RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4412
(39 letters)
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 42.2 bits (100), Expect = 3e-07
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 7 YACLWCDYHTLN-----SGHMRDHIRRHTGEKPFVCPF 39
+ C W + H+RRHTGEKP C F
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTF 72
Score = 33.7 bits (78), Expect = 4e-04
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
+++ H+R HTGEKP++C
Sbjct: 82 LENLKTHLRSHTGEKPYMCEH 102
Score = 29.1 bits (66), Expect = 0.016
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 18 NSGHMRDHIRR-HTGEKPFVC 37
N+ H R H+ EKP+VC
Sbjct: 111 NASDRAKHQNRTHSNEKPYVC 131
Score = 28.3 bits (64), Expect = 0.040
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 3/34 (8%)
Query: 7 YACLWCDYHTLNSGHMRDHIRR---HTGEKPFVC 37
C + + HI H K FVC
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVC 37
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 38.6 bits (91), Expect = 1e-06
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
C C Y + +R H R H ++PF C
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKC 40
Score = 33.2 bits (77), Expect = 2e-04
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
+ C +C + T ++ H+++ G+
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 25.5 bits (57), Expect = 0.25
Identities = 2/11 (18%), Positives = 3/11 (27%)
Query: 27 RRHTGEKPFVC 37
+ P C
Sbjct: 2 SSGSSGHPEKC 12
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 37.0 bits (86), Expect = 8e-06
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
S H++ H R HTGEKPF C +
Sbjct: 32 SSHLKAHTRTHTGEKPFSCSW 52
Score = 25.4 bits (56), Expect = 0.27
Identities = 2/21 (9%), Positives = 5/21 (23%)
Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
S + + +C
Sbjct: 2 SSGSSGPQIDSSRIRSHICSH 22
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 37.7 bits (88), Expect = 1e-05
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
+ +HIR HTGEKPF CPF
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPF 95
Score = 33.8 bits (78), Expect = 3e-04
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
S +++ H R HTGEKPF C F
Sbjct: 105 SENLKIHKRTHTGEKPFKCEF 125
Score = 31.9 bits (73), Expect = 0.002
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 18 NSGHMRDHIRRHTGEKPFVC 37
NS + H+ HT +K
Sbjct: 134 NSSDRKKHMHVHTSDKSGPS 153
Score = 31.1 bits (71), Expect = 0.003
Identities = 4/33 (12%), Positives = 6/33 (18%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF 39
CD + H+ P
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH 58
Score = 23.0 bits (50), Expect = 2.9
Identities = 0/19 (0%), Positives = 2/19 (10%), Gaps = 1/19 (5%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ +
Sbjct: 11 KQELS-CKWIDEAQLSRPK 28
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 36.7 bits (86), Expect = 1e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 5 YLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C S H++ H+R HTGEKP+ C
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC 38
Score = 32.5 bits (75), Expect = 6e-04
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP 38
Y C W C + S + H R+HTG +PF C
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 36.5 bits (85), Expect = 2e-05
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
S H++ H+R HTGEKP+ C +
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTW 50
Score = 36.1 bits (84), Expect = 3e-05
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP 38
Y C W CD+ S + H R+HTG KPF C
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG 79
Score = 24.5 bits (54), Expect = 0.78
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHT 30
+ C C+ S H+ H++RH
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRHQ 99
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 35.7 bits (83), Expect = 2e-05
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP 38
YAC CD S + HIR HTG+KPF C
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 53
Score = 23.8 bits (52), Expect = 1.2
Identities = 3/20 (15%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 19 SGHMRDHIRRHTGEKPFVCP 38
++ +++ +P+ CP
Sbjct: 6 MNNLLNYVV--PKMRPYACP 23
Score = 23.4 bits (51), Expect = 1.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHT 30
+ C C + S H+ HIR HT
Sbjct: 50 FQCRICMRNFSRSDHLTTHIRTHT 73
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 35.5 bits (83), Expect = 4e-05
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C + S H+ HIR HTGEKPF C
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 34
Score = 26.7 bits (60), Expect = 0.11
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+AC C S + H P +
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILE 61
Score = 21.7 bits (47), Expect = 8.5
Identities = 2/9 (22%), Positives = 6/9 (66%)
Query: 25 HIRRHTGEK 33
+++ GE+
Sbjct: 80 RLKKLVGER 88
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 35.2 bits (82), Expect = 5e-05
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 18 NSGHMRDHIRRHTGEKPFVCPF 39
H+++H++ H+ + ++C F
Sbjct: 52 FKKHLKEHMKLHSDTRDYICEF 73
Score = 31.4 bits (72), Expect = 0.001
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 18 NSGHMRDHIR-RHTGEKPFVCPF 39
N ++ H + +H +K F CP
Sbjct: 21 NRQYLNHHKKYQHIHQKSFSCPE 43
Score = 26.7 bits (60), Expect = 0.092
Identities = 3/11 (27%), Positives = 4/11 (36%)
Query: 29 HTGEKPFVCPF 39
+G C F
Sbjct: 2 SSGSSGMPCDF 12
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 35.2 bits (82), Expect = 7e-05
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
++R H+R HTG++P+VCPF
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPF 97
Score = 34.4 bits (80), Expect = 2e-04
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
S ++ H HTGEKPF C F
Sbjct: 47 SSKLKRHQLVHTGEKPFQCTF 67
Score = 30.2 bits (69), Expect = 0.006
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 19 SGHMRDHIRRHTGEKPF 35
S +++ HI H K
Sbjct: 107 STNLKSHILTHAKAKNN 123
Score = 27.9 bits (63), Expect = 0.049
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ MR H+ H G + VC
Sbjct: 20 NSAMRKHLHTH-GPRVHVC 37
