223 COG4087 Soluble P-type ATPase 75.4 8.5 0.00018 26.8 4.8 65 5-76 33-123 (152)
224 PF13380 CoA_binding_2: CoA bi 75.2 11 0.00023 24.6 5.1 36 41-76 1-37 (116)
225 PRK12935 acetoacetyl-CoA reduc 75.1 19 0.0004 25.2 6.7 55 38-94 4-58 (247)
226 PF01262 AlaDh_PNT_C: Alanine 75.1 5.2 0.00011 27.4 3.8 34 36-72 16-49 (168)
227 PRK13394 3-hydroxybutyrate deh 75.1 20 0.00043 25.2 6.9 38 36-75 3-40 (262)
228 PRK12825 fabG 3-ketoacyl-(acyl 74.9 18 0.0004 24.9 6.6 36 38-75 4-39 (249)
229 COG0334 GdhA Glutamate dehydro 74.8 7.3 0.00016 31.4 4.9 40 32-74 198-238 (411)
230 PRK09564 coenzyme A disulfide 74.7 17 0.00037 28.3 6.9 55 38-95 147-209 (444)
231 PRK05557 fabG 3-ketoacyl-(acyl 74.7 23 0.00049 24.4 7.0 34 38-73 3-36 (248)
232 COG1052 LdhA Lactate dehydroge 74.6 8.1 0.00018 29.9 5.0 37 37-76 143-179 (324)
233 PRK08010 pyridine nucleotide-d 74.5 18 0.0004 28.2 7.1 53 40-95 158-217 (441)
234 TIGR03143 AhpF_homolog putativ 74.5 14 0.0003 30.2 6.6 55 38-95 141-197 (555)
235 TIGR03385 CoA_CoA_reduc CoA-di 74.5 13 0.00028 28.9 6.2 55 38-95 135-197 (427)
236 cd01080 NAD_bind_m-THF_DH_Cycl 74.4 9 0.00019 26.8 4.9 42 32-75 36-77 (168)
237 PRK12743 oxidoreductase; Provi 74.4 19 0.00041 25.6 6.7 32 40-73 2-33 (256)
238 PRK11070 ssDNA exonuclease Rec 74.4 13 0.00029 31.0 6.6 59 38-96 67-132 (575)
239 PRK08416 7-alpha-hydroxysteroi 74.3 17 0.00036 26.0 6.4 37 36-74 4-40 (260)
240 PRK12829 short chain dehydroge 74.2 11 0.00025 26.5 5.5 40 32-73 3-42 (264)
241 PRK12828 short chain dehydroge 74.1 26 0.00056 24.1 7.2 36 37-74 4-39 (239)
242 PRK05565 fabG 3-ketoacyl-(acyl 74.1 23 0.00051 24.5 7.0 33 38-72 3-35 (247)
243 PRK06124 gluconate 5-dehydroge 73.6 18 0.0004 25.5 6.4 38 36-75 7-44 (256)
244 PRK05976 dihydrolipoamide dehy 73.6 16 0.00034 29.0 6.6 53 40-95 180-239 (472)
245 PRK12744 short chain dehydroge 73.0 23 0.0005 25.1 6.8 34 38-73 6-39 (257)
246 PF13477 Glyco_trans_4_2: Glyc 73.0 7.6 0.00016 24.8 4.0 34 42-76 1-34 (139)
247 PRK12769 putative oxidoreducta 72.7 20 0.00044 29.8 7.3 54 39-95 326-395 (654)
248 PRK04965 NADH:flavorubredoxin 72.7 21 0.00045 27.3 6.9 54 39-95 140-201 (377)
249 cd06446 Trp-synth_B Tryptophan 72.6 9.9 0.00022 29.5 5.2 46 52-98 92-139 (365)
250 PF13738 Pyr_redox_3: Pyridine 72.6 7.1 0.00015 26.6 4.0 37 37-76 164-200 (203)
251 PRK06128 oxidoreductase; Provi 72.4 25 0.00055 25.8 7.1 36 36-73 51-86 (300)
252 cd00401 AdoHcyase S-adenosyl-L 72.2 13 0.00029 29.7 5.9 34 38-74 200-233 (413)
253 PRK12809 putative oxidoreducta 71.7 22 0.00048 29.6 7.3 55 39-96 309-379 (639)
254 PTZ00075 Adenosylhomocysteinas 71.5 22 0.00048 29.2 7.1 54 36-91 41-94 (476)
255 PRK01710 murD UDP-N-acetylmura 71.3 29 0.00062 27.6 7.6 55 37-94 11-65 (458)
256 PRK12481 2-deoxy-D-gluconate 3 71.1 34 0.00075 24.3 7.7 36 37-74 5-40 (251)
257 TIGR02689 ars_reduc_gluta arse 71.0 12 0.00026 24.5 4.6 52 41-95 1-57 (126)
258 PRK14694 putative mercuric red 71.0 24 0.00052 28.0 7.1 53 40-95 178-236 (468)
259 PRK06416 dihydrolipoamide dehy 70.9 20 0.00044 28.1 6.6 53 40-95 172-231 (462)
260 PRK12775 putative trifunctiona 70.8 22 0.00047 31.6 7.3 56 38-96 569-628 (1006)
261 PRK08605 D-lactate dehydrogena 70.8 9.5 0.00021 29.3 4.6 36 37-75 143-179 (332)
262 PRK13028 tryptophan synthase s 70.2 14 0.0003 29.5 5.5 49 46-98 117-167 (402)
263 PRK07985 oxidoreductase; Provi 70.2 37 0.0008 25.0 7.6 38 35-74 44-81 (294)
264 PLN02256 arogenate dehydrogena 70.2 11 0.00025 28.6 4.9 41 32-75 28-68 (304)
265 COG0219 CspR Predicted rRNA me 70.1 7.3 0.00016 27.4 3.5 29 58-86 19-47 (155)
266 PLN02494 adenosylhomocysteinas 70.0 24 0.00052 29.0 6.9 57 36-94 42-98 (477)
267 PRK13748 putative mercuric red 69.9 22 0.00048 28.7 6.8 53 40-95 270-328 (561)
268 PRK06912 acoL dihydrolipoamide 69.8 21 0.00045 28.2 6.5 54 40-96 170-230 (458)
269 PRK13403 ketol-acid reductoiso 69.5 8.2 0.00018 30.3 4.0 36 36-74 12-47 (335)
270 PRK06115 dihydrolipoamide dehy 69.4 28 0.0006 27.7 7.1 54 39-95 173-233 (466)
271 PRK07035 short chain dehydroge 69.4 27 0.00058 24.6 6.5 36 37-74 5-40 (252)
272 PRK12939 short chain dehydroge 69.4 30 0.00065 24.0 6.7 35 37-73 4-38 (250)
273 PRK12823 benD 1,6-dihydroxycyc 69.3 37 0.0008 23.9 7.4 37 36-74 4-40 (260)
274 TIGR01424 gluta_reduc_2 glutat 69.2 22 0.00047 28.0 6.4 53 40-95 166-225 (446)
275 COG0623 FabI Enoyl-[acyl-carri 69.2 20 0.00044 27.2 5.9 57 36-93 2-58 (259)
276 TIGR01318 gltD_gamma_fam gluta 69.2 26 0.00056 28.0 6.9 55 39-96 140-210 (467)
277 PRK07523 gluconate 5-dehydroge 69.1 27 0.00059 24.6 6.5 36 37-74 7-42 (255)
278 PRK08993 2-deoxy-D-gluconate 3 69.0 38 0.00083 24.0 8.1 36 37-74 7-42 (253)
279 COG0493 GltD NADPH-dependent g 68.9 26 0.00057 28.4 6.9 59 36-97 119-193 (457)
280 PRK06327 dihydrolipoamide dehy 68.7 26 0.00057 27.8 6.9 53 40-95 183-242 (475)
281 PRK15317 alkyl hydroperoxide r 68.5 22 0.00049 28.6 6.5 54 38-94 349-404 (517)
282 cd01968 Nitrogenase_NifE_I Nit 68.3 35 0.00076 26.7 7.4 37 36-75 283-319 (410)
283 PF03807 F420_oxidored: NADP o 68.2 24 0.00052 21.3 5.7 29 42-73 1-32 (96)
284 PLN02306 hydroxypyruvate reduc 68.2 12 0.00027 29.5 4.9 35 37-74 162-197 (386)
285 PRK07818 dihydrolipoamide dehy 68.1 28 0.00061 27.5 6.9 54 39-95 171-231 (466)
286 CHL00076 chlB photochlorophyll 68.1 28 0.00061 28.5 7.0 34 37-73 302-336 (513)
287 cd01974 Nitrogenase_MoFe_beta 68.0 20 0.00044 28.4 6.1 34 37-73 300-333 (435)
288 PF01451 LMWPc: Low molecular 68.0 21 0.00046 23.3 5.4 52 43-94 1-61 (138)
289 PF14266 DUF4356: Domain of un 68.0 9.6 0.00021 31.3 4.3 34 39-74 138-171 (488)
290 PRK12938 acetyacetyl-CoA reduc 67.8 39 0.00083 23.6 7.0 34 38-73 1-34 (246)
291 PRK06125 short chain dehydroge 67.8 23 0.0005 25.1 5.9 36 37-74 4-39 (259)
292 PRK12746 short chain dehydroge 67.5 34 0.00074 24.0 6.7 34 37-72 3-36 (254)
293 PF02844 GARS_N: Phosphoribosy 67.1 2.9 6.2E-05 27.2 0.9 39 54-93 50-88 (100)
294 PTZ00075 Adenosylhomocysteinas 66.8 13 0.00028 30.5 4.8 35 37-74 251-285 (476)
295 cd05191 NAD_bind_amino_acid_DH 66.7 25 0.00055 21.2 5.2 35 36-73 19-54 (86)
296 PRK12827 short chain dehydroge 66.6 32 0.0007 23.8 6.4 35 37-73 3-37 (249)
297 PRK07806 short chain dehydroge 66.6 41 0.0009 23.5 7.5 35 37-73 3-37 (248)
298 PRK07890 short chain dehydroge 66.4 31 0.00068 24.2 6.3 35 38-74 3-37 (258)
299 PF07991 IlvN: Acetohydroxy ac 66.3 24 0.00051 25.1 5.5 49 38-93 2-50 (165)
300 PRK08226 short chain dehydroge 66.3 43 0.00094 23.6 7.1 38 36-75 2-39 (263)
301 PRK14727 putative mercuric red 66.1 29 0.00063 27.6 6.7 53 40-95 188-246 (479)
302 PRK09853 putative selenate red 65.8 28 0.00061 31.2 7.0 55 38-95 537-607 (1019)
303 PRK09242 tropinone reductase; 65.7 33 0.00071 24.2 6.3 36 37-74 6-41 (257)
304 TIGR01284 alt_nitrog_alph nitr 65.7 12 0.00027 30.0 4.5 36 36-74 321-357 (457)
305 PLN02507 glutathione reductase 65.4 30 0.00065 27.9 6.7 53 40-95 203-262 (499)
306 PRK07845 flavoprotein disulfid 65.2 31 0.00067 27.4 6.6 53 40-95 177-236 (466)
307 PF01210 NAD_Gly3P_dh_N: NAD-d 65.0 18 0.0004 24.4 4.7 40 42-89 1-40 (157)
308 PTZ00058 glutathione reductase 65.0 30 0.00066 28.6 6.7 53 40-95 237-296 (561)
309 cd03557 L-arabinose_isomerase 64.9 17 0.00038 29.7 5.2 67 7-76 124-207 (484)
310 PRK06113 7-alpha-hydroxysteroi 64.8 40 0.00086 23.8 6.6 35 38-74 9-43 (255)
311 PRK09134 short chain dehydroge 64.6 43 0.00093 23.7 6.8 34 38-73 7-40 (258)
312 PRK04148 hypothetical protein; 64.5 40 0.00088 22.9 6.2 54 33-95 10-63 (134)
313 PLN02618 tryptophan synthase, 64.4 18 0.00039 29.0 5.1 52 42-97 122-175 (410)
314 PRK07097 gluconate 5-dehydroge 64.3 42 0.00091 23.9 6.7 36 37-74 7-42 (265)
315 PRK07774 short chain dehydroge 64.2 41 0.0009 23.4 6.6 36 37-74 3-38 (250)
316 PRK07478 short chain dehydroge 63.7 43 0.00094 23.6 6.6 36 37-74 3-38 (254)
317 TIGR01860 VNFD nitrogenase van 63.5 13 0.00027 30.0 4.2 36 36-74 323-359 (461)
318 PRK08277 D-mannonate oxidoredu 63.4 41 0.00089 24.1 6.6 36 37-74 7-42 (278)
319 PRK13984 putative oxidoreducta 63.2 34 0.00073 28.1 6.7 55 38-95 281-351 (604)
320 PRK09424 pntA NAD(P) transhydr 63.1 49 0.0011 27.3 7.5 49 38-94 163-211 (509)
321 PRK07814 short chain dehydroge 63.0 40 0.00086 24.0 6.4 36 37-74 7-42 (263)
322 PF04127 DFP: DNA / pantothena 62.9 17 0.00038 25.8 4.4 36 45-80 22-58 (185)
323 PF13478 XdhC_C: XdhC Rossmann 62.9 19 0.00041 24.3 4.4 30 44-76 2-31 (136)
324 TIGR02329 propionate_PrpR prop 62.6 38 0.00081 28.0 6.8 77 17-96 54-150 (526)
325 PRK12831 putative oxidoreducta 62.5 38 0.00083 27.0 6.7 56 38-96 138-210 (464)
326 PRK13265 glycine/sarcosine/bet 62.3 15 0.00032 25.7 3.7 39 37-77 3-42 (154)
327 PRK09853 putative selenate red 62.2 39 0.00085 30.3 7.2 54 39-95 667-725 (1019)
328 TIGR00936 ahcY adenosylhomocys 62.1 16 0.00034 29.3 4.4 34 37-73 192-225 (406)
329 PF10727 Rossmann-like: Rossma 61.9 12 0.00027 25.0 3.3 32 39-73 9-40 (127)
330 PRK15424 propionate catabolism 61.9 23 0.00051 29.3 5.5 77 17-96 64-160 (538)
331 PLN02546 glutathione reductase 61.8 37 0.00081 28.0 6.7 54 39-95 251-311 (558)
332 TIGR03452 mycothione_red mycot 61.8 26 0.00057 27.7 5.7 44 40-86 169-215 (452)
333 PRK12814 putative NADPH-depend 61.8 45 0.00097 28.0 7.2 55 39-96 192-262 (652)
334 PF00106 adh_short: short chai 61.8 21 0.00045 23.3 4.4 55 41-97 1-57 (167)
335 PLN02918 pyridoxine (pyridoxam 61.8 38 0.00082 28.3 6.7 54 41-94 137-192 (544)
336 TIGR01182 eda Entner-Doudoroff 61.6 36 0.00077 24.7 5.9 80 3-94 15-104 (204)
337 TIGR01421 gluta_reduc_1 glutat 61.5 37 0.00079 26.9 6.4 53 40-95 166-225 (450)
338 TIGR02053 MerA mercuric reduct 61.4 34 0.00073 26.9 6.2 53 40-95 166-225 (463)
339 PRK06139 short chain dehydroge 61.2 33 0.00071 26.0 5.9 55 37-94 4-58 (330)
340 PRK06198 short chain dehydroge 61.0 45 0.00097 23.5 6.3 36 37-74 3-39 (260)
341 PF00670 AdoHcyase_NAD: S-aden 61.0 18 0.00038 25.5 4.1 34 37-73 20-53 (162)
342 PRK07846 mycothione reductase; 61.0 41 0.0009 26.6 6.7 43 40-85 166-211 (451)
343 PRK06019 phosphoribosylaminoim 61.0 24 0.00053 27.2 5.2 33 41-76 3-35 (372)
344 PRK08217 fabG 3-ketoacyl-(acyl 60.9 45 0.00098 23.1 6.3 35 38-74 3-37 (253)
345 TIGR01350 lipoamide_DH dihydro 60.8 42 0.00091 26.2 6.6 53 40-95 170-229 (461)
346 PF13839 PC-Esterase: GDSL/SGN 60.8 8.9 0.00019 27.2 2.6 27 37-63 12-38 (263)
347 PRK05476 S-adenosyl-L-homocyst 60.8 18 0.00038 29.2 4.5 35 37-74 209-243 (425)
348 TIGR01317 GOGAT_sm_gam glutama 60.7 57 0.0012 26.2 7.4 54 39-95 142-211 (485)
349 PTZ00052 thioredoxin reductase 60.7 34 0.00074 27.5 6.2 53 40-95 182-240 (499)
350 PRK13803 bifunctional phosphor 60.4 24 0.00051 29.6 5.4 53 43-98 322-375 (610)
351 COG2072 TrkA Predicted flavopr 60.4 19 0.0004 28.8 4.6 35 36-73 171-205 (443)
352 TIGR01316 gltA glutamate synth 60.4 56 0.0012 25.9 7.3 55 38-95 131-201 (449)
353 TIGR01372 soxA sarcosine oxida 60.4 34 0.00073 30.2 6.5 54 38-95 315-369 (985)
354 cd01981 Pchlide_reductase_B Pc 60.3 43 0.00092 26.4 6.6 35 37-74 298-333 (430)
355 PRK04346 tryptophan synthase s 60.2 27 0.00058 27.8 5.4 52 43-98 110-163 (397)
356 PRK12748 3-ketoacyl-(acyl-carr 60.1 58 0.0013 23.0 7.1 39 37-75 2-40 (256)
357 COG0499 SAM1 S-adenosylhomocys 60.0 50 0.0011 26.7 6.8 61 32-94 34-98 (420)
358 COG1171 IlvA Threonine dehydra 60.0 35 0.00075 27.0 5.9 43 53-97 84-126 (347)
359 TIGR02244 HAD-IG-Ncltidse HAD 59.7 39 0.00086 26.5 6.2 33 37-74 291-324 (343)
360 PRK12779 putative bifunctional 59.6 45 0.00098 29.5 7.1 56 38-96 304-375 (944)
361 PRK07417 arogenate dehydrogena 59.6 36 0.00078 25.1 5.8 30 42-74 2-31 (279)
362 PF01522 Polysacc_deac_1: Poly 59.5 10 0.00022 23.8 2.5 41 54-94 82-122 (123)
363 TIGR01861 ANFD nitrogenase iro 59.5 21 0.00045 29.4 4.8 36 36-74 324-360 (513)
364 cd00115 LMWPc Substituted upda 59.5 40 0.00087 22.1 5.5 54 42-95 2-62 (141)
365 TIGR03844 cysteate_syn cysteat 59.5 20 0.00043 28.4 4.6 26 52-77 126-151 (398)
366 PRK05867 short chain dehydroge 59.3 58 0.0013 22.9 6.7 36 37-74 6-41 (253)
367 PRK05876 short chain dehydroge 58.7 50 0.0011 24.0 6.4 35 37-73 3-37 (275)
368 PRK10358 putative rRNA methyla 58.7 49 0.0011 22.8 6.0 42 41-85 2-45 (157)
369 COG0284 PyrF Orotidine-5'-phos 58.6 21 0.00046 26.5 4.4 43 47-91 72-115 (240)
370 TIGR03206 benzo_BadH 2-hydroxy 58.6 58 0.0012 22.6 6.5 35 38-74 1-35 (250)
371 PLN02494 adenosylhomocysteinas 58.5 24 0.00052 29.0 4.9 34 38-74 252-285 (477)
372 PLN03050 pyridoxine (pyridoxam 58.3 61 0.0013 24.0 6.8 54 41-94 62-117 (246)
373 TIGR01035 hemA glutamyl-tRNA r 58.1 26 0.00056 27.7 5.0 40 32-74 172-212 (417)
374 cd00316 Oxidoreductase_nitroge 57.9 26 0.00056 26.8 4.9 35 36-73 275-309 (399)
375 TIGR03315 Se_ygfK putative sel 57.8 50 0.0011 29.7 7.1 54 39-95 536-605 (1012)
376 PRK07791 short chain dehydroge 57.8 71 0.0015 23.3 7.1 35 37-73 3-37 (286)
377 PRK13802 bifunctional indole-3 57.6 31 0.00067 29.6 5.6 53 43-98 383-436 (695)
378 PRK05653 fabG 3-ketoacyl-(acyl 57.4 60 0.0013 22.3 6.9 35 38-74 3-37 (246)
379 PRK06172 short chain dehydroge 57.3 61 0.0013 22.7 6.5 35 37-73 4-38 (253)
380 PRK05717 oxidoreductase; Valid 57.2 28 0.00061 24.6 4.7 36 36-73 6-41 (255)
381 PLN02948 phosphoribosylaminoim 57.0 32 0.0007 28.6 5.6 37 37-76 19-55 (577)
382 TIGR00185 rRNA_methyl_2 rRNA m 57.0 52 0.0011 22.3 5.9 38 42-82 3-42 (153)
383 TIGR00050 rRNA_methyl_1 RNA me 57.0 65 0.0014 23.5 6.7 42 39-84 2-46 (233)
384 COG0503 Apt Adenine/guanine ph 56.9 24 0.00051 24.9 4.2 36 39-74 115-151 (179)
385 PRK09449 dUMP phosphatase; Pro 56.8 57 0.0012 22.7 6.2 58 14-76 133-199 (224)
386 PRK06138 short chain dehydroge 56.8 34 0.00074 23.8 5.1 34 38-73 3-36 (252)
387 TIGR03140 AhpF alkyl hydropero 56.6 51 0.0011 26.6 6.6 54 39-95 351-406 (515)
388 PRK02228 V-type ATP synthase s 56.5 29 0.00063 22.1 4.2 26 42-74 2-27 (100)
389 PRK07231 fabG 3-ketoacyl-(acyl 56.4 34 0.00074 23.8 5.0 35 38-74 3-37 (251)
390 PRK06079 enoyl-(acyl carrier p 56.2 36 0.00078 24.2 5.2 39 36-74 3-41 (252)
391 PTZ00079 NADP-specific glutama 56.0 25 0.00055 28.7 4.7 38 33-73 229-267 (454)
392 PRK12859 3-ketoacyl-(acyl-carr 55.9 71 0.0015 22.7 8.4 38 36-73 2-39 (256)
393 TIGR01161 purK phosphoribosyla 55.8 21 0.00046 27.1 4.1 32 42-76 1-32 (352)
394 TIGR02374 nitri_red_nirB nitri 55.8 55 0.0012 28.1 6.9 55 39-96 139-201 (785)
395 PRK10126 tyrosine phosphatase; 55.6 60 0.0013 21.7 6.0 52 41-95 3-61 (147)
396 PRK12745 3-ketoacyl-(acyl-carr 55.6 68 0.0015 22.4 6.8 31 41-73 3-33 (256)
397 PRK05446 imidazole glycerol-ph 55.4 1E+02 0.0022 24.3 9.2 44 37-87 118-161 (354)
398 PLN02852 ferredoxin-NADP+ redu 55.4 49 0.0011 27.1 6.3 46 39-92 165-210 (491)
399 cd08556 GDPD Glycerophosphodie 55.4 60 0.0013 21.7 8.2 89 6-98 77-167 (189)
400 PRK02472 murD UDP-N-acetylmura 55.3 78 0.0017 24.7 7.3 53 38-94 3-55 (447)
401 TIGR02254 YjjG/YfnB HAD superf 55.2 63 0.0014 22.2 6.2 57 14-75 135-200 (224)
402 PRK12747 short chain dehydroge 55.1 71 0.0015 22.4 6.6 34 38-73 2-35 (252)
403 PRK05866 short chain dehydroge 54.8 55 0.0012 24.1 6.1 37 36-74 36-72 (293)
404 PRK06500 short chain dehydroge 54.8 69 0.0015 22.2 7.8 36 37-74 3-38 (249)
405 PRK14478 nitrogenase molybdenu 54.7 26 0.00056 28.3 4.6 36 36-74 320-355 (475)
406 TIGR01505 tartro_sem_red 2-hyd 54.7 37 0.00079 25.1 5.1 30 42-74 1-30 (291)
407 PRK08278 short chain dehydroge 54.5 79 0.0017 22.8 7.9 36 38-75 4-39 (273)
408 TIGR00644 recJ single-stranded 54.3 65 0.0014 26.4 6.9 56 39-94 53-114 (539)
409 PRK07349 amidophosphoribosyltr 54.3 25 0.00054 28.9 4.5 40 37-76 374-417 (500)
410 PRK12549 shikimate 5-dehydroge 54.3 36 0.00079 25.5 5.1 36 36-74 123-159 (284)
411 PRK08703 short chain dehydroge 54.2 42 0.00091 23.4 5.2 37 37-75 3-39 (239)
412 PRK06841 short chain dehydroge 54.1 41 0.00089 23.6 5.1 36 37-74 12-47 (255)
413 PRK06057 short chain dehydroge 54.0 39 0.00085 23.8 5.0 35 37-73 4-38 (255)
414 PRK07666 fabG 3-ketoacyl-(acyl 53.7 72 0.0016 22.1 6.5 35 38-74 5-39 (239)
415 COG1819 Glycosyl transferases, 53.6 45 0.00097 26.4 5.7 49 41-95 2-52 (406)
416 TIGR01282 nifD nitrogenase mol 53.6 88 0.0019 25.3 7.4 35 36-73 331-365 (466)
417 PRK00045 hemA glutamyl-tRNA re 53.5 33 0.00071 27.1 4.9 39 33-74 175-214 (423)
418 PRK02797 4-alpha-L-fucosyltran 53.4 25 0.00055 27.5 4.1 41 45-86 153-194 (322)
419 TIGR02691 arsC_pI258_fam arsen 53.2 25 0.00055 23.2 3.7 29 67-95 27-55 (129)
420 PRK12359 flavodoxin FldB; Prov 53.2 44 0.00095 23.5 5.1 45 37-81 76-128 (172)
421 PRK07063 short chain dehydroge 53.0 42 0.0009 23.7 5.0 37 36-74 3-39 (260)
422 cd01977 Nitrogenase_VFe_alpha 52.9 43 0.00093 26.4 5.5 36 36-74 284-320 (415)
423 PRK09730 putative NAD(P)-bindi 52.9 74 0.0016 22.0 6.6 30 42-73 3-32 (247)
424 PF00208 ELFV_dehydrog: Glutam 52.9 21 0.00045 26.5 3.5 38 37-77 29-74 (244)
425 PRK07066 3-hydroxybutyryl-CoA 52.7 29 0.00062 26.8 4.4 31 41-74 8-38 (321)
426 PRK08303 short chain dehydroge 52.7 95 0.0021 23.1 7.5 37 36-74 4-40 (305)
427 PRK01189 V-type ATP synthase s 52.5 42 0.00091 21.7 4.5 44 42-94 4-48 (104)
428 PLN02545 3-hydroxybutyryl-CoA 52.3 33 0.00072 25.4 4.6 31 41-74 5-35 (295)
429 KOG0572|consensus 51.7 51 0.0011 26.9 5.7 39 37-75 353-395 (474)
430 PRK14989 nitrite reductase sub 51.6 62 0.0013 28.3 6.6 54 39-95 144-205 (847)
431 PRK12778 putative bifunctional 51.6 86 0.0019 26.6 7.4 55 38-95 429-499 (752)
432 TIGR01438 TGR thioredoxin and 51.5 46 0.001 26.7 5.6 52 41-95 181-238 (484)
433 KOG0107|consensus 51.5 29 0.00062 25.3 3.9 40 40-79 9-51 (195)
434 PRK06522 2-dehydropantoate 2-r 51.4 62 0.0014 23.6 5.9 30 42-74 2-31 (304)
435 PRK06781 amidophosphoribosyltr 51.4 33 0.00071 28.0 4.7 39 37-75 345-387 (471)
436 PLN02712 arogenate dehydrogena 51.2 30 0.00065 29.4 4.6 36 37-75 366-401 (667)
437 COG2263 Predicted RNA methylas 51.1 58 0.0013 23.8 5.5 55 34-97 40-98 (198)
438 cd03466 Nitrogenase_NifN_2 Nit 51.0 50 0.0011 26.2 5.6 35 37-74 297-331 (429)
439 COG4822 CbiK Cobalamin biosynt 51.0 65 0.0014 24.3 5.8 61 33-93 129-194 (265)
440 cd01078 NAD_bind_H4MPT_DH NADP 50.9 54 0.0012 22.6 5.2 37 37-75 25-61 (194)
441 TIGR00518 alaDH alanine dehydr 50.8 35 0.00075 26.7 4.6 34 38-74 165-198 (370)
442 PF04244 DPRP: Deoxyribodipyri 50.7 25 0.00053 25.9 3.6 61 38-98 60-124 (224)
443 PRK02048 4-hydroxy-3-methylbut 50.6 23 0.0005 30.0 3.8 22 32-53 539-560 (611)
444 PRK08085 gluconate 5-dehydroge 50.4 49 0.0011 23.3 5.1 36 36-73 5-40 (254)
445 PRK07109 short chain dehydroge 50.2 72 0.0016 24.1 6.2 36 37-74 5-40 (334)
446 TIGR01283 nifE nitrogenase mol 50.1 38 0.00081 27.1 4.8 35 36-73 322-356 (456)
447 PRK00258 aroE shikimate 5-dehy 50.1 37 0.00079 25.2 4.5 35 37-74 120-155 (278)
448 TIGR01809 Shik-DH-AROM shikima 49.9 39 0.00084 25.3 4.6 35 37-74 122-157 (282)
449 PRK06292 dihydrolipoamide dehy 49.7 62 0.0013 25.3 5.9 35 39-76 168-202 (460)
450 PRK13940 glutamyl-tRNA reducta 49.6 43 0.00093 26.7 5.0 40 32-74 173-213 (414)
451 PRK06194 hypothetical protein; 49.6 94 0.002 22.2 6.8 36 37-74 3-38 (287)
452 COG1249 Lpd Pyruvate/2-oxoglut 49.5 79 0.0017 25.6 6.6 44 41-87 174-220 (454)
453 cd05213 NAD_bind_Glutamyl_tRNA 49.5 1E+02 0.0022 23.3 6.9 40 32-74 170-210 (311)
454 PF04723 GRDA: Glycine reducta 49.2 32 0.00069 24.0 3.7 39 37-77 2-41 (150)
455 TIGR03315 Se_ygfK putative sel 49.1 87 0.0019 28.2 7.2 55 38-95 664-723 (1012)
456 PRK07201 short chain dehydroge 49.1 63 0.0014 26.3 6.1 37 36-74 367-403 (657)
457 PRK05786 fabG 3-ketoacyl-(acyl 49.0 49 0.0011 22.9 4.8 35 38-74 3-37 (238)
458 KOG2941|consensus 49.0 44 0.00095 27.0 4.9 44 41-84 15-58 (444)
459 PRK12742 oxidoreductase; Provi 48.9 61 0.0013 22.4 5.3 35 37-73 3-37 (237)
460 PRK08341 amidophosphoribosyltr 48.9 35 0.00076 27.6 4.5 39 37-75 331-373 (442)
461 COG0766 MurA UDP-N-acetylgluco 48.9 84 0.0018 25.6 6.5 87 5-98 191-279 (421)
462 COG3233 Predicted deacetylase 48.8 31 0.00067 25.8 3.8 39 57-95 100-138 (233)
463 PLN02178 cinnamyl-alcohol dehy 48.7 97 0.0021 23.8 6.8 33 39-74 178-210 (375)
464 cd03802 GT1_AviGT4_like This f 48.7 57 0.0012 23.4 5.3 36 42-77 2-47 (335)
465 cd01965 Nitrogenase_MoFe_beta_ 48.6 24 0.00053 27.8 3.5 34 36-72 295-328 (428)
466 COG1064 AdhP Zn-dependent alco 48.5 1.1E+02 0.0024 24.0 7.0 52 37-96 164-215 (339)
467 PRK06388 amidophosphoribosyltr 48.5 35 0.00075 27.9 4.4 40 37-76 353-396 (474)
468 PRK06184 hypothetical protein; 48.5 65 0.0014 25.7 5.9 31 40-73 3-33 (502)
469 PRK06077 fabG 3-ketoacyl-(acyl 48.4 90 0.002 21.6 7.0 34 38-73 4-37 (252)
470 PF07429 Glyco_transf_56: 4-al 48.3 29 0.00063 27.6 3.8 47 40-87 184-234 (360)
471 PRK08339 short chain dehydroge 48.1 78 0.0017 22.7 5.9 36 37-74 5-40 (263)
472 TIGR01286 nifK nitrogenase mol 48.0 27 0.00059 28.7 3.8 33 37-72 360-392 (515)
473 PF05761 5_nucleotid: 5' nucle 47.9 44 0.00096 27.1 4.9 38 34-75 289-326 (448)
474 PHA03200 uracil DNA glycosylas 47.8 35 0.00076 25.9 4.0 41 36-87 80-121 (255)
475 PF03721 UDPG_MGDP_dh_N: UDP-g 47.7 52 0.0011 23.1 4.8 29 42-73 2-30 (185)
476 PRK05854 short chain dehydroge 47.6 52 0.0011 24.5 5.0 37 36-74 10-46 (313)
477 PRK06523 short chain dehydroge 47.1 58 0.0013 22.9 5.0 36 36-73 5-40 (260)
478 PRK12429 3-hydroxybutyrate deh 47.1 95 0.0021 21.6 6.6 35 38-74 2-36 (258)
479 PRK08159 enoyl-(acyl carrier p 47.1 62 0.0013 23.5 5.3 38 36-73 6-43 (272)
480 TIGR01285 nifN nitrogenase mol 47.0 33 0.00071 27.4 4.0 35 36-73 307-341 (432)
481 PRK03892 ribonuclease P protei 46.9 1.2E+02 0.0025 22.5 8.9 86 5-97 45-136 (216)
482 PRK06200 2,3-dihydroxy-2,3-dih 46.8 56 0.0012 23.1 4.9 37 36-74 2-38 (263)
483 PRK06756 flavodoxin; Provision 46.7 82 0.0018 20.7 6.0 52 37-90 80-139 (148)
484 COG0059 IlvC Ketol-acid reduct 46.6 74 0.0016 25.1 5.7 51 37-94 15-65 (338)
485 PRK02006 murD UDP-N-acetylmura 46.5 1E+02 0.0023 24.6 6.9 39 35-76 2-40 (498)
486 PRK09260 3-hydroxybutyryl-CoA 46.4 66 0.0014 23.7 5.4 31 41-74 2-32 (288)
487 PRK06035 3-hydroxyacyl-CoA deh 46.3 42 0.0009 24.8 4.3 31 41-74 4-34 (291)
488 PRK11749 dihydropyrimidine deh 46.3 1.3E+02 0.0028 23.8 7.2 34 38-74 138-171 (457)
489 PRK07856 short chain dehydroge 46.2 59 0.0013 22.9 5.0 36 37-74 3-38 (252)
490 TIGR03366 HpnZ_proposed putati 46.2 1.1E+02 0.0024 22.1 6.9 36 35-73 116-152 (280)
491 PRK08265 short chain dehydroge 46.2 60 0.0013 23.1 5.0 36 37-74 3-38 (261)
492 PRK12810 gltD glutamate syntha 45.7 84 0.0018 25.0 6.2 56 38-96 141-212 (471)
493 PRK06603 enoyl-(acyl carrier p 45.6 69 0.0015 22.9 5.3 38 36-73 4-41 (260)
494 PRK07062 short chain dehydroge 45.6 1.1E+02 0.0023 21.7 6.6 37 37-75 5-41 (265)
495 TIGR01334 modD putative molybd 45.6 1.3E+02 0.0029 22.8 7.4 72 5-81 196-271 (277)
496 PF08659 KR: KR domain; Inter 45.6 96 0.0021 21.2 6.6 54 42-97 2-58 (181)
497 PRK02929 L-arabinose isomerase 45.5 87 0.0019 25.8 6.3 69 6-76 129-213 (499)
498 cd01976 Nitrogenase_MoFe_alpha 45.5 50 0.0011 26.2 4.8 35 36-73 296-330 (421)
499 PRK12826 3-ketoacyl-(acyl-carr 45.5 1E+02 0.0022 21.3 6.7 36 37-74 3-38 (251)
500 cd01972 Nitrogenase_VnfE_like 45.4 41 0.0009 26.5 4.3 36 36-74 289-325 (426)
No 1
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=4.1e-31 Score=199.83 Aligned_cols=96 Identities=24% Similarity=0.313 Sum_probs=89.9
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL 49 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~ 49 (99)
++++||++|||||||+|+|+|++|++.|+.+ +|++|.++|+|++|+||+
T Consensus 83 lgr~Esi~DTArVLsr~~D~I~~R~~~~~~ve~lA~~s~VPViNgLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDg 162 (310)
T COG0078 83 LGRGESIKDTARVLSRMVDAIMIRGFSHETLEELAKYSGVPVINGLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDG 162 (310)
T ss_pred cCCCCcHHHHHHHHHhhhheEEEecccHHHHHHHHHhCCCceEcccccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCc
Confidence 4789999999999999999999999999988 799999999999999999
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~ 98 (99)
|| |+|||+.++++|||++++++|++|+|+++++++|+ ++|+++++.+
T Consensus 163 NN--v~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~ 213 (310)
T COG0078 163 NN--VANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTE 213 (310)
T ss_pred ch--HHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEec
Confidence 76 99999999999999999999999999999998865 5688998875
No 2
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=99.96 E-value=5.4e-29 Score=188.76 Aligned_cols=98 Identities=49% Similarity=0.743 Sum_probs=92.0
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH--------------------------------HHHhcCCCCcEEEEECC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEEMGRVNGLTITMVGD 48 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------------~e~~g~l~g~~i~~vGd 48 (99)
+++|||++|||+|||+|+|+||+||+.|+.+ +|+||+++|+||+|+||
T Consensus 79 ~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD 158 (301)
T TIGR00670 79 VAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGD 158 (301)
T ss_pred CCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEcc
Confidence 4789999999999999999999999999877 68899999999999999
Q ss_pred CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 49 LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 49 ~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
+.++||+|||+.++++||++|++++|++|++|+++++++++.|+++++++
T Consensus 159 ~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 159 LKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred CCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 98778999999999999999999999999999999999999999988764
No 3
>PLN02527 aspartate carbamoyltransferase
Probab=99.96 E-value=2.3e-28 Score=185.59 Aligned_cols=98 Identities=45% Similarity=0.748 Sum_probs=91.8
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH--------------------------------HHHhcCCCCcEEEEECC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEEMGRVNGLTITMVGD 48 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------------~e~~g~l~g~~i~~vGd 48 (99)
+++|||++|||+|||+|+|+||+||+.++.+ +|++|+++|+||+|+||
T Consensus 80 ~~kgEs~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~vGD 159 (306)
T PLN02527 80 AAKGETLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGD 159 (306)
T ss_pred cCCCcCHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECC
Confidence 3689999999999999999999999999877 68899999999999999
Q ss_pred CCCchhHHHHHHHHhhC-CCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 49 LKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 49 ~~n~rv~~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
+.|+||+|||+.++++| |++|++++|++|++++++.++++++|+++++++
T Consensus 160 ~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 160 LANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred CCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 97789999999999998 999999999999999999999999999998765
No 4
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=99.95 E-value=2.9e-27 Score=179.40 Aligned_cols=96 Identities=25% Similarity=0.292 Sum_probs=87.6
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL 49 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~ 49 (99)
+++|||++||+++||+|+|+|++||+.++.+ +|++|+++|+||+|+||+
T Consensus 77 ~~kgEsl~Dt~~vls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~l~g~kva~vGD~ 156 (302)
T PRK14805 77 LGKRESVADFAANLSCWADAIVARVFSHSTIEQLAEHGSVPVINALCDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDG 156 (302)
T ss_pred CCCCcCHHHHHHHHHHhCCEEEEeCCChhHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEcCC
Confidence 4789999999999999999999999999977 788999999999999998
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~ 98 (99)
+| |+|||+.++++||++|++++|++|+|+++++++| +++|+++++++
T Consensus 157 ~~--v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 157 NN--VTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred Cc--cHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 75 9999999999999999999999999999988664 45788887764
No 5
>PLN02342 ornithine carbamoyltransferase
Probab=99.95 E-value=5.5e-27 Score=180.82 Aligned_cols=96 Identities=26% Similarity=0.315 Sum_probs=88.8
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL 49 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~ 49 (99)
+++|||++||++|||+|+|+||+||+.++.+ +|++|+++|+||+|+||+
T Consensus 124 ~~kGESl~DTarvLs~y~D~IviR~~~~~~~~~la~~~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G~l~glkva~vGD~ 203 (348)
T PLN02342 124 LGKREETRDIARVLSRYNDIIMARVFAHQDVLDLAEYSSVPVINGLTDYNHPCQIMADALTIIEHIGRLEGTKVVYVGDG 203 (348)
T ss_pred CCCCcCHHHHHHHHHHhCCEEEEeCCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCC
Confidence 4689999999999999999999999999877 688999999999999998
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCC-eEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGK-QQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~-~~~~~~ 98 (99)
+| |+|||+.++++||++|++++|++|++++++++++++.|. ++++++
T Consensus 204 ~n--va~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 204 NN--IVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred ch--hHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 76 999999999999999999999999999999999988774 777664
No 6
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=99.95 E-value=6.8e-27 Score=179.66 Aligned_cols=98 Identities=43% Similarity=0.720 Sum_probs=89.1
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH--------------------------------HHHh----cCCCCcEEE
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEEM----GRVNGLTIT 44 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------------~e~~----g~l~g~~i~ 44 (99)
+++|||++|||+|||+|+|+||+||+.++.+ +|++ |+++|+||+
T Consensus 84 ~~kgEsl~Dtarvls~y~D~IviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia 163 (338)
T PRK08192 84 LSKGESLYDTARVLSTYSDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIA 163 (338)
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEE
Confidence 4789999999999999999999999999876 6776 379999999
Q ss_pred EECCCCCchhHHHHHHHHh-hCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 45 MVGDLKNGRTVHSLARLLT-LYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 45 ~vGd~~n~rv~~Sl~~~~~-~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
|+||++|+|++|||+.+++ .+|++|++++|++|+++++++++++++|+++++++
T Consensus 164 ~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 164 MVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred EECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 9999987899999998766 56999999999999999999999999999998865
No 7
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=99.94 E-value=1e-26 Score=178.26 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=87.9
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHH-hcCCCCcEEEEECC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEE-MGRVNGLTITMVGD 48 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~-~g~l~g~~i~~vGd 48 (99)
+++|||++||++|||+|+|+||+||+.++.+ +|+ +|.++|+||+||||
T Consensus 84 ~~kgEsl~DTarvls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD 163 (332)
T PRK04284 84 MGKKESTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGD 163 (332)
T ss_pred CCCCcCHHHHHHHHHHhCCEEEEecCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecC
Confidence 4689999999999999999999999999977 688 69999999999999
Q ss_pred CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411 49 LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE 98 (99)
Q Consensus 49 ~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~ 98 (99)
+.| ||+|||+.++++||++|++++|++|+|++++++.++ +.|+++++++
T Consensus 164 ~~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 164 GRN-NVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred CCc-chHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 855 799999999999999999999999999999986654 6788888764
No 8
>KOG1504|consensus
Probab=99.94 E-value=8.5e-28 Score=179.44 Aligned_cols=95 Identities=24% Similarity=0.387 Sum_probs=88.2
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc-CCCCcEEEEECC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG-RVNGLTITMVGD 48 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g-~l~g~~i~~vGd 48 (99)
|+.+||++||+||||+|+|+|++|+++|+++ +|+|| +++|+|++||||
T Consensus 119 lGvnEs~~DtarVlSsm~d~I~ARV~khsDi~tlak~sSvPiINgL~D~~HPlQ~laD~LTi~E~f~ks~~glkvawiGD 198 (346)
T KOG1504|consen 119 LGVNESLYDTARVLSSMVDIIMARVNKHSDILTLAKYSSVPIINGLCDHFHPLQILADLLTIIEHFGKSVEGLKVAWIGD 198 (346)
T ss_pred cccchhhHhHHHHHHHHHHHHHHHHhhhhhHHHHhhccCCceecccccccChHHHHHHHHHHHHHHhccccccEEEEEcc
Confidence 5679999999999999999999999999988 79996 599999999999
Q ss_pred CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEE
Q psy4411 49 LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVY 97 (99)
Q Consensus 49 ~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~ 97 (99)
+|| |.|||++++++||+++..++|+||+|+.+++.+| ++||.++|+.
