BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4416
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DHR8|NGBR_DANRE Nogo-B receptor OS=Danio rerio GN=nus1 PE=2 SV=1
Length = 274
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 131/300 (43%), Gaps = 46/300 (15%)
Query: 2 FIHRYFYKFLSLLAFCYYFLTSNIWT---SLIYILNPLKLNKNLHNEIVNNKSTLFLTLI 58
+ R+ + L L + +IW +++ +L PL L HN+ +
Sbjct: 7 MVWRFLHALLYLQRAIVAWFRVHIWRWKLAVVDLLLPLALG--FHNQKKTGPKGTRTSRR 64
Query: 59 NNW--------KKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNL 110
W K P H+ L++ E+ I Y DI +++WCM G+S+VSVYD + N
Sbjct: 65 VRWGADGRTLEKLPLHVGLLVTEEEIHYTDIANLVVWCMAVGISYVSVYDNQGVFKRNN- 123
Query: 111 LSAIKNNPLFEEFNKLTLG---FSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADD 167
S + L ++ L +G +S L + + Q+ +L+ K DD
Sbjct: 124 -SRLMEEILKQQQELLGMGSSKYSVEILKNGTNKQEHQVLSCQSMVKV-------LSPDD 175
Query: 168 IVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKC 227
G L+I+ Q L ++ + +T+ ++ +++ L+E
Sbjct: 176 --GRLSIV-------------------QAAQQLCRAVEQKEKTSKDINVSVLDSLLKESK 214
Query: 228 PLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGK 287
+PDP++ + G S+ G LPW+IRLTE ++ D S + L++++ CEQR GK
Sbjct: 215 NIPDPDLVLKFGTVQSTLGFLPWHIRLTEIISMPSHIDASYDDLYDALQRFAGCEQRLGK 274
>sp|Q96E22|NGBR_HUMAN Nogo-B receptor OS=Homo sapiens GN=NUS1 PE=1 SV=1
Length = 293
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 32/228 (14%)
Query: 62 KKPNHLVLIIGE--DVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPL 119
K P H+ L+I E ++DI +++WCM G+S++SVYD++ N+ L
Sbjct: 96 KLPVHMGLVITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKR-------NNSRL 148
Query: 120 FEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENL 179
+E K + Q+ L L+ SK P + DD V ++ + L
Sbjct: 149 MDEILK--------------QQQELLGLDC---SKYSPEFANSNDKDDQVLNCHLAVKVL 191
Query: 180 KWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIG 239
+ K ++ ++ C+ L + + T+L V DT+ CP DP++ + G
Sbjct: 192 SPEDGKADIVRAAQDFCQ---LVAQKQKRPTDLDV-DTLASLLSSNGCP--DPDLVLKFG 245
Query: 240 RKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGK 287
S+ G LPW+IRLTE ++ +IS F + LR+Y+ CEQR GK
Sbjct: 246 PVDSTLGFLPWHIRLTEIVSLPSHLNISYEDFFSALRQYAACEQRLGK 293
>sp|Q99LJ8|NGBR_MOUSE Nogo-B receptor OS=Mus musculus GN=Nus1 PE=2 SV=1
Length = 297
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 42/233 (18%)
Query: 62 KKPNHLVLIIGEDV--ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYN--LLSAI--- 114
K P H+ L++ E+V ++DI +++WCM G+S++SVYD++ N L+ I
Sbjct: 100 KLPVHMGLLVTEEVQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQ 159
Query: 115 KNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNI 174
+ L ++ +K + F+ NS +D LN K K AD + +
Sbjct: 160 QQELLGQDCSKYSAEFA------NSNDKDDQDLNCPSAVKVLSPEDGK--ADIVRAAQDF 211
Query: 175 IEENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEV 234
+ + T+L++ DLL S++ PDP++
Sbjct: 212 CQLVAQQQRKPTDLDV--------DLLGSLLS-------------------SHGFPDPDL 244
Query: 235 AIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGK 287
+ G S+ G LPW IRLTE ++ +IS F + LR+Y+ CEQR GK
Sbjct: 245 VLKFGPVDSTLGFLPWQIRLTEIVSLPSHLNISYEDFFSALRQYAACEQRLGK 297
>sp|Q12063|UPPS_YEAST Probable undecaprenyl pyrophosphate synthase OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NUS1 PE=1
SV=1
Length = 375
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 98/219 (44%), Gaps = 26/219 (11%)
Query: 77 LYNDITQIILWCMIAGVSFVSVYDYKNRLSH--YNLLSAIKNNPLFEEFNKLTLGFSFNK 134
L ND ++I+ W + AG+ + +YDY L L I +N L + F + K
Sbjct: 175 LLNDASEIVCWTVSAGIKHLMLYDYDGILQRNVPELRMEIHSN-LAKYFGPAHVPNYAVK 233
Query: 135 LTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRK 194
+ ++K I L + E + VG N IE N + E+++LS +
Sbjct: 234 IPHSNK-----IFYNLDGIETETD----------VG--NEIEANQEKDKIAIEISLLSNR 276