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 35.2 bits (82), Expect = 9e-05
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C S H++ H R HTGEKPF C
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 34.4 bits (80), Expect = 2e-04
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H++ H R+HTGEKP+ C
Sbjct: 21 LSHLQMHSRKHTGEKPYQC 39
Score = 34.0 bits (79), Expect = 2e-04
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S ++ H RRHTG KPF C
Sbjct: 51 SDQLKRHQRRHTGVKPFQC 69
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 34.0 bits (79), Expect = 2e-04
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S H+ HIR HTGEKPF C
Sbjct: 47 SDHLTTHIRTHTGEKPFAC 65
Score = 34.0 bits (79), Expect = 2e-04
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
SG + HIR HTG+KPF C
Sbjct: 19 SGSLTRHIRIHTGQKPFQC 37
Score = 26.3 bits (59), Expect = 0.13
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEK 33
+AC C S + H + H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 33.4 bits (76), Expect = 2e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
AC C + H+ H H+GEKP+
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 33.6 bits (78), Expect = 2e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C Y + NS + H+R HTG+
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 32.4 bits (75), Expect = 8e-04
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C CDY +S + H+R H+ E+PF C
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Score = 30.9 bits (71), Expect = 0.003
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C ++ H+R HTG KP+ C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKC 39
Score = 23.2 bits (51), Expect = 2.3
Identities = 2/9 (22%), Positives = 2/9 (22%)
Query: 29 HTGEKPFVC 37
P C
Sbjct: 3 SGSSGPHKC 11
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 32.3 bits (74), Expect = 3e-04
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 25 HIRRHTGEKPFVCPF 39
TGEKPF C +
Sbjct: 3 SGSSGTGEKPFACTW 17
Score = 30.7 bits (70), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHTGEKPFVC 37
+AC W C + S + H R H+G KP
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 32.4 bits (73), Expect = 4e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C ++ HIR HT +P+ C
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHC 32
Score = 29.7 bits (66), Expect = 0.004
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEK 33
Y C +C++ G++ H++ K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 32.9 bits (76), Expect = 4e-04
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 20 GHMRDHIRRHTGEKPFVCP 38
G R H+GEKP+ C
Sbjct: 1 GSSGSSGRTHSGEKPYECY 19
Score = 32.1 bits (74), Expect = 6e-04
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGE--KPFVCP 38
Y C C SG M+ HI + E F CP
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCP 49
Score = 29.8 bits (68), Expect = 0.005
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 7 YACLWCDYHTLNSGHMRDHIRR-HTGEKPF 35
+ C CD + H+R+ H+ P
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (74), Expect = 4e-04
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C+ + H R HT EKP
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 25.2 bits (56), Expect = 0.22
Identities = 3/13 (23%), Positives = 4/13 (30%)
Query: 25 HIRRHTGEKPFVC 37
G P+ C
Sbjct: 3 SGSSGAGVNPYKC 15
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 31.8 bits (73), Expect = 5e-04
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 19 SGHMRDHIRR-HTGEKPFVC 37
H+ HI++ HT E+P C
Sbjct: 25 PDHLNGHIKQVHTSERPHKC 44
Score = 23.7 bits (52), Expect = 0.96
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 25 HIRRHTGEKPFVCP 38
+ KP++C
Sbjct: 3 SGSSGSVGKPYICQ 16
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 32.1 bits (74), Expect = 6e-04
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 19 SGHMRDHIRRHTGEKPFVCP 38
H++ H R HT EKP+ C
Sbjct: 15 QEHLKRHYRSHTNEKPYPCG 34
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 32.2 bits (74), Expect = 6e-04
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
++ H HT + P+ CP
Sbjct: 16 HNQLKVHQFSHTQQLPYECPH 36
Score = 27.6 bits (62), Expect = 0.050
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C CD ++ H + H G
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 32.1 bits (74), Expect = 7e-04
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 20 GHMRDHIRRHTGEKPFVC 37
G R HTGEKP+ C
Sbjct: 1 GSSGSSGRTHTGEKPYAC 18
Score = 31.0 bits (71), Expect = 0.002
Identities = 3/19 (15%), Positives = 3/19 (15%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
M H G
Sbjct: 60 RNTMARHADNCAGPDGVEG 78
Score = 27.9 bits (63), Expect = 0.030
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGE----KPFVC 37
YAC CD + H +R+ FVC
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC 50
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 32.6 bits (74), Expect = 7e-04
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 2 DPTYLYACLWCDYHTLNSG-----HMRDHIRRHTGEKPFVC 37
+ C W + + +HIR HTGEK
Sbjct: 53 PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 31.0 bits (71), Expect = 9e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPF 35
Y C C + H+R H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 25.6 bits (57), Expect = 0.15
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
GEKP+ C
Sbjct: 2 SSGSSGGEKPYKC 14
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 30.9 bits (71), Expect = 9e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPF 35
Y C C + ++ H+R HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 25.5 bits (57), Expect = 0.13
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
GEKP+ C
Sbjct: 2 SSGSSGGEKPYPC 14
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.0 bits (69), Expect = 0.001
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEK 33
Y C C Y + ++ H+R+HTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 32.1 bits (74), Expect = 0.001
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
C C L+ +++ H R+HTGEKPF CP
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECP 39
Score = 32.1 bits (74), Expect = 0.001