T Consensus 199 ~NN--vlhs~mia~ak~gih~s~atPkg~e~d~div~~akq~a~eNgsk~elt 249 (346)
T KOG1504|consen 199 GNN--VLHSWMIAAAKFGIHFSCATPKGYEPDKDIVSKAKQAAEENGSKFELT 249 (346)
T ss_pred ccH--HHHHHHHHhhhcceEEEecCCCCCCcchHHHHHHHHHHHhcCCEEEEe
Confidence 998 9999999999999999999999999999998665 4789999875
No 9
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=99.94 E-value=1.3e-26 Score=182.61 Aligned_cols=98 Identities=48% Similarity=0.782 Sum_probs=90.4
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH--------------------------------HHHhc----CCCCcEEE
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------------KEEMG----RVNGLTIT 44 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------------~e~~g----~l~g~~i~ 44 (99)
+++|||++|||+|||+|+|+||+||+.|+.+ +|+|| .++|+||+
T Consensus 166 ~~kGESi~DTarvLs~y~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa 245 (429)
T PRK11891 166 MAKGESIYDTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIA 245 (429)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEE
Confidence 4689999999999999999999999999877 68885 39999999
Q ss_pred EECCCCCchhHHHHHHHHhhC-CCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 45 MVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 45 ~vGd~~n~rv~~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
||||+.|+||+||++.+++++ |++|++++|++|+++++++++++++|+++++++
T Consensus 246 ~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 246 LVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 999998779999999998887 999999999999999999999999999998865
No 10
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=99.94 E-value=1.9e-26 Score=176.87 Aligned_cols=97 Identities=25% Similarity=0.287 Sum_probs=88.3
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL 49 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~ 49 (99)
+++|||++||++|||+|+|+||+||+.++.+ +|++|.++|+||+||||+
T Consensus 85 ~~kgEsl~Dt~rvls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~ 164 (331)
T PRK02102 85 LGKKESIEDTARVLGRMYDGIEYRGFKQEIVEELAKYSGVPVWNGLTDEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDG 164 (331)
T ss_pred CCCCcCHHHHHHHHhhcCCEEEEECCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 4689999999999999999999999999877 688999999999999998
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~ 98 (99)
.| ||+|||+.++++||++|++++|++|+++++++++++ +.|.++++++
T Consensus 165 ~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 165 RN-NMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred cc-cHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 65 699999999999999999999999999999887654 4788888764
No 11
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=99.94 E-value=2e-26 Score=176.76 Aligned_cols=97 Identities=21% Similarity=0.237 Sum_probs=87.4
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc-CCCCcEEEEECC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG-RVNGLTITMVGD 48 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g-~l~g~~i~~vGd 48 (99)
+++|||++||+++||+|+|+||+||+.++.+ +|++| .++|+||+|+||
T Consensus 85 ~~kgEsl~DTarvls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD 164 (334)
T PRK01713 85 IGHKESMKDTARVLGRMYDAIEYRGFKQSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGD 164 (334)
T ss_pred CCCCcCHHHHHHHHHHhCCEEEEEcCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECC
Confidence 4689999999999999999999999999977 68888 799999999999
Q ss_pred CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411 49 LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE 98 (99)
Q Consensus 49 ~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~ 98 (99)
+.| +|+|||+.++++||++|++++|++|.|++++++.+ +++|+++++++
T Consensus 165 ~~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 165 ARN-NMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred Ccc-CHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 866 49999999999999999999999999999887554 45788988765
No 12
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=99.94 E-value=2.7e-26 Score=176.26 Aligned_cols=97 Identities=23% Similarity=0.233 Sum_probs=87.3
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc--CCCCcEEEEEC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG--RVNGLTITMVG 47 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g--~l~g~~i~~vG 47 (99)
+++|||++||++|||+|+|+|++||+.|+.+ +|+|| +++|+||+|+|
T Consensus 84 ~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vG 163 (336)
T PRK03515 84 IGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAG 163 (336)
T ss_pred CCCCCCHHHHHHHHHHhCcEEEEEeCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeC
Confidence 4689999999999999999999999999977 68885 59999999999
Q ss_pred CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411 48 DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE 98 (99)
Q Consensus 48 d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~ 98 (99)
|+.| ||+|||+.++++||+++++++|++|+|++++++.+ +++|+++++++
T Consensus 164 D~~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 164 DARN-NMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred CCcC-cHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 9855 69999999999999999999999999999888654 45788888765
No 13
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=99.94 E-value=7.6e-26 Score=173.69 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=86.8
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc--CCCCcEEEEEC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG--RVNGLTITMVG 47 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g--~l~g~~i~~vG 47 (99)
+++|||++||++|||+|+|+|++||+.++.+ +|++| .++|+||+|||
T Consensus 84 ~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vG 163 (334)
T PRK12562 84 IGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAG 163 (334)
T ss_pred CCCCcCHHHHHHHHHHhCCEEEEECCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEEC
Confidence 4789999999999999999999999999977 68886 49999999999
Q ss_pred CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411 48 DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE 98 (99)
Q Consensus 48 d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~ 98 (99)
|+.| ||+|||+.++++||++|++++|++|+|++++++++ ++.|+++++++
T Consensus 164 D~~~-~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 164 DARN-NMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred CCCC-CHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 9865 69999999999999999999999999999888654 45688887764
No 14
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=99.93 E-value=9.3e-26 Score=171.11 Aligned_cols=96 Identities=23% Similarity=0.271 Sum_probs=87.6
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL 49 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~ 49 (99)
+.+|||++||++|||+|+|+|++||+.++.+ +|++|+++|+||+|+||.
T Consensus 78 ~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~l~g~~v~~vGd~ 157 (304)
T TIGR00658 78 LGRGESIKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPVINGLTDLFHPCQALADLLTIIEHFGKLKGVKVVYVGDG 157 (304)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCcEEEEEeCC
Confidence 4689999999999999999999999999877 688999999999999998
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~ 98 (99)
+ ||+|||+.++++||++|++++|++|++++++.+++ ++.|+++++++
T Consensus 158 ~--~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 158 N--NVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred C--chHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 5 59999999999999999999999999999988776 45788888764
No 15
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=99.93 E-value=1.3e-25 Score=170.42 Aligned_cols=96 Identities=28% Similarity=0.334 Sum_probs=88.0
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhcCCCCcEEEEECCC
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGRVNGLTITMVGDL 49 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g~l~g~~i~~vGd~ 49 (99)
+.+|||++||+++||+|+|+|++||+.++.+ +|++|.++|+||+|+||.
T Consensus 82 ~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd~ 161 (304)
T PRK00779 82 LGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYEHRGSLKGLKVAWVGDG 161 (304)
T ss_pred CCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEeCC
Confidence 4689999999999999999999999998877 688999999999999995
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHH-HHhcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF-VASKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~-a~~~g~~~~~~~ 98 (99)
+ ||+||++.++++||++|++++|++|+++++++++ ++++|+++++++
T Consensus 162 ~--~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 162 N--NVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred C--ccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 4 6999999999999999999999999999988877 778899888764
No 16
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=99.93 E-value=1.2e-25 Score=172.77 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=86.5
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc---CCCCcEEEEE
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG---RVNGLTITMV 46 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g---~l~g~~i~~v 46 (99)
+++|||++||++|||+|+|+|++||+.|+.+ +|++| .++|+||+|+
T Consensus 81 ~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~v 160 (338)
T PRK02255 81 LGGHESLEDTARVLSRLVDIIMARVDRHQTVVELAKYATVPVINGMSDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFV 160 (338)
T ss_pred CCCCcCHHHHHHHHHHhCcEEEEecCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEE
Confidence 4689999999999999999999999999877 68885 6999999999
Q ss_pred CCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH----hcCCeEEEEe
Q psy4411 47 GDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA----SKGKQQEVYE 98 (99)
Q Consensus 47 Gd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~----~~g~~~~~~~ 98 (99)
||++| |+|||+.++++||++|++++|++|+++++++++++ .+|+++++++
T Consensus 161 GD~~~--v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 161 GDATQ--VCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred CCCch--HHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 99865 99999999999999999999999999999987765 4688888764
No 17
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=99.93 E-value=3.7e-25 Score=177.77 Aligned_cols=98 Identities=31% Similarity=0.543 Sum_probs=88.4
Q ss_pred CCCCCCHHHHHHHHhhccC--EEEEccCCchh----------------------H--------------------HHHhc
Q psy4411 1 MMMYSNLIDTVAVLSGYAD--VIVLRHPEPGA----------------------V--------------------KEEMG 36 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D--~iv~R~~~~~~----------------------~--------------------~e~~g 36 (99)
+++|||++|||+|||+|+| +|++||+..+. + +|++|
T Consensus 90 l~kGESl~DTarvLs~y~D~d~IviR~~~~g~~~~~~~~l~~~a~~s~vpVp~VINAgdg~~~HPTQaLaDl~TI~E~~G 169 (525)
T PRK13376 90 FNKQESYTDTFNMLTGYSDYSIFIVRTRLEGVCRLLEEKVSEFASRNGIEVPAFINAGDGKHEHPTQELLDEFTFLEQNN 169 (525)
T ss_pred CCCCcCHHHHHHHHHHcCCCcEEEEeCCccchhHHHHHHHHHHHHhcCCCcceEEECCCCCCCCchHHHHHHHHHHHHcC
Confidence 5789999999999999999 99999964110 1 78898
Q ss_pred -CCCCcEEEEECCCCCchhHHHHHHHHhhCC-CEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 37 -RVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 37 -~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G-~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
+++|+||+|+||+.|+||+|||+.++++|| ++|++++|++|+++++++++++++|+++++++
T Consensus 170 ~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 170 FDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 799999999999988899999999999998 99999999999999999999999999998765
No 18
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=99.92 E-value=7.6e-25 Score=166.19 Aligned_cols=96 Identities=43% Similarity=0.614 Sum_probs=88.9
Q ss_pred CCCCCHHHHHHHHhhc-cCEEEEccCCchhH---------------------------------HHHhcCCCCcEEEEEC
Q psy4411 2 MMYSNLIDTVAVLSGY-ADVIVLRHPEPGAV---------------------------------KEEMGRVNGLTITMVG 47 (99)
Q Consensus 2 ~~~Es~~Dta~vls~y-~D~iv~R~~~~~~~---------------------------------~e~~g~l~g~~i~~vG 47 (99)
.||||+.||+++|+.| +|+||+||+..++. +|+||.++|+||+++|
T Consensus 86 ~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~~~~~pvINaGDG~~qHPTQ~LLDl~TI~~~~G~~~gl~iaivG 165 (316)
T COG0540 86 KKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVNPVINAGDGSHQHPTQALLDLYTIREEFGRLDGLKIAIVG 165 (316)
T ss_pred cccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHHhcCCCceEECCCCCCCCccHHHHHHHHHHHHhCCcCCcEEEEEc
Confidence 6899999999999999 99999999977654 7899999999999999
Q ss_pred CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 48 DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 48 d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
|..||||+||++.++++||.+|.+++|+.+.||+++++.+.+.|..+...
T Consensus 166 DlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~ 215 (316)
T COG0540 166 DLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEH 215 (316)
T ss_pred cccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEe
Confidence 99999999999999999999999999999999999999999887655443
No 19
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=99.92 E-value=5.8e-25 Score=166.99 Aligned_cols=81 Identities=38% Similarity=0.635 Sum_probs=76.0
Q ss_pred CCCCCCHHHHHHHHhhc-cCEEEEccCCchhH--------------------------------HHHhcCCCCcEEEEEC
Q psy4411 1 MMMYSNLIDTVAVLSGY-ADVIVLRHPEPGAV--------------------------------KEEMGRVNGLTITMVG 47 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y-~D~iv~R~~~~~~~--------------------------------~e~~g~l~g~~i~~vG 47 (99)
+++|||++||++|||+| +|+||+||+.|+.+ +|++|.++|+||+|+|
T Consensus 84 ~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~G~l~g~kv~~vG 163 (305)
T PRK00856 84 VSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVPVINAGDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVG 163 (305)
T ss_pred CCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence 36899999999999999 99999999999977 7889999999999999
Q ss_pred CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCH
Q psy4411 48 DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPE 81 (99)
Q Consensus 48 d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~ 81 (99)
|+.|+||+|||+.++++||++|++++|++|+|++
T Consensus 164 D~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~ 197 (305)
T PRK00856 164 DIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG 197 (305)
T ss_pred CCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc
Confidence 9987789999999999999999999999998664
No 20
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=99.92 E-value=3.7e-24 Score=164.40 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=84.4
Q ss_pred CCCCCHHHHHHHHhhccCEEEEccCCc----------hhH------------------------------HHHhcCC-CC
Q psy4411 2 MMYSNLIDTVAVLSGYADVIVLRHPEP----------GAV------------------------------KEEMGRV-NG 40 (99)
Q Consensus 2 ~~~Es~~Dta~vls~y~D~iv~R~~~~----------~~~------------------------------~e~~g~l-~g 40 (99)
.+|||++||++|||+|+|+|++||+.+ ..+ +|++|.+ +|
T Consensus 90 ~kgEsl~Dtarvls~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVINa~~~~HPtQaLaDl~Ti~e~~g~~~~g 169 (335)
T PRK04523 90 ETEEHIREVARVLSRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETITHPCQELAHALALQEHFGTTLRG 169 (335)
T ss_pred CCCcCHHHHHHHHHHhCcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEECCCCCChHHHHHHHHHHHHHhCCccCC
Confidence 589999999999999999999999975 222 6889999 89
Q ss_pred cEE--EEECCC--CCchhHHHHHHHHhhCCCEEEEECC-CCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411 41 LTI--TMVGDL--KNGRTVHSLARLLTLYDVKLNYVSP-PNLGMPESIQEFV----ASKGKQQEVYE 98 (99)
Q Consensus 41 ~~i--~~vGd~--~n~rv~~Sl~~~~~~~G~~v~~~~P-~~~~~~~~~~~~a----~~~g~~~~~~~ 98 (99)
+|| +|+||+ .||||+|||+.++++||++|++++| ++|++++++++++ +++|+++++++
T Consensus 170 ~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 170 KKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred CEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 998 788864 3678999999999999999999999 9999999998764 46788888764
No 21
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=99.91 E-value=1.5e-24 Score=165.07 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=75.8
Q ss_pred CCCCCCHHHHHHHHhhc-cCEEEEccCCchhH---------------------------------HHHhcCCCCcEEEEE
Q psy4411 1 MMMYSNLIDTVAVLSGY-ADVIVLRHPEPGAV---------------------------------KEEMGRVNGLTITMV 46 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y-~D~iv~R~~~~~~~---------------------------------~e~~g~l~g~~i~~v 46 (99)
+++|||++||+++||+| +|+||+||+.|+.+ +|++|+++|+||+|+
T Consensus 84 ~~kgEsl~Dtarvls~y~~D~iv~R~~~~~~~~~~a~~~~~vPvINag~g~~~HPtQaLaDl~Ti~e~~g~l~g~~va~v 163 (310)
T PRK13814 84 ISKGETLFDTIKTLEAMGVYFFIVRHSENETPEQIAKQLSSGVVINAGDGNHQHPSQALIDLMTIKQHKPHWNKLCVTII 163 (310)
T ss_pred CCCCCCHHHHHHHHHHhCCCEEEEeCCchhHHHHHHHhCCCCCeEECCcCCCCCchHHHHHHHHHHHHhCCcCCcEEEEE
Confidence 57899999999999999 69999999998866 788999999999999
Q ss_pred CCCCCchhHHHHHHHHhhCCC-EEEEECCCCCCCCHH
Q psy4411 47 GDLKNGRTVHSLARLLTLYDV-KLNYVSPPNLGMPES 82 (99)
Q Consensus 47 Gd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~~~~~~ 82 (99)
||++++||+|||+.++++||+ +|++++|++|.|++.
T Consensus 164 GD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~ 200 (310)
T PRK13814 164 GDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKV 200 (310)
T ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCcc
Confidence 999877999999999999999 999999999976543
No 22
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=99.90 E-value=2.3e-23 Score=162.95 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=83.3
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCC-----ch----------------------hH--------------------HH
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPE-----PG----------------------AV--------------------KE 33 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~-----~~----------------------~~--------------------~e 33 (99)
+++|||++|||+|||+|+|+||+||+. +. .+ +|
T Consensus 98 ~~kGEsl~DTarvLs~y~D~IviR~~~~~g~~~~~~~ela~~~~~~~~~~~~~~~pPVINa~~~~~HPtQaLaDl~TI~E 177 (395)
T PRK07200 98 IAHGETVRETANMISFMADVIGIRDDMYIGKGNAYMREVGAAVDDGYKQGVLPQRPTLVNLQCDIDHPTQSMADLLHLIE 177 (395)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEecCcccccccHHHHHHHHHhhhhcccccccCCCeEEECCCCCCCcHHHHHHHHHHHH
Confidence 478999999999999999999999952 21 12 78
Q ss_pred HhcC---CCCcEEEEECC-----CCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHH----HHhcCCeEEEEe
Q psy4411 34 EMGR---VNGLTITMVGD-----LKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF----VASKGKQQEVYE 98 (99)
Q Consensus 34 ~~g~---l~g~~i~~vGd-----~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~~~~~~~ 98 (99)
++|. ++|+||+|+|| +.++||+||++.++++||++|++++|++|++++++++. ++++|+++++++
T Consensus 178 ~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 178 HFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred HhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 8997 88889999876 44457999999999999999999999999999998876 456788898765
No 23
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=99.90 E-value=7.5e-23 Score=158.35 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=81.4
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCC-----chh--------------------H----------------------HH
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPE-----PGA--------------------V----------------------KE 33 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~-----~~~--------------------~----------------------~e 33 (99)
+++|||++||++|||+|+|+||+||+. +.. + +|
T Consensus 81 ~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~~~~~~~~s~vPVINa~~~~~HPtQaLaDl~Ti~e 160 (357)
T TIGR03316 81 IGHGETVRETAEMISFFADGIGIRDDMYIGVGNAYMREVAKYVQEGYKDGVLEQRPPLVNLQCDIDHPTQAMADIMTLQE 160 (357)
T ss_pred CCCCCCHHHHHHHHHHhCcEEEEeCCCccccccHHHHHHHHhhhhccccccccCCCCEEECCCCCCCchHHHHHHHHHHH
Confidence 478999999999999999999999942 221 2 68
Q ss_pred HhcC---CCCcEEEEEC--CCCCc---hhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH----HhcCCeEEEEe
Q psy4411 34 EMGR---VNGLTITMVG--DLKNG---RTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV----ASKGKQQEVYE 98 (99)
Q Consensus 34 ~~g~---l~g~~i~~vG--d~~n~---rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a----~~~g~~~~~~~ 98 (99)
+||. ++|+||+++| |+.+| ||+|||+.++++||++|++++|++|++++++++.+ +++|+++++++
T Consensus 161 ~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 237 (357)
T TIGR03316 161 KFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN 237 (357)
T ss_pred HhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 8996 6789999664 54333 69999999999999999999999999999998765 46788988764
No 24
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=99.86 E-value=2.1e-21 Score=147.87 Aligned_cols=91 Identities=20% Similarity=0.163 Sum_probs=75.4
Q ss_pred CCHHHHHHHHhhccCEEEEccCCchhH-------------------------------HHHhc--CCCCcEEEEECCCCC
Q psy4411 5 SNLIDTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMG--RVNGLTITMVGDLKN 51 (99)
Q Consensus 5 Es~~Dta~vls~y~D~iv~R~~~~~~~-------------------------------~e~~g--~l~g~~i~~vGd~~n 51 (99)
|+++||+++||+|+|+|++||+.++.+ +|++| .++|+||+|+||++
T Consensus 85 ~~~~dt~~vls~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~- 163 (311)
T PRK14804 85 SDIDLEARYLSRNVSVIMARLKKHEDLLVMKNGSQVPVINGCDNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHN- 163 (311)
T ss_pred ccHHHHHHHHHhcCCEEEEeCCChHHHHHHHHHCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCC-
Confidence 789999999999999999999999876 78899 79999999999954
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCC--CHHHHHHHHhcCCeEEEEe
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGM--PESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~--~~~~~~~a~~~g~~~~~~~ 98 (99)
||+|||+.++++||++|++++|+++.. .+...+.+++.| .+++++
T Consensus 164 -rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g-~i~~~~ 210 (311)
T PRK14804 164 -NVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKG-TLSWEM 210 (311)
T ss_pred -cHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcC-CeEEEe
Confidence 699999999999999999999999631 122334455555 566543
No 25
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=99.46 E-value=1.4e-13 Score=95.76 Aligned_cols=59 Identities=29% Similarity=0.537 Sum_probs=49.4
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCC--HHHHHHH----HhcCCeEEEEe
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMP--ESIQEFV----ASKGKQQEVYE 98 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~--~~~~~~a----~~~g~~~~~~~ 98 (99)
+|+||+|+|| .++||+|||+.++++||+++++++|+++.++ +++++.+ +++|.++++++
T Consensus 1 ~gl~i~~vGD-~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 1 KGLKIAYVGD-GHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TTEEEEEESS-TTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CCCEEEEECC-CCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 6899999999 6569999999999999999999999996544 4777554 46688888764
No 26
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=98.99 E-value=8.9e-10 Score=75.79 Aligned_cols=62 Identities=35% Similarity=0.567 Sum_probs=49.4
Q ss_pred CCCCCCHHHHHHHHhhccCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTL 64 (99)
Q Consensus 1 ~~~~Es~~Dta~vls~y~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~ 64 (99)
+.+|||++||++|||+|+|+||+|++.++.+.+ +......-|.-.|| .+.--+++|+.+++.
T Consensus 78 ~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~-~a~~~~vPVINa~~-~~~HPtQaL~Dl~Ti 139 (142)
T PF02729_consen 78 LGKGESLEDTARVLSRYVDAIVIRHPSHGALEE-LAEHSSVPVINAGD-DHEHPTQALADLFTI 139 (142)
T ss_dssp TTTSSEHHHHHHHHHHHCSEEEEEESSHHHHHH-HHHHCSSEEEEEEE-SSBSHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhhheEEEEeccchHHHH-HHHhccCCeEcCcC-CCCChHHHHHHHHHH
Confidence 468999999999999999999999999998844 33344677877787 333488999887764
No 27
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.53 E-value=0.044 Score=35.10 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
+++|+++.++|.++ ++..-+..+...|.++++++|+.
T Consensus 4 ~l~~~~vlVvGgG~---va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGP---VAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESH---HHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEECCch
Confidence 58899999999954 99999999999999999999974
No 28
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.46 E-value=0.21 Score=36.00 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA 88 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~ 88 (99)
+++|+++++||-+. ++..-+..+...|.++++++|+ +.+++.+.++
T Consensus 6 ~l~gk~vlVvGgG~---va~rk~~~Ll~~ga~VtVvsp~---~~~~l~~l~~ 51 (205)
T TIGR01470 6 NLEGRAVLVVGGGD---VALRKARLLLKAGAQLRVIAEE---LESELTLLAE 51 (205)
T ss_pred EcCCCeEEEECcCH---HHHHHHHHHHHCCCEEEEEcCC---CCHHHHHHHH
Confidence 48899999999875 8999899999999999999995 3355544443
No 29
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.84 E-value=0.32 Score=34.89 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=37.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHh
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVAS 89 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~ 89 (99)
+++|+++.++|.+. ++...+..+...|.++++++|+ +.+++.+.+.+
T Consensus 7 ~l~~k~vLVIGgG~---va~~ka~~Ll~~ga~V~VIs~~---~~~~l~~l~~~ 53 (202)
T PRK06718 7 DLSNKRVVIVGGGK---VAGRRAITLLKYGAHIVVISPE---LTENLVKLVEE 53 (202)
T ss_pred EcCCCEEEEECCCH---HHHHHHHHHHHCCCeEEEEcCC---CCHHHHHHHhC
Confidence 58999999999965 9999999999999999999983 44555444443
No 30
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.82 E-value=0.35 Score=35.69 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=37.3
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA 88 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~ 88 (99)
.++|+++..||.+. |+-.=+..+.++|.+|++++|+ +.+++.+.++
T Consensus 22 ~~~~~~VLVVGGG~---VA~RK~~~Ll~~gA~VtVVap~---i~~el~~l~~ 67 (223)
T PRK05562 22 LSNKIKVLIIGGGK---AAFIKGKTFLKKGCYVYILSKK---FSKEFLDLKK 67 (223)
T ss_pred ECCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEEcCC---CCHHHHHHHh
Confidence 37789999999976 8888888889999999999996 4566655444
No 31
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.08 E-value=0.46 Score=28.54 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=38.5
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCC---CHHH----HHHHHhcCCeEEE
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGM---PESI----QEFVASKGKQQEV 96 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~---~~~~----~~~a~~~g~~~~~ 96 (99)
+++++|.+. ++-.++..++.+|.+++++.+...-+ +++. .+.+++.|+++..
T Consensus 1 ~vvViGgG~---ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGF---IGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESSSH---HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECcCH---HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 588999865 88899999999999999999865533 4554 3446677766543
No 32
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.04 E-value=0.63 Score=34.90 Aligned_cols=56 Identities=29% Similarity=0.397 Sum_probs=34.8
Q ss_pred HHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHH----HHhcCCeEEEE
Q psy4411 33 EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF----VASKGKQQEVY 97 (99)
Q Consensus 33 e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~~~~~~ 97 (99)
-+.|+|.|++|.++||.. +-|++.+++.++.+++++ ++++.+++. |++.|.+++.+
T Consensus 38 ~~~gdL~gk~il~lGDDD----LtSlA~al~~~~~~I~Vv-----DiDeRll~fI~~~a~~~gl~i~~~ 97 (243)
T PF01861_consen 38 AERGDLEGKRILFLGDDD----LTSLALALTGLPKRITVV-----DIDERLLDFINRVAEEEGLPIEAV 97 (243)
T ss_dssp HHTT-STT-EEEEES-TT-----HHHHHHHHT--SEEEEE------S-HHHHHHHHHHHHHHT--EEEE
T ss_pred HhcCcccCCEEEEEcCCc----HHHHHHHhhCCCCeEEEE-----EcCHHHHHHHHHHHHHcCCceEEE
Confidence 345889999999999965 478888888888887774 688887765 45667776543
No 33
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=92.92 E-value=0.95 Score=32.63 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=43.2
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
+.+.+.+|+-... ||...|++.+|..+|++++++.|++. ++.-.+.++..|+++...+
T Consensus 46 g~~~~~~vv~~ss---GN~g~alA~~a~~~g~~~~v~~p~~~--~~~~~~~~~~~Ga~v~~~~ 103 (244)
T cd00640 46 GKLPKGVIIESTG---GNTGIALAAAAARLGLKCTIVMPEGA--SPEKVAQMRALGAEVVLVP 103 (244)
T ss_pred CCCCCCEEEEeCC---cHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHCCCEEEEEC
Confidence 3333445444433 34899999999999999999999875 5666778888898887654
No 34
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.76 E-value=0.66 Score=36.78 Aligned_cols=56 Identities=11% Similarity=0.107 Sum_probs=43.0
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC---CCCCHHHHHHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN---LGMPESIQEFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~---~~~~~~~~~~a~~~g~~~~~ 96 (99)
..|++++.+|.++ ++-.++..+.++|.+|+++.... +......++.+++.|+++..
T Consensus 270 ~~gk~VvVIGgG~---~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 270 YAGKSVVVIGGGN---TAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred cCCCeEEEECCCH---HHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 3578999999874 89999999999999999998753 22334455678888887753
No 35
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.76 E-value=0.26 Score=34.04 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=32.6
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
+++|++|.++|-+. ++...+..+...|.++++++|+
T Consensus 10 ~l~~~~vlVvGGG~---va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGK---IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEEcCc
Confidence 58999999999865 9999999999999999999985
No 36
>PRK10717 cysteine synthase A; Provisional
Probab=92.46 E-value=0.49 Score=36.01 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=38.9
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.||.+.|++.+|+++|++++++.|++. ++.-++.++..|+++..++
T Consensus 72 sGN~g~alA~~a~~~G~~~~vv~p~~~--~~~k~~~~~~~GA~V~~~~ 117 (330)
T PRK10717 72 AGNTGIGLALVAAARGYKTVIVMPETQ--SQEKKDLLRALGAELVLVP 117 (330)
T ss_pred CcHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Confidence 345999999999999999999999874 5667788899999987664
No 37
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=92.44 E-value=1 Score=33.65 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=41.0
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.|.+|+-.-.+ |.+.|++..++++|++++++.|++. ++.-++..+..|+++..+.
T Consensus 56 ~g~~vv~aSsG---N~g~alA~~a~~~Gl~~~i~vp~~~--~~~k~~~~~~~GA~v~~~~ 110 (298)
T TIGR01139 56 PGKTIVEPTSG---NTGIALAMVAAARGYKLILTMPETM--SIERRKLLKAYGAELVLTP 110 (298)
T ss_pred CCCEEEEeCCC---hhHHHHHHHHHHcCCeEEEEeCCcc--CHHHHHHHHHcCCEEEEEC
Confidence 44555333333 4899999999999999999999874 3455677888898887653
No 38
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=92.44 E-value=0.61 Score=33.96 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=40.3
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g 91 (99)
+++|+++++||-+. |+.==+..+...|.++++++|+- .+++...+++.+
T Consensus 9 ~l~~k~VlvvGgG~---va~rKa~~ll~~ga~v~Vvs~~~---~~el~~~~~~~~ 57 (210)
T COG1648 9 DLEGKKVLVVGGGS---VALRKARLLLKAGADVTVVSPEF---EPELKALIEEGK 57 (210)
T ss_pred EcCCCEEEEECCCH---HHHHHHHHHHhcCCEEEEEcCCc---cHHHHHHHHhcC
Confidence 58999999999876 88778889999999999999976 566666555544
No 39
>PRK12831 putative oxidoreductase; Provisional
Probab=92.42 E-value=0.81 Score=36.56 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=42.3
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC-CCCH--HHHHHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL-GMPE--SIQEFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~-~~~~--~~~~~a~~~g~~~~~ 96 (99)
..|++|+++|.++ ++-..+..+.++|.+|++++.... +++. ..++.+++.|+.+..
T Consensus 279 ~~gk~VvVIGgG~---va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 279 KVGKKVAVVGGGN---VAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred cCCCeEEEECCcH---HHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 4678999999975 899999999999999999987543 2333 334557777877653
No 40
>PRK11761 cysM cysteine synthase B; Provisional
Probab=92.27 E-value=0.98 Score=34.07 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=42.8
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.|.+|+-.-. ||.+.|++..|+++|++++++.|+.. ++.-++.++..|+++...+
T Consensus 62 ~g~~vv~aSs---GN~g~alA~~a~~~G~~~~i~~p~~~--~~~k~~~~~~~GA~v~~~~ 116 (296)
T PRK11761 62 PGDTLIEATS---GNTGIALAMIAAIKGYRMKLIMPENM--SQERRAAMRAYGAELILVP 116 (296)
T ss_pred CCCEEEEeCC---ChHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Confidence 3456655433 34899999999999999999999864 5666788888999887664
No 41
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=92.03 E-value=0.93 Score=31.74 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.|+++ +++|++++.+|..+. |.+.+..++..-|+.|+++....
T Consensus 27 L~~~~~~l~Gk~v~VvGrs~~--VG~Pla~lL~~~~atVt~~h~~T 70 (160)
T PF02882_consen 27 LEYYGIDLEGKKVVVVGRSNI--VGKPLAMLLLNKGATVTICHSKT 70 (160)
T ss_dssp HHHTT-STTT-EEEEE-TTTT--THHHHHHHHHHTT-EEEEE-TTS
T ss_pred HHhcCCCCCCCEEEEECCcCC--CChHHHHHHHhCCCeEEeccCCC
Confidence 45555 799999999999887 99999999999999999998765
No 42
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.93 E-value=2 Score=32.87 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=35.6
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.++++ +++|++++.+|.++. |.+-++.++..-|+.|+++.-
T Consensus 148 L~~~~i~l~Gk~vvVvGrs~~--VG~Pla~lL~~~gAtVtv~hs 189 (285)
T PRK14191 148 LKHYHIEIKGKDVVIIGASNI--VGKPLAMLMLNAGASVSVCHI 189 (285)
T ss_pred HHHhCCCCCCCEEEEECCCch--hHHHHHHHHHHCCCEEEEEeC
Confidence 45555 699999999999887 999999999999999999864
No 43
>PLN00011 cysteine synthase
Probab=91.88 E-value=0.66 Score=35.39 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=38.8
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
..||.+.|++.+++++|++++++.|+.. ++.-++.++..|+.+..++
T Consensus 76 SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~i~~~GA~V~~~~ 122 (323)
T PLN00011 76 TAGNTGIGLACIGAARGYKVILVMPSTM--SLERRIILRALGAEVHLTD 122 (323)
T ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEEC
Confidence 4445999999999999999999999874 4666778888898887653
No 44
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.62 E-value=1.4 Score=33.67 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=36.6
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.++++ +++|++++.+|.++- |.+-++.++...|+.|+++.-..
T Consensus 149 L~~~~i~l~Gk~vvViGrs~i--VGkPla~lL~~~~atVt~~hs~t 192 (285)
T PRK14189 149 LESIGIPLRGAHAVVIGRSNI--VGKPMAMLLLQAGATVTICHSKT 192 (285)
T ss_pred HHHcCCCCCCCEEEEECCCCc--cHHHHHHHHHHCCCEEEEecCCC
Confidence 45555 799999999999886 89999999999999999987543
No 45
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=91.57 E-value=0.78 Score=34.15 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=38.5
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
..||.++|++..|+++|++++++.|+. .++.-++.++..|+++..++
T Consensus 60 SsGN~g~alA~~a~~~G~~~~i~vp~~--~~~~k~~~~~~~Ga~v~~~~ 106 (291)
T cd01561 60 TSGNTGIGLAMVAAAKGYRFIIVMPET--MSEEKRKLLRALGAEVILTP 106 (291)
T ss_pred CCChHHHHHHHHHHHcCCeEEEEECCC--CCHHHHHHHHHcCCEEEEeC
Confidence 344599999999999999999999986 45666678888899887654
No 46
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=1.1 Score=34.26 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=43.2
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC-CCCCCCHHHHHHHHhc
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP-PNLGMPESIQEFVASK 90 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P-~~~~~~~~~~~~a~~~ 90 (99)
.+++++|+.+|.++ .+-.+++.+++++-+|++++. +.|...+..+++++++
T Consensus 140 ~~~~k~v~ViGgG~---sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~ 191 (305)
T COG0492 140 FFKGKDVVVIGGGD---SAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKN 191 (305)
T ss_pred cccCCeEEEEcCCH---HHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhc
Confidence 37788999999865 788999999999999999988 4677778888888877
No 47
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=91.46 E-value=1.5 Score=32.87 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=41.6
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
|.+|+-... ||.+.|++..|+++|++++++.|+.. ++.-.+.++..|+++..++
T Consensus 59 g~~vv~aSs---GN~g~alA~~a~~~G~~~~i~~p~~~--~~~k~~~~~~~GA~v~~v~ 112 (290)
T TIGR01138 59 GDVLIEATS---GNTGIALAMIAALKGYRMKLLMPDNM--SQERKAAMRAYGAELILVT 112 (290)
T ss_pred CCEEEEECC---ChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Confidence 445555333 34899999999999999999999874 4556677888999887653
No 48
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=91.40 E-value=1.3 Score=33.76 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=42.9
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
+.+|+-.+.+ |...|++.+|+++|++++++.|+. .++.-++.++..|+++....
T Consensus 51 ~~~vv~aSsG---N~g~alA~~a~~~G~~~~iv~p~~--~~~~k~~~l~~~GA~v~~~~ 104 (316)
T cd06448 51 CVHVVCSSGG---NAGLAAAYAARKLGVPCTIVVPES--TKPRVVEKLRDEGATVVVHG 104 (316)
T ss_pred CCeEEEeCCc---HHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHHcCCEEEEEC
Confidence 4566666653 389999999999999999999986 45666788888999887653
No 49
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.37 E-value=1.7 Score=33.24 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=38.2
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~ 77 (99)
.++++ +++|++++.+|.++- |.+-+..++.+-|+.|++|....-
T Consensus 148 L~~~~i~l~Gk~vvVvGrS~i--VGkPla~lL~~~~atVtichs~T~ 192 (284)
T PRK14170 148 IKSTGTQIEGKRAVVIGRSNI--VGKPVAQLLLNENATVTIAHSRTK 192 (284)
T ss_pred HHHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence 45566 799999999999887 999999999999999999998663
No 50
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=91.24 E-value=0.72 Score=34.81 Aligned_cols=46 Identities=20% Similarity=0.081 Sum_probs=38.4
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.||...|++.+++.+|++++++.|++. ++.-++.++..|+++..++
T Consensus 78 sGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~l~~~GA~Vi~~~ 123 (324)
T cd01563 78 TGNTSASLAAYAARAGIKCVVFLPAGK--ALGKLAQALAYGATVLAVE 123 (324)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEeCCC--CHHHHHHHHHcCCEEEEEC
Confidence 345999999999999999999999886 5666677888899887654
No 51
>PRK10637 cysG siroheme synthase; Provisional
Probab=91.23 E-value=0.94 Score=36.29 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=37.2
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHH
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA 88 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~ 88 (99)
+++|+++.+||-+. |+--=+..+..+|.++++++|+ +.+++.+.++
T Consensus 9 ~l~~~~vlvvGgG~---vA~rk~~~ll~~ga~v~visp~---~~~~~~~l~~ 54 (457)
T PRK10637 9 QLRDRDCLLVGGGD---VAERKARLLLDAGARLTVNALA---FIPQFTAWAD 54 (457)
T ss_pred EcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEcCC---CCHHHHHHHh
Confidence 58999999999975 8888888888899999999995 4566654443
No 52
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=91.22 E-value=0.8 Score=34.03 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=41.4
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.+|+..+. ||...|++..|+++|++++++.|++. +++-++.++..|.++..++
T Consensus 66 ~~iv~~ss---GN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~l~~~Ga~vi~~~ 118 (304)
T cd01562 66 KGVVAASA---GNHAQGVAYAAKLLGIPATIVMPETA--PAAKVDATRAYGAEVVLYG 118 (304)
T ss_pred CcEEEECC---CHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcCCEEEEeC
Confidence 44555543 45999999999999999999999875 4556677888898887654
No 53
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.09 E-value=2 Score=32.76 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=38.0
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~ 77 (99)
.++++ +++|++++.+|..+- |.+-++.++..-|+.|++|+...-
T Consensus 147 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~atVtichs~T~ 191 (282)
T PRK14169 147 LDAYDIDVAGKRVVIVGRSNI--VGRPLAGLMVNHDATVTIAHSKTR 191 (282)
T ss_pred HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHHCCCEEEEECCCCC
Confidence 45555 799999999999887 999999999999999999987654
No 54
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.84 E-value=2.2 Score=32.64 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=37.9
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~ 77 (99)
.|+++ +++|++++.+|.++- |.+-+..++.+-|+.|++|....-
T Consensus 148 l~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~AtVtichs~T~ 192 (282)
T PRK14182 148 LDEARVDPKGKRALVVGRSNI--VGKPMAMMLLERHATVTIAHSRTA 192 (282)
T ss_pred HHHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence 45555 699999999999887 999999999999999999988654
No 55
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.83 E-value=2.2 Score=32.54 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=37.6
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~ 77 (99)
.|+++ +++|++++.+|..+- |.+-+..++..-|+.|++|.-...
T Consensus 149 L~~~~i~l~Gk~vvViGrS~~--VGkPla~lL~~~~AtVt~chs~T~ 193 (278)
T PRK14172 149 IKSLNIDIEGKEVVVIGRSNI--VGKPVAQLLLNENATVTICHSKTK 193 (278)
T ss_pred HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence 45555 699999999999887 999999999999999999986553
No 56
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.80 E-value=1.5 Score=35.26 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=47.3
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
..++|++|+.+-...- -.--|+..+...|++|.+++|.-+..++++.+.+.+.|+.+
T Consensus 44 ~pl~G~~i~~~~Hl~~--~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v 100 (425)
T PRK05476 44 KPLKGARIAGCLHMTI--QTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPV 100 (425)
T ss_pred CCCCCCEEEEEEeccc--cHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceE
Confidence 5699999999987654 34467778888999999999988889999998888888664
No 57
>PLN02565 cysteine synthase
Probab=90.74 E-value=1 Score=34.46 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 53 RTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 53 rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
|.+.|++..+..+|..++++.|++ .++.-++.++..|+++..+.
T Consensus 77 N~g~alA~~a~~~G~~~~ivvp~~--~~~~k~~~i~~~GA~V~~~~ 120 (322)
T PLN02565 77 NTGIGLAFMAAAKGYKLIITMPAS--MSLERRIILLAFGAELVLTD 120 (322)
T ss_pred hHHHHHHHHHHHcCCeEEEEeCCC--CcHHHHHHHHHcCCEEEEeC
Confidence 499999999999999999999987 56677788888898887653
No 58
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.72 E-value=1.6 Score=33.56 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=35.7
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.++++ +++|++|+++|-++. |.+-++..+.+-|.+|+++.-
T Consensus 150 L~~~~i~l~Gk~V~vIG~s~i--vG~PmA~~L~~~gatVtv~~~ 191 (301)
T PRK14194 150 LEDTCGDLTGKHAVVIGRSNI--VGKPMAALLLQAHCSVTVVHS 191 (301)
T ss_pred HHHhCCCCCCCEEEEECCCCc--cHHHHHHHHHHCCCEEEEECC
Confidence 45566 799999999999876 999999999999999999954
No 59
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.57 E-value=1.6 Score=33.33 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=36.8
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.++++ .++|++++.+|.+.. |.+.++.++...|++|+++.-..
T Consensus 149 l~~~~i~l~Gk~vvVIGrs~~--VG~pla~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 149 LKHADIDLEGKNAVVIGRSHI--VGQPVSKLLLQKNASVTILHSRS 192 (286)
T ss_pred HHHcCCCCCCCEEEEECCCch--hHHHHHHHHHHCCCeEEEEeCCc
Confidence 45555 799999999999886 99999999999999999998643
No 60
>PRK08246 threonine dehydratase; Provisional
Probab=90.38 E-value=0.98 Score=34.26 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=37.4
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
||.+.|++..|+++|++++++.|++ .++.-++.++..|+++..++
T Consensus 77 GN~g~a~A~~a~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~V~~~~ 121 (310)
T PRK08246 77 GNAGLAVAYAAAALGVPATVFVPET--APPAKVARLRALGAEVVVVG 121 (310)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCC--CcHHHHHHHHHCCCEEEEeC
Confidence 4599999999999999999999987 44556678888898887653
No 61
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=90.32 E-value=1.4 Score=30.09 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=36.6
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.++++ +++|++++++|..+. +..-++..+.+-|++++++.-..
T Consensus 19 l~~~~~~~~gk~v~VvGrs~~--vG~pla~lL~~~gatV~~~~~~t 62 (140)
T cd05212 19 LNKEGVRLDGKKVLVVGRSGI--VGAPLQCLLQRDGATVYSCDWKT 62 (140)
T ss_pred HHHcCCCCCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEeCCCC
Confidence 34555 799999999999886 99999999999999999998543
No 62
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.30 E-value=0.65 Score=32.31 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=31.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.+.|+||+++|=++ +.+..+..+.-|||+|....|..
T Consensus 33 ~l~g~tvgIiG~G~---IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 33 ELRGKTVGIIGYGR---IGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp -STTSEEEEESTSH---HHHHHHHHHHHTT-EEEEEESSC
T ss_pred ccCCCEEEEEEEcC---CcCeEeeeeecCCceeEEecccC
Confidence 59999999999854 99999999999999999999844
No 63
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.25 E-value=2.5 Score=32.34 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=37.8
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~ 77 (99)
.++++ +++|++++.+|..+. |.+-+..++..-|+.|++|+...-
T Consensus 146 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~aTVtichs~T~ 190 (287)
T PRK14173 146 LKHYGIPLAGKEVVVVGRSNI--VGKPLAALLLREDATVTLAHSKTQ 190 (287)
T ss_pred HHHcCCCCCCCEEEEECCCCc--cHHHHHHHHHHCCCEEEEeCCCCC
Confidence 45566 799999999999887 999999999999999999987553
No 64
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=90.19 E-value=1.8 Score=34.06 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=40.4
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
|.+|+-. ..||.+.|++.+|+++|++++++.|+. .+++-++..+..|+++..+
T Consensus 62 g~~vv~~---ssGN~g~alA~~a~~~G~~~~iv~p~~--~~~~k~~~~~~~GA~v~~~ 114 (454)
T TIGR01137 62 GDTIIEP---TSGNTGIGLALVAAIKGYKCIIVLPEK--MSNEKVDVLKALGAEIVRT 114 (454)
T ss_pred CCEEEEe---CCcHHHHHHHHHHHHcCCeEEEEeCCC--cCHHHHHHHHHCCCEEEEc
Confidence 4455544 334599999999999999999999986 3455667778888887654
No 65
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=90.14 E-value=2.3 Score=31.84 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=36.1
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
||.+.|++..++.+|++.+++-|+. .++.-++.++..|+++...
