RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4411
(99 letters)
>gnl|CDD|233083 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase. Aspartate
transcarbamylase (ATCase) is an alternate name.PyrB
encodes the catalytic chain of aspartate
carbamoyltransferase, an enzyme of pyrimidine
biosynthesis, which organizes into trimers. In some
species, including E. coli and the Archaea but excluding
Bacillus subtilis, a regulatory subunit PyrI is also
present in an allosterically regulated hexameric
holoenzyme. Several molecular weight classes of ATCase
are described in MEDLINE:96303527 and often vary within
taxa. PyrB and PyrI are fused in Thermotoga
maritima.Ornithine carbamoyltransferases are in the same
superfamily and form an outgroup [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 301
Score = 99.4 bits (248), Expect = 8e-27
Identities = 48/126 (38%), Positives = 62/126 (49%), Gaps = 32/126 (25%)
Query: 6 NLIDTVAVLSGYADVIVLRHPEPGA--------------------------------VKE 33
L DT+ LSGY D IV+RHP GA + E
Sbjct: 84 TLADTIKTLSGYVDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYE 143
Query: 34 EMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
E GR++GL I +VGDLK GRTVHSLA LT + V++ +SP L MP+ I E + +KG +
Sbjct: 144 EFGRLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIK 203
Query: 94 QEVYER 99
E
Sbjct: 204 VRETES 209
>gnl|CDD|178142 PLN02527, PLN02527, aspartate carbamoyltransferase.
Length = 306
Score = 96.7 bits (241), Expect = 8e-26
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 33/125 (26%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVKE--------------------------------E 34
L DT+ + GY+D+IVLRH E GA + E
Sbjct: 86 LEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQRE 145
Query: 35 MGRVNGLTITMVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKGKQ 93
+GR++G+ + +VGDL NGRTV SLA LL Y DVK+ +V+P + M + I++++ SKG +
Sbjct: 146 IGRLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVE 205
Query: 94 QEVYE 98
E
Sbjct: 206 WEESS 210
>gnl|CDD|223614 COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain
[Nucleotide transport and metabolism].
Length = 316
Score = 96.5 bits (241), Expect = 1e-25
Identities = 41/120 (34%), Positives = 54/120 (45%), Gaps = 34/120 (28%)
Query: 6 NLIDTVAVLSGY-ADVIVLRHPEPGA---------------------------------V 31
L DT+ LS Y D IV+RHPE GA +
Sbjct: 90 TLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVNPVINAGDGSHQHPTQALLDLYTI 149
Query: 32 KEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKG 91
+EE GR++GL I +VGDLK+ R HS + L + ++ VSP L PE I E + KG
Sbjct: 150 REEFGRLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKG 209
>gnl|CDD|169269 PRK08192, PRK08192, aspartate carbamoyltransferase; Provisional.
Length = 338
Score = 90.9 bits (226), Expect = 2e-23
Identities = 47/129 (36%), Positives = 63/129 (48%), Gaps = 37/129 (28%)
Query: 7 LIDTVAVLSGYADVIVLRHPEPGAVKE--EMGRV-------------------------- 38
L DT VLS Y+DVI +RHP+ G+VKE E RV
Sbjct: 90 LYDTARVLSTYSDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQKE 149
Query: 39 --------NGLTITMVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVAS 89
+G+ I MVGDLK GRTVHSL+RLL +Y +V VSP L MP+ + + +
Sbjct: 150 LAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIEN 209
Query: 90 KGKQQEVYE 98
G + + +
Sbjct: 210 AGHKITITD 218
>gnl|CDD|234849 PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit;
Provisional.
Length = 305
Score = 86.3 bits (215), Expect = 7e-22
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 34/114 (29%)
Query: 6 NLIDTVAVLSGY-ADVIVLRHPEPGAVK-------------------------------- 32
L DT+ LS AD IV+RHP+ GA +
Sbjct: 89 TLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVPVINAGDGSHQHPTQALLDLLTIR 148
Query: 33 EEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF 86
EE GR+ GL + +VGD+K+ R S + LT ++ ++PP L +PE + E+
Sbjct: 149 EEFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTL-LPEGMPEY 201
>gnl|CDD|183362 PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional.