Query: 195 QCES---DLLNSIVELGETN-LSVSDTIMKERLQEKCPL--PDPEVAIVIGRKLSSYGLL 248
DL ++ EL N LSVSD M E L P+P++ + G L G
Sbjct: 277 DGRETIVDLTKTMAELCAVNELSVSDITMDLVDSELKQLVGPEPDLLLYFGPSLDLQGFP 336
Query: 249 PWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGK 287
PW+IRLTEF+ + ++ S F LR+Y+ C+ GK
Sbjct: 337 PWHIRLTEFYWEKDNNEVIYSVFIRGLRQYAGCKVNVGK 375
>sp|Q8U0I8|UPPS_PYRFU Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=uppS PE=3 SV=1
Length = 264
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 98/216 (45%), Gaps = 27/216 (12%)
Query: 81 ITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSK 140
+ +I+ WC G+ ++VY + + + LFEE F +L ++ +
Sbjct: 67 LEEIVEWCHELGIRILTVYAFSTENFKRSKEEVDRLMKLFEE--------KFRELVTDRR 118
Query: 141 TQDTLI-LNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCE-- 197
+ I +N + + P + + A++ + K++NY + + + E
Sbjct: 119 VHEYGIRVNVMGRKELLPKNVREA-AEEAERVTR------KYNNYFLNIALAYGGRSEIV 171
Query: 198 ---SDLLNSIVELGETNLS-VSDTIMKERLQEKCP-LPDPEVAIVIGRKLSSYGLLPWNI 252
D++N ++E G L +++ I+++ L P +PDP++ I G ++ L + I
Sbjct: 172 DAIKDIVNDVLE-GRLKLEDINEEIVRKYLY--VPNMPDPDIVIRTGGEVRISNFLLYQI 228
Query: 253 RLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
+E F D Y+ + F I+R++ K E+R+G+
Sbjct: 229 AYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
>sp|O59258|UPPS_PYRHO Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=uppS PE=3 SV=1
Length = 264
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 92/217 (42%), Gaps = 29/217 (13%)
Query: 81 ITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSK 140
+ +I+ WC G+ ++VY + + + LFEE F +L ++ +
Sbjct: 67 LEEILEWCHELGIRILTVYAFSTENFKRSKEEVDRLMKLFEE--------KFRELVTDKR 118
Query: 141 TQDTLI-LNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESD 199
+ + +N + + P + + K++NY LN+ S+
Sbjct: 119 VHEYGVRVNVIGRKELLPKSVRD-------AVEEAERATRKYNNYI--LNVALAYGGRSE 169
Query: 200 LLNSIVELGETNLSVSDTIMKERLQEK-------CP-LPDPEVAIVIGRKLSSYGLLPWN 251
+++++ ++ +S + E + E+ P +PDP++ I G ++ L +
Sbjct: 170 IVDAVKDIARD--VISGKLRIEEIDEELLRRYLYVPNMPDPDIVIRTGGEVRISNFLLYQ 227
Query: 252 IRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
I +E F D Y+ + F I+R++ K E+R+G+
Sbjct: 228 IAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
>sp|Q9V157|UPPS_PYRAB Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Pyrococcus
abyssi (strain GE5 / Orsay) GN=uppS PE=3 SV=1
Length = 264
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 33/219 (15%)
Query: 81 ITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSK 140
+ +I+ WC G+ ++VY + + + LFE+ F +L ++ +
Sbjct: 67 LEEILEWCHELGIRILTVYAFSTENFKRSKEEVERLMQLFEQ--------KFRELVTDKR 118
Query: 141 TQDTLI-LNTLKTSKAEPNGIHKYYADDIVGILNIIEE----NLKWSNYKTELNILSRKQ 195
+ + +N + + P + + EE K++NY + I +
Sbjct: 119 VHEYGVRVNVIGRKELLPKSVR-----------DAAEEAERATRKYNNYVLNVAIAYGGR 167
Query: 196 CE-SDLLNSIV-ELGETNLSVSDTIMKERLQEK---CP-LPDPEVAIVIGRKLSSYGLLP 249
E D + IV ++ + L V D + E L +K P +PDP++ I G ++ L
Sbjct: 168 SEIVDAVKDIVRDVMDGKLRVED--IDEELLKKYLYVPNMPDPDIVIRTGGEVRISNFLL 225
Query: 250 WNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
+ I +E F D Y+ + F I+R++ K E+R+G+
Sbjct: 226 YQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRERRFGR 264
>sp|Q5JGE1|UPPS_PYRKO Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=uppS PE=3 SV=1
Length = 264
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 33/219 (15%)
Query: 81 ITQIILWCMIAGVSFVSVYDY--KNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSN 138
+ +I+ WC + ++VY + +N + A+ N LFEE F +L +
Sbjct: 67 LEEILEWCRELNIRTLTVYAFSTENFKRSKEEVEALMN--LFEE--------KFKELVQD 116
Query: 139 SKTQDTLI-LNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCE 197
+ I +N L P + K K+SNY LNI
Sbjct: 117 ERVHRYGIRVNVLGRKDMLPENVRK-------AAEEAERATRKYSNYN--LNIALAYGGR 167
Query: 198 SDLLNSIVELGETNLSVSDTIMKERLQEKC-------P-LPDPEVAIVIGRKLSSYGLLP 249