T Consensus 67 GN~g~alA~~a~~~G~~~~i~vp~~--~~~~k~~~~~~~GA~v~~~ 110 (299)
T TIGR01136 67 GNTGIALAMVAAAKGYKLILTMPET--MSLERRKLLRAYGAELILT 110 (299)
T ss_pred ChHHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHHHHcCCEEEEe
Confidence 3489999999999999999999987 3455567788888888764
No 66
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.96 E-value=0.6 Score=31.15 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=34.8
Q ss_pred HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCE-EEEECC
Q psy4411 32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVK-LNYVSP 74 (99)
Q Consensus 32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~-v~~~~P 74 (99)
++.+++++++++.++|-+. ++++.+..+...|.+ ++++.-
T Consensus 4 ~~~~~~l~~~~vlviGaGg---~ar~v~~~L~~~g~~~i~i~nR 44 (135)
T PF01488_consen 4 KKKFGDLKGKRVLVIGAGG---AARAVAAALAALGAKEITIVNR 44 (135)
T ss_dssp CTHHSTGTTSEEEEESSSH---HHHHHHHHHHHTTSSEEEEEES
T ss_pred HHhcCCcCCCEEEEECCHH---HHHHHHHHHHHcCCCEEEEEEC
Confidence 4568899999999999865 999999999999975 888875
No 67
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.52 E-value=3.2 Score=31.95 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=38.1
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~ 77 (99)
.|+++ +++|++++.+|..+- |.+-+..++..-|+.|++|+...-
T Consensus 149 L~~~~i~l~Gk~vvVIGrS~i--VGkPla~lL~~~~atVtv~hs~T~ 193 (297)
T PRK14186 149 LRSQQIDIAGKKAVVVGRSIL--VGKPLALMLLAANATVTIAHSRTQ 193 (297)
T ss_pred HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence 45566 799999999999887 999999999999999999987653
No 68
>PRK07476 eutB threonine dehydratase; Provisional
Probab=89.30 E-value=1.4 Score=33.43 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=37.3
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.||...|++..++++|++++++.|+.. ++.-.+.++..|+++..+.
T Consensus 75 sGN~g~alA~~a~~~G~~~~i~vp~~~--~~~k~~~~~~~GA~V~~~~ 120 (322)
T PRK07476 75 TGNHGRALAYAARALGIRATICMSRLV--PANKVDAIRALGAEVRIVG 120 (322)
T ss_pred CChHHHHHHHHHHHhCCCEEEEeCCCC--CHHHHHHHHHcCCEEEEEC
Confidence 345999999999999999999999764 4555677888898887653
No 69
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.22 E-value=3.2 Score=31.69 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=36.3
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.++++ +++|++++.+|.++- |.+-++.++..-|+.|++|.-..
T Consensus 148 L~~~~i~l~Gk~vvViGrS~~--VG~Pla~lL~~~~AtVti~hs~T 191 (281)
T PRK14183 148 LEEYEIDVKGKDVCVVGASNI--VGKPMAALLLNANATVDICHIFT 191 (281)
T ss_pred HHHcCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCC
Confidence 45555 799999999999887 99999999988899999887544
No 70
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.18 E-value=3.2 Score=31.95 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=35.9
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhC----CCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLY----DVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~----G~~v~~~~P~~ 76 (99)
.|+++ .++|++++.+|..+- |.+-++.++.+- ++.|++|.-..
T Consensus 148 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~~~~~aTVtvchs~T 195 (297)
T PRK14167 148 LAAAGVDTEGADVVVVGRSDI--VGKPMANLLIQKADGGNATVTVCHSRT 195 (297)
T ss_pred HHHhCCCCCCCEEEEECCCcc--cHHHHHHHHhcCccCCCCEEEEeCCCC
Confidence 45666 799999999999887 999999988876 79999987644
No 71
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.06 E-value=3.2 Score=31.81 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=36.9
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.|+++ +++|++++.+|-++. |.+-++.++...|+.|++|.-..
T Consensus 155 l~~~~i~l~Gk~vvViGrs~i--VGkPla~lL~~~~atVtv~hs~T 198 (287)
T PRK14176 155 LEEYGVDIEGKNAVIVGHSNV--VGKPMAAMLLNRNATVSVCHVFT 198 (287)
T ss_pred HHHcCCCCCCCEEEEECCCcc--cHHHHHHHHHHCCCEEEEEeccC
Confidence 45555 699999999999887 99999999999999999998643
No 72
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.06 E-value=3.7 Score=31.32 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=36.6
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.++++ +++|++++.+|..+. +.+-++.++...|.+|+++.-..
T Consensus 143 l~~~~i~l~Gk~V~ViGrs~~--vGrpla~lL~~~~atVtv~hs~t 186 (279)
T PRK14178 143 LHEYKISIAGKRAVVVGRSID--VGRPMAALLLNADATVTICHSKT 186 (279)
T ss_pred HHHcCCCCCCCEEEEECCCcc--ccHHHHHHHHhCCCeeEEEecCh
Confidence 45555 799999999999876 99999999999999999988643
No 73
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=88.96 E-value=1.7 Score=32.66 Aligned_cols=47 Identities=11% Similarity=0.011 Sum_probs=34.4
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
..||..+|++.+|+.+|++++++.|+...+. .-...++..|+.+.+.
T Consensus 65 ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~~~~~~Ga~v~~v 111 (311)
T TIGR01275 65 IQSNHARATALAAKKLGLDAVLVLREKEELN-GNLLLDKLMGAETRVY 111 (311)
T ss_pred chhHHHHHHHHHHHHhCCceEEEecCCccCC-CCHHHHHHcCCEEEEE
Confidence 3456999999999999999999999864322 2223356778877654
No 74
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.95 E-value=3.8 Score=31.39 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=36.1
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhC----CCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLY----DVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~----G~~v~~~~P~~ 76 (99)
.++++ +++|++++.+|..+- |.+-++.++.+- ++.|++|.-..
T Consensus 144 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~~~~~AtVtvchs~T 191 (287)
T PRK14181 144 LKYYEIPLHGRHVAIVGRSNI--VGKPLAALLMQKHPDTNATVTLLHSQS 191 (287)
T ss_pred HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHhCcCCCCCEEEEeCCCC
Confidence 45555 799999999999887 999999999887 79999987644
No 75
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=88.79 E-value=1 Score=33.13 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=36.7
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
||.+.+++.+|+.+|++++++.|+. .++.-.+.++..|+++..+
T Consensus 65 GN~g~a~A~~a~~~g~~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~ 108 (306)
T PF00291_consen 65 GNHGRALAYAAARLGLKCTIVVPED--VSPEKLKQMRALGAEVILV 108 (306)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEETT--SHHHHHHHHHHTTCEEEEE
T ss_pred CCceehhhhhhhhccccceeeeccc--cccccccceeeecceEEEc
Confidence 3599999999999999999999988 5556667788889877654
No 76
>PRK08198 threonine dehydratase; Provisional
Probab=88.78 E-value=2.6 Score=32.93 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=41.1
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
+.+|+-... ||.+.+++..|+++|++++++-|+.. ++.-++.++..|+++..+
T Consensus 70 ~~~vv~aSs---GN~g~alA~~a~~~G~~~~iv~p~~~--~~~k~~~~~~~GA~Vi~~ 122 (404)
T PRK08198 70 ARGVVAASA---GNHAQGVAYAASLLGIKATIVMPETA--PLSKVKATRSYGAEVVLH 122 (404)
T ss_pred CCEEEEECC---CHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHhCCCEEEEE
Confidence 445655554 34899999999999999999999874 455567788889888665
No 77
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=88.77 E-value=1.5 Score=34.31 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=39.0
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
..||...|++..|+.+|++++++.|+. .++.-.+.++..|+++...+
T Consensus 118 SsGN~G~alA~~a~~~G~~~~ivvp~~--~~~~k~~~lr~~GA~Vi~~~ 164 (368)
T PLN02556 118 TSGNMGISLAFMAAMKGYKMILTMPSY--TSLERRVTMRAFGAELVLTD 164 (368)
T ss_pred CCchHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHHcCCEEEEEC
Confidence 445599999999999999999999986 55666678888999987653
No 78
>PRK06815 hypothetical protein; Provisional
Probab=88.68 E-value=1.6 Score=33.09 Aligned_cols=46 Identities=13% Similarity=0.220 Sum_probs=37.8
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.||.+.+++..|+++|++++++.|+.. ++.-++.++..|+++..++
T Consensus 76 sGN~g~alA~~a~~~G~~~~i~~p~~~--~~~k~~~~~~~GA~V~~~~ 121 (317)
T PRK06815 76 SGNHGQGVALAAKLAGIPVTVYAPEQA--SAIKLDAIRALGAEVRLYG 121 (317)
T ss_pred CChHHHHHHHHHHHhCCCEEEEECCCC--CHHHHHHHHHCCCEEEEEC
Confidence 345999999999999999999999774 4556677888899887654
No 79
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.51 E-value=3.5 Score=31.53 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=34.9
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.++++ +++|++++++|-.+- |..-++..+.+-|.+|+++..+
T Consensus 149 L~~~~i~l~Gk~v~vIG~S~i--vG~Pla~lL~~~gatVtv~~s~ 191 (284)
T PRK14179 149 FREYNVELEGKHAVVIGRSNI--VGKPMAQLLLDKNATVTLTHSR 191 (284)
T ss_pred HHHhCCCCCCCEEEEECCCCc--CcHHHHHHHHHCCCEEEEECCC
Confidence 45555 699999999999775 8888888888999999998543
No 80
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.51 E-value=3.2 Score=31.71 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=36.9
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.++++ +++|++++.+|..+- |.+-++.++..-|+.|++|....
T Consensus 149 L~~~~i~l~Gk~vvViGrS~i--VG~Pla~lL~~~~atVt~chs~t 192 (284)
T PRK14190 149 LKEYNIDISGKHVVVVGRSNI--VGKPVGQLLLNENATVTYCHSKT 192 (284)
T ss_pred HHHcCCCCCCCEEEEECCCCc--cHHHHHHHHHHCCCEEEEEeCCc
Confidence 45555 799999999999887 99999999999999999987643
No 81
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.48 E-value=2.6 Score=33.74 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=46.6
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
.+|+|.+|+.+-...- -.--|+..+...|++|.++++.-+..++++.+.+.+.|+.+
T Consensus 32 ~p~~g~~i~~~~hl~~--~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v 88 (413)
T cd00401 32 KPLKGARIAGCLHMTV--QTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPV 88 (413)
T ss_pred CCCCCCEEEEEEcchH--HHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceE
Confidence 4699999999987653 34467777888899999999877888999998888888765
No 82
>PRK06352 threonine synthase; Validated
Probab=88.43 E-value=1.6 Score=33.77 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=36.2
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
.||...+++..++++|++++++-|+.. .++.-++.++..|+++..+
T Consensus 83 sGN~G~AlA~~aa~~G~~~~ivvp~~~-~~~~k~~~~~a~GA~V~~~ 128 (351)
T PRK06352 83 TGNTSAAAAAYATRAGLKAYIVIPEGK-VALGKLAQAVMYGADIISI 128 (351)
T ss_pred CcHHHHHHHHHHHHcCCcEEEEEeCCC-CcHHHHHHHHhcCCEEEEE
Confidence 345899999999999999999999865 3455556677888887654
No 83
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.42 E-value=4.1 Score=31.16 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=37.9
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~ 77 (99)
.|+++ +++|++++.+|..+- |.+-+..++..-|+.|++|....-
T Consensus 150 l~~y~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~atVt~chs~T~ 194 (284)
T PRK14177 150 LKEYGIDVTGKNAVVVGRSPI--LGKPMAMLLTEMNATVTLCHSKTQ 194 (284)
T ss_pred HHHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence 45555 799999999999887 999999999999999999997553
No 84
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=88.41 E-value=2.2 Score=31.24 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=30.4
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.++.+++|++.|-++ |.+.++..+..+|++++-++
T Consensus 27 ~~l~~~~v~I~G~G~---VG~~~a~~L~~~g~~vv~v~ 61 (227)
T cd01076 27 IGLAGARVAIQGFGN---VGSHAARFLHEAGAKVVAVS 61 (227)
T ss_pred CCccCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEE
Confidence 469999999999643 99999999999999998554
No 85
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=88.31 E-value=1.7 Score=33.60 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=39.1
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
.|+-... ||.++|++..|+++|++.+++-|+.. ++.-++.++..|+++..+
T Consensus 50 ~vv~aSs---GN~g~alA~~a~~~G~~~~iv~p~~~--~~~k~~~~~~~GA~V~~~ 100 (380)
T TIGR01127 50 GVVAASA---GNHAQGVAYAAKKFGIKAVIVMPESA--PPSKVKATKSYGAEVILH 100 (380)
T ss_pred EEEEECC---CHHHHHHHHHHHHcCCCEEEEEcCCC--cHHHHHHHHHCCCEEEEE
Confidence 3444444 34899999999999999999999864 455567788888888654
No 86
>PRK07048 serine/threonine dehydratase; Validated
Probab=88.29 E-value=1.7 Score=32.88 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=37.0
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
||.+.+++..++.+|++++++.|+.. ++.-++.++..|+++..++
T Consensus 81 GN~g~alA~~a~~~G~~~~vvvp~~~--~~~k~~~~~~~GAeV~~~~ 125 (321)
T PRK07048 81 GNHAQAIALSARLLGIPATIVMPQDA--PAAKVAATRGYGGEVVTYD 125 (321)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHCCCEEEEEC
Confidence 45999999999999999999999763 4556677888898887653
No 87
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=88.19 E-value=1.8 Score=33.22 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=29.5
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
++|++|+++|-++ +.++++..+...|+++++..++
T Consensus 1 l~~kkIgiIG~G~---mG~AiA~~L~~sG~~Viv~~~~ 35 (314)
T TIGR00465 1 LKGKTVAIIGYGS---QGHAQALNLRDSGLNVIVGLRK 35 (314)
T ss_pred CCcCEEEEEeEcH---HHHHHHHHHHHCCCeEEEEECc
Confidence 5789999999754 9999999999999988766553
No 88
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.19 E-value=3.8 Score=31.32 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=36.8
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.|+++ +++|++++.+|.++- |.+-++.++...|+.|++|.-..
T Consensus 150 l~~~~i~l~Gk~vvViGrs~i--VG~Pla~lL~~~~atVtv~hs~T 193 (285)
T PRK10792 150 LERYGIDTYGLNAVVVGASNI--VGRPMSLELLLAGCTVTVCHRFT 193 (285)
T ss_pred HHHcCCCCCCCEEEEECCCcc--cHHHHHHHHHHCCCeEEEEECCC
Confidence 45555 799999999999887 99999999999999999998643
No 89
>PLN02970 serine racemase
Probab=88.15 E-value=1.8 Score=33.13 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=37.0
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.||...|++..|+.+|++++++-|+.. ++.-.+.++..|+++..++
T Consensus 83 sGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~~~~~GA~Vi~~~ 128 (328)
T PLN02970 83 SGNHAAALALAAKLRGIPAYIVVPKNA--PACKVDAVIRYGGIITWCE 128 (328)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHhcCCEEEEeC
Confidence 345999999999999999999999874 4555567788888887653
No 90
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=88.04 E-value=4.4 Score=31.24 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.++++ +++|++++.+|..+- |.+-+..++..-|+.|++|.-..
T Consensus 158 L~~~~i~l~Gk~vvVIGRS~i--VGkPla~lL~~~~ATVtvchs~T 201 (299)
T PLN02516 158 LSRSGIPIKGKKAVVVGRSNI--VGLPVSLLLLKADATVTVVHSRT 201 (299)
T ss_pred HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHHCCCEEEEeCCCC
Confidence 34555 799999999999887 99999999999999999998754
No 91
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=87.98 E-value=3 Score=30.05 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=40.6
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC-CCCCCHHHHHHHHhc-CCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP-NLGMPESIQEFVASK-GKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~-~~~~~~~~~~~a~~~-g~~~~ 95 (99)
..+++++++|.+. ++-.++..++..+.+++++.+. .+...+.+.+.+++. |+++.
T Consensus 139 ~~~~~v~ViG~G~---~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~ 195 (300)
T TIGR01292 139 FKNKEVAVVGGGD---SAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFL 195 (300)
T ss_pred cCCCEEEEECCCh---HHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEE
Confidence 3578999999865 6666677778889999998873 455667777778776 76654
No 92
>PRK07409 threonine synthase; Validated
Probab=87.97 E-value=1.7 Score=33.42 Aligned_cols=48 Identities=15% Similarity=0.042 Sum_probs=37.5
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
..||...+++..++.+|++++++-|++. +++.-++.++..|+.+.+++
T Consensus 85 SsGN~g~alA~~a~~~G~~~~ivvP~~~-~~~~k~~~~~~~GA~Vi~~~ 132 (353)
T PRK07409 85 STGNTSASAAAYAARAGLKAFVLIPEGK-IALGKLAQAVMYGAEIIQID 132 (353)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEEcCCC-CchhhHHHHHhcCCEEEEEC
Confidence 3445899999999999999999999875 34444566677888887654
No 93
>PRK06381 threonine synthase; Validated
Probab=87.84 E-value=2.9 Score=31.54 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=37.7
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.||...|++..|+.+|++++++-|+.. ++.-++.++..|+++..+.
T Consensus 71 sGN~g~alA~~aa~~G~~~~ivvp~~~--~~~~~~~l~~~GA~V~~~~ 116 (319)
T PRK06381 71 CGNYGASIAYFARLYGLKAVIFIPRSY--SNSRVKEMEKYGAEIIYVD 116 (319)
T ss_pred CcHHHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHHcCCEEEEcC
Confidence 345999999999999999999999864 5566677888898887653
No 94
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=87.82 E-value=2.5 Score=33.93 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=37.7
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
||...|++..++.+|++++++-|++ .++.-++.++..|+.+.++.
T Consensus 161 GN~G~slA~~Aa~lG~~~~IvmP~~--a~~~K~~~ir~~GAeVv~~~ 205 (431)
T TIGR02035 161 GNLGLSIGIISAALGFQVTVHMSAD--AKQWKKDKLRSKGVTVVEYE 205 (431)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHHcCCEEEEEC
Confidence 3499999999999999999999987 56666677888898887653
No 95
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=87.67 E-value=3 Score=31.37 Aligned_cols=49 Identities=8% Similarity=-0.011 Sum_probs=35.7
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCC------HHHHHHHHhcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMP------ESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~------~~~~~~a~~~g~~~~~~~ 98 (99)
..||...|++.+|+.+|++++++.|+..... +.-...++..|.++..++
T Consensus 61 s~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~ 115 (307)
T cd06449 61 IQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVS 115 (307)
T ss_pred chhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEEC
Confidence 3456999999999999999999999764311 122345677788776553
No 96
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=87.62 E-value=3.6 Score=29.36 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=32.4
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
..++++++.++|-... +..+++..++..|.++++++..
T Consensus 3 ~~~~~k~~lItGa~~g--IG~~ia~~l~~~G~~vvi~~~~ 40 (261)
T PRK08936 3 SDLEGKVVVITGGSTG--LGRAMAVRFGKEKAKVVINYRS 40 (261)
T ss_pred cCCCCCEEEEeCCCCh--HHHHHHHHHHHCCCEEEEEeCC
Confidence 4688999999998664 9999999999999999887663
No 97
>PRK08329 threonine synthase; Validated
Probab=87.44 E-value=3.6 Score=31.69 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=40.1
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
.+|+....+ |.+.|++..++++|++++++.|+. .++.-+..++..|+++...
T Consensus 105 ~~vv~aSsG---N~g~alA~~aa~~G~~~~v~vp~~--~~~~k~~~~~~~GA~v~~v 156 (347)
T PRK08329 105 NEVVIDSSG---NAALSLALYSLSEGIKVHVFVSYN--ASKEKISLLSRLGAELHFV 156 (347)
T ss_pred CEEEEECCC---cHHHHHHHHHHHcCCcEEEEECCC--ChHHHHHHHHHcCCEEEEE
Confidence 455555543 489999999999999999999986 4555567778888888665
No 98
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.43 E-value=4.6 Score=31.09 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhC----CCEEEEECCCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLY----DVKLNYVSPPNL 77 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~----G~~v~~~~P~~~ 77 (99)
.++++ +++|++++.+|..+. |.+-++.++..- ++.|++|+-+.-
T Consensus 152 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~~~~~atVtv~hs~T~ 200 (297)
T PRK14168 152 LVRSGVETSGAEVVVVGRSNI--VGKPIANMMTQKGPGANATVTIVHTRSK 200 (297)
T ss_pred HHHhCCCCCCCEEEEECCCCc--ccHHHHHHHHhcccCCCCEEEEecCCCc
Confidence 35555 799999999999887 999999888876 789999876543
No 99
>PRK06608 threonine dehydratase; Provisional
Probab=87.31 E-value=2.1 Score=32.97 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=38.2
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
..||...+++..|+.+|++++++-|+.. ++.-++.++..|+++..+
T Consensus 79 SsGN~g~alA~~a~~~G~~~~vv~p~~~--~~~k~~~l~~~GA~V~~~ 124 (338)
T PRK06608 79 STGNHGQAVAYASKLFGIKTRIYLPLNT--SKVKQQAALYYGGEVILT 124 (338)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHhCCCEEEEE
Confidence 3456999999999999999999999874 556667788889988765
No 100
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.16 E-value=4.1 Score=31.25 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=34.6
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.|+++ +++|++|+++|.... +.+-++..+.+-|.+|+++.
T Consensus 149 l~~~~i~~~Gk~V~viGrs~~--mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 149 LRRVHGDLSGLNAVVIGRSNL--VGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred HHHhCCCCCCCEEEEEcCCcc--hHHHHHHHHHhCCCEEEEEC
Confidence 35544 799999999998776 99999999999999999995
No 101
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.16 E-value=5.2 Score=30.74 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=36.1
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhC----CCEEEEECCCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLY----DVKLNYVSPPNL 77 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~----G~~v~~~~P~~~ 77 (99)
.++++ +++|++++.+|..+- |.+-+..++..- ++.|++|.-...
T Consensus 148 L~~~~i~l~GK~vvViGrS~i--VGkPla~lL~~~~~~~~aTVtvchs~T~ 196 (293)
T PRK14185 148 LKRYHIETSGKKCVVLGRSNI--VGKPMAQLMMQKAYPGDCTVTVCHSRSK 196 (293)
T ss_pred HHHhCCCCCCCEEEEECCCcc--chHHHHHHHHcCCCCCCCEEEEecCCCC
Confidence 45555 699999999999887 999888888775 799999986554
No 102
>PRK07334 threonine dehydratase; Provisional
Probab=87.16 E-value=2.1 Score=33.64 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=37.0
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
||...+++..|+.+|++++++.|++. ++.-++.++..|+++..++
T Consensus 80 GN~g~alA~~a~~~G~~~~iv~p~~~--~~~k~~~~~~~GA~v~~~~ 124 (403)
T PRK07334 80 GNHAQGVAYHAQRLGIPATIVMPRFT--PTVKVERTRGFGAEVVLHG 124 (403)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcCCEEEEEC
Confidence 44899999999999999999999875 3555577888899887653
No 103
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.13 E-value=5.3 Score=30.65 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411 33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77 (99)
Q Consensus 33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~ 77 (99)
++++ +++|++++.+|..+- |.+-+..++..-|+.|++|.-+..
T Consensus 151 ~~y~i~l~GK~vvViGrS~i--VGkPla~lL~~~~ATVtichs~T~ 194 (288)
T PRK14171 151 KKYEPNLTGKNVVIIGRSNI--VGKPLSALLLKENCSVTICHSKTH 194 (288)
T ss_pred HHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCCC
Confidence 4444 699999999999887 999999999988999999987654
No 104
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.08 E-value=5.7 Score=30.37 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=36.9
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.|+++ +++|++++.+|-++. |.+-++.++..-|+.|++|.-..
T Consensus 148 L~~y~i~l~Gk~vvVvGrS~i--VGkPla~lL~~~~atVt~chs~T 191 (282)
T PRK14166 148 LKAYEIDLEGKDAVIIGASNI--VGRPMATMLLNAGATVSVCHIKT 191 (282)
T ss_pred HHHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEeCCCC
Confidence 45555 699999999999887 99999999998999999998644
No 105
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=87.04 E-value=2.2 Score=34.71 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=31.0
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.++|+|++|+||.. -+.|++..+..+||+++.++-+
T Consensus 311 ~L~GKrvai~Gdp~---~~i~LarfL~elGmevV~vgt~ 346 (457)
T CHL00073 311 LVRGKSVFFMGDNL---LEISLARFLIRCGMIVYEIGIP 346 (457)
T ss_pred HHCCCEEEEECCCc---HHHHHHHHHHHCCCEEEEEEeC
Confidence 48999999999965 7899999999999998877643
No 106
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=87.03 E-value=2.5 Score=32.16 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=37.8
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
..||...|++..++.+|++++++.|+.. ++.-++.++..|+++..++
T Consensus 74 SsGN~g~alA~~a~~~G~~~~v~~p~~~--~~~k~~~~~~~GA~V~~~~ 120 (317)
T TIGR02991 74 STGNHGRALAYAAAEEGVRATICMSELV--PQNKVDEIRRLGAEVRIVG 120 (317)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEcCCCC--CHHHHHHHHHcCCEEEEeC
Confidence 3456999999999999999999999874 4555677788888887653
No 107
>PRK13243 glyoxylate reductase; Reviewed
Probab=86.98 E-value=1.5 Score=33.68 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=32.0
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.|+||+++|=++ +.++++..+..||++|....|.
T Consensus 147 ~L~gktvgIiG~G~---IG~~vA~~l~~~G~~V~~~d~~ 182 (333)
T PRK13243 147 DVYGKTIGIIGFGR---IGQAVARRAKGFGMRILYYSRT 182 (333)
T ss_pred CCCCCEEEEECcCH---HHHHHHHHHHHCCCEEEEECCC
Confidence 48899999999854 9999999999999999988873
No 108
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.87 E-value=4.1 Score=31.20 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=36.4
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhh----CCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTL----YDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~----~G~~v~~~~P~~ 76 (99)
.++++ +++|++++.+|..+- |.+-+..++.. -+++|+++....
T Consensus 148 L~~~~i~l~Gk~vvViGrS~i--VG~Pla~lL~~~~~~~~AtVt~~hs~t 195 (286)
T PRK14184 148 LERYGLSPAGKKAVVVGRSNI--VGKPLALMLGAPGKFANATVTVCHSRT 195 (286)
T ss_pred HHHhCCCCCCCEEEEECCCcc--chHHHHHHHhCCcccCCCEEEEEeCCc
Confidence 45555 799999999999887 99999999988 789999998654
No 109
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=86.86 E-value=2.4 Score=33.27 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=36.4
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
||.+.|++..++++|++.+++-|+. .++.-++.++..|+++..++
T Consensus 103 GN~g~a~A~~Aa~~G~~~~I~vP~~--~~~~k~~~i~~~GAeVi~v~ 147 (376)
T TIGR01747 103 GNHGRGVAWAAQQLGQKAVVYMPKG--SAQERVENILNLGAECTITD 147 (376)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHhCCCEEEEEC
Confidence 3499999999999999999999986 34555677778888876653
No 110
>PRK08638 threonine dehydratase; Validated
Probab=86.74 E-value=2.3 Score=32.67 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=36.5
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
||...|++..|+.+|++++++.|+.. ++.-++.++..|+++..+
T Consensus 84 GN~g~alA~~aa~~G~~~~iv~p~~~--~~~k~~~~~~~GA~V~~~ 127 (333)
T PRK08638 84 GNHAQGVALSCALLGIDGKVVMPKGA--PKSKVAATCGYGAEVVLH 127 (333)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeCCCC--cHHHHHHHHHcCCEEEEE
Confidence 34999999999999999999999874 455567788888888654
No 111
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.72 E-value=4.3 Score=32.09 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=41.4
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCCC-CC--CHHHHHHHHhcCCeEEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPNL-GM--PESIQEFVASKGKQQEV 96 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~-~~--~~~~~~~a~~~g~~~~~ 96 (99)
.+.+|+++|.++ ++-.++..+.++|. +|+++..... .+ .+...+.+++.|+++..
T Consensus 272 ~g~~VvViGgG~---~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 272 VGKRVVVIGGGN---TAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred CCCeEEEECCCH---HHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence 578999999864 88888888899998 8999987432 22 34456778888877653
No 112
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=86.54 E-value=1.6 Score=34.52 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=32.5
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.|+||+++|=++ +.+.++..+..||+++...-|+
T Consensus 113 ~l~gktvGIIG~G~---IG~~va~~l~a~G~~V~~~Dp~ 148 (381)
T PRK00257 113 DLAERTYGVVGAGH---VGGRLVRVLRGLGWKVLVCDPP 148 (381)
T ss_pred CcCcCEEEEECCCH---HHHHHHHHHHHCCCEEEEECCc
Confidence 59999999999865 9999999999999999999874
No 113
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=86.53 E-value=1.8 Score=32.99 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=32.2
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.|+|++++|=++ +.+..+..+.-|||+|....|.
T Consensus 142 ~L~gktvGIiG~G~---IG~~vA~~~~~fgm~V~~~d~~ 177 (311)
T PRK08410 142 EIKGKKWGIIGLGT---IGKRVAKIAQAFGAKVVYYSTS 177 (311)
T ss_pred ccCCCEEEEECCCH---HHHHHHHHHhhcCCEEEEECCC
Confidence 48999999999864 9999999999999999988874
No 114
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.47 E-value=6.2 Score=30.34 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=37.0
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.++++ +++|++++.+|..+- |.+-+..++..-|+.|++|+-..
T Consensus 151 L~~~~i~l~Gk~vvViGrS~i--VGkPla~lL~~~~aTVt~chs~T 194 (294)
T PRK14187 151 IKTITRNLSGSDAVVIGRSNI--VGKPMACLLLGENCTVTTVHSAT 194 (294)
T ss_pred HHHhCCCCCCCEEEEECCCcc--chHHHHHHHhhCCCEEEEeCCCC
Confidence 34455 799999999999887 99999999999999999998754
No 115
>PRK06721 threonine synthase; Reviewed
Probab=86.30 E-value=2.8 Score=32.36 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=37.1
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.||...+++..++++|++++++-|++- .++.-.+.++..|+++..++
T Consensus 83 sGN~G~alA~~aa~~G~~~~vvvp~~~-~~~~k~~~~~~~GA~V~~~~ 129 (352)
T PRK06721 83 TGNTSASAAAYAARLGMKCIIVIPEGK-IAHGKLAQAVAYGAEIISIE 129 (352)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEECCCC-CCHHHHHHHHHcCCEEEEEC
Confidence 445899999999999999999999864 34455566788898887653
No 116
>PRK07591 threonine synthase; Validated
Probab=86.27 E-value=3.5 Score=32.72 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=37.5
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
..||...|++..++++|++++++.|++ .++.-+..++..|+++...+
T Consensus 144 SsGN~g~alA~~aa~~Gl~~~I~vP~~--~~~~k~~~~~~~GA~Vi~v~ 190 (421)
T PRK07591 144 STGNLANSVAAHAARAGLDSCVFIPAD--LEAGKIVGTLVYGPTLVAVD 190 (421)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEcCC--CCHHHHHHHHHcCCEEEEEC
Confidence 345699999999999999999999986 44555577788888886653
No 117
>PLN02356 phosphateglycerate kinase
Probab=86.22 E-value=2.4 Score=34.09 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=37.6
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
..||.+.|++.+|+.+|++++++.|+.. +++-.+.++..|+++...
T Consensus 111 SSGN~g~alA~~aa~~G~~~~ivvP~~~--s~~K~~~ir~~GAeVi~v 156 (423)
T PLN02356 111 SAGSTAISLATVAPAYGCKCHVVIPDDV--AIEKSQILEALGATVERV 156 (423)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCCC--cHHHHHHHHHcCCEEEEE
Confidence 3345899999999999999999999864 455567888899998765
No 118
>PRK05638 threonine synthase; Validated
Probab=86.17 E-value=2.3 Score=33.85 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=37.6
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
..||.+.|++..++++|++++++-|+. .++.-++.++..|+++...
T Consensus 119 SsGN~g~alA~~aa~~G~~~~i~vp~~--~~~~k~~~~~~~GA~vi~v 164 (442)
T PRK05638 119 SDGNAAASVAAYSARAGKEAFVVVPRK--VDKGKLIQMIAFGAKIIRY 164 (442)
T ss_pred CCChHHHHHHHHHHHcCCCEEEEEeCC--CCHHHHHHHHhcCcEEEEE
Confidence 345699999999999999999999986 4555567788888888654
No 119
>PRK06110 hypothetical protein; Provisional
Probab=85.91 E-value=3 Score=31.71 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=36.2
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
.||...|++..|+++|++++++.|+.. ++.-.+..+..|+++..+
T Consensus 78 sGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~i~~~GA~V~~~ 122 (322)
T PRK06110 78 RGNHGQSVAFAARRHGLAATIVVPHGN--SVEKNAAMRALGAELIEH 122 (322)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHHHHHHcCCEEEEE
Confidence 456999999999999999999999875 334446678888888655
No 120
>PRK06450 threonine synthase; Validated
Probab=85.88 E-value=2.8 Score=32.42 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=37.1
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
||...|++..++.+|++.+++-|++ .++.-+++++..|+++...
T Consensus 106 GN~g~slA~~aa~~G~~~~i~vP~~--~~~~k~~~i~~~GA~vi~v 149 (338)
T PRK06450 106 GNAGASIAAYGAAAGIEVKIFVPET--ASGGKLKQIESYGAEVVRV 149 (338)
T ss_pred cHHHHHHHHHHHHcCCCEEEEEcCC--CCHHHHHHHHHcCCEEEEE
Confidence 4599999999999999999999987 5666667788889888654
No 121
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=85.82 E-value=2.8 Score=33.43 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=37.3
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
.||...|++..++.+|++++++-|++ .++.-++..+..|+++..+
T Consensus 142 sGN~G~alA~~a~~~G~~~~IvvP~~--~~~~K~~~ira~GAeVv~v 186 (404)
T cd06447 142 TGNLGLSIGIMAAALGFKVTVHMSAD--AKQWKKDKLRSKGVTVVEY 186 (404)
T ss_pred ccHHHHHHHHHHHHcCCCEEEEECCC--CcHHHHHHHHHCCCEEEEE
Confidence 34599999999999999999999987 5666667788888888665
No 122
>PRK08197 threonine synthase; Validated
Probab=85.82 E-value=2.8 Score=32.87 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=36.2
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
||...|++..++++|++++++.|++. ++.-+++++..|+++...
T Consensus 136 GN~g~alA~~aa~~G~~~~v~vp~~~--~~~k~~~~~~~GA~Vi~v 179 (394)
T PRK08197 136 GNAGAAWAAYAARAGIRATIFMPADA--PEITRLECALAGAELYLV 179 (394)
T ss_pred cHHHHHHHHHHHHcCCcEEEEEcCCC--CHHHHHHHHHcCCEEEEE
Confidence 45999999999999999999999864 444567788888887654
No 123
>PLN03013 cysteine synthase
Probab=85.78 E-value=2.8 Score=33.79 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=38.2
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
||...+++..++.+|.+++++-|+. .+++-++.++..|+++...+
T Consensus 184 GN~G~ALA~~a~~~G~~~~VvvP~~--~s~~K~~~ira~GAeVi~v~ 228 (429)
T PLN03013 184 GNTGIGLAFIAASRGYRLILTMPAS--MSMERRVLLKAFGAELVLTD 228 (429)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCC--CcHHHHHHHHHcCCEEEEEC
Confidence 3499999999999999999999987 56777788888998887653
No 124
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.65 E-value=7.5 Score=29.73 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=36.4
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhh--CCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTL--YDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~--~G~~v~~~~P~~ 76 (99)
.++++ +++|++++.+|..+. |.+-+..++.+ -++.|++|.-+.
T Consensus 149 l~~~~i~l~Gk~vvViGrS~~--VGkPla~lL~~~~~~atVtvchs~T 194 (284)
T PRK14193 149 LRRYDVELAGAHVVVIGRGVT--VGRPIGLLLTRRSENATVTLCHTGT 194 (284)
T ss_pred HHHhCCCCCCCEEEEECCCCc--chHHHHHHHhhccCCCEEEEeCCCC
Confidence 45555 699999999999887 99999999988 689999998654
No 125
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=85.52 E-value=2.7 Score=32.68 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=31.4
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
..+++++|+++|=++ +.++++..+...|+++++..++
T Consensus 13 ~~L~gktIgIIG~Gs---mG~AlA~~L~~sG~~Vvv~~r~ 49 (330)
T PRK05479 13 SLIKGKKVAIIGYGS---QGHAHALNLRDSGVDVVVGLRE 49 (330)
T ss_pred hhhCCCEEEEEeeHH---HHHHHHHHHHHCCCEEEEEECC
Confidence 458899999999864 9999999999999998876553
No 126
>PRK06382 threonine dehydratase; Provisional
Probab=85.46 E-value=2.5 Score=33.25 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=35.7
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
||.+.+++.+|+++|++.+++.|+.. ++.-.+.++..|+++.++
T Consensus 82 GN~g~a~A~aa~~~G~~~~ivmp~~~--~~~k~~~~~~~GA~Vv~~ 125 (406)
T PRK06382 82 GNHAQGVAYAASINGIDAKIVMPEYT--IPQKVNAVEAYGAHVILT 125 (406)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHcCCEEEEE
Confidence 45899999999999999999999875 344456678888888654
No 127
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=85.38 E-value=2 Score=34.01 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=32.5
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.|+||+++|=++ +.+-++..+..|||++....|+
T Consensus 113 ~L~gktvGIIG~G~---IG~~vA~~l~a~G~~V~~~dp~ 148 (378)
T PRK15438 113 SLHDRTVGIVGVGN---VGRRLQARLEALGIKTLLCDPP 148 (378)
T ss_pred CcCCCEEEEECcCH---HHHHHHHHHHHCCCEEEEECCc
Confidence 58999999999865 9999999999999999999874
No 128
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=85.32 E-value=4.2 Score=35.70 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=41.8
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC-CCC--HHHHHHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL-GMP--ESIQEFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~-~~~--~~~~~~a~~~g~~~~~ 96 (99)
..|++|+.||.++ ++-..+..+.++|.+|++++.... ++| +..++.+.+.|+++..
T Consensus 445 ~~Gk~VvVIGGG~---tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~ 503 (944)
T PRK12779 445 VKGKEVFVIGGGN---TAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAV 503 (944)
T ss_pred cCCCEEEEECCCH---HHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEe
Confidence 3689999999975 999999999999999999986542 233 2334556677877644
No 129
>PRK14030 glutamate dehydrogenase; Provisional
Probab=85.30 E-value=3.2 Score=33.67 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=37.2
Q ss_pred HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEE--------ECCCCCCCC
Q psy4411 33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNY--------VSPPNLGMP 80 (99)
Q Consensus 33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~--------~~P~~~~~~ 80 (99)
++.| +++|+||++-|-+| |....+..+..+|++++. ..|.|+.++
T Consensus 220 ~~~g~~l~g~~vaIQGfGn---VG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~ 273 (445)
T PRK14030 220 ETKGIDIKGKTVAISGFGN---VAWGAATKATELGAKVVTISGPDGYIYDPDGISGE 273 (445)
T ss_pred HHcCCCcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHH
Confidence 4445 59999999999754 999999999999999999 578887653
No 130
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=85.21 E-value=3.2 Score=28.01 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=39.3
Q ss_pred ECCCCCchhHHHHHH--HHhhCCCEEEEEC-----------------CCCCCCCHHHHHHHHhcCCeEEEEeC
Q psy4411 46 VGDLKNGRTVHSLAR--LLTLYDVKLNYVS-----------------PPNLGMPESIQEFVASKGKQQEVYER 99 (99)
Q Consensus 46 vGd~~n~rv~~Sl~~--~~~~~G~~v~~~~-----------------P~~~~~~~~~~~~a~~~g~~~~~~~~ 99 (99)
.|+.+.-|..+.|.. +++.+|.+++++- ++++.+..++.++|.++|+++-.|+.
T Consensus 11 ~G~~~~~r~ya~f~~A~~a~smg~dV~iF~t~dG~~l~~K~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~ 83 (120)
T COG2044 11 SGPNNPERAYAPFVMATAAASMGYDVTIFFTMDGVTLVKKKVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQ 83 (120)
T ss_pred cCCCCHHHHHhHHHHHHHHHhCCCceEEEEEeccceeeeecchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcc
Confidence 377665566666554 4556787877654 46777888999999999999887763
No 131
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=85.09 E-value=2.9 Score=33.06 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=35.6
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
||.+.|++..|+++|++++++-|+.. ++.-++.++..|+.+..+
T Consensus 122 GN~g~alA~~aa~~Gi~~~IvvP~~~--~~~K~~~ir~~GAeVi~~ 165 (396)
T TIGR03528 122 GNHGRGVAWAANQLGQKSVVYMPKGS--AQIRLENIRAEGAECTIT 165 (396)
T ss_pred cHHHHHHHHHHHHcCCCEEEEEeCCC--cHHHHHHHHhcCCEEEEE
Confidence 35999999999999999999999864 455556677888877655
No 132
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.89 E-value=5.5 Score=31.85 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=45.2
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
.+|+|++|+.+-...- -.--++..+...|++|.+++-.-+..++++.+.+.+.|+.+
T Consensus 28 ~pl~G~~i~~~~hl~~--~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v 84 (406)
T TIGR00936 28 KPLKGARIAACLHVTV--ETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPV 84 (406)
T ss_pred CCCCCCEEEEEEechH--HHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceE
Confidence 5699999999987643 33456677788899999997766888899988888888765
No 133
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=84.88 E-value=3.2 Score=32.72 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=36.1
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
..||...|++..|+++|++++++-|+.. ++.-++.++..|+++..+
T Consensus 123 SsGN~g~alA~~a~~~G~~~~Ivvp~~~--~~~k~~~i~~~GA~Vi~v 168 (399)
T PRK08206 123 TDGNHGRGVAWAAQQLGQKAVIYMPKGS--SEERVDAIRALGAECIIT 168 (399)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcCCEEEEe
Confidence 3445999999999999999999999874 344455677778877654
No 134
>PRK08526 threonine dehydratase; Provisional
Probab=84.86 E-value=3.2 Score=32.89 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
..||.+++++..|+++|++.+++-|+.. |+.-++..+..|+++..+
T Consensus 75 SaGNhg~avA~aa~~~Gi~~~IvmP~~~--p~~k~~~~r~~GA~Vv~~ 120 (403)
T PRK08526 75 SAGNHAQGVAISAKKFGIKAVIVMPEAT--PLLKVSGTKALGAEVILK 120 (403)
T ss_pred CccHHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHHHHHhCCCEEEEE
Confidence 3445999999999999999999999875 444446678888887654
No 135
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=84.82 E-value=4.5 Score=29.39 Aligned_cols=36 Identities=28% Similarity=0.209 Sum_probs=31.2
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+++|++|++.|=++ |.+.++..+...|..++.++-
T Consensus 19 ~~l~g~~vaIqGfGn---VG~~~a~~L~~~G~~vV~vsD 54 (217)
T cd05211 19 DSLEGLTVAVQGLGN---VGWGLAKKLAEEGGKVLAVSD 54 (217)
T ss_pred CCcCCCEEEEECCCH---HHHHHHHHHHHcCCEEEEEEc
Confidence 579999999999654 999999999999988777763
No 136
>PRK02991 D-serine dehydratase; Provisional
Probab=84.73 E-value=3.4 Score=33.28 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=37.1
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
||...|++.+++.+|++.+++-|++ .++.-++.++..|+++..+
T Consensus 166 GN~G~alA~aA~~~G~~~tIvvP~~--a~~~K~~~ir~~GAeVi~~ 209 (441)
T PRK02991 166 GNLGLSIGIMSAALGFKVTVHMSAD--ARQWKKDKLRSHGVTVVEY 209 (441)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHhCCCEEEEE
Confidence 3489999999999999999999976 5666667788888888665
No 137
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=84.64 E-value=4.3 Score=34.36 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=40.8
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCE-EEEECCCCC-CCCH--HHHHHHHhcCCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVK-LNYVSPPNL-GMPE--SIQEFVASKGKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~-v~~~~P~~~-~~~~--~~~~~a~~~g~~~~ 95 (99)
..|++|+++|.++ ++-..+..+.++|.+ |+++..... +++. ..++.+++.|+++.
T Consensus 568 ~~gk~VvVIGgG~---~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~ 626 (752)
T PRK12778 568 KFGKKVAVVGGGN---TAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFL 626 (752)
T ss_pred cCCCcEEEECCcH---HHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEE
Confidence 4578999999975 888899999999987 999987542 2332 33456777887764
No 138
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=84.64 E-value=5.5 Score=30.42 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=34.6
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCC------CHHHHHHHHhcCCeEEEE
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGM------PESIQEFVASKGKQQEVY 97 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~------~~~~~~~a~~~g~~~~~~ 97 (99)
..||.++|++..|+++|++++++.|+.... ++.-+...+..|+++...