Length = 429
Score = 81.8 bits (202), Expect = 8e-20
Identities = 48/125 (38%), Positives = 58/125 (46%), Gaps = 37/125 (29%)
Query: 9 DTVAVLSGYADVIVLRHPEPGAVKE--------------------------------EMG 36
DT V+SGY D +V+RHPE G+V E E
Sbjct: 174 DTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFS 233
Query: 37 R----VNGLTITMVGDLKNGRTVHSLARLLTLYD-VKLNYVSPPNLGMPESIQEFVASKG 91
R V+G I +VGDLK GRTVHSL +LL LY +K VSPP L MP I E ++ G
Sbjct: 234 RLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNG 293
Query: 92 KQQEV 96
E
Sbjct: 294 HVIEQ 298
>gnl|CDD|215776 pfam00185, OTCace, Aspartate/ornithine carbamoyltransferase,
Asp/Orn binding domain.
Length = 156
Score = 51.8 bits (125), Expect = 9e-10
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77
+GL + +VGD K+ R HSL L + +++ V+P L
Sbjct: 1 DGLKVAIVGDGKHNRVAHSLILALAKFGMEVVLVAPKGL 39
>gnl|CDD|237369 PRK13376, pyrB, bifunctional aspartate carbamoyltransferase
catalytic subunit/aspartate carbamoyltransferase
regulatory subunit; Provisional.
Length = 525
Score = 42.8 bits (101), Expect = 4e-06
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 43 ITMVGDLKNGRTVHSLARLLTLY-DVKLNYVSPPNLGMPESIQEFVASKG 91
I +VGDL +GRTVHS L ++ +VK++ ++P L MPE E + G
Sbjct: 177 IALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNG 226
>gnl|CDD|217204 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain.
Length = 140
Score = 41.4 bits (98), Expect = 7e-06
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 9 DTVAVLSGYADVIVLRHPEPGAVKEEMGR------VNGLT 42
DT VLS Y D IV+RHP GA+ EE+ + +N
Sbjct: 84 DTARVLSRYVDAIVIRHPSHGAL-EELAKYSSVPVINAGD 122
>gnl|CDD|177976 PLN02342, PLN02342, ornithine carbamoyltransferase.
Length = 348
Score = 37.1 bits (86), Expect = 5e-04
Identities = 23/98 (23%), Positives = 31/98 (31%), Gaps = 33/98 (33%)
Query: 9 DTVAVLSGYADVIVLR--------------------------HP-----EPGAVKEEMGR 37
D VLS Y D+I+ R HP + + E +GR
Sbjct: 132 DIARVLSRYNDIIMARVFAHQDVLDLAEYSSVPVINGLTDYNHPCQIMADALTIIEHIGR 191
Query: 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75
+ G + VGD N VHS L + P
Sbjct: 192 LEGTKVVYVGDGNN--IVHSWLLLAAVLPFHFVCACPK 227
>gnl|CDD|223156 COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport
and metabolism].
Length = 310
Score = 35.3 bits (82), Expect = 0.002
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 33/116 (28%)
Query: 9 DTVAVLSGYADVIVLRHPEPGAV-------------------------------KEEMGR 37
DT VLS D I++R + KE G
Sbjct: 91 DTARVLSRMVDAIMIRGFSHETLEELAKYSGVPVINGLTDEFHPCQALADLMTIKEHFGS 150
Query: 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
+ GL + VGD N +SL + + +P + E K+
Sbjct: 151 LKGLKLAYVGDGNN--VANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKE 204
>gnl|CDD|234835 PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.