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C +R H+ HTGE P+ C
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKC 97
Score = 28.2 bits (64), Expect = 0.034
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 7 YACLWCDYHTLNSGHMRDHIRR---HTGEKPFVC 37
+ C C ++ +H R + E+ F C
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Score = 24.8 bits (55), Expect = 0.76
Identities = 3/10 (30%), Positives = 4/10 (40%)
Query: 29 HTGEKPFVCP 38
+G CP
Sbjct: 2 SSGSSGVECP 11
Score = 21.7 bits (47), Expect = 8.2
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 7 YACLWCDYHTLNSGHMRDHIRR-HTGEK 33
Y C C + ++ H+ + H+G
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 31.0 bits (71), Expect = 0.001
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C CD + +R H H GEKP
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 25.2 bits (56), Expect = 0.22
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 25 HIRRHTGEKPFVC 37
GEK + C
Sbjct: 3 SGSSGMGEKTWKC 15
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 31.7 bits (73), Expect = 0.001
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 19 SGHMRDHIRRHTGEKPFVCP 38
H+ H H+GEKP+ CP
Sbjct: 20 VYHLNRHKLSHSGEKPYSCP 39
Score = 27.1 bits (61), Expect = 0.076
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 19 SGHMRDHIRRHTGE--KPFVC 37
M H+R H G KP++C
Sbjct: 48 KDRMSYHVRSHDGSVGKPYIC 68
Score = 25.1 bits (56), Expect = 0.45
Identities = 2/9 (22%), Positives = 3/9 (33%)
Query: 29 HTGEKPFVC 37
+G C
Sbjct: 2 SSGSSGVAC 10
Score = 24.0 bits (53), Expect = 1.0
Identities = 5/16 (31%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 19 SGHMRDHIRR-HTGEK 33
H+ HI++ H+G
Sbjct: 78 PDHLNGHIKQVHSGPS 93
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.001
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C +R H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 26.0 bits (58), Expect = 0.091
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 30.8 bits (70), Expect = 0.002
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 3/34 (8%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHT---GEKPFVC 37
C C + + H R+H F C
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPC 41
Score = 23.9 bits (52), Expect = 0.96
Identities = 3/32 (9%), Positives = 7/32 (21%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
+ C +C + H +
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
Score = 23.5 bits (51), Expect = 1.3
Identities = 2/9 (22%), Positives = 3/9 (33%)
Query: 29 HTGEKPFVC 37
+G C
Sbjct: 2 SSGSSGLQC 10
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.002
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H+ H + HTGEKP
Sbjct: 25 KAHLAQHQKTHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.078
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYEC 15
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 31.8 bits (73), Expect = 0.002
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ ++ H+ +HTGEKPF C
Sbjct: 27 NWKLQAHLCKHTGEKPFPC 45
Score = 31.4 bits (72), Expect = 0.003
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H+ H HTGEK F C
Sbjct: 57 LHHLTRHSLTHTGEKNFTC 75
Score = 30.6 bits (70), Expect = 0.006
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
++ H HT + P+ C
Sbjct: 119 HNQLKVHQFSHTQQLPYEC 137
Score = 28.7 bits (65), Expect = 0.026
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 19 SGHMRDHIRRHTGEK--PFVCPF 39
+M+ H R K +VC F
Sbjct: 87 KANMKKHFNRFHNIKICVYVCHF 109
Score = 28.3 bits (64), Expect = 0.040
Identities = 2/13 (15%), Positives = 4/13 (30%)
Query: 25 HIRRHTGEKPFVC 37
K ++C
Sbjct: 3 EKALPVVYKRYIC 15
Score = 22.9 bits (50), Expect = 3.2
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
++ H + H G
Sbjct: 149 PSRLKRHEKVHAGYPCKKD 167
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.003
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C + H+ H R HTGEKP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.057
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 24 DHIRRHTGEKPFVC 37
+GEKPF C
Sbjct: 2 SSGSSGSGEKPFQC 15
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 31.6 bits (73), Expect = 0.003
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C ++R H R HTGEKP+ C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Score = 31.6 bits (73), Expect = 0.003
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
YAC C S H+ +H R HTGEKP+ C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKC 52
Score = 31.3 bits (72), Expect = 0.003
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + + H R HTGEKP+ C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Score = 31.3 bits (72), Expect = 0.003
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
YAC C H+R H R HTGEKP+ C
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Score = 30.9 bits (71), Expect = 0.004
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C ++ H R HTGEKP+ C
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Score = 30.9 bits (71), Expect = 0.005
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 18 NSGHMRDHIRRHTGEKPFVC 37
S GEKP+ C
Sbjct: 5 GSSSSVAQAALEPGEKPYAC 24
Score = 26.3 bits (59), Expect = 0.21
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 19 SGHMRDHIRRHTGEKP 34
+ H R HTG+K
Sbjct: 174 RDALNVHQRTHTGKKT 189
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.003
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
GH+ H R HTGE+
Sbjct: 25 IGHLNQHKRVHTGERSSGP 43
Score = 24.8 bits (55), Expect = 0.27
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
+G+KP+ C
Sbjct: 3 SGSSGSGKKPYEC 15
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.003
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H+ +H++RH EK
Sbjct: 25 HSHLIEHLKRHFREKSSGP 43
Score = 25.2 bits (56), Expect = 0.22
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
+GE+P+ C
Sbjct: 3 SGSSGSGERPYGC 15
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.003
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C + + H R HTGEKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.049
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 24 DHIRRHTGEKPFVC 37
+GEKPF C
Sbjct: 2 SSGSSGSGEKPFKC 15