T Consensus 75 s~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v 128 (337)
T TIGR01274 75 IQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLD 128 (337)
T ss_pred CcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEe
Confidence 345699999999999999999999875421 123334567778877654
No 139
>PRK08813 threonine dehydratase; Provisional
Probab=84.36 E-value=3.7 Score=32.09 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=36.5
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
.||...|++..|+.+|++.+++-|+. .++.-++.++..|+.+..+
T Consensus 89 sGN~G~alA~aa~~~Gi~~~IvvP~~--~~~~K~~~i~~~GAeVv~~ 133 (349)
T PRK08813 89 AGNHAQGVAWSAYRLGVQAITVMPHG--APQTKIAGVAHWGATVRQH 133 (349)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEcCC--CCHHHHHHHHHcCCEEEEE
Confidence 34599999999999999999999986 4556667778888877654
No 140
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.36 E-value=5 Score=31.81 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=40.6
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~ 95 (99)
.+++++++++|-+. +..+.+..+...|.+|+++-....+..+...+.+++.|+.+.
T Consensus 13 ~~~~~~v~viG~G~---~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~ 68 (480)
T PRK01438 13 DWQGLRVVVAGLGV---SGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVR 68 (480)
T ss_pred CcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEE
Confidence 47789999999865 777888999999999988754332233344566777787764
No 141
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.27 E-value=2.3 Score=32.73 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.|++|+++|=++ +.++++..+..+|++|....|.
T Consensus 143 ~l~g~~VgIIG~G~---IG~~vA~~L~~~G~~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGR---IGAATAKIYAGFGATITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEEeCC
Confidence 47889999999865 9999999999999999988863
No 142
>PRK06436 glycerate dehydrogenase; Provisional
Probab=84.26 E-value=2.5 Score=32.23 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=31.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.|++|+++|=++ +.+.++..+.-||+++....|.
T Consensus 119 ~L~gktvgIiG~G~---IG~~vA~~l~afG~~V~~~~r~ 154 (303)
T PRK06436 119 LLYNKSLGILGYGG---IGRRVALLAKAFGMNIYAYTRS 154 (303)
T ss_pred CCCCCEEEEECcCH---HHHHHHHHHHHCCCEEEEECCC
Confidence 58999999999865 8899999999999999998873
No 143
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=84.25 E-value=6.8 Score=30.87 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=31.6
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
..+.|+++++.||.. .+.|+...+..+||+++.++.+
T Consensus 270 ~~l~Gkrv~i~gd~~---~~~~l~~~L~elGm~~v~~~t~ 306 (407)
T TIGR01279 270 QLLRGKKIFFFGDNL---LELPLARFLKRCGMEVVECGTP 306 (407)
T ss_pred HhcCCCEEEEECCch---HHHHHHHHHHHCCCEEEEecCC
Confidence 348999999999965 7889999999999999888763
No 144
>PLN02629 powdery mildew resistance 5
Probab=84.12 E-value=0.98 Score=35.98 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=25.4
Q ss_pred hcCCCCcEEEEECCCCCchhHHHHHHHHhh
Q psy4411 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTL 64 (99)
Q Consensus 35 ~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~ 64 (99)
+..++|++++||||.-+-|-..||+.+++.
T Consensus 115 Le~~RgKrl~FVGDSL~RNQ~eSLvClL~~ 144 (387)
T PLN02629 115 LLKMKGKTVMFVGDSLGRNQWESLICLISS 144 (387)
T ss_pred HHHhcCCeEEEeccccchhHHHHHHHHhhc
Confidence 345899999999997665789999999877
No 145
>PRK06260 threonine synthase; Validated
Probab=83.99 E-value=3.5 Score=32.34 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=35.9
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
..||.+.|++..++++|++++++.|++. .++.-+.+++..|+++...
T Consensus 122 SsGN~g~alA~~aa~~G~~~~i~vP~~~-~~~~k~~~~~~~GA~vi~v 168 (397)
T PRK06260 122 STGNTSASLAAYAARAGLKCYVLLPAGK-VALGKLAQALLHGAKVLEV 168 (397)
T ss_pred CCcHHHHHHHHHHHHcCCcEEEEEeCCC-ccHHHHHHHHhcCCEEEEE
Confidence 4456999999999999999999999873 3444445566778877654
No 146
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=83.70 E-value=6.6 Score=29.95 Aligned_cols=49 Identities=8% Similarity=-0.008 Sum_probs=33.1
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCC------CHHHHHHHHhcCCeEEEEe
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGM------PESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~------~~~~~~~a~~~g~~~~~~~ 98 (99)
..||.++|++.+|+++|++++++-|+.... .+.-+...+..|+++..++
T Consensus 76 s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~ 130 (337)
T PRK12390 76 VQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVP 130 (337)
T ss_pred CccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeC
Confidence 445699999999999999999996543211 0112234566788877653
No 147
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=83.66 E-value=3.1 Score=30.29 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=32.0
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEE
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYV 72 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~ 72 (99)
+++|++++.+|.++- |.+-++.++..-|+.|++|
T Consensus 59 ~l~GK~vvVIGrS~i--VGkPla~lL~~~~AtVti~ 92 (197)
T cd01079 59 RLYGKTITIINRSEV--VGRPLAALLANDGARVYSV 92 (197)
T ss_pred CCCCCEEEEECCCcc--chHHHHHHHHHCCCEEEEE
Confidence 699999999999887 9999999999999999999
No 148
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=83.42 E-value=11 Score=26.47 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=31.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
+++|+++.+.|-... +...++..++.-|.+|++++..
T Consensus 2 ~~~~k~vlItGas~g--IG~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 2 SLEGKVALVTGANTG--LGQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CCCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEEcCc
Confidence 378899999998654 9999999999999999988753
No 149
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=83.38 E-value=7 Score=32.54 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=40.3
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCC---CCCCHHHHHHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPN---LGMPESIQEFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~---~~~~~~~~~~a~~~g~~~~~ 96 (99)
..|++|+++|.++ ++-..+..+.++|. +|+++.... +...+..++.+++.|+++..
T Consensus 466 ~~gk~VvVIGgG~---~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~ 525 (654)
T PRK12769 466 TAGLNVVVLGGGD---TAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEF 525 (654)
T ss_pred CCCCeEEEECCcH---HHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEe
Confidence 4678999999754 88888888888996 688876432 32345566778888887653
No 150
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=83.09 E-value=7.6 Score=30.76 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=31.4
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhh-CCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTL-YDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~-~G~~v~~~~P 74 (99)
..+.|+++++.||.. .+.|++..+.. +||+++.++.
T Consensus 286 ~~l~Gkrvai~g~~~---~~~~la~~L~eelGm~~v~v~t 322 (427)
T PRK02842 286 ELLRGKRVFFLPDSQ---LEIPLARFLSRECGMELVEVGT 322 (427)
T ss_pred hhcCCcEEEEECCch---hHHHHHHHHHHhCCCEEEEeCC
Confidence 348999999999865 78899999999 9999998876
No 151
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.00 E-value=4.8 Score=31.49 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=39.3
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
++++++++++|-+. +..+.+..++..|.+|+++.+...+.-++..+++.+.|.++
T Consensus 2 ~~~~k~v~iiG~g~---~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~ 56 (450)
T PRK14106 2 ELKGKKVLVVGAGV---SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIEL 56 (450)
T ss_pred CcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEE
Confidence 36789999999654 77899999999999999998854322233334455556554
No 152
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=82.89 E-value=3.9 Score=32.77 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=36.2
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHHHhcCCeEEEE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a~~~g~~~~~~ 97 (99)
||...|++.+|+++|++++++-|+. +...+.-....+..|+++..+
T Consensus 136 GN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~ 182 (427)
T PRK12391 136 GQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPS 182 (427)
T ss_pred hHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEE
Confidence 3489999999999999999999963 444555556778889888765
No 153
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=82.83 E-value=4 Score=32.58 Aligned_cols=45 Identities=7% Similarity=-0.057 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHHHhcCCeEEEE
Q psy4411 53 RTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 53 rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a~~~g~~~~~~ 97 (99)
|...|++.+|+++|++++++-|+. +...+.-....+..|+++..+
T Consensus 128 N~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~ 173 (419)
T TIGR01415 128 QWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPS 173 (419)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEE
Confidence 489999999999999999999974 333444456678888888655
No 154
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.81 E-value=5.5 Score=30.43 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=36.8
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.|+++ +++|++++.+|-.+- |.+-++.++..-|+.|++|.-..
T Consensus 149 L~~y~i~l~Gk~vvViGrS~~--VGkPla~lL~~~~ATVt~chs~T 192 (282)
T PRK14180 149 LREYGIKTEGAYAVVVGASNV--VGKPVSQLLLNAKATVTTCHRFT 192 (282)
T ss_pred HHHhCCCCCCCEEEEECCCCc--chHHHHHHHHHCCCEEEEEcCCC
Confidence 45555 799999999999887 99999999998899999998644
No 155
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.74 E-value=9.9 Score=28.22 Aligned_cols=58 Identities=9% Similarity=0.015 Sum_probs=40.1
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~ 95 (99)
.+++|+++.+.|-... +.+.++..+++-|.++++..-..-...+++.+.+++.|.++.
T Consensus 8 ~~l~~k~~lVTGas~g--IG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~ 65 (306)
T PRK07792 8 TDLSGKVAVVTGAAAG--LGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAV 65 (306)
T ss_pred cCCCCCEEEEECCCCh--HHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEE
Confidence 4688999999998765 999999999999999988754221122334444555555443
No 156
>PLN02928 oxidoreductase family protein
Probab=82.72 E-value=3.1 Score=32.24 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=31.9
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.|+|++++|=++ +.+..+..+.-|||+|....|.
T Consensus 156 ~l~gktvGIiG~G~---IG~~vA~~l~afG~~V~~~dr~ 191 (347)
T PLN02928 156 TLFGKTVFILGYGA---IGIELAKRLRPFGVKLLATRRS 191 (347)
T ss_pred CCCCCEEEEECCCH---HHHHHHHHHhhCCCEEEEECCC
Confidence 48999999999864 9999999999999999998763
No 157
>PRK06487 glycerate dehydrogenase; Provisional
Probab=82.67 E-value=3.2 Score=31.68 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=31.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.|+|++++|=++ +.+..+..+.-|||+|....|.
T Consensus 145 ~l~gktvgIiG~G~---IG~~vA~~l~~fgm~V~~~~~~ 180 (317)
T PRK06487 145 ELEGKTLGLLGHGE---LGGAVARLAEAFGMRVLIGQLP 180 (317)
T ss_pred ccCCCEEEEECCCH---HHHHHHHHHhhCCCEEEEECCC
Confidence 48899999999864 9999999999999999988764
No 158
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.53 E-value=3.3 Score=32.84 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=32.2
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.|+|++++|=++ +.+..+..+..|||+|....|.
T Consensus 148 ~L~gktvGIiG~G~---IG~~vA~~~~~fGm~V~~~d~~ 183 (409)
T PRK11790 148 EVRGKTLGIVGYGH---IGTQLSVLAESLGMRVYFYDIE 183 (409)
T ss_pred cCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEECCC
Confidence 48999999999864 9999999999999999998874
No 159
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=82.46 E-value=5 Score=31.83 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=37.7
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~ 77 (99)
.++++ +++|++++.||..+- |.+-+..++.+-|+.|++|+-+.-
T Consensus 222 L~~y~i~l~GK~vvVIGRS~i--VGkPLa~LL~~~~ATVTicHs~T~ 266 (364)
T PLN02616 222 LHRYNVEIKGKRAVVIGRSNI--VGMPAALLLQREDATVSIVHSRTK 266 (364)
T ss_pred HHHhCCCCCCCEEEEECCCcc--ccHHHHHHHHHCCCeEEEeCCCCC
Confidence 34455 699999999999887 999999999999999999987654
No 160
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=82.34 E-value=3.1 Score=32.58 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=31.3
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
..+.|+++++.||.. .+.|+...+..+||+++.++.
T Consensus 272 ~~l~Gkrv~i~g~~~---~~~~la~~L~elGm~vv~~~t 307 (396)
T cd01979 272 DLLRGKSIFFMGDNL---LEIPLARFLTRCGMIVVEVGT 307 (396)
T ss_pred HhhcCCEEEEECCch---HHHHHHHHHHHCCCEEEeeCC
Confidence 458999999999964 689999999999999988865
No 161
>PRK09224 threonine dehydratase; Reviewed
Probab=82.34 E-value=4.8 Score=32.82 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=35.2
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
||.+++++..|+++|++.+++-|+. .|+.-++.++..|+++..+
T Consensus 77 GNha~avA~aa~~lGi~~~IvmP~~--tp~~K~~~~r~~GA~Vi~~ 120 (504)
T PRK09224 77 GNHAQGVALSAARLGIKAVIVMPVT--TPDIKVDAVRAFGGEVVLH 120 (504)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHhCCCEEEEE
Confidence 4599999999999999999999975 3444456778888887654
No 162
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=82.17 E-value=1.6 Score=30.36 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=43.2
Q ss_pred hhccCEEEEccCCchhH---------------------HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 15 SGYADVIVLRHPEPGAV---------------------KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 15 s~y~D~iv~R~~~~~~~---------------------~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
+.-+|+|+.|...-..+ ..... -.+.+|+++|-.+ ....+..+...||+++....
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~-~~~~~Iavv~~~~---~~~~~~~~~~ll~~~i~~~~ 107 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAK-KYGPKIAVVGYPN---IIPGLESIEELLGVDIKIYP 107 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCC-CCTSEEEEEEESS----SCCHHHHHHHHT-EEEEEE
T ss_pred hcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHH-hcCCcEEEEeccc---ccHHHHHHHHHhCCceEEEE
Confidence 34489999997754444 12222 4458999999755 33556666677788887776
Q ss_pred CCCCCCCHHHHHHHHhcCCeE
Q psy4411 74 PPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 74 P~~~~~~~~~~~~a~~~g~~~ 94 (99)
-...+=-+..++++++.|.+.
T Consensus 108 ~~~~~e~~~~i~~~~~~G~~v 128 (176)
T PF06506_consen 108 YDSEEEIEAAIKQAKAEGVDV 128 (176)
T ss_dssp ESSHHHHHHHHHHHHHTT--E
T ss_pred ECCHHHHHHHHHHHHHcCCcE
Confidence 544321123455666666554
No 163
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=82.16 E-value=7.2 Score=29.40 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=36.2
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.||...+++..++++|++++++.|++. .++.-+...+..|+++..++
T Consensus 79 sGN~g~a~A~~a~~~g~~~~v~~p~~~-~s~~k~~~~~~~GA~Vi~~~ 125 (328)
T TIGR00260 79 TGNTGAAAAAYAGKAGVKVVILYPAGK-ISLGKLAQALGYNAEVVAID 125 (328)
T ss_pred CcHHHHHHHHHhccCCCcEEEEECCCC-CCHHHHHHHHhcCcEEEEec
Confidence 445999999999999999999999873 23555566677888876553
No 164
>PRK08628 short chain dehydrogenase; Provisional
Probab=82.12 E-value=10 Score=26.78 Aligned_cols=37 Identities=5% Similarity=-0.007 Sum_probs=31.0
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
+++|+++.+.|-... +...++..+++.|.++++++-+
T Consensus 4 ~l~~~~ilItGasgg--iG~~la~~l~~~G~~v~~~~r~ 40 (258)
T PRK08628 4 NLKDKVVIVTGGASG--IGAAISLRLAEEGAIPVIFGRS 40 (258)
T ss_pred CcCCCEEEEeCCCCh--HHHHHHHHHHHcCCcEEEEcCC
Confidence 578899999997554 9999999999999998887753
No 165
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=81.60 E-value=4.9 Score=32.82 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=35.5
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
.||.+++++.+|+++|++.+++-|+.. |+.-++.++..|+++..+
T Consensus 73 aGNha~~vA~aa~~~Gi~~~IvmP~~t--p~~Kv~~~r~~GA~Vvl~ 117 (499)
T TIGR01124 73 AGNHAQGVAFSAARLGLKALIVMPETT--PDIKVDAVRGFGGEVVLH 117 (499)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHhCCCEEEEe
Confidence 345999999999999999999999763 344456677888887654
No 166
>PLN02569 threonine synthase
Probab=81.54 E-value=6.2 Score=32.17 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=36.8
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
..||...|++..++.+|++++++.|++. +++.-+.+++..|+.+...
T Consensus 194 SSGN~GaAlAayaa~~Gl~~~I~vP~~~-~~~~k~~qi~a~GA~Vi~v 240 (484)
T PLN02569 194 STGDTSAALSAYCAAAGIPSIVFLPADK-ISIAQLVQPIANGALVLSI 240 (484)
T ss_pred CCcHHHHHHHHHHHhcCCeEEEEEcCCC-CCHHHHHHHHhcCCEEEEE
Confidence 3455899999999999999999999864 4545556677778777554
No 167
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=81.10 E-value=4.6 Score=31.66 Aligned_cols=46 Identities=7% Similarity=-0.172 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhhCCCEEEEECCCCCCCC-HHHHHHHHhcCCeEEEEe
Q psy4411 53 RTVHSLARLLTLYDVKLNYVSPPNLGMP-ESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 53 rv~~Sl~~~~~~~G~~v~~~~P~~~~~~-~~~~~~a~~~g~~~~~~~ 98 (99)
|...+++..|+++|++++++-|+.-.+. +.-+...+..|+++..++
T Consensus 109 N~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~ 155 (385)
T TIGR00263 109 QHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVT 155 (385)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEEC
Confidence 3899999999999999999999752121 123456788898887653
No 168
>PRK06932 glycerate dehydrogenase; Provisional
Probab=81.01 E-value=3.8 Score=31.27 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=31.2
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.|+|++++|=++ +.+..+..+.-|||+|....|.
T Consensus 144 ~l~gktvgIiG~G~---IG~~va~~l~~fg~~V~~~~~~ 179 (314)
T PRK06932 144 DVRGSTLGVFGKGC---LGTEVGRLAQALGMKVLYAEHK 179 (314)
T ss_pred ccCCCEEEEECCCH---HHHHHHHHHhcCCCEEEEECCC
Confidence 48899999999864 8999999999999999887763
No 169
>PRK08589 short chain dehydrogenase; Validated
Probab=80.95 E-value=9.9 Score=27.46 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=38.2
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
+.++++++.+.|-... +.+.++..++.-|.++++++.. +..++..+.+++.+.++
T Consensus 2 ~~l~~k~vlItGas~g--IG~aia~~l~~~G~~vi~~~r~--~~~~~~~~~~~~~~~~~ 56 (272)
T PRK08589 2 KRLENKVAVITGASTG--IGQASAIALAQEGAYVLAVDIA--EAVSETVDKIKSNGGKA 56 (272)
T ss_pred CCCCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEEeCc--HHHHHHHHHHHhcCCeE
Confidence 3577889999998664 9999999999999999988754 22233334444444443
No 170
>PLN02477 glutamate dehydrogenase
Probab=80.90 E-value=6.6 Score=31.45 Aligned_cols=38 Identities=26% Similarity=0.186 Sum_probs=31.7
Q ss_pred HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
+++| +++|++|++.|-++ |.+.++..+...|++++-++
T Consensus 198 ~~~g~~l~g~~VaIqGfGn---VG~~~A~~L~e~GakVVaVs 236 (410)
T PLN02477 198 AEHGKSIAGQTFVIQGFGN---VGSWAAQLIHEKGGKIVAVS 236 (410)
T ss_pred HHcCCCccCCEEEEECCCH---HHHHHHHHHHHcCCEEEEEE
Confidence 4455 59999999999644 99999999999999998554
No 171
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=80.85 E-value=9.1 Score=32.02 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=40.3
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCCC-CCC--HHHHHHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPNL-GMP--ESIQEFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~-~~~--~~~~~~a~~~g~~~~~ 96 (99)
..|++|+++|.++ ++-.++..+.++|. +|+++.+... .++ +..++++.+.|+++..
T Consensus 321 ~~gk~VvVIGgG~---~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~ 380 (652)
T PRK12814 321 HPGKKVVVIGGGN---TAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRE 380 (652)
T ss_pred cCCCeEEEECCCH---HHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEe
Confidence 4679999999875 88888888899996 6999887543 232 3344556667777643
No 172
>PLN03139 formate dehydrogenase; Provisional
Probab=80.82 E-value=3.3 Score=32.87 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.++|++|+++|= ||+.+..+..+..||+++....|.
T Consensus 196 ~L~gktVGIVG~---G~IG~~vA~~L~afG~~V~~~d~~ 231 (386)
T PLN03139 196 DLEGKTVGTVGA---GRIGRLLLQRLKPFNCNLLYHDRL 231 (386)
T ss_pred CCCCCEEEEEee---cHHHHHHHHHHHHCCCEEEEECCC
Confidence 489999999995 359999999999999999887663
No 173
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.73 E-value=3.7 Score=33.52 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=31.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+.|+||+++|=++ +.++++..+..|||++....|
T Consensus 135 ~l~gktvgIiG~G~---IG~~vA~~l~~fG~~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGR---IGSIVAKRAKAFGMKVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEECC
Confidence 48899999999865 999999999999999999887
No 174
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=80.73 E-value=9 Score=30.50 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=37.8
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCCCCCCHH-------------HHHHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPNLGMPES-------------IQEFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~~~~~~-------------~~~~a~~~g~~~~~ 96 (99)
..+++|++||.++ ++-.++..+.+.|. +|+...+......+. .++.+++.|+.+..
T Consensus 279 ~~gk~VvVIGgG~---~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~ 348 (471)
T PRK12810 279 AKGKHVVVIGGGD---TGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREF 348 (471)
T ss_pred CCCCEEEEECCcH---HHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEe
Confidence 4578999999975 88888877788886 788766543322221 35667777766643
No 175
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.69 E-value=13 Score=26.43 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=31.6
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.++++++.+.|-... +...++..++..|.++.+++-.
T Consensus 12 ~l~~k~vlItGas~g--IG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTG--LGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEEeCC
Confidence 578899999998665 9999999999999998887653
No 176
>PRK06701 short chain dehydrogenase; Provisional
Probab=80.52 E-value=13 Score=27.43 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=32.7
Q ss_pred hcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 35 ~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.++++++.+.|.... +..+++..+++.|.++.+++-.
T Consensus 41 ~~~~~~k~iLItGasgg--IG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 41 SGKLKGKVALITGGDSG--IGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred ccCCCCCEEEEeCCCcH--HHHHHHHHHHHCCCEEEEEeCC
Confidence 35688899999997665 9999999999999999888654
No 177
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=80.52 E-value=4.5 Score=30.81 Aligned_cols=48 Identities=8% Similarity=-0.051 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHhhCCCEEEEECCCCCCCC------HHHHHHHHhcCCeEEEEe
Q psy4411 51 NGRTVHSLARLLTLYDVKLNYVSPPNLGMP------ESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 51 n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~------~~~~~~a~~~g~~~~~~~ 98 (99)
.||...+++.+|+.+|.+++++.|+..... +.-...++..|+++....
T Consensus 74 ~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~ 127 (331)
T PRK03910 74 QSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVP 127 (331)
T ss_pred hhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeC
Confidence 346999999999999999999999765321 122345677888876553
No 178
>PRK09414 glutamate dehydrogenase; Provisional
Probab=80.38 E-value=5.8 Score=32.14 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=32.6
Q ss_pred HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
++++ +++|+||++.|=++ |...++..+..+|++|+.++
T Consensus 224 ~~~~~~l~g~rVaIqGfGn---VG~~~A~~L~~~GakVVavs 262 (445)
T PRK09414 224 KARGDSFEGKRVVVSGSGN---VAIYAIEKAQQLGAKVVTCS 262 (445)
T ss_pred HhcCCCcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEE
Confidence 3444 59999999999854 99999999999999999885
No 179
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=80.07 E-value=6.4 Score=26.79 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=36.8
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGM 79 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~ 79 (99)
..++|++++.+=.-+.-|+-.|+-.++.++|.+++...|....+
T Consensus 35 ~~l~gk~v~~lF~e~StRTR~SFe~A~~~LGg~~i~~~~~~s~~ 78 (142)
T PF02729_consen 35 QLLKGKTVALLFFEPSTRTRLSFEAAANRLGGHVIYLDPSTSSL 78 (142)
T ss_dssp TTTTTCEEEEEESS--HHHHHHHHHHHHHTTCEEEEEETTTSST
T ss_pred ccCCCCEEEEEecCCCchhhhhHHHhhhcceeEEEEECcccccC
Confidence 35999999988766666899999999999999999999987766
No 180
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.01 E-value=3.3 Score=31.37 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=35.4
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.++++ .++|++++.+|-+.- +.+.++.++...|++|+++.-+
T Consensus 150 L~~~~i~l~Gk~vvViG~gg~--vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 150 LKAYNIELAGKHAVVVGRSAI--LGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred HHHcCCCCCCCEEEEECCcHH--HHHHHHHHHHhCCCEEEEEeCC
Confidence 34454 699999999999875 9999999999999999998764
No 181
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=79.95 E-value=4 Score=30.65 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=30.6
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.+++|+||++.|=++ |.+..+..+..+|++++-++
T Consensus 34 ~~l~g~~vaIqGfGn---VG~~~a~~L~e~GakvvaVs 68 (254)
T cd05313 34 ETLKGKRVAISGSGN---VAQYAAEKLLELGAKVVTLS 68 (254)
T ss_pred CCcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEE
Confidence 369999999999865 99999999999999999554
No 182
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=79.77 E-value=4 Score=33.35 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=31.6
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+.|+||+++|=++ +.++++..+..|||++....|
T Consensus 137 ~l~gktvgIiG~G~---IG~~vA~~l~~fG~~V~~~d~ 171 (526)
T PRK13581 137 ELYGKTLGIIGLGR---IGSEVAKRAKAFGMKVIAYDP 171 (526)
T ss_pred ccCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEECC
Confidence 37899999999864 999999999999999999887
No 183
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=79.69 E-value=4.2 Score=31.11 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=31.1
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.++|+||+++|=++ +.+..+..+..|||++....|
T Consensus 133 ~l~g~tvgIvG~G~---IG~~vA~~l~afG~~V~~~~~ 167 (312)
T PRK15469 133 HREDFTIGILGAGV---LGSKVAQSLQTWGFPLRCWSR 167 (312)
T ss_pred CcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 48899999999865 899999999999999988876
No 184
>PLN02550 threonine dehydratase
Probab=79.45 E-value=6.2 Score=33.13 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=36.8
Q ss_pred CCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 50 KNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 50 ~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
..||.+++++..|+++|++.+++-|+.. |+.-++..+..|+++..+
T Consensus 164 SaGNhAqgvA~aA~~lGika~IvmP~~t--p~~Kv~~~r~~GAeVvl~ 209 (591)
T PLN02550 164 SAGNHAQGVALSAQRLGCDAVIAMPVTT--PEIKWQSVERLGATVVLV 209 (591)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcCCEEEEe
Confidence 4456999999999999999999999874 344456677888887665
No 185
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=79.27 E-value=4.5 Score=31.08 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=30.6
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHh-hCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLT-LYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~-~~G~~v~~~~P~ 75 (99)
.+.|+|++++|=++ +.+..+..+. -|||+|....|.
T Consensus 142 ~L~gktvGIiG~G~---IG~~va~~l~~~fgm~V~~~~~~ 178 (323)
T PRK15409 142 DVHHKTLGIVGMGR---IGMALAQRAHFGFNMPILYNARR 178 (323)
T ss_pred CCCCCEEEEEcccH---HHHHHHHHHHhcCCCEEEEECCC
Confidence 48999999999854 8999998887 899999887763
No 186
>PRK12483 threonine dehydratase; Reviewed
Probab=79.21 E-value=6.6 Score=32.34 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=35.3
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
||.+++++..|+.+|++.+++-|+.. |+.-++..+..|+++..+
T Consensus 94 GNha~gvA~aA~~lGi~~~IvmP~~t--p~~Kv~~~r~~GAeVil~ 137 (521)
T PRK12483 94 GNHAQGVALAAARLGVKAVIVMPRTT--PQLKVDGVRAHGGEVVLH 137 (521)
T ss_pred CHHHHHHHHHHHHhCCCEEEEECCCC--CHHHHHHHHHCCCEEEEE
Confidence 35899999999999999999999875 344456677888877654
No 187
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=79.19 E-value=11 Score=28.55 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=32.0
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
..+.+.+++++|-+ ++.+..+..+..+|++++++...
T Consensus 148 ~~l~g~kvlViG~G---~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 148 ITIHGSNVLVLGFG---RTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCCCCCEEEEECCc---HHHHHHHHHHHHCCCEEEEEECC
Confidence 46789999999975 49999999999999999988664
No 188
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=79.18 E-value=12 Score=30.51 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=41.5
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC------------CCCCCCHHHH----HHHHhcCCeEEE
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP------------PNLGMPESIQ----EFVASKGKQQEV 96 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P------------~~~~~~~~~~----~~a~~~g~~~~~ 96 (99)
.-.|.+|+++|-+. ..-+.+..++++|.+++++-. ++|.++.+++ +.+++.|+++.+
T Consensus 134 ~~~g~~V~VIGaGp---aGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTGKRVAVIGGGP---AGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCCCEEEEECCCH---HHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 34689999999975 778888889999999988853 2345555543 446777876644
No 189
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=79.14 E-value=4.9 Score=32.85 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=34.4
Q ss_pred CCCCcEEEEE--------------CCCCCchhHHHHHHHHhhCCCEEEEEC-CCCCCCC
Q psy4411 37 RVNGLTITMV--------------GDLKNGRTVHSLARLLTLYDVKLNYVS-PPNLGMP 80 (99)
Q Consensus 37 ~l~g~~i~~v--------------Gd~~n~rv~~Sl~~~~~~~G~~v~~~~-P~~~~~~ 80 (99)
+|+|++|.+. +....|++...++..+...|.+|++++ |-.+.+|
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~~p 311 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLADP 311 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCCCC
Confidence 5899998754 445568999999999999999999987 4344333
No 190
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=79.09 E-value=4.6 Score=31.21 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=31.9
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+.|+|++++|=++ +.+-.+..+.-|||++....|
T Consensus 139 el~gkTvGIiG~G~---IG~~va~~l~afgm~v~~~d~ 173 (324)
T COG0111 139 ELAGKTVGIIGLGR---IGRAVAKRLKAFGMKVIGYDP 173 (324)
T ss_pred cccCCEEEEECCCH---HHHHHHHHHHhCCCeEEEECC
Confidence 47799999999864 999999999999999999999
No 191
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=78.99 E-value=8.5 Score=29.33 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=41.3
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
..|+|.+|+.+=...- =.--|++.+...|++|.+++-.-+.-.+++.+.+.+.|+.+
T Consensus 39 kPl~G~rIa~cLHle~--kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V 95 (268)
T PF05221_consen 39 KPLKGARIAGCLHLEA--KTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPV 95 (268)
T ss_dssp -TTTTEEEEEES--SH--HHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEE
T ss_pred CCCCCCEEEEEEechH--HHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceE
Confidence 4699999998765432 33457888888999999999877888888888887777654
No 192
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=78.87 E-value=6.6 Score=31.95 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=29.9
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHh-hCCCEEEEECCC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLT-LYDVKLNYVSPP 75 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~-~~G~~v~~~~P~ 75 (99)
+.|++++++||.. .+.++..++. -+||+++.++..
T Consensus 293 l~Gkrv~I~gd~~---~a~~l~~~L~~ElG~~vv~~gt~ 328 (511)
T TIGR01278 293 LTGKRAFVFGDAT---HAVGMTKILARELGIHIVGAGTY 328 (511)
T ss_pred hcCCeEEEEcCcH---HHHHHHHHHHHhCCCEEEecCCc
Confidence 7899999999965 7889999998 699999887653
No 193
>PRK06114 short chain dehydrogenase; Provisional
Probab=78.79 E-value=16 Score=25.98 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=31.0
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
+++++++.+.|-..- +...++..++..|.++.++...
T Consensus 5 ~~~~k~~lVtG~s~g--IG~~ia~~l~~~G~~v~~~~r~ 41 (254)
T PRK06114 5 DLDGQVAFVTGAGSG--IGQRIAIGLAQAGADVALFDLR 41 (254)
T ss_pred CCCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEEeCC
Confidence 477889999997654 9999999999999999888753
No 194
>PRK12937 short chain dehydrogenase; Provisional
Probab=78.66 E-value=13 Score=25.92 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=29.4
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.++++++.+.|-... +.++++..+.+.|.+++++.
T Consensus 2 ~~~~~~vlItG~~~~--iG~~la~~l~~~g~~v~~~~ 36 (245)
T PRK12937 2 TLSNKVAIVTGASRG--IGAAIARRLAADGFAVAVNY 36 (245)
T ss_pred CCCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEec
Confidence 467889999998654 99999999999999987765
No 195
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=78.40 E-value=8.9 Score=26.02 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=38.8
Q ss_pred cEEEEECCCC--CchhHHHHHHHHhhCCCEEEEEC---CCCCCCCHHHHHHHHhcCCeEE
Q psy4411 41 LTITMVGDLK--NGRTVHSLARLLTLYDVKLNYVS---PPNLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 41 ~~i~~vGd~~--n~rv~~Sl~~~~~~~G~~v~~~~---P~~~~~~~~~~~~a~~~g~~~~ 95 (99)
.+|.||.-+| .|+++-.++.-.+.-++++.-++ .++-.+++..++.+++.|+++.
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~ 62 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDIS 62 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcC
Confidence 5788886543 34455555555444568888888 4677799999999999998775
No 196
>PRK14031 glutamate dehydrogenase; Provisional
Probab=78.36 E-value=4.4 Score=32.83 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=34.0
Q ss_pred HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++.| +++|+||++.|=+| |....+..+..+|++|+.+++
T Consensus 220 ~~~g~~l~g~rVaVQGfGN---VG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 220 KTKGTDLKGKVCLVSGSGN---VAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HhcCCCcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEC
Confidence 3445 69999999999865 999999999999999999887
No 197
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.27 E-value=4.8 Score=30.37 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=33.7
Q ss_pred HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
+..+ ++.|++++++|-+. +.++++..+..+|++++++...
T Consensus 143 ~~~~~~l~gk~v~IiG~G~---iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 143 EHTDFTIHGSNVMVLGFGR---TGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred HhcCCCCCCCEEEEEcChH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 4443 68999999999854 9999999999999999988763
No 198
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=78.09 E-value=9.5 Score=26.37 Aligned_cols=55 Identities=22% Similarity=0.252 Sum_probs=37.6
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEE--ECCCCCCCCHHH---HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNY--VSPPNLGMPESI---QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~--~~P~~~~~~~~~---~~~a~~~g~~~~ 95 (99)
..-++++|.+|||--.-..+..+...|.+|.+ ..|+. ..+++. .+.+++.|+++.
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPE-KLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSS-STSHHHHHHHHHHHHTT-EEE
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccc-cCCHHHHHHHHHHHhcCCcEe
Confidence 34567889999988888999999999988877 55544 345544 344667776664
No 199
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=77.93 E-value=9 Score=29.22 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=35.9
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
+|+.+|- ..||.+.+++.+|+++|++++++.|....+.... ..++..|..+.++
T Consensus 72 ~vv~~~~-ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~-~l~~~~Ga~v~~~ 125 (329)
T PRK14045 72 VVITVGA-VHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNY-LLDKIMGIETRVY 125 (329)
T ss_pred EEEEeCc-cHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCH-HHHHHCCCEEEEE
Confidence 4554455 4457999999999999999999999653222121 2245567666544
No 200
>PRK08639 threonine dehydratase; Validated
Probab=77.92 E-value=7 Score=30.93 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=33.0
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
||.+++++..|+.+|++++++-|+.. ++.-++.++..|+++
T Consensus 82 GN~g~alA~~a~~~G~~~~IvmP~~~--~~~k~~~~r~~GA~v 122 (420)
T PRK08639 82 GNHAQGVAYACRHLGIPGVIFMPVTT--PQQKIDQVRFFGGEF 122 (420)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCCC--hHHHHHHHHHcCCCe
Confidence 34999999999999999999999864 344456778888863
No 201
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=77.92 E-value=19 Score=27.79 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=45.5
Q ss_pred HHHhcCCCC-cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 32 KEEMGRVNG-LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 32 ~e~~g~l~g-~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
.|+.|.++. .+|+ +...||+.=+|+..|+.+|.+++++-|+. ++++-.+.++..|+.+...+
T Consensus 53 Ae~~G~l~pG~tIV---E~TSGNTGI~LA~vaa~~Gy~~iivmP~~--~S~er~~~l~a~GAevi~t~ 115 (300)
T COG0031 53 AEKRGLLKPGGTIV---EATSGNTGIALAMVAAAKGYRLIIVMPET--MSQERRKLLRALGAEVILTP 115 (300)
T ss_pred HHHcCCCCCCCEEE---EcCCChHHHHHHHHHHHcCCcEEEEeCCC--CCHHHHHHHHHcCCEEEEcC
Confidence 355566554 3322 33445699999999999999999999985 56777777888888886543
No 202
>PRK07574 formate dehydrogenase; Provisional
Probab=77.75 E-value=5.2 Score=31.70 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=31.6
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+.|+||+++|=++ +.+.++..+..|||++....|.
T Consensus 189 ~L~gktVGIvG~G~---IG~~vA~~l~~fG~~V~~~dr~ 224 (385)
T PRK07574 189 DLEGMTVGIVGAGR---IGLAVLRRLKPFDVKLHYTDRH 224 (385)
T ss_pred ecCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEECCC
Confidence 38999999999864 9999999999999999988874
No 203
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=77.65 E-value=6 Score=28.18 Aligned_cols=35 Identities=23% Similarity=0.128 Sum_probs=30.4
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.+++|++++++|=+ + +...++..+..+|++|++.-
T Consensus 24 ~~l~gk~v~I~G~G-~--vG~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 24 DSLEGKTVAVQGLG-K--VGYKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCCCCCEEEEECCC-H--HHHHHHHHHHHCCCEEEEEc
Confidence 36999999999986 3 99999999999999998654
No 204
>PRK13530 arsenate reductase; Provisional
Probab=77.52 E-value=8.2 Score=25.75 Aligned_cols=56 Identities=7% Similarity=-0.034 Sum_probs=31.8
Q ss_pred CcEEEEECCCC--CchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLK--NGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~--n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~ 95 (99)
.++|.||.-+| .|+++..|+.-...-++++.-++-+...+++..++.+++.|++++
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~~~~~~~~a~~~l~e~Gi~~~ 60 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIEAHGVNPNAIKAMKEVGIDIS 60 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCCCCCCCHHHHHHHHHcCCCcC
Confidence 46889997654 223333333322111244444443334588888899999988753
No 205
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=77.51 E-value=13 Score=28.76 Aligned_cols=55 Identities=15% Similarity=0.081 Sum_probs=38.8
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC----CCHHH----HHHHHhcCCeEEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG----MPESI----QEFVASKGKQQEV 96 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~----~~~~~----~~~a~~~g~~~~~ 96 (99)
.+++++++|.+. +.-.++..++.+|.+|+++.+...- .++.+ .+.+++.|+++..
T Consensus 143 ~~~~vvViGgG~---ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~ 205 (396)
T PRK09754 143 PERSVVIVGAGT---IGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILL 205 (396)
T ss_pred cCCeEEEECCCH---HHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 468999999864 7778888888999999999874432 24433 3445677776643
No 206
>PRK06116 glutathione reductase; Validated
Probab=77.50 E-value=5.8 Score=31.11 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=38.5
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHH----HHHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPES----IQEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~----~~~~a~~~g~~~~ 95 (99)
+++++++|.+. +.-.++..++.+|.+++++.+.... .+++ +.+.+++.|+++.
T Consensus 167 ~~~vvViGgG~---~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~ 226 (450)
T PRK06116 167 PKRVAVVGAGY---IAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLH 226 (450)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEE
Confidence 47899999864 7888899999999999999874432 2344 3445667776654
No 207
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=77.40 E-value=7.2 Score=29.94 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=36.9
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.|+++ +++|++++.||-++- |.+-+..++..-+..|++|.-..
T Consensus 147 l~~~~i~l~Gk~~vVVGrS~i--VGkPla~lL~~~naTVtvcHs~T 190 (283)
T COG0190 147 LEEYGIDLRGKNVVVVGRSNI--VGKPLALLLLNANATVTVCHSRT 190 (283)
T ss_pred HHHhCCCCCCCEEEEECCCCc--CcHHHHHHHHhCCCEEEEEcCCC
Confidence 45554 799999999999887 99999999999999999998754
No 208
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=77.18 E-value=9.7 Score=26.60 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=26.0
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
||+++|-+. +.++++..++..|.+|++..+.
T Consensus 1 ~V~ViGaG~---mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGT---MGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SH---HHHHHHHHHHHTTSEEEEE-SS
T ss_pred CEEEEcCCH---HHHHHHHHHHhCCCcEEEEECC
Confidence 689999865 9999999999999999999883
No 209
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=77.12 E-value=13 Score=29.16 Aligned_cols=54 Identities=7% Similarity=-0.053 Sum_probs=38.7
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHH----HHHHHhcCCeEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESI----QEFVASKGKQQE 95 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~----~~~a~~~g~~~~ 95 (99)
.+.+++++|.+. +.--++..++++|.+|+++.+... .+++++ .+.+++.|+++.
T Consensus 147 ~~~~vvViGgG~---ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 147 QVDKALVVGAGY---ISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR 207 (438)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEE
Confidence 467999999754 788888888999999999987432 124443 344667787664
No 210
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=77.09 E-value=8.9 Score=30.20 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=36.5
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.++++ +++|++++.+|..+- |.+-++.++..-|+.|++|+-..
T Consensus 205 L~~~~i~l~GK~vvVIGRS~i--VGkPla~LL~~~~ATVTicHs~T 248 (345)
T PLN02897 205 LIRSGVEIAGKNAVVIGRSNI--VGLPMSLLLQRHDATVSTVHAFT 248 (345)
T ss_pred HHHhCCCCCCCEEEEECCCcc--ccHHHHHHHHHCCCEEEEEcCCC
Confidence 34455 699999999999887 99999999999999999998644
No 211
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.91 E-value=16 Score=25.58 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=27.6
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYV 72 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~ 72 (99)
+.++++.+.|.... +.+.++..+...|.++++.
T Consensus 2 ~~~~~vlItGa~g~--iG~~~a~~l~~~g~~v~~~ 34 (250)
T PRK08063 2 FSGKVALVTGSSRG--IGKAIALRLAEEGYDIAVN 34 (250)
T ss_pred CCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEE
Confidence 45789999998765 9999999999999998764
No 212
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=76.71 E-value=8.3 Score=30.48 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=32.5
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCe
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~ 93 (99)
||.++|++..|+++|++++++-|+.. ++.-++.++..|++
T Consensus 73 GN~g~a~A~~a~~~G~~~~iv~p~~~--~~~k~~~~~~~GA~ 112 (409)
T TIGR02079 73 GNHAQGFAYACRHLGVHGTVFMPATT--PKQKIDRVKIFGGE 112 (409)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcCCC
Confidence 34899999999999999999999874 44445667788875
No 213
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=76.69 E-value=16 Score=27.64 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=37.6
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCE-EEEECCCCCC---CCHHHHHHHHhcCCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVK-LNYVSPPNLG---MPESIQEFVASKGKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~-v~~~~P~~~~---~~~~~~~~a~~~g~~~~ 95 (99)
..|++++++|.+. +.-.++..+...|.+ ++++.+.... .....++.+++.|+++.
T Consensus 170 ~~g~~vvViG~G~---~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~ 228 (352)
T PRK12770 170 VEGKKVVVVGAGL---TAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFL 228 (352)
T ss_pred cCCCEEEEECCCH---HHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEe
Confidence 3478999999865 666677777788986 9998764321 12345566777777653
No 214
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=76.61 E-value=13 Score=30.39 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=29.3
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHh-hCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLT-LYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~-~~G~~v~~~~P 74 (99)
.+.|++++++||.. .+.++..++. -+||+++.++-
T Consensus 290 ~l~Gkrv~I~gd~~---~a~~l~~~L~~ElGm~vv~~gt 325 (519)
T PRK02910 290 YLTGKRVFVFGDAT---HAVAAARILSDELGFEVVGAGT 325 (519)
T ss_pred hhcCCEEEEEcCcH---HHHHHHHHHHHhcCCeEEEEec
Confidence 47899999999965 6789999999 59999987654
No 215
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=76.37 E-value=16 Score=30.42 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=38.4
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCCC-CC--CHHHHHHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPNL-GM--PESIQEFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~-~~--~~~~~~~a~~~g~~~~~ 96 (99)
..|++++++|.++ ++...+..+.++|. +|+++..... .+ .++.+..+++.|+++..