Length = 304
Score = 30.4 bits (70), Expect = 0.091
Identities = 28/112 (25%), Positives = 37/112 (33%), Gaps = 35/112 (31%)
Query: 9 DTVAVLSGYADVIVLR--------------------------HP-----EPGAVKEEMGR 37
DT VLS Y D I++R HP + + E G
Sbjct: 90 DTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYEHRGS 149
Query: 38 VNGLTITMVGDLKNGRTV-HSLARLLTLYDVKLNYVSPPNLGMPESIQEFVA 88
+ GL + VGD G V +SL L L +P I E +A
Sbjct: 150 LKGLKVAWVGD---GNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIA 198
>gnl|CDD|217184 pfam02684, LpxB, Lipid-A-disaccharide synthetase. This is a family
of lipid-A-disaccharide synthetases, EC:2.4.2.128. These
enzymes catalyze the reaction:
UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine +
2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl
1-phosphate <=> UDP +
2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6
-beta-D-2,
3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl
1-phosphate. These enzymes catalyze the fist
disaccharide step in the synthesis of
lipid-A-disaccharide.
Length = 373
Score = 28.9 bits (65), Expect = 0.34
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 9/33 (27%)
Query: 58 LARLLTLYDVKLNYVSPPNL-----GMPESIQE 85
LA+ L VK++Y+S PN+ +PE IQ
Sbjct: 295 LAKRL----VKIDYISLPNIILNREIVPEFIQG 323
>gnl|CDD|223834 COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope
biogenesis, outer membrane].
Length = 381
Score = 28.4 bits (64), Expect = 0.53
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 55 VHSLARLLTLYDVKLNYVSPPNL-----GMPESIQEFVASKGKQQEV 96
V + + VKL YVS PN+ +PE IQE + + +
Sbjct: 292 VKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARAL 338
>gnl|CDD|129319 TIGR00215, lpxB, lipid-A-disaccharide synthase. Lipid-A precursor
biosynthesis producing lipid A disaccharide in a
condensation reaction. transcribed as part of an operon
including lpxA [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 385
Score = 28.3 bits (63), Expect = 0.63
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 9/33 (27%)
Query: 58 LARLLTLYDVKLNYVSPPNL-----GMPESIQE 85
+AR L VK +Y+S PN+ +PE +QE
Sbjct: 302 IARRL----VKTDYISLPNILANRLLVPELLQE 330
>gnl|CDD|233517 TIGR01662, HAD-SF-IIIA, HAD-superfamily hydrolase, subfamily IIIA.
This subfamily falls within the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
The Class III subfamilies are characterized by the lack
of any domains located between either between the first
and second conserved catalytic motifs (as in the Class I
subfamilies, TIGR01493, TIGR01509, TIGR01488 and
TIGR01494) or between the second and third conserved
catalytic motifs (as in the Class II subfamilies,
TIGR01460 and TIGR01484) of the superfamily domain. The
IIIA subfamily contains five major clades:
histidinol-phosphatase (TIGR01261) and
histidinol-phosphatase-related protein (TIGR00213) which
together form a subfamily (TIGR01656), DNA
3'-phosphatase (TIGR01663, TIGR01664), YqeG (TIGR01668)
and YrbI (TIGR01670). In the case of histidinol
phosphatase and PNK-3'-phosphatase, this model
represents a domain of a bifunctional system. In the
histidinol phosphatase HisB, a C-terminal domain is an
imidazoleglycerol-phosphate dehydratase which catalyzes
a related step in histidine biosynthesis. In
PNK-3'-phosphatase, N- and C-terminal domains constitute
the polynucleotide kinase and DNA-binding components of
the enzyme [Unknown function, Enzymes of unknown
specificity].
Length = 132
Score = 27.4 bits (61), Expect = 0.86
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 24 RHPEPGAVKEEMGRVNGLTIT---MVGD 48
R P+PG E + R N + VGD
Sbjct: 84 RKPKPGMFLEALKRFNEIDPEESVYVGD 111
>gnl|CDD|234580 PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.