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.003
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + H + HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 27.1 bits (61), Expect = 0.041
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 30.2 bits (69), Expect = 0.003
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 2/34 (5%)
Query: 7 YACLWCDYHTLNSGHMRDHIR--RHTGEKPFVCP 38
Y C C + + H K + CP
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCP 44
Score = 25.2 bits (56), Expect = 0.33
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 27 RRHTGEKPFVCP 38
GE + C
Sbjct: 3 FTKEGEHTYRCK 14
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (67), Expect = 0.004
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C + H R H+GEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.042
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
+GEKPF C
Sbjct: 3 SGSSGSGEKPFKC 15
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.004
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C S H++ H R HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 0.12
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 25 HIRRHTGEKPFVC 37
GEK + C
Sbjct: 3 SGSSGMGEKCYKC 15
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.004
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H+ H+R H+ EK
Sbjct: 25 RSHLAGHLRLHSREKSSGP 43
Score = 25.2 bits (56), Expect = 0.21
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
+GE+PF C
Sbjct: 3 SGSSGSGERPFKC 15
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 29.4 bits (67), Expect = 0.004
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C G++ H R HTGEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 26.7 bits (60), Expect = 0.044
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TG+KPF C
Sbjct: 3 SGSSGTGQKPFEC 15
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 30.1 bits (69), Expect = 0.004
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C G++ H HTGEKP+ C
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRC 48
Score = 29.7 bits (68), Expect = 0.006
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H H +KP+ C
Sbjct: 2 GHHHHHHSHMTHSDKPYKC 20
Score = 27.8 bits (63), Expect = 0.035
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPF 35
Y C C +++ H R H+GEKP+
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.4 bits (67), Expect = 0.004
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
++ H R HTGE
Sbjct: 25 KSYLIIHTRTHTGESGPSS 43
Score = 27.1 bits (61), Expect = 0.030
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TG KP+VC
Sbjct: 3 SGSSGTGMKPYVC 15
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 29.4 bits (67), Expect = 0.005
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C+ C + H + HTGEKP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.038
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 24 DHIRRHTGEKPFVC 37
TGEKPF C
Sbjct: 2 SSGSSGTGEKPFKC 15
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 30.5 bits (70), Expect = 0.005
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H+RDH H+ EKPF C
Sbjct: 58 QDHLRDHRYIHSKEKPFKC 76
Score = 29.7 bits (68), Expect = 0.008
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S ++ H R HT E+P+ C
Sbjct: 30 SYNLLIHERTHTDERPYTC 48
Score = 29.3 bits (67), Expect = 0.011
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S +K F+C
Sbjct: 2 SSGSSGGRLPSKTKKEFIC 20
Score = 28.9 bits (66), Expect = 0.019
Identities = 3/19 (15%), Positives = 4/19 (21%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S + H H
Sbjct: 86 SRTLAVHKTLHMQTSSPTA 104
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.005
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + H+ H R HTGEKP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.046
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP++C
Sbjct: 3 SGSSGTGEKPYIC 15
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 29.1 bits (66), Expect = 0.005
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + + H R H+GEKP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 26.8 bits (60), Expect = 0.058
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYNC 15
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.0 bits (66), Expect = 0.006
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C+ + ++ H + H EKP
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 24.0 bits (53), Expect = 0.48
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 29 HTGEKPFVC 37
+GEKPF C
Sbjct: 5 SSGEKPFGC 13
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 30.1 bits (69), Expect = 0.006
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H+ H++ HTG KP+ C
Sbjct: 50 KHHLVGHMKIHTGIKPYEC 68
Score = 29.3 bits (67), Expect = 0.012
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H+ H G +P+ C
Sbjct: 22 KSQRDRHMSMHLGLRPYGC 40
Score = 26.3 bits (59), Expect = 0.18
Identities = 2/13 (15%), Positives = 4/13 (30%)
Query: 25 HIRRHTGEKPFVC 37
H + K +
Sbjct: 82 HRHVTSCTKSYEA 94
Score = 25.1 bits (56), Expect = 0.49
Identities = 3/11 (27%), Positives = 6/11 (54%)
Query: 27 RRHTGEKPFVC 37
+G+K + C
Sbjct: 3 SGSSGDKLYPC 13
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 29.1 bits (66), Expect = 0.006
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPF 35
Y C C G + HIR HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 26.8 bits (60), Expect = 0.054
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
GEKP+ C
Sbjct: 2 SSGSSGGEKPYRC 14
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.006
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H R HTGEKP
Sbjct: 25 KSILSAHQRTHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.051
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
+GEKP+ C
Sbjct: 3 SGSSGSGEKPYGC 15
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.1 bits (66), Expect = 0.007
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + ++ H+R H+GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.045
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
GEKP+ C
Sbjct: 3 SGSSGAGEKPYGC 15
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.007