T Consensus 449 ~~gk~vvViGgG~---~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~~eGv~~~~ 508 (639)
T PRK12809 449 VEGKRVVVLGGGD---TTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQF 508 (639)
T ss_pred CCCCeEEEECCcH---HHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCeEEe
Confidence 3678999999855 66677777778895 8999886432 12 23444567778877654
No 216
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.08 E-value=9.3 Score=29.35 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHhc-CCCCcEEEEECCCCCchhHHHHHHHHhh----CCCEEEEECCCCC
Q psy4411 32 KEEMG-RVNGLTITMVGDLKNGRTVHSLARLLTL----YDVKLNYVSPPNL 77 (99)
Q Consensus 32 ~e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~----~G~~v~~~~P~~~ 77 (99)
.++++ +++|++++.+|..+- |.+-++.++.+ -|.+|+++.....
T Consensus 150 l~~y~i~l~Gk~vvViGrS~i--VG~Pla~lL~~~~~~~~atVt~~hs~t~ 198 (295)
T PRK14174 150 LGRYNIETKGKHCVVVGRSNI--VGKPMANLMLQKLKESNCTVTICHSATK 198 (295)
T ss_pred HHHhCCCCCCCEEEEECCCCc--chHHHHHHHHhccccCCCEEEEEeCCch
Confidence 34455 699999999999887 99988888876 5789999887553
No 217
>PRK08862 short chain dehydrogenase; Provisional
Probab=76.01 E-value=16 Score=26.01 Aligned_cols=36 Identities=6% Similarity=-0.001 Sum_probs=30.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++|+++.+.|-... +.++++..+++.|.+|.++.-
T Consensus 2 ~~~~k~~lVtGas~G--IG~aia~~la~~G~~V~~~~r 37 (227)
T PRK08862 2 DIKSSIILITSAGSV--LGRTISCHFARLGATLILCDQ 37 (227)
T ss_pred CCCCeEEEEECCccH--HHHHHHHHHHHCCCEEEEEcC
Confidence 367889999998765 999999999999999988764
No 218
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=75.87 E-value=15 Score=28.85 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=38.3
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~----~~~a~~~g~~~~ 95 (99)
+++++++|.+. ++-.++..++.+|.+|+++.+..-- +++++ .+.+++.|+++.
T Consensus 175 ~~~v~IiGgG~---~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~ 234 (461)
T PRK05249 175 PRSLIIYGAGV---IGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIR 234 (461)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 57999999865 7888999999999999999864321 34443 344566776653
No 219
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=75.80 E-value=18 Score=28.87 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=39.7
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCCC---CCCHHHHHHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPNL---GMPESIQEFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~---~~~~~~~~~a~~~g~~~~~ 96 (99)
+.|++++++|.++ ++-..+..+..+|. +|+++..... .-.+..++++++.|+++..
T Consensus 280 ~~gk~VvVIGgG~---~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~ 339 (467)
T TIGR01318 280 VEGKRVVVLGGGD---TAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLF 339 (467)
T ss_pred cCCCEEEEECCcH---HHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEe
Confidence 4578999999764 77788888888995 7999976432 2234455677778876543
No 220
>PRK10262 thioredoxin reductase; Provisional
Probab=75.76 E-value=14 Score=27.41 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=37.1
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHH----HHhcCCeE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEF----VASKGKQQ 94 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~----a~~~g~~~ 94 (99)
..+++++++|.+. ++-.++..++.+|.+++++.+.. +..++.+.+. +++.|+.+
T Consensus 144 ~~g~~vvVvGgG~---~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i 202 (321)
T PRK10262 144 YRNQKVAVIGGGN---TAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIIL 202 (321)
T ss_pred cCCCEEEEECCCH---HHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEE
Confidence 4578999999974 77778888889999999998754 3333333333 33455444
No 221
>PRK06370 mercuric reductase; Validated
Probab=75.64 E-value=13 Score=29.31 Aligned_cols=53 Identities=9% Similarity=0.184 Sum_probs=38.3
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCC---CHH----HHHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGM---PES----IQEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~---~~~----~~~~a~~~g~~~~ 95 (99)
+++++++|.+. +.-.++..++.+|.+|+++.+....+ +++ +.+.+++.|+++.
T Consensus 171 ~~~vvVIGgG~---~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~ 230 (463)
T PRK06370 171 PEHLVIIGGGY---IGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVR 230 (463)
T ss_pred CCEEEEECCCH---HHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEE
Confidence 57999999874 77788888999999999998755422 333 3344566776654
No 222
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=75.42 E-value=15 Score=28.78 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=38.2
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHHH----HHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESIQ----EFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~~----~~a~~~g~~~~ 95 (99)
+++++++|.+. +.-.++..++++|.+|+++.+...- .++++. +.+++.|+++.
T Consensus 157 ~~~vvIIGgG~---~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~ 216 (438)
T PRK07251 157 PERLGIIGGGN---IGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFL 216 (438)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 57899999864 8888888999999999999874422 234433 33566777664
No 223
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=75.39 E-value=8.5 Score=26.83 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=41.1
Q ss_pred CCHHHHHHHHhhccCEEEEccCCchhH--------------------------HHHhcCCCCcEEEEECCCCCchhHHHH
Q psy4411 5 SNLIDTVAVLSGYADVIVLRHPEPGAV--------------------------KEEMGRVNGLTITMVGDLKNGRTVHSL 58 (99)
Q Consensus 5 Es~~Dta~vls~y~D~iv~R~~~~~~~--------------------------~e~~g~l~g~~i~~vGd~~n~rv~~Sl 58 (99)
+++..|.+-|-.++|+.++-....+.+ .++++. .+.+++.|||+.| --+
T Consensus 33 ~ev~e~iqeL~d~V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk-~~~k~vmVGnGaN----D~l 107 (152)
T COG4087 33 SEVSETIQELHDMVDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKK-RYEKVVMVGNGAN----DIL 107 (152)
T ss_pred HhhHHHHHHHHHhheEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcC-CCcEEEEecCCcc----hHH
Confidence 467778888888899888876666655 122222 4578999999988 334
Q ss_pred HHHHhhCCCEEEEECCCC
Q psy4411 59 ARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 59 ~~~~~~~G~~v~~~~P~~ 76 (99)
++--+-+| +..+.|++
T Consensus 108 aLr~ADlG--I~tiq~e~ 123 (152)
T COG4087 108 ALREADLG--ICTIQQEG 123 (152)
T ss_pred Hhhhcccc--eEEeccCC
Confidence 44444444 23445543
No 224
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=75.24 E-value=11 Score=24.58 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=25.6
Q ss_pred cEEEEECCCCC-chhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 41 LTITMVGDLKN-GRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 41 ~~i~~vGd~~n-~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
++||.+|...+ ++..+-.+..+...|.++..+.|+.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~ 37 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKG 37 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTC
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCc
Confidence 57999995433 4577777777777999999999965
No 225
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=75.14 E-value=19 Score=25.24 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=35.9
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
++++++.+.|-.. .+..+++..++..|.++++.....-+..+++.+.+++.+.++
T Consensus 4 ~~~~~~lItG~s~--~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~ 58 (247)
T PRK12935 4 LNGKVAIVTGGAK--GIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDV 58 (247)
T ss_pred CCCCEEEEECCCC--HHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeE
Confidence 6788999999755 499999999999999987654322111223334444444444
No 226
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=75.14 E-value=5.2 Score=27.45 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=26.0
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEE
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYV 72 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~ 72 (99)
+.+...+|+++|.++ +...-+.++..+|++++..
T Consensus 16 ~~~~p~~vvv~G~G~---vg~gA~~~~~~lGa~v~~~ 49 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGR---VGQGAAEIAKGLGAEVVVP 49 (168)
T ss_dssp TEE-T-EEEEESTSH---HHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCeEEEEECCCH---HHHHHHHHHhHCCCEEEec
Confidence 346678999999864 9999999999999997664
No 227
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.09 E-value=20 Score=25.20 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=31.7
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
+.++++++.+.|-... +...++..++.-|.++++++..
T Consensus 3 ~~~~~~~vlItGasg~--iG~~la~~l~~~G~~v~~~~r~ 40 (262)
T PRK13394 3 SNLNGKTAVVTGAASG--IGKEIALELARAGAAVAIADLN 40 (262)
T ss_pred ccCCCCEEEEECCCCh--HHHHHHHHHHHCCCeEEEEeCC
Confidence 3467889999998665 9999999999999998887653
No 228
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.95 E-value=18 Score=24.88 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=28.8
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
+..++|.++|.... +..+++..+..-|.++++....
T Consensus 4 ~~~~~vlItGasg~--iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGAARG--LGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCCCch--HHHHHHHHHHHCCCeEEEEeCC
Confidence 45678999998665 9999999999999998775543
No 229
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=74.78 E-value=7.3 Score=31.39 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=34.7
Q ss_pred HHHhcC-CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 32 KEEMGR-VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 32 ~e~~g~-l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+.++. ++|+||++-|=+| |.+-++..+..+|++|+.++-
T Consensus 198 ~~~~g~~l~G~rVaVQG~GN---Vg~~aa~~l~~~GAkvva~sd 238 (411)
T COG0334 198 LKALGDDLEGARVAVQGFGN---VGQYAAEKLHELGAKVVAVSD 238 (411)
T ss_pred HHHcCCCcCCCEEEEECccH---HHHHHHHHHHHcCCEEEEEEc
Confidence 455664 9999999999865 999999999999999999985
No 230
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=74.72 E-value=17 Score=28.27 Aligned_cols=55 Identities=9% Similarity=0.037 Sum_probs=38.6
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC----CCCHHHH----HHHHhcCCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL----GMPESIQ----EFVASKGKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~----~~~~~~~----~~a~~~g~~~~ 95 (99)
..+.+++++|.+. +.-.++..+.++|.+++++.+... .+++++. +.+++.|+++.
T Consensus 147 ~~~~~vvVvGgG~---~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~ 209 (444)
T PRK09564 147 EEIKNIVIIGAGF---IGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELH 209 (444)
T ss_pred cCCCEEEEECCCH---HHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEE
Confidence 4578999999865 777788888899999999876432 1345543 34567777664
No 231
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=74.72 E-value=23 Score=24.45 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=27.9
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
++++++.+.|-... +..+++..+..-|.++++..
T Consensus 3 ~~~~~vlItG~sg~--iG~~l~~~l~~~G~~v~~~~ 36 (248)
T PRK05557 3 LEGKVALVTGASRG--IGRAIAERLAAQGANVVINY 36 (248)
T ss_pred CCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEEe
Confidence 56789999997554 99999999999999986665
No 232
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=74.57 E-value=8.1 Score=29.88 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.1
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
++.|+|++++|-+. +.+..+..+.-|||++....|..
T Consensus 143 ~l~gktvGIiG~Gr---IG~avA~r~~~Fgm~v~y~~~~~ 179 (324)
T COG1052 143 DLRGKTLGIIGLGR---IGQAVARRLKGFGMKVLYYDRSP 179 (324)
T ss_pred CCCCCEEEEECCCH---HHHHHHHHHhcCCCEEEEECCCC
Confidence 58999999999864 99999999999999999999754
No 233
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=74.54 E-value=18 Score=28.23 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=38.1
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCC---CHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGM---PESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~---~~~~----~~~a~~~g~~~~ 95 (99)
+.+++++|.+. +.--++..++.+|.+++++.+....+ ++++ .+.+++.|+++.
T Consensus 158 ~~~v~ViGgG~---~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~ 217 (441)
T PRK08010 158 PGHLGILGGGY---IGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDII 217 (441)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEE
Confidence 46899999864 77888888899999999998754322 3443 344667777664
No 234
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=74.53 E-value=14 Score=30.20 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC-CCCCCHHHHHHHHh-cCCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP-NLGMPESIQEFVAS-KGKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~-~~~~~~~~~~~a~~-~g~~~~ 95 (99)
..+++++++|.+. ++-.++..++++|.+|+++... .+..++...+.+.+ .|+++.
T Consensus 141 ~~g~~VvVIGgG~---~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~ 197 (555)
T TIGR03143 141 FTGMDVFVIGGGF---AAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVK 197 (555)
T ss_pred cCCCEEEEECCCH---HHHHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHhCCCcEEE
Confidence 3578999999875 7777788888999999998763 34445556555554 366553
No 235
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=74.49 E-value=13 Score=28.90 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=38.6
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC----CCCHHH----HHHHHhcCCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL----GMPESI----QEFVASKGKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~----~~~~~~----~~~a~~~g~~~~ 95 (99)
..+++|+++|.+. +.-.++..+++.|.+++++.+... .+++++ .+.+++.|+++.
T Consensus 135 ~~~~~vvViGgG~---~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 197 (427)
T TIGR03385 135 NKVENVVIIGGGY---IGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLR 197 (427)
T ss_pred cCCCeEEEECCCH---HHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEE
Confidence 4568999999864 677788888899999999886442 134443 344566777664
No 236
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=74.40 E-value=9 Score=26.80 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=32.5
Q ss_pred HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
++.+++++|++++++|-+.- +...++..+...|.+++++...
T Consensus 36 ~~~~~~l~gk~vlViG~G~~--~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 36 KRYGIDLAGKKVVVVGRSNI--VGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred HHcCCCCCCCEEEEECCcHH--HHHHHHHHHhhCCCEEEEEECC
Confidence 34457899999999999753 4566888888889888888763
No 237
>PRK12743 oxidoreductase; Provisional
Probab=74.39 E-value=19 Score=25.56 Aligned_cols=32 Identities=9% Similarity=-0.015 Sum_probs=26.3
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
++++.+.|-... +..+++..++..|.+|.++.
T Consensus 2 ~k~vlItGas~g--iG~~~a~~l~~~G~~V~~~~ 33 (256)
T PRK12743 2 AQVAIVTASDSG--IGKACALLLAQQGFDIGITW 33 (256)
T ss_pred CCEEEEECCCch--HHHHHHHHHHHCCCEEEEEe
Confidence 467888887554 99999999999999988774
No 238
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=74.36 E-value=13 Score=30.97 Aligned_cols=59 Identities=25% Similarity=0.465 Sum_probs=41.1
Q ss_pred CCCcEEEEECCCC-CchhHHHH-HHHHhhCCC-EEEEECC----CCCCCCHHHHHHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLK-NGRTVHSL-ARLLTLYDV-KLNYVSP----PNLGMPESIQEFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~-n~rv~~Sl-~~~~~~~G~-~v~~~~P----~~~~~~~~~~~~a~~~g~~~~~ 96 (99)
.++.+|++.||.. .|-++.|+ ...+.++|. ++...-| +||.+.++.++.+.+.|.+.-|
T Consensus 67 ~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~~~LiI 132 (575)
T PRK11070 67 REGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV 132 (575)
T ss_pred HCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcCCCEEE
Confidence 4668999999632 22244443 445677898 6877778 7999999988887776665544
No 239
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=74.26 E-value=17 Score=25.97 Aligned_cols=37 Identities=11% Similarity=0.248 Sum_probs=31.7
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+.++++++.+.|-... +.+.++..++..|.+|.+++.
T Consensus 4 ~~l~~k~vlItGas~g--IG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 4 NEMKGKTLVISGGTRG--IGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred cccCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEEcC
Confidence 4688999999998654 999999999999999988764
No 240
>PRK12829 short chain dehydrogenase; Provisional
Probab=74.21 E-value=11 Score=26.49 Aligned_cols=40 Identities=10% Similarity=0.231 Sum_probs=33.6
Q ss_pred HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
++.++.++++++.+.|-... +.++++..+..-|.+|+++.
T Consensus 3 ~~~~~~~~~~~vlItGa~g~--iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 3 IDLLKPLDGLRVLVTGGASG--IGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred hhHhhccCCCEEEEeCCCCc--HHHHHHHHHHHCCCEEEEEe
Confidence 35567789999999998765 99999999999999987765
No 241
>PRK12828 short chain dehydrogenase; Provisional
Probab=74.08 E-value=26 Score=24.09 Aligned_cols=36 Identities=11% Similarity=0.247 Sum_probs=30.9
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.++++++.+.|-... +..+++..++.-|.++.++..
T Consensus 4 ~~~~k~vlItGatg~--iG~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 4 SLQGKVVAITGGFGG--LGRATAAWLAARGARVALIGR 39 (239)
T ss_pred CCCCCEEEEECCCCc--HhHHHHHHHHHCCCeEEEEeC
Confidence 578899999998665 999999999988999888865
No 242
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.08 E-value=23 Score=24.47 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=27.9
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYV 72 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~ 72 (99)
+.++++.++|-... +...++..++..|.++++.
T Consensus 3 ~~~~~ilI~Gasg~--iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 3 LMGKVAIVTGASGG--IGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCCEEEEeCCCcH--HHHHHHHHHHHCCCEEEEE
Confidence 56789999997554 9999999988889998887
No 243
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=73.61 E-value=18 Score=25.48 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=32.1
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
..++++++.++|-... +...++..++.-|.+|+++...
T Consensus 7 ~~~~~k~ilItGas~~--IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 7 FSLAGQVALVTGSARG--LGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred cCCCCCEEEEECCCch--HHHHHHHHHHHcCCeEEEEeCC
Confidence 3588999999997664 9999999999999999888763
No 244
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=73.59 E-value=16 Score=28.97 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=37.2
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~----~~~a~~~g~~~~ 95 (99)
+.+++++|.+. +.-.++..++.+|.+|+++.+...- .++++ .+.+++.|+++.
T Consensus 180 ~~~vvIIGgG~---~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~ 239 (472)
T PRK05976 180 PKSLVIVGGGV---IGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVV 239 (472)
T ss_pred CCEEEEECCCH---HHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEE
Confidence 47999999754 7778888899999999999754321 23333 344566776654
No 245
>PRK12744 short chain dehydrogenase; Provisional
Probab=73.00 E-value=23 Score=25.09 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=27.8
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
++++++.+.|-... +..+++..+...|.++++++
T Consensus 6 l~~k~vlItGa~~g--IG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 6 LKGKVVLIAGGAKN--LGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred CCCcEEEEECCCch--HHHHHHHHHHHCCCcEEEEe
Confidence 67789999997654 99999999999999965554
No 246
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=72.96 E-value=7.6 Score=24.82 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=28.1
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
||+++|+..+ ....-++..+.+.|.+|.+++|..
T Consensus 1 KIl~i~~~~~-~~~~~~~~~L~~~g~~V~ii~~~~ 34 (139)
T PF13477_consen 1 KILLIGNTPS-TFIYNLAKELKKRGYDVHIITPRN 34 (139)
T ss_pred CEEEEecCcH-HHHHHHHHHHHHCCCEEEEEEcCC
Confidence 6889998665 566788888999999999999944
No 247
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=72.71 E-value=20 Score=29.85 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=39.5
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC------------CCCCCCHHHH----HHHHhcCCeEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP------------PNLGMPESIQ----EFVASKGKQQE 95 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P------------~~~~~~~~~~----~~a~~~g~~~~ 95 (99)
.|++|++||-+. ..-|.+..+++.|.+++++-. +.+.++.+++ +.+++.|+++.
T Consensus 326 ~~~~VaIIGaGp---AGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~ 395 (654)
T PRK12769 326 SDKRVAIIGAGP---AGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFE 395 (654)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEE
Confidence 578999999876 778888999999999998853 2344555554 34566776664
No 248
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=72.69 E-value=21 Score=27.28 Aligned_cols=54 Identities=19% Similarity=0.111 Sum_probs=38.4
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC----CCHH----HHHHHHhcCCeEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG----MPES----IQEFVASKGKQQE 95 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~----~~~~----~~~~a~~~g~~~~ 95 (99)
.+++++++|.+. +.-.++..++..|.+++++.+...- ++++ +.+.+++.|+++.
T Consensus 140 ~~~~vvViGgG~---~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~ 201 (377)
T PRK04965 140 DAQRVLVVGGGL---IGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLL 201 (377)
T ss_pred cCCeEEEECCCH---HHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEE
Confidence 467999999754 6777888888899999999885432 2443 3345667777664
No 249
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=72.59 E-value=9.9 Score=29.48 Aligned_cols=46 Identities=9% Similarity=-0.078 Sum_probs=34.0
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCCCCC--HHHHHHHHhcCCeEEEEe
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNLGMP--ESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~--~~~~~~a~~~g~~~~~~~ 98 (99)
||...|++.+|+.+|++++++-|+.- ++ +.-...++..|+++..+.
T Consensus 92 GN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~~~~GAeV~~~~ 139 (365)
T cd06446 92 GQHGVATATACALFGLECEIYMGAVD-VERQPLNVFRMELLGAEVVPVP 139 (365)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEcCCc-cccccchHHHHHHCCCEEEEeC
Confidence 34899999999999999999999752 22 123345778888886653
No 250
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=72.58 E-value=7.1 Score=26.58 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=28.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.++|++|++||.++ .+-..+..+++.|.+|+++.-..
T Consensus 164 ~~~~k~V~VVG~G~---SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 164 DFKGKRVVVVGGGN---SAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp GCTTSEEEEE--SH---HHHHHHHHHTTTCSEEEEEESS-
T ss_pred hcCCCcEEEEcChH---HHHHHHHHHHhhCCEEEEEecCC
Confidence 47889999999975 78888888899999998887543
No 251
>PRK06128 oxidoreductase; Provisional
Probab=72.39 E-value=25 Score=25.80 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=30.5
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
+.++|+++.+.|-..- +.++++..++..|.+|.+..
T Consensus 51 ~~l~~k~vlITGas~g--IG~~~a~~l~~~G~~V~i~~ 86 (300)
T PRK06128 51 GRLQGRKALITGADSG--IGRATAIAFAREGADIALNY 86 (300)
T ss_pred cccCCCEEEEecCCCc--HHHHHHHHHHHcCCEEEEEe
Confidence 4588899999997554 99999999999999998765
No 252
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=72.23 E-value=13 Score=29.72 Aligned_cols=34 Identities=12% Similarity=0.032 Sum_probs=29.7
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+.|.+++++|-+. +....+..+..+|++++++-+
T Consensus 200 l~GktVvViG~G~---IG~~va~~ak~~Ga~ViV~d~ 233 (413)
T cd00401 200 IAGKVAVVAGYGD---VGKGCAQSLRGQGARVIVTEV 233 (413)
T ss_pred CCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEC
Confidence 6899999999975 999999999999999887643
No 253
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.72 E-value=22 Score=29.62 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=39.6
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC------------CCCCCHHHH----HHHHhcCCeEEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP------------NLGMPESIQ----EFVASKGKQQEV 96 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~------------~~~~~~~~~----~~a~~~g~~~~~ 96 (99)
.+++|+++|-+. ..-+.+..+++.|.+|+++-.. .|.++++++ +.+++.|+++..
T Consensus 309 ~~kkVaIIG~Gp---aGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 379 (639)
T PRK12809 309 RSEKVAVIGAGP---AGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHL 379 (639)
T ss_pred CCCEEEEECcCH---HHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEc
Confidence 589999999975 7778888888999999888532 234555544 345677877654
No 254
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=71.53 E-value=22 Score=29.18 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=40.6
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g 91 (99)
..|+|.+|+.+=...- =.--|+..+...|++|+++++.-+...+++.+.+.+.|
T Consensus 41 ~pl~G~ri~~~lh~~~--~Ta~l~~tL~~~GA~v~~~~~n~~stqD~~aaal~~~g 94 (476)
T PTZ00075 41 KPLKGARITGCLHMTV--QTAVLIETLKALGAEVRWCSCNIFSTQDHAAAAIAKAG 94 (476)
T ss_pred CCCCCCEEEEEEcchH--HHHHHHHHHHHcCCEEEEEcCCCCccccHHHHHHHhcC
Confidence 4699999987755432 22356667788899999999877888888877776665
No 255
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.34 E-value=29 Score=27.56 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=35.4
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
.+.+++|+++|=+. ...+++..+...|.+|+++-...-...+...+++++.|..+
T Consensus 11 ~~~~~~i~v~G~G~---sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~ 65 (458)
T PRK01710 11 FIKNKKVAVVGIGV---SNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKL 65 (458)
T ss_pred hhcCCeEEEEcccH---HHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEE
Confidence 46788999999865 55688888889998877765432212223334455566554
No 256
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=71.13 E-value=34 Score=24.29 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=30.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++|+++.+.|-..- +.++++..++.-|.++++++.
T Consensus 5 ~l~~k~~lItGas~g--IG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 5 DLNGKVAIITGCNTG--LGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred ccCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEecC
Confidence 467889999997654 999999999999999988764
No 257
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=71.03 E-value=12 Score=24.50 Aligned_cols=52 Identities=8% Similarity=0.024 Sum_probs=31.4
Q ss_pred cEEEEECCCCCchhHHHHH-HHHhh-C-C--CEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411 41 LTITMVGDLKNGRTVHSLA-RLLTL-Y-D--VKLNYVSPPNLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~-~~~~~-~-G--~~v~~~~P~~~~~~~~~~~~a~~~g~~~~ 95 (99)
.+|.||..+| .+||-+ ++..+ + + +++.-++-.+-.+++..++.+++.|+.+.
T Consensus 1 ~~vlfvC~~N---~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~~~p~a~~~l~e~Gid~~ 57 (126)
T TIGR02689 1 KKVMFVCKRN---SCRSQMAEGFAKTLGAGNIAVTSAGLEVSRVHPTAIEVMSEIGIDIS 57 (126)
T ss_pred CeEEEEcCCc---HHHHHHHHHHHHHhcCCCEEEEcCcCCCCCCCHHHHHHHHHhCCCcc
Confidence 3688887754 555533 22222 2 2 44455554344688888888998887653
No 258
>PRK14694 putative mercuric reductase; Provisional
Probab=71.01 E-value=24 Score=27.96 Aligned_cols=53 Identities=8% Similarity=0.100 Sum_probs=38.0
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC--CCHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG--MPESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~--~~~~~----~~~a~~~g~~~~ 95 (99)
+.+++++|.+. +.-.++..++.+|.+++++.++... .++++ .+.+++.|+++.
T Consensus 178 ~~~vvViG~G~---~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~ 236 (468)
T PRK14694 178 PERLLVIGASV---VALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVL 236 (468)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 57899999864 7777888889999999999875332 23443 344566777664
No 259
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=70.90 E-value=20 Score=28.12 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=37.0
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~----~~~a~~~g~~~~ 95 (99)
+++++++|.+. +.-.++..++++|.+++++.+...- .++++ .+.+++.|+.+.
T Consensus 172 ~~~vvVvGgG~---~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~ 231 (462)
T PRK06416 172 PKSLVVIGGGY---IGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIK 231 (462)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 47899999865 7777888889999999999874332 23443 334556776654
No 260
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=70.82 E-value=22 Score=31.58 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=39.9
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCCC-CCCCH--HHHHHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPPN-LGMPE--SIQEFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~-~~~~~--~~~~~a~~~g~~~~~ 96 (99)
..|++|++||.++ ++-..+..+.++|. .|+++.+.. .+++. ..++.+++.|+++..
T Consensus 569 ~~Gk~VvVIGgG~---tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~ 628 (1006)
T PRK12775 569 SLGKSVVVIGAGN---TAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFF 628 (1006)
T ss_pred cCCCEEEEECCcH---HHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 3589999999975 88888999999997 477776543 23332 234567778877653
No 261
>PRK08605 D-lactate dehydrogenase; Validated
Probab=70.76 E-value=9.5 Score=29.28 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=29.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHH-hhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLL-TLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~-~~~G~~v~~~~P~ 75 (99)
.+.|++|+++|=++ +.++++..+ ..||+++....|.
T Consensus 143 ~l~g~~VgIIG~G~---IG~~vA~~L~~~~g~~V~~~d~~ 179 (332)
T PRK08605 143 SIKDLKVAVIGTGR---IGLAVAKIFAKGYGSDVVAYDPF 179 (332)
T ss_pred eeCCCEEEEECCCH---HHHHHHHHHHhcCCCEEEEECCC
Confidence 37899999999754 888888887 5689999888763
No 262
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=70.23 E-value=14 Score=29.51 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=36.3
Q ss_pred ECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHH--HHHHHHhcCCeEEEEe
Q psy4411 46 VGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPES--IQEFVASKGKQQEVYE 98 (99)
Q Consensus 46 vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~--~~~~a~~~g~~~~~~~ 98 (99)
.|.+| ...+++.+|+++|++++++-|+. .++.. -+...+..|+++...+
T Consensus 117 tgsGn---hG~A~A~aaa~~Gl~~~I~m~~~-d~~~q~~nv~~mr~~GAeVi~v~ 167 (402)
T PRK13028 117 TGAGQ---HGVATATAAALFGLECEIYMGEV-DIERQHPNVFRMKLLGAEVVPVT 167 (402)
T ss_pred cCcHH---HHHHHHHHHHHcCCCEEEEECCC-cchhhHHHHHHHHHcCCEEEEEc
Confidence 45544 78999999999999999999975 23322 2456778888887654
No 263
>PRK07985 oxidoreductase; Provisional
Probab=70.16 E-value=37 Score=24.98 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=31.9
Q ss_pred hcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 35 ~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+.++++++.+.|-... +..+++..++..|.+|.+.+.
T Consensus 44 ~~~~~~k~vlITGas~g--IG~aia~~L~~~G~~Vi~~~~ 81 (294)
T PRK07985 44 SGRLKDRKALVTGGDSG--IGRAAAIAYAREGADVAISYL 81 (294)
T ss_pred CCccCCCEEEEECCCCc--HHHHHHHHHHHCCCEEEEecC
Confidence 35688899999997654 999999999999999988754
No 264
>PLN02256 arogenate dehydrogenase
Probab=70.16 E-value=11 Score=28.63 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=33.8
Q ss_pred HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
+|+..+-++.+|+++|-+ ++..|++..+...|.++....|.
T Consensus 28 ~~~~~~~~~~kI~IIG~G---~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 28 QEELEKSRKLKIGIVGFG---NFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred hHhhccCCCCEEEEEeeC---HHHHHHHHHHHhCCCEEEEEECc
Confidence 666666678899999953 49999999999999998887775
No 265
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=70.13 E-value=7.3 Score=27.43 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=25.1
Q ss_pred HHHHHhhCCCEEEEECCCCCCCCHHHHHH
Q psy4411 58 LARLLTLYDVKLNYVSPPNLGMPESIQEF 86 (99)
Q Consensus 58 l~~~~~~~G~~v~~~~P~~~~~~~~~~~~ 86 (99)
.+..|+.+|.+++++-|-||.+++..+.+
T Consensus 19 I~R~ca~tga~LhlI~PlGF~l~dk~lkR 47 (155)
T COG0219 19 IIRTCAATGAELHLIEPLGFDLDDKRLKR 47 (155)
T ss_pred HHHHHHhcCCeEEEEccCCCccchhhhhh
Confidence 56689999999999999999999877544
No 266
>PLN02494 adenosylhomocysteinase
Probab=70.01 E-value=24 Score=29.01 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=44.4
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
.+|+|.+|+.+=...- =.--|++.+...|++|.+++..-+.-.+++.+.+.+.|+.+
T Consensus 42 ~pl~G~~i~~~lHl~~--kTa~L~~tL~~~GA~v~~~~~Np~sTqd~vaaal~~~gi~v 98 (477)
T PLN02494 42 QPFKGARITGSLHMTI--QTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAV 98 (477)
T ss_pred CCCCCCEEEEEEechH--HHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhCCceE
Confidence 4699999988755432 23457778888999999999988888888888877777654
No 267
>PRK13748 putative mercuric reductase; Provisional
Probab=69.89 E-value=22 Score=28.65 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=38.2
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC--CCHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG--MPESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~--~~~~~----~~~a~~~g~~~~ 95 (99)
+++++++|.+. +.--++..++.+|.+|+++.+.... .++++ .+.+++.|+++.
T Consensus 270 ~~~vvViGgG~---ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~ 328 (561)
T PRK13748 270 PERLAVIGSSV---VALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVL 328 (561)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE
Confidence 57899999965 7888889999999999999864321 24443 344566776664
No 268
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=69.81 E-value=21 Score=28.19 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=37.5
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCC---CHHH----HHHHHhcCCeEEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGM---PESI----QEFVASKGKQQEV 96 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~---~~~~----~~~a~~~g~~~~~ 96 (99)
..+++++|.+. +.-.++..++++|.+|+++.+....+ ++++ .+.+++.|+++..
T Consensus 170 ~~~vvIIGgG~---iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~ 230 (458)
T PRK06912 170 PSSLLIVGGGV---IGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFT 230 (458)
T ss_pred CCcEEEECCCH---HHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEE
Confidence 36899999864 77788888899999999987643322 3443 3445667776643
No 269
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=69.47 E-value=8.2 Score=30.29 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=30.7
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
..|+|+||++||=++ +.+..+.-+..+|++|.+.-+
T Consensus 12 ~~LkgKtVGIIG~Gs---IG~amA~nL~d~G~~ViV~~r 47 (335)
T PRK13403 12 ELLQGKTVAVIGYGS---QGHAQAQNLRDSGVEVVVGVR 47 (335)
T ss_pred hhhCcCEEEEEeEcH---HHHHHHHHHHHCcCEEEEEEC
Confidence 458999999999865 888899999999999988743
No 270
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=69.43 E-value=28 Score=27.67 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=37.2
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHH----HHHHHhcCCeEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESI----QEFVASKGKQQE 95 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~----~~~a~~~g~~~~ 95 (99)
.+++++++|.+. +.-.++..++.+|.+|+++..... ..++++ .+.+++.|+++.
T Consensus 173 ~~~~vvIIGgG~---ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~ 233 (466)
T PRK06115 173 VPKHLVVIGAGV---IGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFK 233 (466)
T ss_pred CCCeEEEECCCH---HHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Confidence 358999999864 777888899999999999864221 123333 344566776654
No 271
>PRK07035 short chain dehydrogenase; Provisional
Probab=69.36 E-value=27 Score=24.57 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=31.2
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++++++.+.|-... +..+++..++..|.+|.+++.
T Consensus 5 ~l~~k~vlItGas~g--IG~~l~~~l~~~G~~Vi~~~r 40 (252)
T PRK07035 5 DLTGKIALVTGASRG--IGEAIAKLLAQQGAHVIVSSR 40 (252)
T ss_pred ccCCCEEEEECCCcH--HHHHHHHHHHHCCCEEEEEeC
Confidence 477889999998665 999999999999999988875
No 272
>PRK12939 short chain dehydrogenase; Provisional
Probab=69.35 E-value=30 Score=24.03 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=29.5
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.++++++.+.|-... +...++..+.+.|.++.+.+
T Consensus 4 ~~~~~~vlItGa~g~--iG~~la~~l~~~G~~v~~~~ 38 (250)
T PRK12939 4 NLAGKRALVTGAARG--LGAAFAEALAEAGATVAFND 38 (250)
T ss_pred CCCCCEEEEeCCCCh--HHHHHHHHHHHcCCEEEEEe
Confidence 467889999997554 99999999999999988775
No 273
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=69.32 E-value=37 Score=23.94 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=31.1
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++++++++.+.|-... +...++..++.-|.+|+++..
T Consensus 4 ~~~~~k~vlVtGas~g--IG~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 4 QRFAGKVVVVTGAAQG--IGRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred cccCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEEeC
Confidence 3478889999997665 999999999999999988765
No 274
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=69.22 E-value=22 Score=28.03 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=37.6
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHHH----HHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESIQ----EFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~~----~~a~~~g~~~~ 95 (99)
+++++++|.+. +.-.++..++.+|.+++++.+...- +++++. +.+++.|+++.
T Consensus 166 ~~~vvVIGgG~---~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 225 (446)
T TIGR01424 166 PKSILILGGGY---IAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIH 225 (446)
T ss_pred CCeEEEECCcH---HHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEE
Confidence 57899999864 7778888889999999999875432 344443 34556776654
No 275
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=69.21 E-value=20 Score=27.16 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=40.5
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCe
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~ 93 (99)
+.++|+++.+.|=.||.-++.-.+..+..-|+++.+.+-.. .+...+.+.+++.|..
T Consensus 2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s~ 58 (259)
T COG0623 2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGSD 58 (259)
T ss_pred CccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccCC
Confidence 56899999999987774466666777777899988876533 4555566666666543
No 276
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=69.19 E-value=26 Score=28.01 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=38.8
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC------------CCCCCHHH----HHHHHhcCCeEEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP------------NLGMPESI----QEFVASKGKQQEV 96 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~------------~~~~~~~~----~~~a~~~g~~~~~ 96 (99)
.+++|+++|-+. ..-+.+..+++.|.+++++-.. .+.+++++ .+.+++.|+++..
T Consensus 140 ~~~~V~IIG~Gp---aGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 140 TGKRVAVIGAGP---AGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CCCeEEEECCCH---HHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 578999999976 6778888888999999887421 23344444 3456778877643
No 277
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=69.10 E-value=27 Score=24.62 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=30.1
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++|+++.+.|-.. .+...++..++.-|.+|++..-
T Consensus 7 ~~~~k~vlItGa~g--~iG~~ia~~l~~~G~~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQ--GIGYALAEGLAQAGAEVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcc--hHHHHHHHHHHHcCCEEEEEeC
Confidence 57889999999755 4999999999989999887764
No 278
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=69.01 E-value=38 Score=23.98 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=30.3
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++|+++.+.|-... +..+++..+++.|.+|+....
T Consensus 7 ~l~~k~~lItG~~~g--IG~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 7 SLEGKVAVVTGCDTG--LGQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred CCCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEecC
Confidence 377889999997654 999999999999999887654
No 279
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=68.92 E-value=26 Score=28.41 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=40.0
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC------------CCCCCCCHHHH----HHHHhcCCeEEEE
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS------------PPNLGMPESIQ----EFVASKGKQQEVY 97 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~------------P~~~~~~~~~~----~~a~~~g~~~~~~ 97 (99)
+...+++|||+|-+.. .-+...-+++.|.+|++.- =|.|.++.+++ +.++++|.+|..-
T Consensus 119 ~~~tg~~VaviGaGPA---Gl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~ 193 (457)
T COG0493 119 GSRTGKKVAVIGAGPA---GLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLN 193 (457)
T ss_pred CCCCCCEEEEECCCch---HhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEc
Confidence 3567799999998764 3444666788898888764 24566666654 4467888766543
No 280
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=68.70 E-value=26 Score=27.81 Aligned_cols=53 Identities=8% Similarity=0.054 Sum_probs=37.1
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~----~~~a~~~g~~~~ 95 (99)
+++|+++|.+. +.-.++..++++|.+|+++.+...- .++++ .+.+++.|+.+.
T Consensus 183 ~~~vvVvGgG~---~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~ 242 (475)
T PRK06327 183 PKKLAVIGAGV---IGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIH 242 (475)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEE
Confidence 57999999865 7777888889999999999764321 23443 344556676554
No 281
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=68.47 E-value=22 Score=28.61 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=37.6
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC-CCCCHHHHHHHHh-cCCeE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN-LGMPESIQEFVAS-KGKQQ 94 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~-~~~~~~~~~~a~~-~g~~~ 94 (99)
..|++|+++|.++ ++-.++..++.++.+++++.+.. +...+.+.+.+.+ .|+++
T Consensus 349 ~~gk~VvVVGgG~---~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i 404 (517)
T PRK15317 349 FKGKRVAVIGGGN---SGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTI 404 (517)
T ss_pred cCCCEEEEECCCH---HHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEE
Confidence 4678999999865 77778888888999999987743 3334444444544 45554
No 282
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=68.28 E-value=35 Score=26.71 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=30.6
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
..+.|+++++.||+.. +.+++.++.-+||++..++-+
T Consensus 283 ~~l~gkrv~i~~~~~~---~~~la~~l~elGm~v~~~~~~ 319 (410)
T cd01968 283 ARLEGKKAALYTGGVK---SWSLVSALQDLGMEVVATGTQ 319 (410)
T ss_pred HHhCCCEEEEEcCCch---HHHHHHHHHHCCCEEEEEecc
Confidence 3489999999999763 588999999999999888643
No 283
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=68.21 E-value=24 Score=21.30 Aligned_cols=29 Identities=28% Similarity=0.206 Sum_probs=24.9
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCC---CEEEEEC
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYD---VKLNYVS 73 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G---~~v~~~~ 73 (99)
||+++|-++ +...++..+..-| .++.+++
T Consensus 1 kI~iIG~G~---mg~al~~~l~~~g~~~~~v~~~~ 32 (96)
T PF03807_consen 1 KIGIIGAGN---MGSALARGLLASGIKPHEVIIVS 32 (96)
T ss_dssp EEEEESTSH---HHHHHHHHHHHTTS-GGEEEEEE
T ss_pred CEEEECCCH---HHHHHHHHHHHCCCCceeEEeec
Confidence 689998764 9999999999999 8998773
No 284
>PLN02306 hydroxypyruvate reductase
Probab=68.18 E-value=12 Score=29.52 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=29.9
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHh-hCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLT-LYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~-~~G~~v~~~~P 74 (99)
.+.|+|++++|=+. +.+.++..+. -|||+|....|
T Consensus 162 ~L~gktvGIiG~G~---IG~~vA~~l~~~fGm~V~~~d~ 197 (386)
T PLN02306 162 LLKGQTVGVIGAGR---IGSAYARMMVEGFKMNLIYYDL 197 (386)
T ss_pred CCCCCEEEEECCCH---HHHHHHHHHHhcCCCEEEEECC
Confidence 38899999999864 8999998875 89999988876
No 285
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=68.13 E-value=28 Score=27.51 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=37.0
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHH----HHHHHhcCCeEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESI----QEFVASKGKQQE 95 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~----~~~a~~~g~~~~ 95 (99)
.+.+++++|.+. +.-.++..++.+|.+++++.+.... .++++ .+.+++.|+++.
T Consensus 171 ~~~~vvVIGgG~---ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 231 (466)
T PRK07818 171 LPKSIVIAGAGA---IGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKIL 231 (466)
T ss_pred CCCeEEEECCcH---HHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEE
Confidence 357899999764 7888889999999999887643211 23333 344567776654
No 286
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=68.07 E-value=28 Score=28.49 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=27.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHh-hCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLT-LYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~-~~G~~v~~~~ 73 (99)
.+.|++++++||.. -+.++...+. -+||.++.++
T Consensus 302 ~l~Gkrv~I~gd~~---~a~~l~~~L~~ELGm~vv~~g 336 (513)
T CHL00076 302 NLTGKKAVVFGDAT---HAASMTKILAREMGIRVSCAG 336 (513)
T ss_pred ccCCCEEEEEcCch---HHHHHHHHHHHhCCCEEEEec
Confidence 57889999999976 6788887774 7999988664
No 287
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=68.01 E-value=20 Score=28.42 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=28.6
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.++|+++++.||.. .+.++..++.-+||++..+.
T Consensus 300 ~l~gkrv~i~g~~~---~~~~la~~L~elGm~v~~~~ 333 (435)
T cd01974 300 YLHGKKFALYGDPD---FLIGLTSFLLELGMEPVHVL 333 (435)
T ss_pred hcCCCEEEEEcChH---HHHHHHHHHHHCCCEEEEEE
Confidence 58999999999865 68888899999999996644
No 288
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=68.00 E-value=21 Score=23.26 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=34.5
Q ss_pred EEEECC--CCCchhHHHHHHHH----hhCCCEEEEECCC---CCCCCHHHHHHHHhcCCeE
Q psy4411 43 ITMVGD--LKNGRTVHSLARLL----TLYDVKLNYVSPP---NLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 43 i~~vGd--~~n~rv~~Sl~~~~----~~~G~~v~~~~P~---~~~~~~~~~~~a~~~g~~~ 94 (99)
|.||.- .-.|+++..++.-. ..-+..+.-++-. +-.+++..++.+++.|+++
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~ 61 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDI 61 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSC
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeecccccccccchHHHHHHHhCCCc
Confidence 455544 33455666666655 3335777777765 6678888999999988765
No 289
>PF14266 DUF4356: Domain of unknown function (DUF4356)
Probab=67.97 E-value=9.6 Score=31.27 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=30.6
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
...||.|-||.+. .=.-++..++++|+||.+..|
T Consensus 138 ~~PKIlyyG~Ikk--hE~yFL~~Ls~lGcDVLylnP 171 (488)
T PF14266_consen 138 ENPKILYYGDIKK--HELYFLYFLSLLGCDVLYLNP 171 (488)
T ss_pred cCceEEEecCcch--hHHHHHHHHHHcCCcEEEEcc
Confidence 3589999999886 777899999999999999999
No 290
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=67.82 E-value=39 Score=23.58 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=27.5
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
++++++.+.|-... +..+++..++..|.++++..
T Consensus 1 ~~~k~~lVtG~s~g--iG~~~a~~l~~~G~~vv~~~ 34 (246)
T PRK12938 1 MSQRIAYVTGGMGG--IGTSICQRLHKDGFKVVAGC 34 (246)
T ss_pred CCCCEEEEECCCCh--HHHHHHHHHHHcCCEEEEEc
Confidence 35678888888664 99999999999999887743
No 291
>PRK06125 short chain dehydrogenase; Provisional
Probab=67.81 E-value=23 Score=25.10 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++++++.+.|-... +.++++..++..|.+|.+++-
T Consensus 4 ~~~~k~vlItG~~~g--iG~~ia~~l~~~G~~V~~~~r 39 (259)
T PRK06125 4 HLAGKRVLITGASKG--IGAAAAEAFAAEGCHLHLVAR 39 (259)
T ss_pred CCCCCEEEEeCCCch--HHHHHHHHHHHcCCEEEEEeC
Confidence 367889999997654 999999999999999988875
No 292
>PRK12746 short chain dehydrogenase; Provisional
Probab=67.54 E-value=34 Score=23.99 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=28.0
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEE
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYV 72 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~ 72 (99)
+++++++.+.|-..- +...++..+.+-|..+.+.
