RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4412
(39 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 35.4 bits (82), Expect = 6e-06
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 7 YACLWCDYHTLNSGHMRDHIRR-HTGEKPFVC 37
Y C C H+ HI++ HT E+P C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 33.9 bits (78), Expect = 2e-05
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 4 TYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF 39
++ C H+++H++ H+ + ++C F
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 31.2 bits (71), Expect = 3e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEK 33
+AC C + S H+ HI+ H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 29.5 bits (67), Expect = 0.001
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEK 33
+ C C H++ H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 27.6 bits (62), Expect = 0.007
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGE 32
Y C+ C S + H R HTGE
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 23.0 bits (50), Expect = 0.52
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 29 HTGEKPFVCP 38
H+GEKP+ C
Sbjct: 2 HSGEKPYGCV 11
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 26.5 bits (58), Expect = 0.016
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGE 32
+ C C Y + NS + H+R HTG+
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 26.5 bits (59), Expect = 0.016
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHTGEK 33
+ C W C S ++ H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 25.5 bits (56), Expect = 0.044
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 25 HIRRHTGEKPFVC 37
R TG KPF C
Sbjct: 2 STRGSTGIKPFQC 14
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 25.5 bits (56), Expect = 0.047
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGE 32
Y C C +S + H R HTGE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 24.7 bits (54), Expect = 0.093
Identities = 1/14 (7%), Positives = 4/14 (28%)
Query: 25 HIRRHTGEKPFVCP 38
+ + + C
Sbjct: 3 SEWQQRERRRYKCD 16
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.7 bits (53), Expect = 0.090
Identities = 9/28 (32%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 7 YACLWCDYHTLNSGHMRDHIR-RHTGEK 33
Y C +C++ + +S +++ HI+ +H+ EK
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.6 bits (54), Expect = 0.093
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEK 33
YAC CD + H +R+
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 23.1 bits (50), Expect = 0.47
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 27 RRHTGEKPFVCP 38
R HTGEKP+ C
Sbjct: 1 RTHTGEKPYACS 12
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.6 bits (54), Expect = 0.098
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEK 33
Y C C SG M+ HI + E
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
Score = 24.6 bits (54), Expect = 0.11
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 27 RRHTGEKPFVCP 38
R H+GEKP+ C
Sbjct: 1 RTHSGEKPYECY 12
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.1 bits (53), Expect = 0.15
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTG 31
+ C C + S H+ HIR HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 24.1 bits (52), Expect = 0.26
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 4 TYLYACLWCDYHTLNSGHMRDHIRRHTGEK 33
T+ C ++R HI+ H ++
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 23.0 bits (49), Expect = 0.55
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 16 TLNSGHMRDHIRRHTGEKPFVCPF 39
TL G + +++ +K F C F
Sbjct: 1 TLPRGSIDKYVK-EMPDKTFECLF 23
>d2iela1 c.26.2.4 (A:2-135) Hypothetical protein TTC0031 {Thermus
thermophilus [TaxId: 274]}
Length = 134
Score = 24.9 bits (54), Expect = 0.27
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 16 TLNSGHMRDHIRRHTGEKP 34
T S + ++ + P
Sbjct: 10 TAKSPELAAKLKELLAQDP 28
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 22.4 bits (48), Expect = 0.71
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 7 YACLWCD----YHTLNSGHM-RDHIRRHTGE 32
+ C W + +M H+RRHTGE
Sbjct: 3 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 33
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 22.5 bits (48), Expect = 0.79
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEK 33
Y C C ++ HIR HT +
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDVR 28
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 22.3 bits (48), Expect = 0.81
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHTGE 32
+ C + C +++ H+R HTGE
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSHTGE 30
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 22.3 bits (47), Expect = 0.94
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 9 CLWCDYHTLNSGHMRDHIRRHTGEK 33
C C L+ +++ H R+HTGEK
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.6 bits (45), Expect = 1.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHT 30
Y C CDY +S + H+R H+
Sbjct: 4 YKCKTCDYAAADSSSLNKHLRIHS 27
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 21.6 bits (46), Expect = 1.5
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGE 32
+ C C + H++ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTDT 33
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 21.6 bits (45), Expect = 2.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 7 YACLWCDYHTLNSGHMRDHIRRHTGEKPF 35
AC C + H+ H H+GEKP+
Sbjct: 6 VACEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 138
Score = 21.8 bits (46), Expect = 3.5
Identities = 5/35 (14%), Positives = 7/35 (20%)
Query: 5 YLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF 39
H L + H+ V P
Sbjct: 70 EFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPV 104
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 20.4 bits (43), Expect = 4.8
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHTGE 32
+ C + C ++R H+R HTG+
Sbjct: 3 FQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 20.4 bits (43), Expect = 5.1
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHTGE 32
Y+C CD + + + H + H +
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 19.6 bits (41), Expect = 9.6
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHT 30
Y C + C+ S +++ HI H
Sbjct: 3 YVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 19.6 bits (41), Expect = 9.7
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 7 YACLW--CDYHTLNSGHMRDHIRRHTG 31
YAC CD S + HIR HTG
Sbjct: 3 YACPVESCDRRFSRSADLTRHIRIHTG 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.331 0.145 0.557
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 167,912
Number of extensions: 4180
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 38
Length of query: 39
Length of database: 2,407,596
Length adjustment: 12
Effective length of query: 27
Effective length of database: 2,242,836
Effective search space: 60556572
Effective search space used: 60556572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.2 bits)