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C+ C + H R HTGEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 26.3 bits (59), Expect = 0.071
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 24 DHIRRHTGEKPFVC 37
+GEKP+ C
Sbjct: 2 SSGSSGSGEKPYKC 15
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 29.3 bits (67), Expect = 0.007
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
M+ H HTGEKP C
Sbjct: 42 KSDMKKHTFIHTGEKPHKC 60
Score = 28.9 bits (66), Expect = 0.013
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S + H+ H+ +P+ C
Sbjct: 14 SSTLSTHLLIHSDTRPYPC 32
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.008
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H+ H+R HTGEKP
Sbjct: 25 NIHLASHLRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.086
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
+GEKPF C
Sbjct: 3 SGSSGSGEKPFKC 15
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 28.6 bits (65), Expect = 0.008
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S + H R HTGEKP
Sbjct: 25 SSQLATHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.046
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKPF C
Sbjct: 3 SGSSGTGEKPFEC 15
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.008
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C ++ H R HTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.021
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKPF C
Sbjct: 3 SGSSGTGEKPFEC 15
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.008
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + + H HTGEKP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.083
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 24 DHIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.008
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + + H R HTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 26.0 bits (58), Expect = 0.090
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYEC 15
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.009
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H+ +H R HTG +P
Sbjct: 25 HTHLNEHRRIHTGYRPSGP 43
Score = 26.3 bits (59), Expect = 0.062
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
+GEKP+ C
Sbjct: 3 SGSSGSGEKPYKC 15
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 29.3 bits (67), Expect = 0.009
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
SG + + + C
Sbjct: 3 SGSSGRSEWQQRERRRYKC 21
Score = 28.2 bits (64), Expect = 0.020
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S + H R HTGEKP+ C
Sbjct: 31 SSDLSKHRRTHTGEKPYKC 49
Score = 26.3 bits (59), Expect = 0.13
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 19 SGHMRDHIRRHTGEKPF 35
H+ H R HTG P
Sbjct: 59 RSHLIGHHRVHTGSGPS 75
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.010
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H+ +H R HTG KP
Sbjct: 25 NSHLANHQRIHTGVKPSGP 43
Score = 25.9 bits (58), Expect = 0.10
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.010
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C + S H+ H R HTGEKP
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.095
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
TGE+P C
Sbjct: 3 SGSSGTGERPHKC 15
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 28.5 bits (64), Expect = 0.011
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 25 HIRRHTGEKPFVCP 38
R TG KPF CP
Sbjct: 2 STRGSTGIKPFQCP 15
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.011
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ + H R H+GEKP
Sbjct: 25 APCLLKHERLHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.036
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
TGEK + C
Sbjct: 3 SGSSGTGEKLYNC 15
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.012
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + ++ H + HTGEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.040
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 24 DHIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 2 SSGSSGTGEKPYRC 15
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.012
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S H+ H+R HT E
Sbjct: 25 SAHLNQHLRVHTQETLSGP 43
Score = 26.3 bits (59), Expect = 0.064
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYSC 15
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.012
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + ++ H + HTGE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 26.3 bits (59), Expect = 0.083
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 28.2 bits (64), Expect = 0.012
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H+ H R HTGEKP
Sbjct: 25 TTHLIQHQRVHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.070
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYEC 15
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.013
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H H+GEKP
Sbjct: 25 RSSLAIHQATHSGEKPSGP 43
Score = 26.0 bits (58), Expect = 0.093
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.013
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H R H GEKP
Sbjct: 25 KYQLISHQRTHAGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.074
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
TGE P+ C
Sbjct: 3 SGSSGTGENPYEC 15
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.013
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + H R HTGEKP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.10
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.013
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H+ H R HTGEKP
Sbjct: 25 RVHLTQHQRVHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.078
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKPF C
Sbjct: 3 SGSSGTGEKPFKC 15
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.013
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S + H R HTGEKP
Sbjct: 25 SSSLTVHQRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.087
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 25 HIRRHTGEKPFVC 37