T Consensus 3 ~~~~~~ilItGasg~--iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 3 NLDGKVALVTGASRG--IGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEE
Confidence 366789999997554 9999999999999988775
No 293
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=67.09 E-value=2.9 Score=27.25 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=29.5
Q ss_pred hHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCe
Q psy4411 54 TVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93 (99)
Q Consensus 54 v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~ 93 (99)
-...++..|...++++++++|+.. +-..+.+.+++.|+.
T Consensus 50 d~~~l~~~a~~~~idlvvvGPE~p-L~~Gl~D~l~~~gi~ 88 (100)
T PF02844_consen 50 DPEELADFAKENKIDLVVVGPEAP-LVAGLADALRAAGIP 88 (100)
T ss_dssp -HHHHHHHHHHTTESEEEESSHHH-HHTTHHHHHHHTT-C
T ss_pred CHHHHHHHHHHcCCCEEEECChHH-HHHHHHHHHHHCCCc
Confidence 356888888999999999999765 445677888888754
No 294
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=66.77 E-value=13 Score=30.51 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=30.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+.|++++++|-+. +.+..+..+..||++|+++.+
T Consensus 251 ~LaGKtVgVIG~G~---IGr~vA~rL~a~Ga~ViV~e~ 285 (476)
T PTZ00075 251 MIAGKTVVVCGYGD---VGKGCAQALRGFGARVVVTEI 285 (476)
T ss_pred CcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 58999999999864 999999999999999888743
No 295
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=66.67 E-value=25 Score=21.25 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.9
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhC-CCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLY-DVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~-G~~v~~~~ 73 (99)
..+++++++++|-+. +++..+..+... +.++.++.
T Consensus 19 ~~~~~~~v~i~G~G~---~g~~~a~~l~~~~~~~v~v~~ 54 (86)
T cd05191 19 KSLKGKTVVVLGAGE---VGKGIAKLLADEGGKKVVLCD 54 (86)
T ss_pred CCCCCCEEEEECCCH---HHHHHHHHHHHcCCCEEEEEc
Confidence 458899999999944 889999998888 56666653
No 296
>PRK12827 short chain dehydrogenase; Provisional
Probab=66.63 E-value=32 Score=23.78 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=29.0
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.++++++.++|-... +..+++..++.-|.+++++.
T Consensus 3 ~~~~~~ilItGasg~--iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 3 SLDSRRVLITGGSGG--LGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CcCCCEEEEECCCCh--HHHHHHHHHHHCCCeEEEEc
Confidence 366788999997655 99999999999999988754
No 297
>PRK07806 short chain dehydrogenase; Provisional
Probab=66.57 E-value=41 Score=23.45 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=28.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
+++++++.+.|-... +...++..+..-|.+|+++.
T Consensus 3 ~~~~k~vlItGasgg--iG~~l~~~l~~~G~~V~~~~ 37 (248)
T PRK07806 3 DLPGKTALVTGSSRG--IGADTAKILAGAGAHVVVNY 37 (248)
T ss_pred CCCCcEEEEECCCCc--HHHHHHHHHHHCCCEEEEEe
Confidence 467889999997554 99999999998999988765
No 298
>PRK07890 short chain dehydrogenase; Provisional
Probab=66.37 E-value=31 Score=24.19 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=30.0
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++++++.+.|-... +.++++..++.-|.+|.+++-
T Consensus 3 l~~k~vlItGa~~~--IG~~la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPG--LGRTLAVRAARAGADVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCCc--HHHHHHHHHHHcCCEEEEEeC
Confidence 56789999998665 999999999999999988863
No 299
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=66.32 E-value=24 Score=25.08 Aligned_cols=49 Identities=20% Similarity=0.086 Sum_probs=33.9
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCe
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~ 93 (99)
|++++|+++|=++ -.|..++-+.--|.+|++.-.++- .-.+.|++.|.+
T Consensus 2 l~~k~IAViGyGs---QG~a~AlNLrDSG~~V~Vglr~~s----~s~~~A~~~Gf~ 50 (165)
T PF07991_consen 2 LKGKTIAVIGYGS---QGHAHALNLRDSGVNVIVGLREGS----ASWEKAKADGFE 50 (165)
T ss_dssp HCTSEEEEES-SH---HHHHHHHHHHHCC-EEEEEE-TTC----HHHHHHHHTT-E
T ss_pred cCCCEEEEECCCh---HHHHHHHHHHhCCCCEEEEecCCC----cCHHHHHHCCCe
Confidence 5789999999875 577888888888999998766442 355667776644
No 300
>PRK08226 short chain dehydrogenase; Provisional
Probab=66.31 E-value=43 Score=23.63 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=31.7
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
+.++++++.+.|-... +...++..+...|.+|++++..
T Consensus 2 ~~~~~~~~lItG~s~g--iG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 2 GKLTGKTALITGALQG--IGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CCCCCCEEEEeCCCCh--HHHHHHHHHHHCCCEEEEecCC
Confidence 3467889999998654 9999999999999999988753
No 301
>PRK14727 putative mercuric reductase; Provisional
Probab=66.07 E-value=29 Score=27.63 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=37.4
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC--CCHHHH----HHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG--MPESIQ----EFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~--~~~~~~----~~a~~~g~~~~ 95 (99)
+++++++|.+. +.--++..++.+|.+|+++.+.... .++++. +.+++.|+++.
T Consensus 188 ~k~vvVIGgG~---iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~ 246 (479)
T PRK14727 188 PASLTVIGSSV---VAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVL 246 (479)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEE
Confidence 47899999864 7777888888999999999875332 244433 34556777653
No 302
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=65.76 E-value=28 Score=31.21 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC------------CCCCCHHHH----HHHHhcCCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP------------NLGMPESIQ----EFVASKGKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~------------~~~~~~~~~----~~a~~~g~~~~ 95 (99)
-.|++|++||-+. ..-|.+..+++.|.+++++-+. +|.++.+++ +.+++.|+++.
T Consensus 537 ~tgKkVaIIGgGP---AGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~ 607 (1019)
T PRK09853 537 GSRKKVAVIGAGP---AGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFE 607 (1019)
T ss_pred CCCCcEEEECCCH---HHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEE
Confidence 4678999999975 6788888899999999988642 344555554 34566777764
No 303
>PRK09242 tropinone reductase; Provisional
Probab=65.75 E-value=33 Score=24.24 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.++++++.++|-... +..+++..++..|.++++++-
T Consensus 6 ~~~~k~~lItGa~~g--IG~~~a~~l~~~G~~v~~~~r 41 (257)
T PRK09242 6 RLDGQTALITGASKG--IGLAIAREFLGLGADVLIVAR 41 (257)
T ss_pred ccCCCEEEEeCCCch--HHHHHHHHHHHcCCEEEEEeC
Confidence 478899999998665 999999999999999988864
No 304
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=65.69 E-value=12 Score=29.97 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=29.1
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhh-CCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTL-YDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~-~G~~v~~~~P 74 (99)
..+.|+++++.+++. -+.++...+.. +||+++.++.
T Consensus 321 ~~L~GkrvaI~~~~~---~~~~l~~~l~~ElGmevv~~~~ 357 (457)
T TIGR01284 321 ERLRGKKVWVWSGGP---KLWHWPRPLEDELGMEVVAVST 357 (457)
T ss_pred HHcCCCEEEEECCCc---HHHHHHHHHHHhCCCEEEEEEE
Confidence 458999999999875 45788888875 9999988754
No 305
>PLN02507 glutathione reductase
Probab=65.42 E-value=30 Score=27.91 Aligned_cols=53 Identities=8% Similarity=0.100 Sum_probs=37.8
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHHH----HHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESIQ----EFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~~----~~a~~~g~~~~ 95 (99)
+++++++|.+. ++-.++..++.+|.+|+++...... +++++. +.+++.|+++.
T Consensus 203 ~k~vvVIGgG~---ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~ 262 (499)
T PLN02507 203 PKRAVVLGGGY---IAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLH 262 (499)
T ss_pred CCeEEEECCcH---HHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEE
Confidence 47899999864 7788888899999999998753321 355544 34566777664
No 306
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=65.18 E-value=31 Score=27.39 Aligned_cols=53 Identities=23% Similarity=0.152 Sum_probs=37.0
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~----~~~a~~~g~~~~ 95 (99)
+.+++++|.+. +.-.++..++++|.+|+++.+...- .+++. .+.+++.|+++.
T Consensus 177 ~~~vvVIGgG~---ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~ 236 (466)
T PRK07845 177 PEHLIVVGSGV---TGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVL 236 (466)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 36899999865 7778888999999999999864321 23333 344566776653
No 307
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=65.04 E-value=18 Score=24.42 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=32.0
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHh
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVAS 89 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~ 89 (99)
||+++|-++ ....++..++.-|.+|++.+++. +.++..++
T Consensus 1 KI~ViGaG~---~G~AlA~~la~~g~~V~l~~~~~-----~~~~~i~~ 40 (157)
T PF01210_consen 1 KIAVIGAGN---WGTALAALLADNGHEVTLWGRDE-----EQIEEINE 40 (157)
T ss_dssp EEEEESSSH---HHHHHHHHHHHCTEEEEEETSCH-----HHHHHHHH
T ss_pred CEEEECcCH---HHHHHHHHHHHcCCEEEEEeccH-----HHHHHHHH
Confidence 689999865 88999999999999999988844 45555443
No 308
>PTZ00058 glutathione reductase; Provisional
Probab=65.02 E-value=30 Score=28.61 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=38.3
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~----~~~a~~~g~~~~ 95 (99)
+++++++|.+. +.-.++..++.+|.+|+++..... .+++++ .+.+++.|+++.
T Consensus 237 pk~VvIIGgG~---iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~ 296 (561)
T PTZ00058 237 AKRIGIAGSGY---IAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINII 296 (561)
T ss_pred CCEEEEECCcH---HHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEE
Confidence 68999999975 788889999999999999875331 134444 344566777654
No 309
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=64.92 E-value=17 Score=29.72 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=46.2
Q ss_pred HHHHHHHHhhc---cCEEEEccCCchhHHHH----------hcCCCCcEEEEECCCCCchhHH----HHHHHHhhCCCEE
Q psy4411 7 LIDTVAVLSGY---ADVIVLRHPEPGAVKEE----------MGRVNGLTITMVGDLKNGRTVH----SLARLLTLYDVKL 69 (99)
Q Consensus 7 ~~Dta~vls~y---~D~iv~R~~~~~~~~e~----------~g~l~g~~i~~vGd~~n~rv~~----Sl~~~~~~~G~~v 69 (99)
..+++.+++|| ...|. =+.++..++++ ...+++.||+.+||.- +.++ -++.+..+||.+|
T Consensus 124 ~~e~~~il~R~gi~~~~v~-G~~~d~~~~~~i~~w~raa~v~~~lr~~rI~~~G~~m--~~v~vtEgd~~~~~~~fG~~V 200 (484)
T cd03557 124 DREFGFIGSRMRIPRKVVV-GHWQDPEVHEKIGDWMRAAAGWADSRHLKVARFGDNM--RNVAVTEGDKVEAQIQFGWSV 200 (484)
T ss_pred cHHHHHHHHHcCCCeeEEE-EeCCCHHHHHHHHHHHHHHHHHHHhhcCeeEEEcCcc--ceeccCcchHHHHHHHhCeEE
Confidence 45667799998 34555 45555555222 2458999999999943 4444 5666889999999
Q ss_pred EEECCCC
Q psy4411 70 NYVSPPN 76 (99)
Q Consensus 70 ~~~~P~~ 76 (99)
....+..
T Consensus 201 ~~~~l~e 207 (484)
T cd03557 201 NGYGVGD 207 (484)
T ss_pred EEEcHHH
Confidence 8887643
No 310
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=64.84 E-value=40 Score=23.83 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=30.4
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++++++.++|-... +..+++..++..|.++++++.
T Consensus 9 l~~k~vlVtG~s~g--IG~~la~~l~~~G~~vv~~~r 43 (255)
T PRK06113 9 LDGKCAIITGAGAG--IGKEIAITFATAGASVVVSDI 43 (255)
T ss_pred cCCCEEEEECCCch--HHHHHHHHHHHCCCeEEEEeC
Confidence 67899999997654 999999999999999988875
No 311
>PRK09134 short chain dehydrogenase; Provisional
Probab=64.62 E-value=43 Score=23.68 Aligned_cols=34 Identities=9% Similarity=-0.003 Sum_probs=28.3
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
..++++.+.|.... +...++..+++.|.+++++.
T Consensus 7 ~~~k~vlItGas~g--iG~~la~~l~~~g~~v~~~~ 40 (258)
T PRK09134 7 AAPRAALVTGAARR--IGRAIALDLAAHGFDVAVHY 40 (258)
T ss_pred CCCCEEEEeCCCcH--HHHHHHHHHHHCCCEEEEEe
Confidence 56788999998665 99999999999999987753
No 312
>PRK04148 hypothetical protein; Provisional
Probab=64.45 E-value=40 Score=22.93 Aligned_cols=54 Identities=15% Similarity=0.050 Sum_probs=36.9
Q ss_pred HHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411 33 EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 33 e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~ 95 (99)
++.+..++++++-||=+.. .+++..++..|.+|+.+ +.+++.++.+++++..+.
T Consensus 10 ~~~~~~~~~kileIG~GfG----~~vA~~L~~~G~~ViaI-----Di~~~aV~~a~~~~~~~v 63 (134)
T PRK04148 10 ENYEKGKNKKIVELGIGFY----FKVAKKLKESGFDVIVI-----DINEKAVEKAKKLGLNAF 63 (134)
T ss_pred HhcccccCCEEEEEEecCC----HHHHHHHHHCCCEEEEE-----ECCHHHHHHHHHhCCeEE
Confidence 4445566789999998854 34555666889887653 456667788887776554
No 313
>PLN02618 tryptophan synthase, beta chain
Probab=64.35 E-value=18 Score=28.97 Aligned_cols=52 Identities=10% Similarity=-0.053 Sum_probs=36.6
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCC--HHHHHHHHhcCCeEEEE
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMP--ESIQEFVASKGKQQEVY 97 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~--~~~~~~a~~~g~~~~~~ 97 (99)
.|+-.|-+| ...+++.+|+++|++++++-|+. .+. +.-+..++..|+++...
T Consensus 122 vIaesgaGN---hG~AlA~aaa~~Gl~~~I~m~~~-~~~~~~~nv~~mr~lGA~Vi~v 175 (410)
T PLN02618 122 IIAETGAGQ---HGVATATVCARFGLECIVYMGAQ-DMERQALNVFRMRLLGAEVRPV 175 (410)
T ss_pred EEEEcCcHH---HHHHHHHHHHHcCCcEEEEEcCC-chhhhhhhHHHHHHCCCEEEEE
Confidence 344445543 88999999999999999999974 222 11234577788888765
No 314
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=64.31 E-value=42 Score=23.89 Aligned_cols=36 Identities=8% Similarity=0.104 Sum_probs=30.2
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++++++.+.|-... +..+++..++..|.++++..-
T Consensus 7 ~~~~k~~lItGa~~~--iG~~ia~~l~~~G~~vv~~~~ 42 (265)
T PRK07097 7 SLKGKIALITGASYG--IGFAIAKAYAKAGATIVFNDI 42 (265)
T ss_pred CCCCCEEEEeCCCch--HHHHHHHHHHHCCCeEEEEeC
Confidence 467889999998765 999999999999999888753
No 315
>PRK07774 short chain dehydrogenase; Provisional
Probab=64.19 E-value=41 Score=23.43 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=30.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.++++++.+.|.... +..+++..++..|.++++..-
T Consensus 3 ~~~~k~vlItGasg~--iG~~la~~l~~~g~~vi~~~r 38 (250)
T PRK07774 3 RFDDKVAIVTGAAGG--IGQAYAEALAREGASVVVADI 38 (250)
T ss_pred ccCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEEeC
Confidence 467889999997665 999999999999999988864
No 316
>PRK07478 short chain dehydrogenase; Provisional
Probab=63.71 E-value=43 Score=23.55 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=30.4
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++++++.+.|-... +...++..+++-|.++.+.+-
T Consensus 3 ~~~~k~~lItGas~g--iG~~ia~~l~~~G~~v~~~~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSG--IGRAAAKLFAREGAKVVVGAR 38 (254)
T ss_pred CCCCCEEEEeCCCCh--HHHHHHHHHHHCCCEEEEEeC
Confidence 367889999998665 999999999999999988874
No 317
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=63.55 E-value=13 Score=30.01 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=29.0
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhh-CCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTL-YDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~-~G~~v~~~~P 74 (99)
..+.|+++++.+++. -+.++...+.. +||+++.++.
T Consensus 323 ~~L~GkrvaI~~~~~---~~~~~~~~l~~ElGmevv~~~~ 359 (461)
T TIGR01860 323 ERLQGKKMCIWTGGP---RLWHWTKALEDDLGMQVVAMSS 359 (461)
T ss_pred HHcCCCEEEEECCCc---hHHHHHHHHHHhCCCEEEEEee
Confidence 458999999998865 45678888885 9999988765
No 318
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=63.42 E-value=41 Score=24.06 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=30.6
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++++++.+.|-... +..+++..++..|.+|+++..
T Consensus 7 ~~~~k~vlVtGas~g--iG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 7 SLKGKVAVITGGGGV--LGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred ccCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEEeC
Confidence 467889999997665 999999999999999988875
No 319
>PRK13984 putative oxidoreductase; Provisional
Probab=63.21 E-value=34 Score=28.10 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=38.6
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC------------CCCCHHHH----HHHHhcCCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN------------LGMPESIQ----EFVASKGKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~------------~~~~~~~~----~~a~~~g~~~~ 95 (99)
-++++|++||-+ ...-+.+..+++.|.+++++-.+. +.++++++ +.+++.|+++.
T Consensus 281 ~~~~~v~IIGaG---~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~ 351 (604)
T PRK13984 281 KKNKKVAIVGSG---PAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIH 351 (604)
T ss_pred cCCCeEEEECCC---HHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEE
Confidence 467899999954 388899999999999999884321 23344443 44667777664
No 320
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=63.08 E-value=49 Score=27.32 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=38.0
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
..+.||+++|-+. +....+.++..+|.+|+.+ +..++-.+++++.|+++
T Consensus 163 ~pg~kVlViGaG~---iGL~Ai~~Ak~lGA~V~a~-----D~~~~rle~aeslGA~~ 211 (509)
T PRK09424 163 VPPAKVLVIGAGV---AGLAAIGAAGSLGAIVRAF-----DTRPEVAEQVESMGAEF 211 (509)
T ss_pred cCCCEEEEECCcH---HHHHHHHHHHHCCCEEEEE-----eCCHHHHHHHHHcCCeE
Confidence 5678999999975 8899999999999975543 45666777777777764
No 321
>PRK07814 short chain dehydrogenase; Provisional
Probab=62.99 E-value=40 Score=24.04 Aligned_cols=36 Identities=8% Similarity=0.069 Sum_probs=30.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.++++++.+.|-... +..+++..+...|.+|++++-
T Consensus 7 ~~~~~~vlItGasgg--IG~~~a~~l~~~G~~Vi~~~r 42 (263)
T PRK07814 7 RLDDQVAVVTGAGRG--LGAAIALAFAEAGADVLIAAR 42 (263)
T ss_pred cCCCCEEEEECCCCh--HHHHHHHHHHHCCCEEEEEeC
Confidence 367899999998654 999999999999999988875
No 322
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.93 E-value=17 Score=25.77 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=23.7
Q ss_pred EECCCCCchhHHHHHHHHhhCCCEEEEECCC-CCCCC
Q psy4411 45 MVGDLKNGRTVHSLARLLTLYDVKLNYVSPP-NLGMP 80 (99)
Q Consensus 45 ~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~-~~~~~ 80 (99)
|+.....|++..+++..+...|.+|++++-+ .+.+|
T Consensus 22 ~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p 58 (185)
T PF04127_consen 22 FITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPP 58 (185)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----
T ss_pred EecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccccc
Confidence 4555677899999999999999999988754 34433
No 323
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=62.91 E-value=19 Score=24.29 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=24.3
Q ss_pred EEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 44 TMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 44 ~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.++|-+. +++.++.++..+|.+++++.|..
T Consensus 2 ~I~GaG~---va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 2 VIFGAGH---VARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEES-ST---CHHHHHHHHHHCTEEEEEEES-C
T ss_pred EEEeCcH---HHHHHHHHHHhCCCEEEEEcCCc
Confidence 4667643 99999999999999999999853
No 324
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=62.59 E-value=38 Score=27.96 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=51.1
Q ss_pred ccCEEEEccCCchhHHH------------------Hhc--CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 17 YADVIVLRHPEPGAVKE------------------EMG--RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 17 y~D~iv~R~~~~~~~~e------------------~~g--~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
=+|+|+.|...-..+++ .+. .-.+.+|++||-.+ +...+-.++..|++++.+.+-..
T Consensus 54 ~~dviIsrG~ta~~i~~~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~---~~~~~~~~~~ll~~~i~~~~~~~ 130 (526)
T TIGR02329 54 RCDVVVAGGSNGAYLKSRLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQD---TPPALRRFQAAFNLDIVQRSYVT 130 (526)
T ss_pred CCcEEEECchHHHHHHHhCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCc---ccHHHHHHHHHhCCceEEEEecC
Confidence 47999999876555411 111 11235899999844 77888889999999888877644
Q ss_pred CCCCHHHHHHHHhcCCeEEE
Q psy4411 77 LGMPESIQEFVASKGKQQEV 96 (99)
Q Consensus 77 ~~~~~~~~~~a~~~g~~~~~ 96 (99)
.+=-+..++++++.|.+.-+
T Consensus 131 ~~e~~~~~~~l~~~G~~~vi 150 (526)
T TIGR02329 131 EEDARSCVNDLRARGIGAVV 150 (526)
T ss_pred HHHHHHHHHHHHHCCCCEEE
Confidence 43223456777788876644
No 325
>PRK12831 putative oxidoreductase; Provisional
Probab=62.49 E-value=38 Score=27.03 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=38.9
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC------------CCCCCCHH-HH----HHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP------------PNLGMPES-IQ----EFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P------------~~~~~~~~-~~----~~a~~~g~~~~~ 96 (99)
-.+++|++||-+. ..-|.+..+++.|.+++++-. +.|.++.+ ++ +++++.|+++..
T Consensus 138 ~~~~~V~IIG~Gp---AGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~ 210 (464)
T PRK12831 138 KKGKKVAVIGSGP---AGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIET 210 (464)
T ss_pred CCCCEEEEECcCH---HHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEc
Confidence 4678999999865 777888889999999988842 13333433 44 345667776643
No 326
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=62.28 E-value=15 Score=25.70 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=30.3
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhh-CCCEEEEECCCCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTL-YDVKLNYVSPPNL 77 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~-~G~~v~~~~P~~~ 77 (99)
.|+|+|+.++||-.- +.---+..|.+ -|.++++.+.+=|
T Consensus 3 ~l~gKkviiiGdRDG--iPgpAie~c~k~~gaevvfs~TECf 42 (154)
T PRK13265 3 LLEGKKVIIIGDRDG--IPGPAIEECVKTTGAEVVFSSTECF 42 (154)
T ss_pred cccCcEEEEEecCCC--CCcHHHHHHHhccCceEEEEeeeEE
Confidence 479999999998554 66667777777 6999998876543
No 327
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=62.20 E-value=39 Score=30.32 Aligned_cols=54 Identities=19% Similarity=0.042 Sum_probs=37.9
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCC--CEEEEECCCCC---CCCHHHHHHHHhcCCeEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYD--VKLNYVSPPNL---GMPESIQEFVASKGKQQE 95 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G--~~v~~~~P~~~---~~~~~~~~~a~~~g~~~~ 95 (99)
.|++|++||.++ ++-..+..+.+++ .+|+++.+... ...++.++.+.+.|+.+.
T Consensus 667 ~GKrVVVIGGGn---VAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~AleeGVe~~ 725 (1019)
T PRK09853 667 LGKHVVVVGGGN---TAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGVEFK 725 (1019)
T ss_pred CCCEEEEECCCh---HHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHHHcCCEEE
Confidence 478999999875 8888888888884 38999987432 222344556666777664
No 328
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=62.15 E-value=16 Score=29.29 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=30.0
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.+.|++++++|-+. +.+..+..+..+|++|+++-
T Consensus 192 ~l~Gk~VvViG~G~---IG~~vA~~ak~~Ga~ViV~d 225 (406)
T TIGR00936 192 LIAGKTVVVAGYGW---CGKGIAMRARGMGARVIVTE 225 (406)
T ss_pred CCCcCEEEEECCCH---HHHHHHHHHhhCcCEEEEEe
Confidence 37899999999865 99999999999999988863
No 329
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=61.92 E-value=12 Score=25.05 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=25.3
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
..++|++||.++ |...|..++..-|.++..+.
T Consensus 9 ~~l~I~iIGaGr---VG~~La~aL~~ag~~v~~v~ 40 (127)
T PF10727_consen 9 ARLKIGIIGAGR---VGTALARALARAGHEVVGVY 40 (127)
T ss_dssp ---EEEEECTSC---CCCHHHHHHHHTTSEEEEES
T ss_pred CccEEEEECCCH---HHHHHHHHHHHCCCeEEEEE
Confidence 358999999965 88999999999998887765
No 330
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=61.85 E-value=23 Score=29.30 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=51.7
Q ss_pred ccCEEEEccCCchhHH------------------HHhc--CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 17 YADVIVLRHPEPGAVK------------------EEMG--RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 17 y~D~iv~R~~~~~~~~------------------e~~g--~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
=+|+|+.|...-..++ +.+. .--+.+|++||-.+ +...+-.++..|+.++...+-..
T Consensus 64 ~~dviIsrG~ta~~i~~~~~iPVv~i~~s~~Dil~al~~a~~~~~~iavv~~~~---~~~~~~~~~~~l~~~i~~~~~~~ 140 (538)
T PRK15424 64 RCDAIIAAGSNGAYLKSRLSVPVILIKPSGFDVMQALARARKLTSSIGVVTYQE---TIPALVAFQKTFNLRIEQRSYVT 140 (538)
T ss_pred CCcEEEECchHHHHHHhhCCCCEEEecCCHhHHHHHHHHHHhcCCcEEEEecCc---ccHHHHHHHHHhCCceEEEEecC
Confidence 4699999988655551 1111 11235899999844 78888899999999888877644
Q ss_pred CCCCHHHHHHHHhcCCeEEE
Q psy4411 77 LGMPESIQEFVASKGKQQEV 96 (99)
Q Consensus 77 ~~~~~~~~~~a~~~g~~~~~ 96 (99)
.+=-+..++++++.|.+.-+
T Consensus 141 ~~e~~~~v~~lk~~G~~~vv 160 (538)
T PRK15424 141 EEDARGQINELKANGIEAVV 160 (538)
T ss_pred HHHHHHHHHHHHHCCCCEEE
Confidence 32223456778888877654
No 331
>PLN02546 glutathione reductase
Probab=61.82 E-value=37 Score=28.05 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=38.9
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHH----HHHHHhcCCeEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESI----QEFVASKGKQQE 95 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~----~~~a~~~g~~~~ 95 (99)
.+++++++|.+. +.--++..++.+|.+|+++.+..- .+++++ .+.+++.|+++.
T Consensus 251 ~~k~V~VIGgG~---iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~ 311 (558)
T PLN02546 251 KPEKIAIVGGGY---IALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFH 311 (558)
T ss_pred cCCeEEEECCCH---HHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEE
Confidence 467999999875 777888888899999999876432 245554 345667787764
No 332
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=61.82 E-value=26 Score=27.70 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=34.0
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC---CCCHHHHHH
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL---GMPESIQEF 86 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~---~~~~~~~~~ 86 (99)
+++++++|.+. +.-.++..++.+|.+|+++.+... .+++++.+.
T Consensus 169 ~k~vvVIGgG~---ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGY---IAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDR 215 (452)
T ss_pred CCcEEEECCCH---HHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHH
Confidence 57899999864 788888899999999999998543 245665443
No 333
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=61.81 E-value=45 Score=27.96 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=39.5
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC------------CCCCCHHH----HHHHHhcCCeEEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP------------NLGMPESI----QEFVASKGKQQEV 96 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~------------~~~~~~~~----~~~a~~~g~~~~~ 96 (99)
.+++|++||-+. ..-+.+..+++.|.+++++-+. .|.+++++ ++.+++.|+++..
T Consensus 192 ~~k~VaIIGaGp---AGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~ 262 (652)
T PRK12814 192 SGKKVAIIGAGP---AGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRF 262 (652)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 568999999865 6778888889999999988653 23345554 3445677877643
No 334
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=61.80 E-value=21 Score=23.32 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=34.6
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECCC-CCCCCHHHHHHHHhcCCeEEEE
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSPP-NLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P~-~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
+++.++|... .+.++++..+..-|. .+.+++.. ..+-.+++.+.++..+.++...
T Consensus 1 k~~lItGa~~--giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~ 57 (167)
T PF00106_consen 1 KTVLITGASS--GIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFI 57 (167)
T ss_dssp EEEEEETTTS--HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEECCCC--HHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccc
Confidence 4678888865 599999999999965 66666664 0111122334455566666544
No 335
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=61.78 E-value=38 Score=28.32 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=37.1
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHH--HHHHHHhcCCeE
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPES--IQEFVASKGKQQ 94 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~--~~~~a~~~g~~~ 94 (99)
+-++++|-+|||-=.--.+..+..+|.+|.++.|+....+.. ..++++..|+.+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 345778999998777777788888999999998875432111 234566666543
No 336
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=61.56 E-value=36 Score=24.73 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHhhccC----EEEE--ccCCchhH----HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEE
Q psy4411 3 MYSNLIDTVAVLSGYAD----VIVL--RHPEPGAV----KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYV 72 (99)
Q Consensus 3 ~~Es~~Dta~vls~y~D----~iv~--R~~~~~~~----~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~ 72 (99)
++++.+|...+.....+ ++-+ |++.-... +++++ + +++|-++= .-..-+..+...|.+|. +
T Consensus 15 r~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~---~---~~vGAGTV--l~~~~a~~a~~aGA~Fi-v 85 (204)
T TIGR01182 15 RIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP---D---ALIGAGTV--LNPEQLRQAVDAGAQFI-V 85 (204)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC---C---CEEEEEeC--CCHHHHHHHHHcCCCEE-E
Confidence 45666666666666544 4444 44332222 33333 2 45665542 22455677777899886 6
Q ss_pred CCCCCCCCHHHHHHHHhcCCeE
Q psy4411 73 SPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 73 ~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
+| + +++++++.+++.|..+
T Consensus 86 sP-~--~~~~v~~~~~~~~i~~ 104 (204)
T TIGR01182 86 SP-G--LTPELAKHAQDHGIPI 104 (204)
T ss_pred CC-C--CCHHHHHHHHHcCCcE
Confidence 77 4 4788988888877543
No 337
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=61.53 E-value=37 Score=26.89 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=37.4
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC--C-CCCHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN--L-GMPESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~--~-~~~~~~----~~~a~~~g~~~~ 95 (99)
+++++++|.+. +.--++..++.+|.+|+++.... + .+++++ .+.+++.|+++.
T Consensus 166 ~~~vvIIGgG~---iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 166 PKRVVIVGAGY---IAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVH 225 (450)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEE
Confidence 47899999875 78888889999999999987532 1 234443 344566776654
No 338
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=61.37 E-value=34 Score=26.93 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=37.0
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~----~~~a~~~g~~~~ 95 (99)
..+++++|.+. +.-.++..++.+|.+|+++.+...- .++++ .+.+++.|+++.
T Consensus 166 ~~~vvIIGgG~---~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 225 (463)
T TIGR02053 166 PESLAVIGGGA---IGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVV 225 (463)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEE
Confidence 47899999865 7778888889999999999875322 23433 334556676553
No 339
>PRK06139 short chain dehydrogenase; Provisional
Probab=61.18 E-value=33 Score=26.05 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=37.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
.++++++.+.|-..- +.+.++..++..|.+|++++-.. +-.+++.+++++.|.++
T Consensus 4 ~l~~k~vlITGAs~G--IG~aia~~la~~G~~Vvl~~R~~-~~l~~~~~~~~~~g~~~ 58 (330)
T PRK06139 4 PLHGAVVVITGASSG--IGQATAEAFARRGARLVLAARDE-EALQAVAEECRALGAEV 58 (330)
T ss_pred CCCCCEEEEcCCCCH--HHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHhcCCcE
Confidence 477889999998654 99999999999999998886421 11123334444445443
No 340
>PRK06198 short chain dehydrogenase; Provisional
Probab=61.03 E-value=45 Score=23.47 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=29.9
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCE-EEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVK-LNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~-v~~~~P 74 (99)
.++++++.++|-... +...++..++..|.+ |.+++-
T Consensus 3 ~~~~k~vlItGa~g~--iG~~la~~l~~~G~~~V~~~~r 39 (260)
T PRK06198 3 RLDGKVALVTGGTQG--LGAAIARAFAERGAAGLVICGR 39 (260)
T ss_pred CCCCcEEEEeCCCch--HHHHHHHHHHHCCCCeEEEEcC
Confidence 467889999998665 999999999999998 777654
No 341
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=61.03 E-value=18 Score=25.52 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=25.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.+.|++++.+|-+. +.++.+..+..+|++|++.-
T Consensus 20 ~l~Gk~vvV~GYG~---vG~g~A~~lr~~Ga~V~V~e 53 (162)
T PF00670_consen 20 MLAGKRVVVIGYGK---VGKGIARALRGLGARVTVTE 53 (162)
T ss_dssp --TTSEEEEE--SH---HHHHHHHHHHHTT-EEEEE-
T ss_pred eeCCCEEEEeCCCc---ccHHHHHHHhhCCCEEEEEE
Confidence 48899999999865 99999999999999998864
No 342
>PRK07846 mycothione reductase; Reviewed
Probab=61.03 E-value=41 Score=26.63 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=32.9
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHHHH
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESIQE 85 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~~~ 85 (99)
.++++++|.+. +.-.++..++.+|.+|+++.+.... +++++.+
T Consensus 166 ~~~vvIIGgG~---iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~ 211 (451)
T PRK07846 166 PESLVIVGGGF---IAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISE 211 (451)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHH
Confidence 47899999864 8888999999999999999875432 3555543
No 343
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=61.02 E-value=24 Score=27.20 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=28.6
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.+|+++|.+- ..+-++..+.++|.++.++.|..
T Consensus 3 ~~igilG~Gq---l~~ml~~aa~~lG~~v~~~d~~~ 35 (372)
T PRK06019 3 KTIGIIGGGQ---LGRMLALAAAPLGYKVIVLDPDP 35 (372)
T ss_pred CEEEEECCCH---HHHHHHHHHHHcCCEEEEEeCCC
Confidence 6899999953 88899999999999999999853
No 344
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.90 E-value=45 Score=23.10 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=29.4
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++++++.++|-... +..+++..+...|.+++++..
T Consensus 3 ~~~~~~lItG~~g~--iG~~~a~~l~~~G~~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQG--LGRAMAEYLAQKGAKLALIDL 37 (253)
T ss_pred CCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEEeC
Confidence 67889999997554 999999999999999888765
No 345
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=60.84 E-value=42 Score=26.24 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=36.8
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHH----HHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESI----QEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~----~~~a~~~g~~~~ 95 (99)
+++++++|.+. +.-.++..++++|.+|+++.+...- +++++ .+.+++.|+++.
T Consensus 170 ~~~vvViGgG~---~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~ 229 (461)
T TIGR01350 170 PESLVIIGGGV---IGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKIL 229 (461)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 47899999764 7778888889999999999764322 23333 344566776654
No 346
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=60.81 E-value=8.9 Score=27.22 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=18.0
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHh
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLT 63 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~ 63 (99)
.+.|++|+++||...-....||+..+.
T Consensus 12 ~lr~k~i~fiGDS~~Rq~~~~l~~~l~ 38 (263)
T PF13839_consen 12 RLRNKRIVFIGDSTTRQQYESLVCLLG 38 (263)
T ss_pred HccCCEEEEEechhhHHHHHHHHHHHh
Confidence 355999999999654234556655543
No 347
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=60.78 E-value=18 Score=29.20 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=30.4
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+.|++++++|-+. +.+..+..+..+|++|+++-.
T Consensus 209 ~l~Gk~VlViG~G~---IG~~vA~~lr~~Ga~ViV~d~ 243 (425)
T PRK05476 209 LIAGKVVVVAGYGD---VGKGCAQRLRGLGARVIVTEV 243 (425)
T ss_pred CCCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEEcC
Confidence 36899999999864 999999999999999888754
No 348
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=60.73 E-value=57 Score=26.24 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=38.2
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC------------CCCCCHHHH----HHHHhcCCeEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP------------NLGMPESIQ----EFVASKGKQQE 95 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~------------~~~~~~~~~----~~a~~~g~~~~ 95 (99)
.+.+|++||.+. ..-+.+..+++.|.+++++... .+.++++++ +.+++.|+++.
T Consensus 142 ~~~~V~IIGaG~---aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~ 211 (485)
T TIGR01317 142 TGKKVAVVGSGP---AGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFV 211 (485)
T ss_pred CCCEEEEECCcH---HHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEE
Confidence 458999999975 6778888888999999998532 233455543 44567787664
No 349
>PTZ00052 thioredoxin reductase; Provisional
Probab=60.72 E-value=34 Score=27.54 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=37.4
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC--CCCHH----HHHHHHhcCCeEE
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL--GMPES----IQEFVASKGKQQE 95 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~--~~~~~----~~~~a~~~g~~~~ 95 (99)
..+++++|.+. +.-.++..++.+|.+|+++..... .++++ +.+.+++.|+.+.
T Consensus 182 ~~~vvIIGgG~---iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~ 240 (499)
T PTZ00052 182 PGKTLIVGASY---IGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFL 240 (499)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEE
Confidence 35899999875 788899999999999999976322 12333 3445667776653
No 350
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=60.44 E-value=24 Score=29.60 Aligned_cols=53 Identities=13% Similarity=-0.071 Sum_probs=37.8
Q ss_pred EEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCC-CHHHHHHHHhcCCeEEEEe
Q psy4411 43 ITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGM-PESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 43 i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~-~~~~~~~a~~~g~~~~~~~ 98 (99)
|+-.|.+| ...+++.+|+++|++++++-|+.-.. .+.-+...+..|+++...+
T Consensus 322 i~e~gsGn---hG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~ 375 (610)
T PRK13803 322 IAETGAGQ---HGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVL 375 (610)
T ss_pred EEecChHH---HHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEEC
Confidence 33356644 78999999999999999999976321 1223456788888887654
No 351
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=60.44 E-value=19 Score=28.78 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=30.0
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
..+.|++|+.||-++ .+..++.-++..|.+|++..
T Consensus 171 ~~~~GKrV~VIG~Ga---SA~di~~~l~~~ga~vt~~q 205 (443)
T COG2072 171 EDLRGKRVLVIGAGA---SAVDIAPELAEVGASVTLSQ 205 (443)
T ss_pred cccCCCeEEEECCCc---cHHHHHHHHHhcCCeeEEEe
Confidence 469999999999976 78888888999998887775
No 352
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=60.43 E-value=56 Score=25.88 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=38.4
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC------------CCCCCHHHHH----HHHhcCCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP------------NLGMPESIQE----FVASKGKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~------------~~~~~~~~~~----~a~~~g~~~~ 95 (99)
-.+++|++||-+. ..-+.+..+++.|.+++++-.. .+.+++++++ .+++.|+++.
T Consensus 131 ~~~~~V~IIG~G~---aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~ 201 (449)
T TIGR01316 131 STHKKVAVIGAGP---AGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFR 201 (449)
T ss_pred CCCCEEEEECcCH---HHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEE
Confidence 4578999999865 6678888888999999998642 2234555543 4566777664
No 353
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=60.38 E-value=34 Score=30.17 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=37.9
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCE-EEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVK-LNYVSPPNLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~a~~~g~~~~ 95 (99)
..|++++++|.+. .+-.++..++..|.+ ++++.. .-.+.+.+.+.+++.|+++.
T Consensus 315 ~~gk~VvViG~G~---~g~e~A~~L~~~G~~vV~vv~~-~~~~~~~l~~~L~~~GV~i~ 369 (985)
T TIGR01372 315 APGKRIVVATNND---SAYRAAADLLAAGIAVVAIIDA-RADVSPEARAEARELGIEVL 369 (985)
T ss_pred CCCCeEEEECCCH---HHHHHHHHHHHcCCceEEEEcc-CcchhHHHHHHHHHcCCEEE
Confidence 4688999999865 777788888899965 444433 22345667777888876653
No 354
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=60.29 E-value=43 Score=26.39 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=28.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHh-hCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLT-LYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~-~~G~~v~~~~P 74 (99)
.+.|++++++||.. -+.++...+. -+||+++.++-
T Consensus 298 ~l~gkrv~i~g~~~---~~~~l~~~L~~elG~~vv~~~~ 333 (430)
T cd01981 298 NLTGKRAFVFGDAT---HVAAATRILAREMGFRVVGAGT 333 (430)
T ss_pred cccCCeEEEEcChH---HHHHHHHHHHHHcCCEEEeccC
Confidence 47899999999955 6788888877 69999888664
No 355
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=60.20 E-value=27 Score=27.84 Aligned_cols=52 Identities=10% Similarity=-0.081 Sum_probs=36.7
Q ss_pred EEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCH--HHHHHHHhcCCeEEEEe
Q psy4411 43 ITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPE--SIQEFVASKGKQQEVYE 98 (99)
Q Consensus 43 i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~--~~~~~a~~~g~~~~~~~ 98 (99)
|+-.|.++ ...+++..|+++|++.+++-|+. ..+. .-+...+..|+++...+
T Consensus 110 IaetgaGn---hG~A~A~~aa~~Gl~c~I~mp~~-d~~rq~~nv~~m~~lGA~Vv~v~ 163 (397)
T PRK04346 110 IAETGAGQ---HGVATATAAALLGLECVIYMGAE-DVERQALNVFRMKLLGAEVVPVT 163 (397)
T ss_pred EEecCcHH---HHHHHHHHHHHcCCcEEEEecCC-chhhhhhHHHHHHHCCCEEEEEC
Confidence 33345544 78899999999999999999975 2222 12355677888887654
No 356
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.12 E-value=58 Score=22.97 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=30.9
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
+++++++.+.|-...+.+...++..++..|.++.+.+..
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 467888999997532349999999999999999988743
No 357
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=60.03 E-value=50 Score=26.68 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=44.4
Q ss_pred HHHhc---CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhc-CCeE
Q psy4411 32 KEEMG---RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK-GKQQ 94 (99)
Q Consensus 32 ~e~~g---~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~-g~~~ 94 (99)
+++|+ +|+|.+|+.+=...- =.--|++.+...|++|..++-.-|.-.+++.+.+.+. |+.+
T Consensus 34 R~~f~~~kPlkG~~i~~~lH~t~--kTAvLietL~a~GAeV~~a~cNplSTqD~vaaAl~~~~GipV 98 (420)
T COG0499 34 REEFAEEKPLKGARIAGCLHMTA--KTAVLIETLKAGGAEVRWASCNPLSTQDDVAAALAAKEGIPV 98 (420)
T ss_pred HHHHhhcCCCCccEEEEEEeehH--HHHHHHHHHHhcCceEEEecCCCCcccHHHHHHHhhccCceE
Confidence 56664 599999887755432 2235777888899999999998898888887776544 6543
No 358
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=60.02 E-value=35 Score=26.96 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEEE
Q psy4411 53 RTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 53 rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~ 97 (99)
|-++..+.+|.+||++-+++-|+.- | ..=++..+..|+.+.++
T Consensus 84 NHaQGvA~aa~~lGi~a~IvMP~~t-p-~~Kv~a~r~~GaeVil~ 126 (347)
T COG1171 84 NHAQGVAYAAKRLGIKATIVMPETT-P-KIKVDATRGYGAEVILH 126 (347)
T ss_pred cHHHHHHHHHHHhCCCEEEEecCCC-c-HHHHHHHHhcCCEEEEE
Confidence 3799999999999999999999775 3 33335566677766554
No 359
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=59.71 E-value=39 Score=26.46 Aligned_cols=33 Identities=12% Similarity=0.021 Sum_probs=24.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHh-hCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLT-LYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~-~~G~~v~~~~P 74 (99)
.+++..++||||.. .+=+..+. ..|+.-..+.|
T Consensus 291 ~~~~~~vlYvGD~i-----~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 291 KWRGKEVLYFGDHI-----YGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CCCCCcEEEECCcc-----hHHHHhhHHhcCcEEEEEch
Confidence 46788999999954 33444444 78999999999
No 360
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=59.65 E-value=45 Score=29.47 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=40.0
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC------------CCCCCCHHHHH----HHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP------------PNLGMPESIQE----FVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P------------~~~~~~~~~~~----~a~~~g~~~~~ 96 (99)
-.|++|++||-+. ..=|.+.-+++.|.+|+++-. |.|.++.++++ .+++.|++|..