Length = 380
Score = 27.8 bits (63), Expect = 0.89
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 9/35 (25%)
Query: 58 LARLLTLYDVKLNYVSPPNL--G---MPESIQEFV 87
+A+ L VK+ YVS PNL G +PE +QE
Sbjct: 296 IAKRL----VKVPYVSLPNLLAGRELVPELLQEEA 326
>gnl|CDD|114175 pfam05435, Phi-29_GP3, Phi-29 DNA terminal protein GP3. This
family consists of DNA terminal protein GP3 sequences
from Phi-29 like bacteriophages. DNA terminal protein
GP3 is linked to the 5' ends of both strands of the
genome through a phosphodiester bond between the
beta-hydroxyl group of a serine residue and the
5'-phosphate of the terminal deoxyadenylate. This
protein is essential for DNA replication and is
involved in the priming of DNA elongation.
Length = 266
Score = 27.6 bits (61), Expect = 0.99
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 58 LARLLTLYDVKL-NYVSPPNLGMPESIQEFVASKGKQQEVYER 99
+ R Y L +SPP+L ++ ++F K + + R
Sbjct: 28 ITRTKKKYGQDLSGEISPPSLESFKTREQFNKWKKRAESFTNR 70
>gnl|CDD|133906 PHA00490, PHA00490, terminal protein.
Length = 266
Score = 27.6 bits (61), Expect = 1.1
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 58 LARLLTLYDVKL-NYVSPPNLGMPESIQEFVASKGKQQEVYER 99
+ R Y L +SPP+L ++ ++F A K + + R
Sbjct: 28 ITRTKKKYGQDLTGEISPPSLDSFKTREQFNAWKKRAESFTNR 70
>gnl|CDD|215439 PLN02819, PLN02819, lysine-ketoglutarate reductase/saccharopine
dehydrogenase.
Length = 1042
Score = 27.1 bits (60), Expect = 1.8
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 21 IVLRHPEPGAVKEEMGRVNGLTITMV--GDLKNGRTVHSLAR 60
+VL H E + R+ + T++ G++KNGRT ++A+
Sbjct: 950 MVLLHHEVEVEFPDSKRIEKHSATLLEFGEIKNGRTTTAMAK 991
>gnl|CDD|139876 PRK13814, pyrB, aspartate carbamoyltransferase catalytic subunit;
Provisional.
Length = 310
Score = 26.2 bits (57), Expect = 3.3
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 31 VKEEMGRVNGLTITMVGDLKNGRTVHSLAR-LLTLYDVKLNYVSPPNLGMPESI 83
+K+ N L +T++GD+++ R +SL L+T+ ++ V P +L +P+ +
Sbjct: 148 IKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSL-LPDKV 200
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase
(NADP+).
Length = 299
Score = 26.0 bits (57), Expect = 3.5
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 27 EPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQE 85
E + E+ G+V GL + +VG K+ +T ++ R +V + ++ +PE+I E
Sbjct: 28 EVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKR-KACAEVGIKSF---DVDLPENISE 82
>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 364
Score = 26.1 bits (57), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 27 EPGAVKEEMGRVNGLTITMVGDLKNGRT 54
E +KE +G V GL + +VGD K+ T
Sbjct: 92 EVSRMKESIGVVPGLAVILVGDRKDSAT 119
>gnl|CDD|179366 PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.