G+K F C
Sbjct: 3 SGSSGAGKKLFKC 15
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.014
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H+ H R HTG KP
Sbjct: 25 NSHLARHRRVHTGGKPSGP 43
Score = 25.6 bits (57), Expect = 0.17
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.014
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+++H R HTGEKP
Sbjct: 25 DSQLQEHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.078
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYNC 15
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 28.2 bits (64), Expect = 0.014
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
++ H R HTGE
Sbjct: 25 KSNLMVHQRTHTGESGPSS 43
Score = 27.1 bits (61), Expect = 0.038
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYEC 15
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.014
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C + ++ H + HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 27.5 bits (62), Expect = 0.024
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGE PF+C
Sbjct: 3 SGSSGTGENPFIC 15
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.016
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S H+ H H+GE+P
Sbjct: 25 SSHLVQHHSVHSGERPSGP 43
Score = 26.3 bits (59), Expect = 0.065
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.016
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ + H R HTGEKP
Sbjct: 25 TSKLARHQRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.093
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.016
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H+ H HTGEKP
Sbjct: 25 NSHLARHRGIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.11
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.017
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H+ +H R HTGEKP
Sbjct: 25 NSHLTNHWRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.12
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
+GEKP+ C
Sbjct: 3 SGSSGSGEKPYKC 15
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.017
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H+ H HTGEKP
Sbjct: 25 NSHLARHRGIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 0.15
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TG+KP+ C
Sbjct: 3 SGSSGTGKKPYKC 15
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 27.9 bits (63), Expect = 0.017
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + H R HTG KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 27.1 bits (61), Expect = 0.032
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
TG KP+ C
Sbjct: 3 SGSSGTGVKPYGC 15
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.017
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H HT EKP
Sbjct: 25 RSRLNRHSMVHTAEKPSGP 43
Score = 26.7 bits (60), Expect = 0.054
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKPF C
Sbjct: 3 SGSSGTGEKPFKC 15
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.018
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C ++ H R HTGEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.055
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYRC 15
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 27.6 bits (62), Expect = 0.018
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPF 35
Y C C G + H R + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 24.2 bits (53), Expect = 0.42
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
GE P++C
Sbjct: 2 SSGSSGGETPYLC 14
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.018
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ + H R HTGEKP
Sbjct: 25 TSKLARHQRVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 0.11
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
TG KP+ C
Sbjct: 3 SGSSGTGGKPYQC 15
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 27.9 bits (63), Expect = 0.019
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ + H + HTGEKP
Sbjct: 25 NSQLSQHQKIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.073
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
TGEK + C
Sbjct: 3 SGSSGTGEKRYKC 15
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.019
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S + H+R H P
Sbjct: 25 SCSLFKHLRSHERTDPSGP 43
Score = 27.2 bits (61), Expect = 0.036
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKPF C
Sbjct: 3 SGSSGTGEKPFQC 15
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.020
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + H + HTGEKP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.082
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYEC 15
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.020
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H R H+GEKP
Sbjct: 25 HASLTQHQRVHSGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.082
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYEC 15
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.021
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H R H+G+KP
Sbjct: 25 RQSLSVHQRIHSGKKPSGP 43
Score = 25.9 bits (58), Expect = 0.087
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYEC 15
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.021
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H+ H HTGEKP
Sbjct: 25 NSHLVRHRGIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.10
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.021
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H R H GEKP
Sbjct: 25 KSTLSMHQRIHRGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.10
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
TGE+ + C
Sbjct: 3 SGSSGTGERHYEC 15
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.023
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H + HTGEKP
Sbjct: 25 KSTLSMHQKIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.049
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 25 HIRRHTGEKPFVC 37
TG K F C
Sbjct: 3 SGSSGTGGKHFEC 15
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.4 bits (62), Expect = 0.023
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H+ H HTGEKP