T Consensus 304 ~~gkkVaVIGsGP---AGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~ 375 (944)
T PRK12779 304 AVKPPIAVVGSGP---SGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVK 375 (944)
T ss_pred CCCCeEEEECCCH---HHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEE
Confidence 4589999999876 566778888889999987742 34555666553 46677877653
No 361
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=59.59 E-value=36 Score=25.13 Aligned_cols=30 Identities=27% Similarity=0.016 Sum_probs=25.1
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+|+++|-+. +..|++..+...|.+|....+
T Consensus 2 ~I~IIG~G~---mG~sla~~L~~~g~~V~~~d~ 31 (279)
T PRK07417 2 KIGIVGLGL---IGGSLGLDLRSLGHTVYGVSR 31 (279)
T ss_pred eEEEEeecH---HHHHHHHHHHHCCCEEEEEEC
Confidence 689999654 999999999999988877765
No 362
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=59.55 E-value=10 Score=23.76 Aligned_cols=41 Identities=10% Similarity=-0.061 Sum_probs=31.3
Q ss_pred hHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 54 TVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 54 v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
+.++--.+-..+|..+...+||....++..++.+++.|.+|
T Consensus 82 i~~~~~~l~~~~g~~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 82 IERSREILEEITGRPPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHHHHHHHHSSEESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHhCCCCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 44566666677888888888888888999999999999776
No 363
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=59.54 E-value=21 Score=29.38 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=29.7
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhh-CCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTL-YDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~-~G~~v~~~~P 74 (99)
..|.|+|+++.|++. -+.|++..+.. +||+++.++-
T Consensus 324 ~~L~GKrvai~~gg~---~~~~~~~~l~~ElGmevv~~~t 360 (513)
T TIGR01861 324 ERLKGKKVCLWPGGS---KLWHWAHVIEEEMGLKVVSVYS 360 (513)
T ss_pred HhcCCCEEEEECCch---HHHHHHHHHHHhCCCEEEEEec
Confidence 568999999999865 67788888885 9999988754
No 364
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=59.52 E-value=40 Score=22.15 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=32.2
Q ss_pred EEEEECCCC--CchhHHHHHHHHhh-CCCEEEEECC--C--CCCCCHHHHHHHHhcCCeEE
Q psy4411 42 TITMVGDLK--NGRTVHSLARLLTL-YDVKLNYVSP--P--NLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 42 ~i~~vGd~~--n~rv~~Sl~~~~~~-~G~~v~~~~P--~--~~~~~~~~~~~a~~~g~~~~ 95 (99)
+|.||..+| .|+++..++.-.+. .++.+.-++- . |-.+++..++.+++.|++++
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~~~g~~~~~~a~~~l~~~Gid~s 62 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGWHVGGRPDPRAIAVLAEHGIDIS 62 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCccCCCCCCHHHHHHHHHcCCCcc
Confidence 677886544 33444444443322 1455555553 2 34688888888998887763
No 365
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=59.47 E-value=20 Score=28.44 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=23.4
Q ss_pred chhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411 52 GRTVHSLARLLTLYDVKLNYVSPPNL 77 (99)
Q Consensus 52 ~rv~~Sl~~~~~~~G~~v~~~~P~~~ 77 (99)
||.+.|++..++++|++.+++-|++.
T Consensus 126 GN~g~alA~~aa~~Gi~~~I~vP~~~ 151 (398)
T TIGR03844 126 GNTGRAFAEVSAITGQPVILVVPKSS 151 (398)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECCCh
Confidence 34999999999999999999999874
No 366
>PRK05867 short chain dehydrogenase; Provisional
Probab=59.27 E-value=58 Score=22.91 Aligned_cols=36 Identities=8% Similarity=0.069 Sum_probs=30.3
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.++|+++.+.|-... +...++..++..|.+|.+++-
T Consensus 6 ~~~~k~vlVtGas~g--IG~~ia~~l~~~G~~V~~~~r 41 (253)
T PRK05867 6 DLHGKRALITGASTG--IGKRVALAYVEAGAQVAIAAR 41 (253)
T ss_pred cCCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEEcC
Confidence 467889999997654 999999999999999888764
No 367
>PRK05876 short chain dehydrogenase; Provisional
Probab=58.75 E-value=50 Score=23.99 Aligned_cols=35 Identities=6% Similarity=-0.007 Sum_probs=29.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.++|+++.+.|-... +...++..++..|.+|+++.
T Consensus 3 ~~~~k~vlVTGas~g--IG~ala~~La~~G~~Vv~~~ 37 (275)
T PRK05876 3 GFPGRGAVITGGASG--IGLATGTEFARRGARVVLGD 37 (275)
T ss_pred CcCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEEe
Confidence 477889999998665 99999999999999988765
No 368
>PRK10358 putative rRNA methylase; Provisional
Probab=58.69 E-value=49 Score=22.75 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=29.1
Q ss_pred cEEEEEC--CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHH
Q psy4411 41 LTITMVG--DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQE 85 (99)
Q Consensus 41 ~~i~~vG--d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~ 85 (99)
++|+..+ |+.| .=+++..|.-+|.+.+++.|.....+++.+.
T Consensus 2 ~~ivL~~~~dPgN---lGti~Rta~a~G~~~viv~~~~d~~~~k~~r 45 (157)
T PRK10358 2 LNIVLFEPEIPPN---TGNIIRLCANTGFRLHIIEPMGFAWDDKRLR 45 (157)
T ss_pred eEEEEeCCCCcCh---HHHHHHHHHHhCCEEEEECCCCCCCChHHHH
Confidence 3566665 4443 3477888899999999999976545565543
No 369
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=58.60 E-value=21 Score=26.53 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=34.0
Q ss_pred CCCCCchhHHHHHHHHhhCCCEEEEECC-CCCCCCHHHHHHHHhcC
Q psy4411 47 GDLKNGRTVHSLARLLTLYDVKLNYVSP-PNLGMPESIQEFVASKG 91 (99)
Q Consensus 47 Gd~~n~rv~~Sl~~~~~~~G~~v~~~~P-~~~~~~~~~~~~a~~~g 91 (99)
+|..| ++...+..++.+|++.+.++| .|++.-+.+.+.+.+.|
T Consensus 72 ~DIpn--T~~~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~ 115 (240)
T COG0284 72 ADIPN--TVALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGG 115 (240)
T ss_pred ccchH--HHHHHHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcC
Confidence 79888 999999999999999999999 45655555556566555
No 370
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=58.55 E-value=58 Score=22.63 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=28.7
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++++++.+.|-... +...++..+..-|.++.+..-
T Consensus 1 ~~~~~ilItGas~~--iG~~la~~l~~~g~~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGG--IGGATCRRFAEEGAKVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCCh--HHHHHHHHHHHCCCEEEEecC
Confidence 46788999997654 999999999999999887753
No 371
>PLN02494 adenosylhomocysteinase
Probab=58.53 E-value=24 Score=29.03 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=30.4
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+.|++++++|-+. +.+..+..+..||++|+++.+
T Consensus 252 LaGKtVvViGyG~---IGr~vA~~aka~Ga~VIV~e~ 285 (477)
T PLN02494 252 IAGKVAVICGYGD---VGKGCAAAMKAAGARVIVTEI 285 (477)
T ss_pred cCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 7899999999874 999999999999999888754
No 372
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=58.31 E-value=61 Score=24.04 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=36.2
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCH--HHHHHHHhcCCeE
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPE--SIQEFVASKGKQQ 94 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~--~~~~~a~~~g~~~ 94 (99)
+-++++|.+|||-=.-..+..+...|.+|.++.|+....+. ...+.+++.|..+
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQSSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCCCChHHHHHHHHHHHHcCCCE
Confidence 34577899999887778888888889999888875442111 1234455666553
No 373
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=58.06 E-value=26 Score=27.73 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=32.7
Q ss_pred HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCC-CEEEEECC
Q psy4411 32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSP 74 (99)
Q Consensus 32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G-~~v~~~~P 74 (99)
.+.++.+.+.+++++|-+. ++...+..+...| .+++++..
T Consensus 172 ~~~~~~l~~~~VlViGaG~---iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 172 ERIFGSLKGKKALLIGAGE---MGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred HHHhCCccCCEEEEECChH---HHHHHHHHHHHCCCCEEEEEeC
Confidence 3456789999999999854 8888888888899 67888766
No 374
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=57.90 E-value=26 Score=26.84 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=28.4
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
..+.|+++++.||.. .+.+++.++..+|+++..+.
T Consensus 275 ~~l~g~~~~i~~~~~---~~~~~~~~l~e~G~~v~~~~ 309 (399)
T cd00316 275 EYLGGKKVAIFGDGD---LLLALARFLLELGMEVVAAG 309 (399)
T ss_pred HHhcCCEEEEECCCc---HHHHHHHHHHHCCCEEEEEE
Confidence 458899999999975 67778888889999876655
No 375
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=57.78 E-value=50 Score=29.66 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=38.9
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC------------CCCCCHHHH----HHHHhcCCeEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP------------NLGMPESIQ----EFVASKGKQQE 95 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~------------~~~~~~~~~----~~a~~~g~~~~ 95 (99)
.+++|++||-+. ..-|.+..+++.|.+|+++-+. .|.++.+.+ +.+++.|+++.
T Consensus 536 ~~kkVaIIGGGP---AGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~ 605 (1012)
T TIGR03315 536 SAHKVAVIGAGP---AGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFK 605 (1012)
T ss_pred CCCcEEEECCCH---HHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEE
Confidence 468999999976 6778888889999999988642 344555554 34556777664
No 376
>PRK07791 short chain dehydrogenase; Provisional
Probab=57.77 E-value=71 Score=23.32 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=29.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.++++++.+.|-..- +..+++..++..|.++.++.
T Consensus 3 ~l~~k~~lITGas~G--IG~aia~~la~~G~~vii~~ 37 (286)
T PRK07791 3 LLDGRVVIVTGAGGG--IGRAHALAFAAEGARVVVND 37 (286)
T ss_pred ccCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEee
Confidence 467889999998664 99999999999999988875
No 377
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=57.59 E-value=31 Score=29.63 Aligned_cols=53 Identities=9% Similarity=-0.094 Sum_probs=37.1
Q ss_pred EEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC-CCCHHHHHHHHhcCCeEEEEe
Q psy4411 43 ITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL-GMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 43 i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~-~~~~~~~~~a~~~g~~~~~~~ 98 (99)
|+=.|.+| ...|++..|+++|++++++-|+.- ..++.-+...+..|+++...+
T Consensus 383 IvetssGN---hG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~ 436 (695)
T PRK13802 383 IAETGAGQ---HGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVT 436 (695)
T ss_pred EEEECcHH---HHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEEC
Confidence 33345544 889999999999999999999741 223333456777788876543
No 378
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=57.44 E-value=60 Score=22.26 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=28.8
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+.++++.+.|.... +...++..+...|.++.++.-
T Consensus 3 ~~~~~ilItGasg~--iG~~l~~~l~~~g~~v~~~~r 37 (246)
T PRK05653 3 LQGKTALVTGASRG--IGRAIALRLAADGAKVVIYDS 37 (246)
T ss_pred CCCCEEEEECCCcH--HHHHHHHHHHHCCCEEEEEeC
Confidence 45678999998654 999999999889999887775
No 379
>PRK06172 short chain dehydrogenase; Provisional
Probab=57.26 E-value=61 Score=22.69 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=29.6
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.++++++.+.|-... +..+++..++.-|.+|.+++
T Consensus 4 ~l~~k~ilItGas~~--iG~~ia~~l~~~G~~v~~~~ 38 (253)
T PRK06172 4 TFSGKVALVTGGAAG--IGRATALAFAREGAKVVVAD 38 (253)
T ss_pred CCCCCEEEEeCCCch--HHHHHHHHHHHcCCEEEEEe
Confidence 467899999997554 99999999999999988876
No 380
>PRK05717 oxidoreductase; Validated
Probab=57.20 E-value=28 Score=24.58 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=31.6
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.+++|+++.+.|-... +...++..+..-|.++.++.
T Consensus 6 ~~~~~k~vlItG~sg~--IG~~~a~~l~~~g~~v~~~~ 41 (255)
T PRK05717 6 PGHNGRVALVTGAARG--IGLGIAAWLIAEGWQVVLAD 41 (255)
T ss_pred cccCCCEEEEeCCcch--HHHHHHHHHHHcCCEEEEEc
Confidence 4688999999998665 99999999999999998875
No 381
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=57.04 E-value=32 Score=28.59 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=31.9
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
+...+||+++|.+- ..+-++..+.++|.++.+..|..
T Consensus 19 ~~~~k~IgIIGgGq---lg~mla~aA~~lG~~Vi~ld~~~ 55 (577)
T PLN02948 19 GVSETVVGVLGGGQ---LGRMLCQAASQMGIKVKVLDPLE 55 (577)
T ss_pred CCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEeCCC
Confidence 47789999999963 88999999999999999998743
No 382
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2. this is part of the trmH (spoU) family of rRNA methylases
Probab=57.04 E-value=52 Score=22.34 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=26.4
Q ss_pred EEEEEC--CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHH
Q psy4411 42 TITMVG--DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPES 82 (99)
Q Consensus 42 ~i~~vG--d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~ 82 (99)
+|+..+ |+.| .=+.+..|.-||.+.+++.|.++.+.+.
T Consensus 3 ~vvL~~v~dP~N---lG~iiRta~afGv~~vi~~~~~~~~~~~ 42 (153)
T TIGR00185 3 NIVLYEPEIPPN---TGNIARTCAATGTRLHLIEPLGFFLDDK 42 (153)
T ss_pred EEEEcCCCCCCh---HHHHHHHHHHhCCEEEEECCCCCCCccH
Confidence 455555 4443 4578888999999988988876655433
No 383
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=57.02 E-value=65 Score=23.55 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=30.7
Q ss_pred CCcEEEEEC--CCCCchhHHHHHHHHhhCCC-EEEEECCCCCCCCHHHH
Q psy4411 39 NGLTITMVG--DLKNGRTVHSLARLLTLYDV-KLNYVSPPNLGMPESIQ 84 (99)
Q Consensus 39 ~g~~i~~vG--d~~n~rv~~Sl~~~~~~~G~-~v~~~~P~~~~~~~~~~ 84 (99)
..++|+.++ |+.| .=+.+..+..||. +++++.|..+ +.++..
T Consensus 2 ~~i~vvL~~~~~p~N---iGaiaR~~~~fG~~~l~lv~p~~~-~~~~a~ 46 (233)
T TIGR00050 2 ENIRIVLVEPSHSGN---IGSIARAMKNMGLTELCLVNPKSH-LEEEAY 46 (233)
T ss_pred CCeEEEEECCCCCCC---HHHHHHHHHhCCCCEEEEeCCCcC-CCHHHH
Confidence 457788887 4333 4578888999996 9999999776 565554
No 384
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=56.86 E-value=24 Score=24.85 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=32.6
Q ss_pred CCcEEEEECC-CCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 39 NGLTITMVGD-LKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 39 ~g~~i~~vGd-~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.|.+|.+|=| ..+|.+++++..++.++|.+++-+++
T Consensus 115 ~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~ 151 (179)
T COG0503 115 PGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAF 151 (179)
T ss_pred CCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEE
Confidence 6899999999 56678999999999999999998887
No 385
>PRK09449 dUMP phosphatase; Provisional
Probab=56.81 E-value=57 Score=22.66 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=35.5
Q ss_pred HhhccCEEEEccC----C-chhH----HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 14 LSGYADVIVLRHP----E-PGAV----KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 14 ls~y~D~iv~R~~----~-~~~~----~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
|..|+|.++.... + +..+ .+++|-...-.+.+|||.. .+-+.++...|+....+.+.+
T Consensus 133 l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~vgD~~-----~~Di~~A~~aG~~~i~~~~~~ 199 (224)
T PRK09449 133 LRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLMVGDNL-----HSDILGGINAGIDTCWLNAHG 199 (224)
T ss_pred hHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEEEcCCc-----HHHHHHHHHCCCcEEEECCCC
Confidence 4557888876532 1 1112 3444432335799999954 344778889999888776543
No 386
>PRK06138 short chain dehydrogenase; Provisional
Probab=56.81 E-value=34 Score=23.84 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=29.1
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
++++++.+.|-... +...++..++.-|.++.+.+
T Consensus 3 ~~~k~~lItG~sg~--iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 3 LAGRVAIVTGAGSG--IGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCcEEEEeCCCch--HHHHHHHHHHHCCCeEEEec
Confidence 67889999998654 99999999999999988775
No 387
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=56.64 E-value=51 Score=26.58 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=36.7
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC-CCCHHHHHHHHh-cCCeEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL-GMPESIQEFVAS-KGKQQE 95 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~-~~~~~~~~~a~~-~g~~~~ 95 (99)
.+++++++|.++ +.-.++..++.+|.+++++..... ..+..+.+.+++ .|+.+.
T Consensus 351 ~~k~VvViGgG~---~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~l~~~~gV~i~ 406 (515)
T TIGR03140 351 KGKDVAVIGGGN---SGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPNVDIL 406 (515)
T ss_pred CCCEEEEECCcH---HHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHHHhcCCCCEEE
Confidence 578999999875 677788888888999998875332 222334455554 466653
No 388
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=56.51 E-value=29 Score=22.15 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=18.3
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
||+.+|| +..+.++...|++....++
T Consensus 2 kIaVIGD-------~dtv~GFrLaGi~~~~~~~ 27 (100)
T PRK02228 2 EIAVIGS-------PEFTTGFRLAGIRKVYEVP 27 (100)
T ss_pred EEEEEeC-------HHHHHHHHHcCCceEEeeC
Confidence 7899999 2456677788987555444
No 389
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.38 E-value=34 Score=23.76 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=29.7
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++++++.++|-... +...++..+...|.+|++.+-
T Consensus 3 ~~~~~vlItGasg~--iG~~l~~~l~~~G~~V~~~~r 37 (251)
T PRK07231 3 LEGKVAIVTGASSG--IGEGIARRFAAEGARVVVTDR 37 (251)
T ss_pred cCCcEEEEECCCCh--HHHHHHHHHHHCCCEEEEEeC
Confidence 67889999998665 999999999999999887764
No 390
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.21 E-value=36 Score=24.24 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=31.8
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
|.++|+++.+.|-.+.+.+.+.++..+++-|.+|.+++-
T Consensus 3 ~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred cccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 457889999999863124999999999999999988764
No 391
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=56.04 E-value=25 Score=28.68 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=32.0
Q ss_pred HHhc-CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 33 EEMG-RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 33 e~~g-~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
++.+ +++|+|+++-|=+| |....+..+..+|++++-++
T Consensus 229 ~~~~~~l~Gk~VaVqG~Gn---Vg~~aa~~L~e~GakVVavS 267 (454)
T PTZ00079 229 KKLNDSLEGKTVVVSGSGN---VAQYAVEKLLQLGAKVLTMS 267 (454)
T ss_pred HHcCCCcCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEE
Confidence 3344 69999999999865 99999999999999999555
No 392
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.87 E-value=71 Score=22.66 Aligned_cols=38 Identities=5% Similarity=0.062 Sum_probs=30.6
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
+.++|+++.+.|-..-+.+...++..++..|.++++++
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~ 39 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTY 39 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEe
Confidence 35889999999975312499999999999999998874
No 393
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=55.83 E-value=21 Score=27.11 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=26.9
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
+|+++|.+ ...+-++..+.++|.++.++.|..
T Consensus 1 ~igiiG~g---ql~~~l~~aa~~lG~~v~~~d~~~ 32 (352)
T TIGR01161 1 TVGILGGG---QLGRMLALAARPLGIKVHVLDPDA 32 (352)
T ss_pred CEEEECCC---HHHHHHHHHHHHcCCEEEEECCCC
Confidence 57899985 388899999999999999998743
No 394
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=55.82 E-value=55 Score=28.13 Aligned_cols=55 Identities=11% Similarity=-0.016 Sum_probs=38.6
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC----CCHH----HHHHHHhcCCeEEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG----MPES----IQEFVASKGKQQEV 96 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~----~~~~----~~~~a~~~g~~~~~ 96 (99)
.+++++.||.+. +.--++..++.+|.+++++.+.... ++++ +.+.+++.|+++..
T Consensus 139 ~~k~vvVVGgG~---~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~ 201 (785)
T TIGR02374 139 RFKKAAVIGGGL---LGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLL 201 (785)
T ss_pred cCCeEEEECCCH---HHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEe
Confidence 467899999864 7778888889999999988754332 3343 33446677876643
No 395
>PRK10126 tyrosine phosphatase; Provisional
Probab=55.64 E-value=60 Score=21.74 Aligned_cols=52 Identities=17% Similarity=0.075 Sum_probs=33.4
Q ss_pred cEEEEECCCCCchhHHHHH-HHHhh-CC--CEEEEECC---CCCCCCHHHHHHHHhcCCeEE
Q psy4411 41 LTITMVGDLKNGRTVHSLA-RLLTL-YD--VKLNYVSP---PNLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~-~~~~~-~G--~~v~~~~P---~~~~~~~~~~~~a~~~g~~~~ 95 (99)
.+|.||.-+| ++||-+ ++..+ +. .++.-++- +|-.+++..++.+++.|+.++
T Consensus 3 ~~iLFVC~gN---~cRSpmAEa~~~~~~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~ 61 (147)
T PRK10126 3 NNILVVCVGN---ICRSPTAERLLQRYHPELKVESAGLGALVGKGADPTAISVAAEHQLSLE 61 (147)
T ss_pred CeEEEEcCCc---HhHHHHHHHHHHHhcCCeEEEeeeccCCCCCCCCHHHHHHHHHcCCCcC
Confidence 5889998755 777754 32332 33 44555553 344678888888998887653
No 396
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.63 E-value=68 Score=22.38 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=25.4
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
+++.+.|.... +..+++..++..|.+++++.
T Consensus 3 k~vlItG~sg~--iG~~la~~L~~~g~~vi~~~ 33 (256)
T PRK12745 3 PVALVTGGRRG--IGLGIARALAAAGFDLAIND 33 (256)
T ss_pred cEEEEeCCCch--HHHHHHHHHHHCCCEEEEEe
Confidence 46777787554 99999999999999988876
No 397
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=55.44 E-value=1e+02 Score=24.25 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=34.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV 87 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a 87 (99)
.++..+..||||. .+=+.++...|++...+.|..+.++ ++.+.+
T Consensus 118 ~v~~~~svmIGDs------~sDi~aAk~aGi~~I~v~~~~~~~~-~i~~~l 161 (354)
T PRK05446 118 AIDLANSYVIGDR------ETDVQLAENMGIKGIRYARETLNWD-AIAEQL 161 (354)
T ss_pred CCCcccEEEEcCC------HHHHHHHHHCCCeEEEEECCCCCHH-HHHHHH
Confidence 4566789999994 3788899999999999999888766 444443
No 398
>PLN02852 ferredoxin-NADP+ reductase
Probab=55.41 E-value=49 Score=27.08 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=29.8
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCC
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGK 92 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~ 92 (99)
.|+++++||.++ ++-..+..+.+.+.++ ...++++..++.++.+|+
T Consensus 165 ~gk~VvVIGgGn---vAlD~Ar~L~~~~~~l-----~~tdi~~~~l~~l~~~~~ 210 (491)
T PLN02852 165 SSDTAVVLGQGN---VALDCARILLRPTDEL-----ASTDIAEHALEALRGSSV 210 (491)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHhCcccc-----ccccccHHHHHHHhhCCC
Confidence 578999999864 8888888888775443 123444555555554443
No 399
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=55.37 E-value=60 Score=21.67 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=54.5
Q ss_pred CHHHHHHHHhhc--cCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHH
Q psy4411 6 NLIDTVAVLSGY--ADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESI 83 (99)
Q Consensus 6 s~~Dta~vls~y--~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~ 83 (99)
.+..+...+..| .+-+++-.+.+..+.+-.....+.+++++-+... ..... ...+...+++ .+.|+-..+.+..
T Consensus 77 ~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~-~~~~~-~~~~~~~~~~--~v~~~~~~~~~~~ 152 (189)
T cd08556 77 LEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPP-LDPLL-AELARALGAD--AVNPHYKLLTPEL 152 (189)
T ss_pred HHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCc-ccchh-hhHHHhcCCe--EEccChhhCCHHH
Confidence 356677777787 5888888888776644333344566777665332 11111 1345556665 4455434467888
Q ss_pred HHHHHhcCCeEEEEe
Q psy4411 84 QEFVASKGKQQEVYE 98 (99)
Q Consensus 84 ~~~a~~~g~~~~~~~ 98 (99)
++.++++|..+-..|
T Consensus 153 i~~~~~~g~~v~~wt 167 (189)
T cd08556 153 VRAAHAAGLKVYVWT 167 (189)
T ss_pred HHHHHHcCCEEEEEc
Confidence 999999988775543
No 400
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.30 E-value=78 Score=24.68 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=36.2
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
++|+++.++|-+. +..|.+..+...|.+|.+.-.... ......+.+++.|+.+
T Consensus 3 ~~~k~v~v~G~g~---~G~s~a~~l~~~G~~V~~~d~~~~-~~~~~~~~l~~~g~~~ 55 (447)
T PRK02472 3 YQNKKVLVLGLAK---SGYAAAKLLHKLGANVTVNDGKPF-SENPEAQELLEEGIKV 55 (447)
T ss_pred cCCCEEEEEeeCH---HHHHHHHHHHHCCCEEEEEcCCCc-cchhHHHHHHhcCCEE
Confidence 5788999999753 888889999999999888753322 2223334455556554
No 401
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=55.24 E-value=63 Score=22.17 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=37.2
Q ss_pred HhhccCEEEEccC----Cch-hH----HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 14 LSGYADVIVLRHP----EPG-AV----KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 14 ls~y~D~iv~R~~----~~~-~~----~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
|..|+|.++.-.. +.. .+ .++++.++...+++|||.. .+-+.++...|++...+.+.
T Consensus 135 l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~igD~~-----~~di~~A~~~G~~~i~~~~~ 200 (224)
T TIGR02254 135 LFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMIGDSL-----TADIKGGQNAGLDTCWMNPD 200 (224)
T ss_pred cHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEEECCCc-----HHHHHHHHHCCCcEEEECCC
Confidence 4557787776432 111 11 4555346667899999953 34577888999998888763
No 402
>PRK12747 short chain dehydrogenase; Provisional
Probab=55.09 E-value=71 Score=22.40 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=28.0
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
++++++.+.|-..- +...++..++..|.++.+..
T Consensus 2 ~~~k~~lItGas~g--IG~~ia~~l~~~G~~v~~~~ 35 (252)
T PRK12747 2 LKGKVALVTGASRG--IGRAIAKRLANDGALVAIHY 35 (252)
T ss_pred CCCCEEEEeCCCCh--HHHHHHHHHHHCCCeEEEEc
Confidence 45788889997654 99999999999999988763
No 403
>PRK05866 short chain dehydrogenase; Provisional
Probab=54.79 E-value=55 Score=24.10 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=31.3
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
..++++++.+.|-... +...++..+++-|.+|.+++-
T Consensus 36 ~~~~~k~vlItGasgg--IG~~la~~La~~G~~Vi~~~R 72 (293)
T PRK05866 36 VDLTGKRILLTGASSG--IGEAAAEQFARRGATVVAVAR 72 (293)
T ss_pred cCCCCCEEEEeCCCcH--HHHHHHHHHHHCCCEEEEEEC
Confidence 3578889999997654 999999999999999988875
No 404
>PRK06500 short chain dehydrogenase; Provisional
Probab=54.76 E-value=69 Score=22.19 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=30.4
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.++++++.+.|-... +..+++..++..|.++.+.+.
T Consensus 3 ~~~~k~vlItGasg~--iG~~la~~l~~~g~~v~~~~r 38 (249)
T PRK06500 3 RLQGKTALITGGTSG--IGLETARQFLAEGARVAITGR 38 (249)
T ss_pred CCCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEecC
Confidence 367889999998665 999999999999999888764
No 405
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=54.70 E-value=26 Score=28.32 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=29.9
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
..+.|+++++.+|+. ...+++.++.-+||++..+.-
T Consensus 320 ~~l~Gk~vaI~~~~~---~~~~la~~l~ElGm~v~~~~~ 355 (475)
T PRK14478 320 PRLEGKRVLLYTGGV---KSWSVVKALQELGMEVVGTSV 355 (475)
T ss_pred HHhCCCEEEEEcCCc---hHHHHHHHHHHCCCEEEEEEE
Confidence 348999999999874 677999999999999987764
No 406
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=54.66 E-value=37 Score=25.06 Aligned_cols=30 Identities=10% Similarity=0.019 Sum_probs=24.6
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+|+++|-++ +..+++..++..|.+|++..+
T Consensus 1 ~IgvIG~G~---mG~~iA~~l~~~G~~V~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGI---MGSPMSINLAKAGYQLHVTTI 30 (291)
T ss_pred CEEEEEecH---HHHHHHHHHHHCCCeEEEEcC
Confidence 488999754 899999999999999887654
No 407
>PRK08278 short chain dehydrogenase; Provisional
Probab=54.54 E-value=79 Score=22.76 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=30.6
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
++++++.+.|-... +..+++..++..|.++.+++..
T Consensus 4 ~~~k~vlItGas~g--IG~~ia~~l~~~G~~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRG--IGLAIALRAARDGANIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEEecc
Confidence 67789999998654 9999999999999999988753
No 408
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=54.35 E-value=65 Score=26.43 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=35.6
Q ss_pred CCcEEEEECC--CCCchhHHHHHHHHhhCCCEEEEECC----CCCCCCHHHHHHHHhcCCeE
Q psy4411 39 NGLTITMVGD--LKNGRTVHSLARLLTLYDVKLNYVSP----PNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 39 ~g~~i~~vGd--~~n~rv~~Sl~~~~~~~G~~v~~~~P----~~~~~~~~~~~~a~~~g~~~ 94 (99)
++.+|+++|| ..---.+-.+..++.++|.++.+..| ++|.+.++.++...+.+.+.
T Consensus 53 ~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~~~~~~~~~L 114 (539)
T TIGR00644 53 NNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALREAIENGVSL 114 (539)
T ss_pred cCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHHHHHhcCCCE
Confidence 4578999984 22101233555667778998888877 78888887666544334333
No 409
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=54.32 E-value=25 Score=28.92 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=33.4
Q ss_pred CCCCcEEEEECCC-CCchhHHHHHHHHhhCC---CEEEEECCCC
Q psy4411 37 RVNGLTITMVGDL-KNGRTVHSLARLLTLYD---VKLNYVSPPN 76 (99)
Q Consensus 37 ~l~g~~i~~vGd~-~n~rv~~Sl~~~~~~~G---~~v~~~~P~~ 76 (99)
.++|++|++|=|. ..|.+.+..+.++.+.| +++.++|||-
T Consensus 374 ~~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~sPp~ 417 (500)
T PRK07349 374 VLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSPPV 417 (500)
T ss_pred ccCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCCCcc
Confidence 4689999999994 66778899999999998 5888889974
No 410
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=54.26 E-value=36 Score=25.52 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=31.0
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P 74 (99)
..+++++++++|-+. ++++.+..+...|. +++++..
T Consensus 123 ~~~~~k~vlIlGaGG---aaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 123 PDASLERVVQLGAGG---AGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred cCccCCEEEEECCcH---HHHHHHHHHHHcCCCEEEEECC
Confidence 368889999999876 89999999999997 7888765
No 411
>PRK08703 short chain dehydrogenase; Provisional
Probab=54.17 E-value=42 Score=23.37 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=30.9
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.++++++.+.|-... +.++++..++..|.+|++.+..
T Consensus 3 ~l~~k~vlItG~sgg--iG~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 3 TLSDKTILVTGASQG--LGEQVAKAYAAAGATVILVARH 39 (239)
T ss_pred CCCCCEEEEECCCCc--HHHHHHHHHHHcCCEEEEEeCC
Confidence 467889999997554 9999999999999999888753
No 412
>PRK06841 short chain dehydrogenase; Provisional
Probab=54.06 E-value=41 Score=23.59 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=30.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++++++.+.|-... +...++..++..|.+|.+++.
T Consensus 12 ~~~~k~vlItGas~~--IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 12 DLSGKVAVVTGGASG--IGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred CCCCCEEEEECCCCh--HHHHHHHHHHHCCCEEEEEeC
Confidence 477899999998665 999999999999999988775
No 413
>PRK06057 short chain dehydrogenase; Provisional
Probab=53.98 E-value=39 Score=23.84 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=30.4
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.++|+++.++|-... +..+++..++..|.++.++.
T Consensus 4 ~~~~~~vlItGasgg--IG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06057 4 RLAGRVAVITGGGSG--IGLATARRLAAEGATVVVGD 38 (255)
T ss_pred cCCCCEEEEECCCch--HHHHHHHHHHHcCCEEEEEe
Confidence 478899999998665 99999999999999988874
No 414
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.71 E-value=72 Score=22.10 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=28.8
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++++++.+.|-.. .+..+++..++.-|.+|++++-
T Consensus 5 ~~~~~vlVtG~sg--~iG~~l~~~L~~~G~~Vi~~~r 39 (239)
T PRK07666 5 LQGKNALITGAGR--GIGRAVAIALAKEGVNVGLLAR 39 (239)
T ss_pred CCCCEEEEEcCCc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 5678888999654 4999999999889999988874
No 415
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=53.64 E-value=45 Score=26.36 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=33.6
Q ss_pred cEEEEECCCCCchhHHHHHHH--HhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411 41 LTITMVGDLKNGRTVHSLARL--LTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~--~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~ 95 (99)
.||.+++-+..|-+.+++.++ +.+-|.+|+++|++.| .+...+.|..+.
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~------~~~ve~ag~~f~ 52 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKF------KEFVEAAGLAFV 52 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHH------HHHHHHhCccee
Confidence 477777655555687777775 7888999999999655 344455554443
No 416
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=53.60 E-value=88 Score=25.28 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=27.5
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
..|+|+++++.|++. -+.+++.++.-+||+++.++
T Consensus 331 ~~L~GKrv~i~~g~~---~~~~~~~~l~ELGmevv~~g 365 (466)
T TIGR01282 331 PRLEGKTVMLYVGGL---RPRHVIGAFEDLGMEVIGTG 365 (466)
T ss_pred HhcCCCEEEEECCCC---cHHHHHHHHHHCCCEEEEEe
Confidence 569999999888764 35666667778999998775
No 417
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=53.47 E-value=33 Score=27.15 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=31.6
Q ss_pred HHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECC
Q psy4411 33 EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSP 74 (99)
Q Consensus 33 e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P 74 (99)
..++.+.+.+++++|-+. ++...+..+...|. +++++.+
T Consensus 175 ~~~~~~~~~~vlViGaG~---iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 175 QIFGDLSGKKVLVIGAGE---MGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred HhhCCccCCEEEEECchH---HHHHHHHHHHHCCCCeEEEEeC
Confidence 345678999999999854 88888888888897 7877766
No 418
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=53.40 E-value=25 Score=27.51 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=28.6
Q ss_pred EECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCC-CHHHHHH
Q psy4411 45 MVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGM-PESIQEF 86 (99)
Q Consensus 45 ~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~-~~~~~~~ 86 (99)
-.||..| |-.--|-.+...+|-++.+++|-+|.. +++.+++
T Consensus 153 NSgd~SN-~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~ 194 (322)
T PRK02797 153 NSGDRSN-RHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEE 194 (322)
T ss_pred CCCCCcc-cHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHH
Confidence 3467776 666666666677899999999999942 4444443
No 419
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=53.25 E-value=25 Score=23.23 Aligned_cols=29 Identities=7% Similarity=0.016 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411 67 VKLNYVSPPNLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 67 ~~v~~~~P~~~~~~~~~~~~a~~~g~~~~ 95 (99)
.++.-++-.+..+++..++.+++.|++++
T Consensus 27 ~~v~SaG~~~~~~~~~a~~~l~e~Gid~~ 55 (129)
T TIGR02691 27 WEVYSAGIEAHGLNPNAVKAMKEVGIDIS 55 (129)
T ss_pred EEEEcCCCCCCCcCHHHHHHHHHcCCCcC
Confidence 44445544445688889999999988764
No 420
>PRK12359 flavodoxin FldB; Provisional
Probab=53.22 E-value=44 Score=23.45 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=31.4
Q ss_pred CCCCcEEEEECCCCCc-------hhHHHHHHHHhhCCCEEEEECC-CCCCCCH
Q psy4411 37 RVNGLTITMVGDLKNG-------RTVHSLARLLTLYDVKLNYVSP-PNLGMPE 81 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~-------rv~~Sl~~~~~~~G~~v~~~~P-~~~~~~~ 81 (99)
.|+|+++++.|=+... ..+..+...+...|++++-..| .||...+
T Consensus 76 dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~ 128 (172)
T PRK12359 76 NLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTS 128 (172)
T ss_pred CCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCccccc
Confidence 4899999998743321 1224577777778999888877 6887654
No 421
>PRK07063 short chain dehydrogenase; Provisional
Probab=52.98 E-value=42 Score=23.74 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=31.2
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+.++++++.+.|-..- +.++++..++.-|.+|++++-
T Consensus 3 ~~l~~k~vlVtGas~g--IG~~~a~~l~~~G~~vv~~~r 39 (260)
T PRK07063 3 NRLAGKVALVTGAAQG--IGAAIARAFAREGAAVALADL 39 (260)
T ss_pred cccCCCEEEEECCCch--HHHHHHHHHHHCCCEEEEEeC
Confidence 4578899999997654 999999999999999888764
No 422
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=52.91 E-value=43 Score=26.36 Aligned_cols=36 Identities=8% Similarity=0.165 Sum_probs=29.2
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHh-hCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLT-LYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~-~~G~~v~~~~P 74 (99)
..+.|+++++.||.. -+.++...+. -+||+++.++.
T Consensus 284 ~~l~Gk~vai~~~~~---~~~~la~~l~~elG~~v~~i~~ 320 (415)
T cd01977 284 ERLKGKKVCIWTGGP---KLWHWTKVIEDELGMQVVAMSS 320 (415)
T ss_pred HHcCCCEEEEECCCc---hHHHHHHHHHHhcCCEEEEEEE
Confidence 458999999999875 4588888887 69999988764
No 423
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=52.89 E-value=74 Score=21.96 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=23.9
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
++.+.|-... +..+++..++..|.++.+..
T Consensus 3 ~~lItGa~g~--iG~~l~~~l~~~g~~v~~~~ 32 (247)
T PRK09730 3 IALVTGGSRG--IGRATALLLAQEGYTVAVNY 32 (247)
T ss_pred EEEEeCCCch--HHHHHHHHHHHCCCEEEEEe
Confidence 5777787554 99999999999999987653
No 424
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=52.87 E-value=21 Score=26.45 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=32.9
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEE--------CCCCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYV--------SPPNL 77 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~--------~P~~~ 77 (99)
+++|+++++-|=++ |....+..+..+|+.++.+ .|+|+
T Consensus 29 ~l~g~~v~IqGfG~---VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gl 74 (244)
T PF00208_consen 29 SLEGKRVAIQGFGN---VGSHAARFLAELGAKVVAVSDSSGAIYDPDGL 74 (244)
T ss_dssp SSTTCEEEEEESSH---HHHHHHHHHHHTTEEEEEEEESSEEEEETTEE
T ss_pred CcCCCEEEEECCCH---HHHHHHHHHHHcCCEEEEEecCceEEEcCCCc
Confidence 48999999999843 9999999999999999888 57776
No 425
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.74 E-value=29 Score=26.81 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=27.9
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++|++||-+. +..+|+..++..|.+|++.-|
T Consensus 8 ~~VaVIGaG~---MG~giA~~~a~aG~~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGV---IGSGWVARALAHGLDVVAWDP 38 (321)
T ss_pred CEEEEECcCH---HHHHHHHHHHhCCCeEEEEeC
Confidence 5899999876 899999999999999998776
No 426
>PRK08303 short chain dehydrogenase; Provisional
Probab=52.66 E-value=95 Score=23.13 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=31.2
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++++|+++.+.|-..- +....+..++..|.+|++++-
T Consensus 4 ~~l~~k~~lITGgs~G--IG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 4 KPLRGKVALVAGATRG--AGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred cCCCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEEec
Confidence 4578899999997654 999999999999999988764
No 427
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=52.46 E-value=42 Score=21.75 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=26.3
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCE-EEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVK-LNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
+||.+|| +..+.++...|++ +..+..+.. -+.+.+.+.+.+..+
T Consensus 4 kIaVvGd-------~DtilGFrlaGi~~v~~~~~~e~--~~~~~~~l~~~~~gI 48 (104)
T PRK01189 4 CITVIGE-------RDVVLGFRLLGIGDTIEAEGKDL--VKKFLEIFNNPKCKY 48 (104)
T ss_pred eEEEEcC-------HHHHHHHHHcCCceEEEcCCHHH--HHHHHHHHhcCCeEE
Confidence 7999999 3456788888995 755444311 134444444444433
No 428
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=52.28 E-value=33 Score=25.40 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=27.4
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++|+++|-+. +..+++..++..|.+|++.-+
T Consensus 5 ~~V~vIG~G~---mG~~iA~~l~~~G~~V~~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQ---MGSGIAQLAAAAGMDVWLLDS 35 (295)
T ss_pred CEEEEECCCH---HHHHHHHHHHhcCCeEEEEeC
Confidence 5799999865 999999999999999998866
No 429
>KOG0572|consensus
Probab=51.74 E-value=51 Score=26.88 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=31.4
Q ss_pred CCCCcEEEEECCC-CCchhHHHHHHHHhhCC---CEEEEECCC
Q psy4411 37 RVNGLTITMVGDL-KNGRTVHSLARLLTLYD---VKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~-~n~rv~~Sl~~~~~~~G---~~v~~~~P~ 75 (99)
.++|++|++|-|. -.|++..-++.++.--| .++.+++|+
T Consensus 353 ~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAsPp 395 (474)
T KOG0572|consen 353 NFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPP 395 (474)
T ss_pred hcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEecCCc
Confidence 4899999999984 34558888888888778 588899996
No 430
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=51.59 E-value=62 Score=28.26 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=38.3
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCC----CCCHHH----HHHHHhcCCeEE
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL----GMPESI----QEFVASKGKQQE 95 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~----~~~~~~----~~~a~~~g~~~~ 95 (99)
.++++++||.+. +.--++..++.+|.+++++.+... .++++. .+.+++.|+++.
T Consensus 144 ~~k~vvVIGgG~---iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~ 205 (847)
T PRK14989 144 RSKRGAVVGGGL---LGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVH 205 (847)
T ss_pred cCCeEEEECCCH---HHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 457899999864 788888889999999998876433 234443 345667776654
No 431
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=51.59 E-value=86 Score=26.64 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=39.4
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC------------CCCCCHHHH----HHHHhcCCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP------------NLGMPESIQ----EFVASKGKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~------------~~~~~~~~~----~~a~~~g~~~~ 95 (99)
..+++|++||-+. ..-|.+..+++.|.+++++-+. .|.++++++ +.+++.|++|.
T Consensus 429 ~~~~~V~IIGaGp---AGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~ 499 (752)
T PRK12778 429 KNGKKVAVIGSGP---AGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFE 499 (752)
T ss_pred CCCCEEEEECcCH---HHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4578999999865 6778888889999999988642 234455554 34566777764
No 432
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=51.54 E-value=46 Score=26.73 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=37.0
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC--CCHHH----HHHHHhcCCeEE
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG--MPESI----QEFVASKGKQQE 95 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~--~~~~~----~~~a~~~g~~~~ 95 (99)
.+++++|.+. +.-.++..++.+|.+|+++..+... +++++ .+.+++.|+.+.
T Consensus 181 ~~vvIIGgG~---iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 181 GKTLVVGASY---VALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred CCEEEECCCH---HHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEE
Confidence 5799999875 7888999999999999999864221 23443 344667776654
No 433
>KOG0107|consensus
Probab=51.45 E-value=29 Score=25.26 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=30.0
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCC--CEEEEEC-CCCCCC
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYD--VKLNYVS-PPNLGM 79 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G--~~v~~~~-P~~~~~ 79 (99)
+-+=+|||++.+...-+-|=.++.+|| -+|-++. ||+|.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAF 51 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAF 51 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceE
Confidence 345689999888666789999999999 2555544 888864
No 434
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=51.44 E-value=62 Score=23.55 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=26.1
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+|+++|-++ +...++..++.-|.+|+++..
