RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4411
(99 letters)
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase
catalytic subunit {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 157
Score = 53.3 bits (127), Expect = 6e-11
Identities = 31/61 (50%), Positives = 39/61 (63%)
Query: 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQEV 96
R++GL I ++GDLK GRTVHSLA LT YDV+L +SP L MP I E + KG +
Sbjct: 1 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVE 60
Query: 97 Y 97
Sbjct: 61 T 61
>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase
catalytic subunit {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 153
Score = 52.5 bits (125), Expect = 1e-10
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPE 81
++GL ++GDLK RTV+SL R+LT + KL Y+ P L
Sbjct: 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRAR 44
>gi|154685965|ref|YP_001421126.1|(145-295:304) aspartate
carbamoyltransferase catalytic subunit [Bacillus
amyloliquefaciens FZB42]
gi|166234047|sp|A7Z4G9.1|PYRB_BACA2 RecName:
Full=Aspartate carbamoyltransferase; AltName:
Full=Aspartate transcarbamylase; Short=ATCase
gi|154351816|gb|ABS73895.1| PyrB [Bacillus
amyloliquefaciens FZB42] E=8e-68 s/c=1.71 id=80%
cov=101%
Length = 151
Score = 50.9 bits (121), Expect = 4e-10
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPP 75
GLT+++ GD+K+ R S A +LT ++ + PP
Sbjct: 3 GLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPP 38
>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase
catalytic subunit {Escherichia coli [TaxId: 562]}
Length = 160
Score = 48.6 bits (115), Expect = 4e-09
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 37 RVNGLTITMVGDLKNGRTVHSLARLLTLYDVKLN-YVSPPNLGMPESIQEFVASKGKQQE 95
R++ L + MVGDLK GRTVHSL + L +D +++P L MP+ I + + KG
Sbjct: 1 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWS 60
Query: 96 VYE 98
++
Sbjct: 61 LHS 63
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase
{Escherichia coli [TaxId: 562]}
Length = 183
Score = 43.3 bits (101), Expect = 5e-07
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQQ 94
N +T+ GD +N +S+ L + L V+P ++ + +Q
Sbjct: 4 NEMTLVYAGDARN-NMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQN 58
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 185
Score = 41.3 bits (96), Expect = 2e-06
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNL 77
+ ++ +GD +N +SL + + + +P L
Sbjct: 4 HDISYAYLGDARN-NMGNSLLLIGAKLGMDVRIAAPKAL 41
>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 38.6 bits (89), Expect = 3e-05
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 39 NGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF 86
GLT++ +GD N +HS+ + + L +P S+ +
Sbjct: 3 KGLTLSWIGDGNN--ILHSIMMSAAKFGMHLQAATPKGYEPDASVTKL 48
>d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 150
Score = 37.3 bits (86), Expect = 6e-05
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 1 MMMYSNLIDTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVHSLAR 60
+ + DT VLS Y D I+ R + V++ I + D + +LA
Sbjct: 84 LRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYATVPVINGLSDFSH--PCQALAD 141
Query: 61 LLTLYDVK 68
+T+++ K
Sbjct: 142 YMTIWEKK 149
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 163
Score = 36.6 bits (84), Expect = 1e-04
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 38 VNGLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEFVASKGKQ 93
+ G+ + VGD N HSL T + +P E + ++ +
Sbjct: 2 IKGVKVVYVGDGNN--VAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAE 55
>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 36.4 bits (83), Expect = 1e-04
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 40 GLTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQEF 86
G+ + +GD +N SL + P L + +
Sbjct: 3 GVKVVFMGDTRN-NVATSLMIACAKMGMNFVACGPEELKPRSDVFKR 48
>d1js1x1 c.78.1.1 (X:1-163) Transcarbamylase-like protein
{Bacteroides fragilis [TaxId: 817]}
Length = 163
Score = 30.8 bits (69), Expect = 0.013
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 8 IDTVAVLSGYADVIVLRHPEPGAVKE---EMGRVNGLTITMVGDLKNGRTVHS-----LA 59
++ + V+ Y D+I +R +E +N + + A
Sbjct: 94 LEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFA 153
Query: 60 RLLTLYDVK 68
L+T+ + K
Sbjct: 154 DLITIEEYK 162
>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein
{Bacteroides fragilis [TaxId: 817]}
Length = 161
Score = 26.6 bits (58), Expect = 0.39
Identities = 5/45 (11%), Positives = 10/45 (22%)
Query: 41 LTITMVGDLKNGRTVHSLARLLTLYDVKLNYVSPPNLGMPESIQE 85
+T +S A + D + P +
Sbjct: 8 MTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVG 52
>d1otha1 c.78.1.1 (A:34-184) Ornithine transcarbamoylase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 23.9 bits (51), Expect = 3.3
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 9 DTVAVLSGYADVIVLRHPEPGAVKEEMGRVNGLTITMVGDLKNGRTVH---SLARLLTLY 65
DT VLS AD ++ R + + + I + DL H LA LTL
Sbjct: 93 DTARVLSSMADAVLARVYKQSDLDTLAKEASIPIINGLSDLY-----HPIQILADYLTLQ 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.376
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 363,353
Number of extensions: 14914
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 16
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)