Sbjct: 25 NSHLARHQLIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.077
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 27.5 bits (62), Expect = 0.023
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H R H GE
Sbjct: 23 KDQLISHQRTHAGESGPSS 41
Score = 24.0 bits (53), Expect = 0.60
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 27 RRHTGEKPFVC 37
+GE P+ C
Sbjct: 3 SGSSGENPYEC 13
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.024
Identities = 6/31 (19%), Positives = 8/31 (25%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
C C + H R H +K
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 26.4 bits (59), Expect = 0.073
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP C
Sbjct: 3 SGSSGTGEKPCKC 15
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.024
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C+ C ++ H R HTG++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 26.0 bits (58), Expect = 0.088
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.025
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP++C
Sbjct: 3 SGSSGTGEKPYIC 15
Score = 27.1 bits (61), Expect = 0.037
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
++ H + HT +KP
Sbjct: 25 RSNLIKHQKIHTKQKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.025
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H HTG+KP
Sbjct: 25 RSSLTTHQAIHTGKKPSGP 43
Score = 25.6 bits (57), Expect = 0.13
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYEC 15
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.026
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C C + ++ H + HTGEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.035
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 25 HIRRHTGEKPFVC 37
TGE+P++C
Sbjct: 3 SGSSGTGERPYIC 15
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.5 bits (62), Expect = 0.026
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H R HTGEKP
Sbjct: 25 KSSLICHRRSHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.065
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TG++P+ C
Sbjct: 3 SGSSGTGQRPYEC 15
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.029
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C + + H R HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 26.0 bits (58), Expect = 0.11
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP C
Sbjct: 3 SGSSGTGEKPHEC 15
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.029
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ ++ H R HTGEKP
Sbjct: 25 NSYLSRHQRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.089
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.031
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H R HTGEKP
Sbjct: 25 HIGLNQHRRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.053
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKPF C
Sbjct: 3 SGSSGTGEKPFDC 15
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.032
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
++ H HTGEKP
Sbjct: 25 HSNLTTHQVIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.080
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TGEKP+ C
Sbjct: 3 SGSSGTGEKPYKC 15
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.033
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S + H R HTGEKP
Sbjct: 25 SAELVRHQRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.033
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 25 HIRRHTGEKPFVC 37
+GEKP+VC
Sbjct: 3 SGSSGSGEKPYVC 15
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 27.4 bits (62), Expect = 0.039
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y C+ C S + H R HTGEKP+ C
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKC 45
Score = 26.7 bits (60), Expect = 0.079
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 25 HIRRHTGEKPFVC 37
H+GEKP+ C
Sbjct: 5 SSGIHSGEKPYGC 17
Score = 24.7 bits (55), Expect = 0.54
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 19 SGHMRDHIRRHTGEKPF 35
+ + +H R HT
Sbjct: 55 NSGLINHQRIHTSGPSS 71
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.041
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H HTGEKP
Sbjct: 25 YSSLTTHQVIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.11
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TG KP++C
Sbjct: 3 SGSSGTGVKPYMC 15
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.046
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
++ H R H GEK
Sbjct: 25 RLNLDMHQRVHMGEKTSGP 43
Score = 26.7 bits (60), Expect = 0.048
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
+ EKP+ C
Sbjct: 3 SGSSGSVEKPYKC 15
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.8 bits (58), Expect = 0.046
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEK 33
+ C C+Y T + +++ H+ RH+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 26.7 bits (60), Expect = 0.048
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
+GEKP+ C
Sbjct: 3 SGSSGSGEKPYEC 15
Score = 26.3 bits (59), Expect = 0.069
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H R H G
Sbjct: 25 KSLLIVHERTHAGVSGPSS 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.048
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
TGE+ + C
Sbjct: 3 SGSSGTGERHYEC 15
Score = 26.7 bits (60), Expect = 0.051
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H R HTGEKP
Sbjct: 25 KSTLIMHQRIHTGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (60), Expect = 0.049
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
H+ H R HTGEKP
Sbjct: 25 KSHLNQHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 0.13
Identities = 2/13 (15%), Positives = 3/13 (23%)
Query: 25 HIRRHTGEKPFVC 37
+ K C
Sbjct: 3 SGSSGSSTKSHQC 15
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.051
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
S + H HT EKP
Sbjct: 25 SYRLTQHWITHTREKPSGP 43
Score = 25.2 bits (56), Expect = 0.23
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
GEKP+ C
Sbjct: 3 SGSSGEGEKPYQC 15
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 26.4 bits (59), Expect = 0.064
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 19 SGHMRDHIRRHTGEKPF 35