Length = 331
Score = 25.6 bits (57), Expect = 4.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 VKEEMGRVNGLTITMVGDLKN 51
+KE G + GL + VGD +N
Sbjct: 146 MKEHFGPLKGLKLAYVGDGRN 166
>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 345
Score = 25.7 bits (56), Expect = 4.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 27 EPGAVKEEMGRVNGLTITMVGDLKNGRT 54
E +K+ +G+V GL + +VG ++ +T
Sbjct: 75 EVRKMKKAVGKVPGLAVVLVGQQRDSQT 102
>gnl|CDD|129743 TIGR00658, orni_carb_tr, ornithine carbamoyltransferase. This
family of ornithine carbamoyltransferases (OTCase) is in
a superfamily with the related enzyme aspartate
carbamoyltransferase. Most known examples are anabolic,
playing a role in arginine biosynthesis, but some are
catabolic. Most OTCases are homotrimers, but the
homotrimers are organized into dodecamers built from
four trimers in at least two species; the catabolic
OTCase of Pseudomonas aeruginosa is allosterically
regulated, while OTCase of the extreme thermophile
Pyrococcus furiosus shows both allostery and thermophily
[Amino acid biosynthesis, Glutamate family].
Length = 304
Score = 25.4 bits (56), Expect = 5.0
Identities = 25/118 (21%), Positives = 36/118 (30%), Gaps = 37/118 (31%)
Query: 9 DTVAVLSGYADVIVLR--------------------------HP-----EPGAVKEEMGR 37
DT VLS Y D I+ R HP + + E G+
Sbjct: 86 DTARVLSRYVDGIMARVYKHEDVEELAKYASVPVINGLTDLFHPCQALADLLTIIEHFGK 145
Query: 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESI----QEFVASKG 91
+ G+ + VGD N +SL + + +P I QE G
Sbjct: 146 LKGVKVVYVGDGNN--VCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENG 201
>gnl|CDD|218880 pfam06067, DUF932, Domain of unknown function (DUF932). Family
of prokaryotic proteins with unknown function. Contains
a number of highly conserved polar residues that could
suggest an enzymatic activity.
Length = 237
Score = 25.7 bits (57), Expect = 5.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 40 GLTITMVGDLKNGRTVHSLARL 61
G + G L+ GR V +LARL
Sbjct: 29 GPFMETAGRLRGGRRVWALARL 50
>gnl|CDD|225709 COG3168, PilP, Tfp pilus assembly protein PilP [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 170
Score = 25.2 bits (55), Expect = 5.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 26 PEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSL 58
P+P KE + + T +VG LK+G+ V +L
Sbjct: 81 PDPKRRKEPLEKFPLETFRLVGTLKSGQGVSAL 113
>gnl|CDD|226792 COG4342, COG4342, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 291
Score = 25.2 bits (55), Expect = 6.6
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 54 TVHSLARLLTLYDVKLNYVSP------PNLGMPESIQEFVASKGKQQEVYER 99
+ H + R VK Y+ LG+PE + +F+ + KQ V R
Sbjct: 212 SYHRVQRFENRRGVKAKYIRKWVYNKMLELGVPEDVVDFIQGR-KQSRVGTR 262
>gnl|CDD|225500 COG2949, SanA, Uncharacterized membrane protein [Function unknown].
Length = 235
Score = 25.0 bits (55), Expect = 7.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 57 SLARLLTLYDVKLNYVSPPNLGMPESIQEF 86
LAR+ + D+ + P LG P I F
Sbjct: 197 FLARVKAVLDLYILKREPKFLGPPVPIPPF 226
>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional.
Length = 385
Score = 25.0 bits (55), Expect = 7.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 46 VGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQE 85
VG + GR ++ R L +DVKL+Y L PE +++
Sbjct: 195 VGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRL--PEEVEQ 232
>gnl|CDD|235497 PRK05528, PRK05528, methionine sulfoxide reductase A;
Provisional.
Length = 156
Score = 24.6 bits (54), Expect = 8.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 28 PGAVKEEMGRVNGLTITMVGD 48
PG + E GR NG T T+ G
Sbjct: 22 PGVIHTEAGRANGRTSTLDGP 42
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 25.0 bits (55), Expect = 8.9
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 2 MMYSNLIDTVAVLSGYADVIVLRHPEP 28
+++ I VA+ + YA +L HP+P
Sbjct: 234 AVHAPRICEVAIAAAYA---ILDHPDP 257
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.376
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,124,823
Number of extensions: 433914
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 44
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)