T Consensus 2 ~I~IiG~G~---~G~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGA---IGGLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred EEEEECCCH---HHHHHHHHHHhCCCeEEEEEC
Confidence 689999864 889999999999999999886
No 435
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=51.38 E-value=33 Score=27.97 Aligned_cols=39 Identities=31% Similarity=0.504 Sum_probs=33.4
Q ss_pred CCCCcEEEEECCC-CCchhHHHHHHHHhhCC---CEEEEECCC
Q psy4411 37 RVNGLTITMVGDL-KNGRTVHSLARLLTLYD---VKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~-~n~rv~~Sl~~~~~~~G---~~v~~~~P~ 75 (99)
.++|++|++|=|. ..|.+.+..+.++.+-| +++.++|||
T Consensus 345 ~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sPp 387 (471)
T PRK06781 345 VVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPP 387 (471)
T ss_pred ccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCCC
Confidence 3778999999994 66779999999999998 588999997
No 436
>PLN02712 arogenate dehydrogenase
Probab=51.24 E-value=30 Score=29.37 Aligned_cols=36 Identities=19% Similarity=0.038 Sum_probs=30.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
.+++.+|++||=+ ++..|++..+...|.+|....+.
T Consensus 366 ~~~~~kIgIIGlG---~mG~slA~~L~~~G~~V~~~dr~ 401 (667)
T PLN02712 366 DGSKLKIAIVGFG---NFGQFLAKTMVKQGHTVLAYSRS 401 (667)
T ss_pred CCCCCEEEEEecC---HHHHHHHHHHHHCcCEEEEEECC
Confidence 4788999999943 49999999999999998887764
No 437
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=51.11 E-value=58 Score=23.84 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=41.4
Q ss_pred HhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhc----CCeEEEE
Q psy4411 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASK----GKQQEVY 97 (99)
Q Consensus 34 ~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~----g~~~~~~ 97 (99)
..|.++|++|+=.|-++- .|..+++.+|.+-+++ .++|++-++.+++| ++.++..
T Consensus 40 ~~g~l~g~~V~DlG~GTG-----~La~ga~~lGa~~V~~----vdiD~~a~ei~r~N~~~l~g~v~f~ 98 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTG-----ILAIGAALLGASRVLA----VDIDPEALEIARANAEELLGDVEFV 98 (198)
T ss_pred HcCCcCCCEEEEcCCCcC-----HHHHHHHhcCCcEEEE----EecCHHHHHHHHHHHHhhCCceEEE
Confidence 468999999999998774 6888999999876665 45888887777644 4455543
No 438
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=51.03 E-value=50 Score=26.17 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=28.3
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+.|++++++|+.. .+.++..++.-+||++..+.-
T Consensus 297 ~l~gkrv~v~g~~~---~~~~l~~~L~elG~~~~~v~~ 331 (429)
T cd03466 297 YNFGRKAAIYGEPD---FVVAITRFVLENGMVPVLIAT 331 (429)
T ss_pred hcCCCEEEEEcCHH---HHHHHHHHHHHCCCEEEEEEe
Confidence 36899999999854 788999999999998755553
No 439
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=51.03 E-value=65 Score=24.32 Aligned_cols=61 Identities=10% Similarity=0.229 Sum_probs=39.6
Q ss_pred HHhcCCCC-cEEEEECCCCC--chhHHHHHHH-HhhCCC-EEEEECCCCCCCCHHHHHHHHhcCCe
Q psy4411 33 EEMGRVNG-LTITMVGDLKN--GRTVHSLARL-LTLYDV-KLNYVSPPNLGMPESIQEFVASKGKQ 93 (99)
Q Consensus 33 e~~g~l~g-~~i~~vGd~~n--~rv~~Sl~~~-~~~~G~-~v~~~~P~~~~~~~~~~~~a~~~g~~ 93 (99)
...++++. ..+++.|.+.. ++.+.+-+.. +...|. ++.+++-++|..-+.++++++++|.+
T Consensus 129 ~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP~~d~vi~~l~~~~~~ 194 (265)
T COG4822 129 DQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYPLVDTVIEYLRKNGIK 194 (265)
T ss_pred HhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCCcHHHHHHHHHHcCCc
Confidence 33455544 45677886543 2333333332 233466 89999999998888899999988854
No 440
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=50.94 E-value=54 Score=22.62 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=30.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
++++.+++.+|-... +.+..+..++..|.+++++...
T Consensus 25 ~l~~~~vlVlGgtG~--iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 25 DLKGKTAVVLGGTGP--VGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEcCC
Confidence 688999999996333 8888888888999999998763
No 441
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=50.82 E-value=35 Score=26.67 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=29.1
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+.+.+++++|-+ ++.+..+..+..+|++++++.+
T Consensus 165 l~~~~VlViGaG---~vG~~aa~~a~~lGa~V~v~d~ 198 (370)
T TIGR00518 165 VEPGDVTIIGGG---VVGTNAAKMANGLGATVTILDI 198 (370)
T ss_pred CCCceEEEEcCC---HHHHHHHHHHHHCCCeEEEEEC
Confidence 677889999985 4999999999999999888755
No 442
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=50.71 E-value=25 Score=25.85 Aligned_cols=61 Identities=21% Similarity=0.344 Sum_probs=30.8
Q ss_pred CCCcEEEEEC--CCCCc-hhHHHHHHHHhhCC-CEEEEECCCCCCCCHHHHHHHHhcCCeEEEEe
Q psy4411 38 VNGLTITMVG--DLKNG-RTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKGKQQEVYE 98 (99)
Q Consensus 38 l~g~~i~~vG--d~~n~-rv~~Sl~~~~~~~G-~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 98 (99)
-+|.+|-|+- |..|. .....+...+...| -.|.++-|..|.+...+.+.+++.|+.+++.+
T Consensus 60 ~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~~l~~~~~~~~i~~~~~~ 124 (224)
T PF04244_consen 60 AKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLEQRLESLAQQLGIPLEVLE 124 (224)
T ss_dssp HTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHHHHHHH----SSS-EEEE-
T ss_pred hCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHhhhcccCCceEEeC
Confidence 3578888884 43331 23455656666677 48888889888877777777788888888764
No 443
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=50.61 E-value=23 Score=30.00 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=17.2
Q ss_pred HHHhcCCCCcEEEEECCCCCch
Q psy4411 32 KEEMGRVNGLTITMVGDLKNGR 53 (99)
Q Consensus 32 ~e~~g~l~g~~i~~vGd~~n~r 53 (99)
+++.+.|+|+||++.|-.-||+
T Consensus 539 k~~t~HLkGlkI~IMGCIVNGP 560 (611)
T PRK02048 539 KEATSHLKGLKIGIMGCIVNGP 560 (611)
T ss_pred HHHhCCCCCceEEEEEeEecCC
Confidence 5667899999999999765533
No 444
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=50.37 E-value=49 Score=23.25 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=30.5
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
-+++++++.+.|-... +..+++..+++-|.++.++.
T Consensus 5 ~~l~~k~~lItGas~g--iG~~ia~~L~~~G~~vvl~~ 40 (254)
T PRK08085 5 FSLAGKNILITGSAQG--IGFLLATGLAEYGAEIIIND 40 (254)
T ss_pred ccCCCCEEEEECCCCh--HHHHHHHHHHHcCCEEEEEc
Confidence 3578899999997664 99999999999999988875
No 445
>PRK07109 short chain dehydrogenase; Provisional
Probab=50.18 E-value=72 Score=24.07 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=30.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.++++++.+.|-..- +..+++..++..|.+|++++-
T Consensus 5 ~l~~k~vlITGas~g--IG~~la~~la~~G~~Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAG--VGRATARAFARRGAKVVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEEC
Confidence 467889999997554 999999999999999988875
No 446
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=50.13 E-value=38 Score=27.07 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=29.1
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
..|.|+++++.+++. ...+++.++.-+||++..++
T Consensus 322 ~~L~Gkrv~i~~g~~---~~~~l~~~l~elGmevv~~~ 356 (456)
T TIGR01283 322 ERLKGKKAAIYTGGV---KSWSLVSALQDLGMEVVATG 356 (456)
T ss_pred HHcCCCEEEEEcCCc---hHHHHHHHHHHCCCEEEEEe
Confidence 458999999888764 56789999999999998875
No 447
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=50.09 E-value=37 Score=25.18 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=30.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCC-CEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G-~~v~~~~P 74 (99)
.+++++++++|-+ .++++.+..+...| .+++++..
T Consensus 120 ~~~~k~vlVlGaG---g~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAG---GAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCc---HHHHHHHHHHHHcCCCEEEEEeC
Confidence 6889999999974 49999999999999 68998876
No 448
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=49.88 E-value=39 Score=25.27 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=29.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P 74 (99)
.+++++++++|-+. ++++.+..+..+|. +++++.-
T Consensus 122 ~~~~k~vlvlGaGG---aarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 122 PLAGFRGLVIGAGG---TSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred ccCCceEEEEcCcH---HHHHHHHHHHHcCCCeEEEEeC
Confidence 47899999999876 89999999999996 6777753
No 449
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=49.70 E-value=62 Score=25.34 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=28.7
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
.+++++++|.+. ++--++..++++|.+|+++.+..
T Consensus 168 ~~k~v~VIGgG~---~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 168 LPKSLAVIGGGV---IGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred cCCeEEEECCCH---HHHHHHHHHHHcCCcEEEEecCC
Confidence 357899999865 77778888899999999998754
No 450
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=49.63 E-value=43 Score=26.73 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=33.5
Q ss_pred HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCC-EEEEECC
Q psy4411 32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDV-KLNYVSP 74 (99)
Q Consensus 32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~-~v~~~~P 74 (99)
.+.++++.++++.++|-+. +++..+..+...|. +++++.-
T Consensus 173 ~~~~~~l~~kkvlviGaG~---~a~~va~~L~~~g~~~I~V~nR 213 (414)
T PRK13940 173 KRQLDNISSKNVLIIGAGQ---TGELLFRHVTALAPKQIMLANR 213 (414)
T ss_pred HHHhcCccCCEEEEEcCcH---HHHHHHHHHHHcCCCEEEEECC
Confidence 5667899999999999865 88888888888885 7888876
No 451
>PRK06194 hypothetical protein; Provisional
Probab=49.63 E-value=94 Score=22.23 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=29.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.++++++.+.|-... +...++..++.-|.+|+++.-
T Consensus 3 ~~~~k~vlVtGasgg--IG~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 3 DFAGKVAVITGAASG--FGLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CCCCCEEEEeCCccH--HHHHHHHHHHHCCCEEEEEeC
Confidence 356788999997654 999999999999999888764
No 452
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=49.54 E-value=79 Score=25.64 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=33.6
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCC---CCHHHHHHH
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLG---MPESIQEFV 87 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~---~~~~~~~~a 87 (99)
++++++|-+. +.=-|+.+.++||.+|+++-....- .|+++.+.+
T Consensus 174 ~~lvIiGgG~---IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~ 220 (454)
T COG1249 174 KSLVIVGGGY---IGLEFASVFAALGSKVTVVERGDRILPGEDPEISKEL 220 (454)
T ss_pred CEEEEECCCH---HHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHH
Confidence 5799999876 8889999999999999999764332 356655443
No 453
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=49.53 E-value=1e+02 Score=23.30 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=30.4
Q ss_pred HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCC-CEEEEECC
Q psy4411 32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSP 74 (99)
Q Consensus 32 ~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G-~~v~~~~P 74 (99)
...++.+.+.+|+++|-+. +....+..+...| .+++++.+
T Consensus 170 ~~~~~~l~~~~V~ViGaG~---iG~~~a~~L~~~g~~~V~v~~r 210 (311)
T cd05213 170 EKIFGNLKGKKVLVIGAGE---MGELAAKHLAAKGVAEITIANR 210 (311)
T ss_pred HHHhCCccCCEEEEECcHH---HHHHHHHHHHHcCCCEEEEEeC
Confidence 3446778999999999854 7887777777766 57777765
No 454
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=49.17 E-value=32 Score=23.99 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=26.3
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhh-CCCEEEEECCCCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTL-YDVKLNYVSPPNL 77 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~-~G~~v~~~~P~~~ 77 (99)
.++|+|+.++||-.- +.---+..|.+ -|.++++.+.+=|
T Consensus 2 ~l~gkKviiiGdRDG--iPgpAie~c~~~~gaevvfs~TeCF 41 (150)
T PF04723_consen 2 ILEGKKVIIIGDRDG--IPGPAIEECVKTAGAEVVFSSTECF 41 (150)
T ss_pred ccCCcEEEEEecCCC--CCcHHHHHHHHhcCceEEEEeeeEE
Confidence 378999999998443 44444444444 5899988776533
No 455
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=49.09 E-value=87 Score=28.17 Aligned_cols=55 Identities=20% Similarity=0.099 Sum_probs=37.2
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhC-CC-EEEEECCCCCC---CCHHHHHHHHhcCCeEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLY-DV-KLNYVSPPNLG---MPESIQEFVASKGKQQE 95 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~-G~-~v~~~~P~~~~---~~~~~~~~a~~~g~~~~ 95 (99)
..|++|+++|.++ ++-..+..+.++ |. +|+++...... ..++.++.+.+.|+.+.
T Consensus 664 ~~GK~VVVIGGGn---vAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~aleeGVe~~ 723 (1012)
T TIGR03315 664 PLGKHVVVVGGGN---TAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALEDGVDFK 723 (1012)
T ss_pred ccCCeEEEECCCH---HHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHHHcCCEEE
Confidence 3589999999864 887888877777 75 78888764321 22334455556777653
No 456
>PRK07201 short chain dehydrogenase; Provisional
Probab=49.08 E-value=63 Score=26.33 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=31.6
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+.++++++.+.|-... +...++..++.-|.+|.+++.
T Consensus 367 ~~~~~k~vlItGas~g--iG~~la~~l~~~G~~V~~~~r 403 (657)
T PRK07201 367 GPLVGKVVLITGASSG--IGRATAIKVAEAGATVFLVAR 403 (657)
T ss_pred cCCCCCEEEEeCCCCH--HHHHHHHHHHHCCCEEEEEEC
Confidence 4578889999998664 999999999999999998875
No 457
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.98 E-value=49 Score=22.88 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=30.2
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++++++.+.|-.. .+...++..+..-|.+|++.+.
T Consensus 3 ~~~~~vlItGa~g--~iG~~~a~~l~~~G~~V~~~~r 37 (238)
T PRK05786 3 LKGKKVAIIGVSE--GLGYAVAYFALKEGAQVCINSR 37 (238)
T ss_pred cCCcEEEEECCCc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 6788999999865 4999999999999999988876
No 458
>KOG2941|consensus
Probab=48.96 E-value=44 Score=27.04 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=32.4
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHH
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQ 84 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~ 84 (99)
.-|+..||..+|+-.+--+..+++.|.+|.+++--+-.|.++++
T Consensus 15 a~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~ 58 (444)
T KOG2941|consen 15 AIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL 58 (444)
T ss_pred EEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh
Confidence 34556699888777778888999999999998864444555553
No 459
>PRK12742 oxidoreductase; Provisional
Probab=48.91 E-value=61 Score=22.35 Aligned_cols=35 Identities=9% Similarity=0.226 Sum_probs=29.5
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.++++++.+.|-... +.+.++..+...|.++++..
T Consensus 3 ~~~~k~vlItGasgg--IG~~~a~~l~~~G~~v~~~~ 37 (237)
T PRK12742 3 AFTGKKVLVLGGSRG--IGAAIVRRFVTDGANVRFTY 37 (237)
T ss_pred CCCCCEEEEECCCCh--HHHHHHHHHHHCCCEEEEec
Confidence 477899999998655 99999999999999987764
No 460
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=48.89 E-value=35 Score=27.59 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=32.6
Q ss_pred CCCCcEEEEECCC-CCchhHHHHHHHHhhCCC---EEEEECCC
Q psy4411 37 RVNGLTITMVGDL-KNGRTVHSLARLLTLYDV---KLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~-~n~rv~~Sl~~~~~~~G~---~v~~~~P~ 75 (99)
.++|++|++|=|. ..|.+.+..+..+..-|+ ++.+++||
T Consensus 331 ~v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~spp 373 (442)
T PRK08341 331 VINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPP 373 (442)
T ss_pred ccCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 4789999999994 556788888888888884 88999997
No 461
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=48.86 E-value=84 Score=25.55 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=60.4
Q ss_pred CCHHHHHHHHhhc-cCEEEEccCCchhH-HHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHH
Q psy4411 5 SNLIDTVAVLSGY-ADVIVLRHPEPGAV-KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPES 82 (99)
Q Consensus 5 Es~~Dta~vls~y-~D~iv~R~~~~~~~-~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~ 82 (99)
--+.|.+..|+.| +++-.+-+ +.+ .+=..+|.|.+...+.|-- -+-+|+.+++..|-++.+-.- .++--+.
T Consensus 191 PEIvDLa~~Ln~MGA~I~GaGT---~~I~I~GV~~L~g~~h~VipDRI---EAGT~~~aaA~tgg~v~i~~v-~~~hl~~ 263 (421)
T COG0766 191 PEIVDLANFLNKMGAKIEGAGT---STITIEGVEKLHGAEHSVIPDRI---EAGTFLVAAAITGGDVTIENV-RPEHLEA 263 (421)
T ss_pred chHHHHHHHHHHcCCeeEEcCC---CeEEEeccccccceeeEecCchh---hHHHHHHHHHHhCCcEEEeCC-CHHHHHH
Confidence 3478999999999 56554432 222 2223358899999999954 678999999999977766442 1112245
Q ss_pred HHHHHHhcCCeEEEEe
Q psy4411 83 IQEFVASKGKQQEVYE 98 (99)
Q Consensus 83 ~~~~a~~~g~~~~~~~ 98 (99)
+++++++.|+++++.+
T Consensus 264 ~~~kL~e~G~~~~~~~ 279 (421)
T COG0766 264 VLAKLREAGVDIEEGE 279 (421)
T ss_pred HHHHHHHhCCeEEEcC
Confidence 6788899999888754
No 462
>COG3233 Predicted deacetylase [General function prediction only]
Probab=48.79 E-value=31 Score=25.82 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=32.7
Q ss_pred HHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEE
Q psy4411 57 SLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQE 95 (99)
Q Consensus 57 Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~ 95 (99)
.-+..+.+.|..+.++.||.|.++++..+-+-++|.+|.
T Consensus 100 ~a~~~l~~~G~~~~~FvpPrwlmS~gt~~aL~~~~frv~ 138 (233)
T COG3233 100 AAIEELEALGFPLRGFVPPRWLMSEGTRQALLENNFRVT 138 (233)
T ss_pred HHHHHHHHcCCcceeecCcceecCHhHHHHhccCCcEEE
Confidence 445566778999999999999999999888888887775
No 463
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=48.73 E-value=97 Score=23.80 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=27.3
Q ss_pred CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 39 ~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.|.++++.|.+ .+....++++..+|+++..+.+
T Consensus 178 ~g~~VlV~G~G---~vG~~avq~Ak~~Ga~Vi~~~~ 210 (375)
T PLN02178 178 SGKRLGVNGLG---GLGHIAVKIGKAFGLRVTVISR 210 (375)
T ss_pred CCCEEEEEccc---HHHHHHHHHHHHcCCeEEEEeC
Confidence 57889888874 4999999999999999777655
No 464
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=48.66 E-value=57 Score=23.35 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=27.3
Q ss_pred EEEEECCCC-------C---chhHHHHHHHHhhCCCEEEEECCCCC
Q psy4411 42 TITMVGDLK-------N---GRTVHSLARLLTLYDVKLNYVSPPNL 77 (99)
Q Consensus 42 ~i~~vGd~~-------n---~rv~~Sl~~~~~~~G~~v~~~~P~~~ 77 (99)
||+++++.. . .+....++..+.+.|.++.+++|.+.
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 677777642 1 15678899999999999999998654
No 465
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=48.60 E-value=24 Score=27.78 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=28.4
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEE
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYV 72 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~ 72 (99)
..++|+++++.||.. .+.++..++..+|+++..+
T Consensus 295 ~~l~gk~v~i~~~~~---~~~~l~~~L~e~G~~v~~v 328 (428)
T cd01965 295 FYLGGKRVAIAGDPD---LLLGLSRFLLEMGAEPVAA 328 (428)
T ss_pred HHhcCCEEEEEcChH---HHHHHHHHHHHcCCcceEE
Confidence 358999999999865 6789999999999887654
No 466
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=48.51 E-value=1.1e+02 Score=24.04 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=39.8
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeEEE
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV 96 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~ 96 (99)
--.|.+|+++|=+. +.|..++.+..+|++|+.++= .++-.+.|++-|++.-+
T Consensus 164 ~~pG~~V~I~G~GG---lGh~avQ~Aka~ga~Via~~~-----~~~K~e~a~~lGAd~~i 215 (339)
T COG1064 164 VKPGKWVAVVGAGG---LGHMAVQYAKAMGAEVIAITR-----SEEKLELAKKLGADHVI 215 (339)
T ss_pred CCCCCEEEEECCcH---HHHHHHHHHHHcCCeEEEEeC-----ChHHHHHHHHhCCcEEE
Confidence 34589999999873 999999999999999988764 33455667777766544
No 467
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=48.47 E-value=35 Score=27.88 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=33.0
Q ss_pred CCCCcEEEEECCC-CCchhHHHHHHHHhhCC---CEEEEECCCC
Q psy4411 37 RVNGLTITMVGDL-KNGRTVHSLARLLTLYD---VKLNYVSPPN 76 (99)
Q Consensus 37 ~l~g~~i~~vGd~-~n~rv~~Sl~~~~~~~G---~~v~~~~P~~ 76 (99)
.++|++|++|=|. ..|.+.+..+.++...| ++++++|||-
T Consensus 353 ~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sPpi 396 (474)
T PRK06388 353 VISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHI 396 (474)
T ss_pred cccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 3678999999994 55678888888888888 5899999973
No 468
>PRK06184 hypothetical protein; Provisional
Probab=48.45 E-value=65 Score=25.67 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=26.5
Q ss_pred CcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 40 g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
...|++||-+. +.=+++..+++.|.+++++=
T Consensus 3 ~~dVlIVGaGp---aGl~~A~~La~~Gi~v~viE 33 (502)
T PRK06184 3 TTDVLIVGAGP---TGLTLAIELARRGVSFRLIE 33 (502)
T ss_pred CCcEEEECCCH---HHHHHHHHHHHCCCcEEEEe
Confidence 35789999876 88899999999999999884
No 469
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.41 E-value=90 Score=21.65 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=27.3
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
++++++.+.|-... +..+++..++..|.++++..
T Consensus 4 ~~~~~vlitGasg~--iG~~l~~~l~~~g~~v~~~~ 37 (252)
T PRK06077 4 LKDKVVVVTGSGRG--IGRAIAVRLAKEGSLVVVNA 37 (252)
T ss_pred CCCcEEEEeCCCCh--HHHHHHHHHHHCCCEEEEEe
Confidence 56788999997554 99999999999999876643
No 470
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=48.32 E-value=29 Score=27.59 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=31.1
Q ss_pred CcEEEEE---CCCCCchhHHHHHHHHhhCCCEEEEECCCCCCC-CHHHHHHH
Q psy4411 40 GLTITMV---GDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGM-PESIQEFV 87 (99)
Q Consensus 40 g~~i~~v---Gd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~-~~~~~~~a 87 (99)
+.....+ ||..| |-.--|-.+...+|-++.+++|-+|.- +++.+++.
T Consensus 184 ~~ltILvGNSgd~sN-nHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V 234 (360)
T PF07429_consen 184 GKLTILVGNSGDPSN-NHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQV 234 (360)
T ss_pred CceEEEEcCCCCCCc-cHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHH
Confidence 3334445 46666 566566666667899999999999964 45555443
No 471
>PRK08339 short chain dehydrogenase; Provisional
Probab=48.05 E-value=78 Score=22.68 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=30.7
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++|+++.+.|-..- +...++..++..|.+|.+++-
T Consensus 5 ~l~~k~~lItGas~g--IG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 5 DLSGKLAFTTASSKG--IGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CCCCCEEEEeCCCCc--HHHHHHHHHHHCCCEEEEEeC
Confidence 478889999998665 999999999999999888764
No 472
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=48.05 E-value=27 Score=28.69 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=26.9
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEE
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYV 72 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~ 72 (99)
.+.|+|+++.||+. -+.++...+.-+||+++.+
T Consensus 360 ~l~GKrvaI~gdpd---~~~~l~~fL~ElGmepv~v 392 (515)
T TIGR01286 360 WLHGKRFAIYGDPD---FVMGLVRFVLELGCEPVHI 392 (515)
T ss_pred HhcCceEEEECCHH---HHHHHHHHHHHCCCEEEEE
Confidence 48899999999975 6778888888899986644
No 473
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=47.93 E-value=44 Score=27.12 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=23.1
Q ss_pred HhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 34 ~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
++-..+|.+|.|+||...|=++.| -...|-.-..+-||
T Consensus 289 ~ll~~~g~~VLY~GDhi~~Di~~~----k~~~gWrT~~Ii~E 326 (448)
T PF05761_consen 289 KLLGWRGKEVLYFGDHIYGDILKS----KKRHGWRTAAIIPE 326 (448)
T ss_dssp HHCT--GGGEEEEESSTTTTHHHH----HHHH-SEEEEE-TT
T ss_pred HHHccCCCeEEEECCchhhhhhhh----ccccceEEEEEehh
Confidence 334567899999999766555544 34458777778774
No 474
>PHA03200 uracil DNA glycosylase; Provisional
Probab=47.76 E-value=35 Score=25.87 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=27.5
Q ss_pred cCCCCcEEEEEC-CCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHH
Q psy4411 36 GRVNGLTITMVG-DLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFV 87 (99)
Q Consensus 36 g~l~g~~i~~vG-d~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a 87 (99)
-.++..||+++| |+.++.-+ .|.- +..|++..+|+.+...-
T Consensus 80 tp~~~vKVVIlGQDPYh~gqA---------~GLa--FSV~~~~~~PpSL~NIf 121 (255)
T PHA03200 80 CSPEDVKVVIVGQDPYHDGSA---------CGLA--FGTVRGRSAPPSLKNVF 121 (255)
T ss_pred CChhheEEEEEecCCCCCCcc---------ceEE--EEeCCCCCCCccHHHHH
Confidence 468899999999 88772222 2433 45688888887765443
No 475
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=47.72 E-value=52 Score=23.07 Aligned_cols=29 Identities=21% Similarity=0.043 Sum_probs=22.7
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
||+.+|-+. +.-.++..++.-|.+|+.+=
T Consensus 2 ~I~ViGlGy---vGl~~A~~lA~~G~~V~g~D 30 (185)
T PF03721_consen 2 KIAVIGLGY---VGLPLAAALAEKGHQVIGVD 30 (185)
T ss_dssp EEEEE--ST---THHHHHHHHHHTTSEEEEE-
T ss_pred EEEEECCCc---chHHHHHHHHhCCCEEEEEe
Confidence 789999866 89999999999999887654
No 476
>PRK05854 short chain dehydrogenase; Provisional
Probab=47.62 E-value=52 Score=24.46 Aligned_cols=37 Identities=16% Similarity=0.095 Sum_probs=31.6
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+++|+++.+.|-.. .+...++..+++-|.+|++++-
T Consensus 10 ~~l~gk~~lITGas~--GIG~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 10 PDLSGKRAVVTGASD--GLGLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred cccCCCEEEEeCCCC--hHHHHHHHHHHHCCCEEEEEeC
Confidence 468899999999855 4999999999999999998875
No 477
>PRK06523 short chain dehydrogenase; Provisional
Probab=47.10 E-value=58 Score=22.92 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=30.6
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
.+++|+++.+.|-... +..+++..++..|.+|.+++
T Consensus 5 ~~~~~k~vlItGas~g--IG~~ia~~l~~~G~~v~~~~ 40 (260)
T PRK06523 5 LELAGKRALVTGGTKG--IGAATVARLLEAGARVVTTA 40 (260)
T ss_pred cCCCCCEEEEECCCCc--hhHHHHHHHHHCCCEEEEEe
Confidence 3578899999997654 99999999999999988776
No 478
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=47.07 E-value=95 Score=21.55 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=28.5
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++++++.+.|.... +...++..+...|.++.+.+-
T Consensus 2 ~~~~~vlItG~sg~--iG~~la~~l~~~g~~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASG--IGLEIALALAKEGAKVVIADL 36 (258)
T ss_pred CCCCEEEEECCCch--HHHHHHHHHHHCCCeEEEEeC
Confidence 45788999998665 899999988888999887754
No 479
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.07 E-value=62 Score=23.49 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=30.7
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
+.++|+++.+.|-..++.+...++..++..|.+|.+++
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~ 43 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTY 43 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 34778888888975333699999999999999998875
No 480
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=47.00 E-value=33 Score=27.38 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=28.9
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
..+.|+++++.||.. -+.+++..+.-+||++..+.
T Consensus 307 ~~l~Gkrvai~~~~~---~~~~l~~~l~elGm~v~~~~ 341 (432)
T TIGR01285 307 FFLGGKKVAIAAEPD---LLAAWATFFTSMGAQIVAAV 341 (432)
T ss_pred HhhCCCEEEEEcCHH---HHHHHHHHHHHCCCEEEEEE
Confidence 358899999999864 67899999999999886665
No 481
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=46.94 E-value=1.2e+02 Score=22.55 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCHHHHHHHHhh-c-cCEEEEccCCchhHHHHhcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC----CC
Q psy4411 5 SNLIDTVAVLSG-Y-ADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN----LG 78 (99)
Q Consensus 5 Es~~Dta~vls~-y-~D~iv~R~~~~~~~~e~~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~----~~ 78 (99)
++++.-++-|+. | .|+|-++..+.+.+.+..+.+ ...+.+|--+.. ++-|.-++ . ++++ +.+|.. -.
T Consensus 45 ~~~~~d~~~l~~~yg~~gv~i~~~np~~l~~~V~k~-~~~vv~V~GGd~-~vNR~AvE---~-~VDV-L~~P~~~Rkd~g 117 (216)
T PRK03892 45 GSLKEELKELKKEYGKVAILLVTPKPSLIREVKQRF-LNYLIYVQGGDL-RVNRYAIE---R-GVDA-IISPWVGRKDPG 117 (216)
T ss_pred hhhHHHHHHHHHhcCcceEEEecCCHHHHHHHHHhc-cceEEEEECCcH-HHHHHHHh---c-ccce-eecccccCcCCC
Confidence 344444555554 6 689999999998887777777 456666622222 24454433 3 6664 346632 23
Q ss_pred CCHHHHHHHHhcCCeEEEE
Q psy4411 79 MPESIQEFVASKGKQQEVY 97 (99)
Q Consensus 79 ~~~~~~~~a~~~g~~~~~~ 97 (99)
++--+...|.++|+.+++.
T Consensus 118 ~dHVLAKlAa~n~VAIe~~ 136 (216)
T PRK03892 118 IDHVLARMAAKRGVAIGFS 136 (216)
T ss_pred ccHHHHHHHHHcCeEEEEe
Confidence 5555666678899888874
No 482
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=46.76 E-value=56 Score=23.14 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=30.6
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+.++++++.+.|-... +.+.++..++..|.+|.++.-
T Consensus 2 ~~~~~k~vlVtGas~g--IG~~ia~~l~~~G~~V~~~~r 38 (263)
T PRK06200 2 GWLHGQVALITGGGSG--IGRALVERFLAEGARVAVLER 38 (263)
T ss_pred CCCCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEEeC
Confidence 3467889999997654 999999999999999888763
No 483
>PRK06756 flavodoxin; Provisional
Probab=46.72 E-value=82 Score=20.71 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=34.6
Q ss_pred CCCCcEEEEECCCCC-----chhHHHHHHHHhhCCCEEEEECCC---CCCCCHHHHHHHHhc
Q psy4411 37 RVNGLTITMVGDLKN-----GRTVHSLARLLTLYDVKLNYVSPP---NLGMPESIQEFVASK 90 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n-----~rv~~Sl~~~~~~~G~~v~~~~P~---~~~~~~~~~~~a~~~ 90 (99)
.++|++++..|-+.+ +.....+...+.+.|+++.. |+ .+.|+++-++.+++.
T Consensus 80 ~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~--~~~~~~~~p~~~d~~~~~~~ 139 (148)
T PRK06756 80 DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVL--EGLKVELTPEDEDVEKCLQF 139 (148)
T ss_pred CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcC--CCeEEecCCCHHHHHHHHHH
Confidence 578999999964222 35778888888988977543 31 345666666665543
No 484
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=46.63 E-value=74 Score=25.11 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=33.5
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCCHHHHHHHHhcCCeE
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~ 94 (99)
-|+|+||++||-++.| |..++-+.--|.+|++.-.++- .-.+.|++.|.++
T Consensus 15 ~LkgK~iaIIGYGsQG---~ahalNLRDSGlnViiGlr~g~----~s~~kA~~dGf~V 65 (338)
T COG0059 15 LLKGKKVAIIGYGSQG---HAQALNLRDSGLNVIIGLRKGS----SSWKKAKEDGFKV 65 (338)
T ss_pred HhcCCeEEEEecChHH---HHHHhhhhhcCCcEEEEecCCc----hhHHHHHhcCCEe
Confidence 4899999999998763 3333334445888888776543 2256677777543
No 485
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.53 E-value=1e+02 Score=24.62 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=30.5
Q ss_pred hcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC
Q psy4411 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN 76 (99)
Q Consensus 35 ~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~ 76 (99)
|.++++++|.++|=+. ...|++..+...|.+|+..=...
T Consensus 2 ~~~~~~~~i~v~G~G~---sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 2 FGDLQGPMVLVLGLGE---SGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred ccccCCCEEEEEeecH---hHHHHHHHHHHCCCEEEEEcCCC
Confidence 4457788999999765 55789999999999988765543
No 486
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.36 E-value=66 Score=23.75 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=26.4
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+|+++|-+. +..+++..++..|.+|++.-+
T Consensus 2 ~~V~VIG~G~---mG~~iA~~la~~G~~V~~~d~ 32 (288)
T PRK09260 2 EKLVVVGAGV---MGRGIAYVFAVSGFQTTLVDI 32 (288)
T ss_pred cEEEEECccH---HHHHHHHHHHhCCCcEEEEeC
Confidence 4799999865 889999999999999988755
No 487
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=46.34 E-value=42 Score=24.85 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=27.0
Q ss_pred cEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 41 ~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
++|+++|-+. +..+++..++.-|.+|++.-+
T Consensus 4 ~~I~ViGaG~---mG~~iA~~la~~G~~V~l~d~ 34 (291)
T PRK06035 4 KVIGVVGSGV---MGQGIAQVFARTGYDVTIVDV 34 (291)
T ss_pred cEEEEECccH---HHHHHHHHHHhcCCeEEEEeC
Confidence 5799999865 899999999999999988765
No 488
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=46.27 E-value=1.3e+02 Score=23.77 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=27.4
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
-.+++|++||-+. ..-+.+..+++.|.+++++-.
T Consensus 138 ~~~~~VvIIGgGp---aGl~aA~~l~~~g~~V~lie~ 171 (457)
T PRK11749 138 KTGKKVAVIGAGP---AGLTAAHRLARKGYDVTIFEA 171 (457)
T ss_pred cCCCcEEEECCCH---HHHHHHHHHHhCCCeEEEEcc
Confidence 3568999999865 566788888899999998864
No 489
>PRK07856 short chain dehydrogenase; Provisional
Probab=46.25 E-value=59 Score=22.85 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=30.5
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++++++.+.|-..- +.+.++..++.-|.+|.+.+-
T Consensus 3 ~~~~k~~lItGas~g--IG~~la~~l~~~g~~v~~~~r 38 (252)
T PRK07856 3 DLTGRVVLVTGGTRG--IGAGIARAFLAAGATVVVCGR 38 (252)
T ss_pred CCCCCEEEEeCCCch--HHHHHHHHHHHCCCEEEEEeC
Confidence 367899999998665 999999999999999888764
No 490
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=46.24 E-value=1.1e+02 Score=22.10 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=27.4
Q ss_pred hcCCCCcEEEEECCCCCchhHHHHHHHHhhCCCE-EEEEC
Q psy4411 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVK-LNYVS 73 (99)
Q Consensus 35 ~g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~-v~~~~ 73 (99)
.+...|.++++.|.+ .+....++++..+|.+ +..+.
T Consensus 116 ~~~~~g~~VlV~G~G---~vG~~~~~~ak~~G~~~Vi~~~ 152 (280)
T TIGR03366 116 AGDLKGRRVLVVGAG---MLGLTAAAAAAAAGAARVVAAD 152 (280)
T ss_pred ccCCCCCEEEEECCC---HHHHHHHHHHHHcCCCEEEEEC
Confidence 344578899988874 3999999999999987 65553
No 491
>PRK08265 short chain dehydrogenase; Provisional
Probab=46.22 E-value=60 Score=23.10 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=30.3
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
+++++++.+.|-... +.+.++..+++.|.+|.+.+-
T Consensus 3 ~~~~k~vlItGas~g--IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGATL--IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CCCCCEEEEECCCCh--HHHHHHHHHHHCCCEEEEEeC
Confidence 467889999997654 999999999999999888764
No 492
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=45.69 E-value=84 Score=25.02 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=38.5
Q ss_pred CCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCC------------CCCCHHHH----HHHHhcCCeEEE
Q psy4411 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPN------------LGMPESIQ----EFVASKGKQQEV 96 (99)
Q Consensus 38 l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~------------~~~~~~~~----~~a~~~g~~~~~ 96 (99)
-.+++|++||-+. ..-+.+..+++.|.+++++-... |..+.+++ +++++.|+.+..
T Consensus 141 ~~~~~VvIIGaGp---AGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 141 RTGKKVAVVGSGP---AGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCCCEEEEECcCH---HHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 3568999999975 66778888889999999886431 22344433 446677776643
No 493
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.65 E-value=69 Score=22.93 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=30.2
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
|.++|+++.+.|-..++.+...++..+++-|.+|.+++
T Consensus 4 ~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 4 GLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred cccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEe
Confidence 56788888888986532488999999999999988875
No 494
>PRK07062 short chain dehydrogenase; Provisional
Probab=45.60 E-value=1.1e+02 Score=21.67 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=31.4
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~ 75 (99)
+++|+++.+.|-... +...++..++..|.+|.+++..
T Consensus 5 ~l~~k~~lItGas~g--iG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 5 QLEGRVAVVTGGSSG--IGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred ccCCCEEEEeCCCch--HHHHHHHHHHHCCCeEEEEeCC
Confidence 478899999997665 9999999999999999888753
No 495
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=45.60 E-value=1.3e+02 Score=22.81 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=51.5
Q ss_pred CCHHHHHHHHhhccCEEEEccCCchhHHHHhcCC----CCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECCCCCCCC
Q psy4411 5 SNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRV----NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMP 80 (99)
Q Consensus 5 Es~~Dta~vls~y~D~iv~R~~~~~~~~e~~g~l----~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~ 80 (99)
+|+++.-..+..=+|+|++-.+..+.+++....+ .+..+...|..+ -+.+...+..|.++...+-.-+..|
T Consensus 196 ~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l~~~~~~~~leasGGI~-----~~ni~~ya~~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 196 DTIEQALTVLQASPDILQLDKFTPQQLHHLHERLKFFDHIPTLAAAGGIN-----PENIADYIEAGIDLFITSAPYYAAP 270 (277)
T ss_pred CCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHhccCCCEEEEEECCCC-----HHHHHHHHhcCCCEEEeCcceecCc
Confidence 6788888888877999999988888884433222 346788888754 3455667888999988876544444
Q ss_pred H
Q psy4411 81 E 81 (99)
Q Consensus 81 ~ 81 (99)
-
T Consensus 271 ~ 271 (277)
T TIGR01334 271 C 271 (277)
T ss_pred c
Confidence 3
No 496
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=45.57 E-value=96 Score=21.16 Aligned_cols=54 Identities=24% Similarity=0.201 Sum_probs=34.4
Q ss_pred EEEEECCCCCchhHHHHHHHHhhCC-CEEEEECCCC-CCC-CHHHHHHHHhcCCeEEEE
Q psy4411 42 TITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPN-LGM-PESIQEFVASKGKQQEVY 97 (99)
Q Consensus 42 ~i~~vGd~~n~rv~~Sl~~~~~~~G-~~v~~~~P~~-~~~-~~~~~~~a~~~g~~~~~~ 97 (99)
++.++|... .+...++..++.-| .++.+++..+ -.. ..+.++.+++.|..++..
T Consensus 2 tylitGG~g--glg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~ 58 (181)
T PF08659_consen 2 TYLITGGLG--GLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYV 58 (181)
T ss_dssp EEEEETTTS--HHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEE
T ss_pred EEEEECCcc--HHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeee
Confidence 456667544 48888888877776 5888888763 222 234667777777777654
No 497
>PRK02929 L-arabinose isomerase; Provisional
Probab=45.52 E-value=87 Score=25.82 Aligned_cols=69 Identities=13% Similarity=0.055 Sum_probs=46.6
Q ss_pred CHHHHHHHHhhc---cCEEEEccCCchhHHHH----------hcCCCCcEEEEECCCCCchhH---HHHHHHHhhCCCEE
Q psy4411 6 NLIDTVAVLSGY---ADVIVLRHPEPGAVKEE----------MGRVNGLTITMVGDLKNGRTV---HSLARLLTLYDVKL 69 (99)
Q Consensus 6 s~~Dta~vls~y---~D~iv~R~~~~~~~~e~----------~g~l~g~~i~~vGd~~n~rv~---~Sl~~~~~~~G~~v 69 (99)
....++.+|+|+ ...|. =+.++..++++ ...+++.||+.+||..+ .|. --++.+-.+||.+|
T Consensus 129 G~~e~~~il~R~gi~~~~v~-G~~~d~~v~~~i~~w~raa~v~~~lr~~rig~~G~~m~-~v~vtEgd~~~~~~~fG~~V 206 (499)
T PRK02929 129 GDREFGFIGARLRKQRKVVV-GHWQDPEVQERIGAWMRVAAAWQESRHLKVARFGDNMR-NVAVTEGDKVEAQIKFGWSV 206 (499)
T ss_pred ChHHHHHHHHHcCCCeeEEE-EeCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEECCchh-hcccCcchHHHHHHHhCcEE
Confidence 346788899998 24444 55555555322 24699999999999533 333 25556779999999
Q ss_pred EEECCCC
Q psy4411 70 NYVSPPN 76 (99)
Q Consensus 70 ~~~~P~~ 76 (99)
....+..
T Consensus 207 ~~~~~~e 213 (499)
T PRK02929 207 NTWGVGD 213 (499)
T ss_pred EEecHHH
Confidence 8887643
No 498
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.52 E-value=50 Score=26.19 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=27.1
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEEC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVS 73 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~ 73 (99)
..+.|+++++.|+... +.+++.++.-+||+++.++
T Consensus 296 ~~L~Gkrv~i~~g~~~---~~~~~~~l~elGmevv~~g 330 (421)
T cd01976 296 PRLEGKTVMLYVGGLR---PRHYIGAYEDLGMEVVGTG 330 (421)
T ss_pred HHcCCCEEEEECCCCc---HHHHHHHHHHCCCEEEEEE
Confidence 5689999999987553 4566667778999999874
No 499
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=45.47 E-value=1e+02 Score=21.30 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=29.4
Q ss_pred CCCCcEEEEECCCCCchhHHHHHHHHhhCCCEEEEECC
Q psy4411 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSP 74 (99)
Q Consensus 37 ~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G~~v~~~~P 74 (99)
.+.++++.+.|-... +..+++..+...|.+|++++-
T Consensus 3 ~~~~~~ilItGasg~--iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARG--IGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCc--HHHHHHHHHHHCCCEEEEEeC
Confidence 356789999997665 999999999999998877763
No 500
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=45.36 E-value=41 Score=26.54 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=28.5
Q ss_pred cCCCCcEEEEECCCCCchhHHHHHHHHhhCC-CEEEEECC
Q psy4411 36 GRVNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSP 74 (99)
Q Consensus 36 g~l~g~~i~~vGd~~n~rv~~Sl~~~~~~~G-~~v~~~~P 74 (99)
..++|+++++.|+.. .+.+++..+.-+| |++..++-
T Consensus 289 ~~l~Gk~~~i~~~~~---~~~~~~~~l~elG~~~v~~~~~ 325 (426)
T cd01972 289 KALKGKKAIVETGAA---YGHLLIAVLRELGFGEVPVVLV 325 (426)
T ss_pred HHhCCCEEEEEeCCc---cHHHHHHHHHHcCCceEEEEEe
Confidence 348999999999876 5667777788999 99887643
Done!