G + H R HTG P
Sbjct: 23 KGSLTLHERIHTGSGPS 39
Score = 22.9 bits (50), Expect = 1.4
Identities = 2/11 (18%), Positives = 6/11 (54%)
Query: 27 RRHTGEKPFVC 37
+G++ + C
Sbjct: 3 SGSSGQRVYEC 13
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (59), Expect = 0.066
Identities = 3/13 (23%), Positives = 4/13 (30%)
Query: 25 HIRRHTGEKPFVC 37
GE+ C
Sbjct: 3 SGSSGHGERGHRC 15
Score = 26.0 bits (58), Expect = 0.11
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ + H R HTGEKP
Sbjct: 25 ASNFIQHRRIHTGEKPSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 26.4 bits (59), Expect = 0.066
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
TG+KP+ C
Sbjct: 3 SGSSGTGKKPYEC 15
Score = 25.6 bits (57), Expect = 0.14
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 19 SGHMRDHIRR-HTGEKPFVCP 38
+ + H R HTGEKP
Sbjct: 25 NTSLIRHWRYYHTGEKPSGPS 45
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.0 bits (58), Expect = 0.096
Identities = 3/14 (21%), Positives = 4/14 (28%)
Query: 24 DHIRRHTGEKPFVC 37
T K + C
Sbjct: 2 SSGSSGTDSKSYNC 15
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 25.9 bits (56), Expect = 0.098
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEK 33
Y C+ C + G ++ H+R HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 25.8 bits (57), Expect = 0.12
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 19 SGHMRDHIRRHTGEK 33
+ H+R H+R HTGE+
Sbjct: 23 TSHLRAHLRWHTGER 37
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 25.5 bits (57), Expect = 0.14
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ H + H+G+
Sbjct: 25 KDQLVSHQKTHSGQSGPSS 43
Score = 25.2 bits (56), Expect = 0.18
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 25 HIRRHTGEKPFVC 37
TGE P+ C
Sbjct: 3 SGSSGTGENPYEC 15
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 25.8 bits (56), Expect = 0.19
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 18 NSGHMRDHIRRHTGEKPFVC 37
+SG + H G++ C
Sbjct: 2 SSGSSGKRQKIHLGDRSQKC 21
Score = 22.3 bits (47), Expect = 4.9
Identities = 4/29 (13%), Positives = 8/29 (27%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPF 35
C C + + +G+K
Sbjct: 40 PMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 24.6 bits (54), Expect = 0.27
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEK 33
+ C C H++ H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.9 bits (55), Expect = 0.28
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 25 HIRRHTGEKPFVC 37
+GEK C
Sbjct: 3 SGSSGSGEKSHTC 15
Score = 24.1 bits (53), Expect = 0.50
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
+ C C + +R H R H GEK
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 24.5 bits (54), Expect = 0.29
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHTGEK 33
+ C W C S ++ H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 24.4 bits (52), Expect = 0.34
Identities = 9/28 (32%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 7 YACLWCDYHTLNSGHMRDHIR-RHTGEK 33
Y C +C++ + +S +++ HI+ +H+ EK
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 24.6 bits (54), Expect = 0.36
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 29 HTGEKPFVCP 38
+GEKP+ C
Sbjct: 5 SSGEKPYSCA 14
Score = 22.3 bits (48), Expect = 3.3
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
Y+C C ++ + H + HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 24.4 bits (53), Expect = 0.50
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKP 34
+ C CD ++ H R H +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 22.1 bits (47), Expect = 4.1
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 25 HIRRHTGEKPFVC 37
GE PF C
Sbjct: 3 SGSSGAGENPFKC 15
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 25.1 bits (54), Expect = 0.62
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 19 SGHMRDHIRRHTGEKPFVC 37
+ + TG F C
Sbjct: 4 GSSGKLYGSIFTGASKFRC 22
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 24.7 bits (53), Expect = 0.80
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 7 YACLWCDYHTLNSGHMRDHIR-RHTG---EKPFVCPF 39
Y C +C + T + H+ H +VC
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVE 55
Score = 24.3 bits (52), Expect = 0.83
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 6 LYACLWCDYHTLNSGHMRDHIRR-HTGEKPFVC 37
Y C+ C++ T + +H + H GE+ F
Sbjct: 50 SYVCVECNFLTKRYDALSEHNLKYHPGEENFKL 82
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 23.3 bits (50), Expect = 1.1
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 5 YLYACLWCDYHTLNSGHMRDHIRRHTGEKP 34
Y +AC C + S H+ HI H
Sbjct: 1 YKFACPECPKRFMRSDHLSKHITLHELLGE 30
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 23.2 bits (49), Expect = 1.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 9 CLWCDYHTLNSGHMRDHIRRHTGEK 33
C+ C + + H+R+HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 22.9 bits (49), Expect = 1.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 5 YLYACLWCDYHTLNSGHMRDHIRRHTGEK 33
Y +AC C + S H+ HI H +K
Sbjct: 1 YKFACPECPKRFMRSDHLTLHILLHENKK 29
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase
family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A
{Hypocrea jecorina} PDB: 2vn7_A*
Length = 599
Score = 23.3 bits (49), Expect = 2.4
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 11 WCDYHTLNSGHMRDHIRRHTGEKPFVCPF 39
+ G + + R++G
Sbjct: 391 EAAKYVPADGSLAEQFDRNSGTPLSALHL 419
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 22.2 bits (46), Expect = 6.7
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF 39
+ C C +S ++ HIR E VCP
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPV 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.145 0.557
Gapped
Lambda K H
0.267 0.0527 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 632,871
Number of extensions: 18976
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 316
Length of query: 39
Length of database: 6,701,793
Length adjustment: 13
Effective length of query: 26
Effective length of database: 6,338,820
Effective search space: 164809320
Effective search space used: 164809320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.9 bits)