S++ +++ E+ L I E + E+ P +PDP++ I G ++ L
Sbjct: 168 SEIADAVREIVRDVLE--GKIKPEDIDEEAIKRYLYYPNMPDPDIVIRTGGEVRISNFLL 225
Query: 250 WNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
+ I +E F D Y+ + F I+R++ K ++R+G+
Sbjct: 226 YQIAYSELFFVDVYFPEFRKIDFLRIIREFQKRQRRFGR 264
>sp|Q9Y7K8|UPPS_SCHPO Probable undecaprenyl pyrophosphate synthase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=nus1 PE=3 SV=1
Length = 258
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 204 IVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY 263
++ + L + D +KE + +P+P++ I+ L G PW +RL E F
Sbjct: 180 VISSTQVTLELIDKELKESV-----IPEPDLLIIFAPLLKLQGFPPWQLRLCEIFHDPIL 234
Query: 264 YDISASKFKNILRKYSKCEQRYG 286
Y + F L YS E R G
Sbjct: 235 YTTNYLTFFKALVHYSNAEMRLG 257
>sp|Q7MXJ4|ISPT_PORGI Isoprenyl transferase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=uppS PE=3 SV=1
Length = 254
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 229 LPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
+PDP++ I G + L W + TE F D + D A K + +YS E+R+GK
Sbjct: 183 IPDPDLFIRTGGEKRISNFLMWQMAYTELFFTDTLWPDFDADCLKAAIEEYSSRERRFGK 242
Query: 288 PT 289
+
Sbjct: 243 TS 244
>sp|Q9PJU2|ISPT_CHLMU Isoprenyl transferase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=uppS PE=3 SV=1
Length = 253
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 194 KQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIR 253
K+ DL N + + E +S+ ++ L + LPDP++ I G ++ L W I
Sbjct: 164 KELHQDLTNKKISINE----ISEELISSYL-DTSGLPDPDLLIRTGGEMRVSNFLLWQIA 218
Query: 254 LTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
TE + D + D +A ++ Y + +R GK
Sbjct: 219 YTELYVTDVLWPDFTAHDLLEAIKTYQQRSRRGGK 253
>sp|Q96S06|LMF1_HUMAN Lipase maturation factor 1 OS=Homo sapiens GN=LMF1 PE=1 SV=1
Length = 567
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 88 CMIAGVS---FVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDT 144
C+I GV F +V LS N L+ + P F+ TLGF F + K +
Sbjct: 288 CIIHGVLQILFQAVLIVSGNLSFLNWLTMV---PSLACFDDATLGFLFPSGPGSLKDRVL 344
Query: 145 LILNTLKTSKAEP--NGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLN 202
+ ++ ++ EP + + A+ +G+L L W + LN+LS +Q + N
Sbjct: 345 QMQRDIRGARPEPRFGSVVRRAANVSLGVL------LAWLSVPVVLNLLSSRQVMNTHFN 398
Query: 203 SI 204
S+
Sbjct: 399 SL 400
>sp|A8AYJ0|PRSA_STRGC Foldase protein PrsA OS=Streptococcus gordonii (strain Challis /
ATCC 35105 / CH1 / DL1 / V288) GN=prsA PE=3 SV=1
Length = 309
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 29/146 (19%)
Query: 83 QIILWCMIAGVSFVSVY-------DYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKL 135
+++ G F + D K++ SA N P + K G N +
Sbjct: 162 EVLAAAKAEGADFAQLAKDNSTDGDTKDKGGEIKFDSAATNVP--DAVKKAAFGLEANAV 219
Query: 136 TSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELN--ILSR 193
+ L T+++++ G YY IV +++ E++ KW +YK +L IL+
Sbjct: 220 SD---------LVTVRSNQ----GQASYY---IVKLVSKTEKSSKWEDYKDKLKQVILTA 263
Query: 194 KQCESDLLNSIV--ELGETNLSVSDT 217
KQ + + S+V EL + N+ V D
Sbjct: 264 KQNNTSFIQSVVAKELKDANIKVKDA 289
>sp|Q8DI29|ISPT_THEEB Isoprenyl transferase OS=Thermosynechococcus elongatus (strain
BP-1) GN=uppS PE=3 SV=1
Length = 251
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 182 SNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRK 241
+NY I+ C S + + V+ G + + D ++ ER LPDP++ I +
Sbjct: 148 TNYGGRREII--HACRS--IAAQVKAGLLDPADIDEVLFERHLYTGGLPDPDLLIRTSGE 203
Query: 242 LSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
L W + E + + D S F LR Y + ++R+G+
Sbjct: 204 LRISNFFLWQVAYAEIYVTKTLWPDFDRSAFHEALRDYQQRQRRFGR 250
>sp|Q5M677|ISPT_STRT2 Isoprenyl transferase OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=uppS PE=3 SV=1
Length = 249
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 183 NYKTELNILSRKQCESDLLNSIVELGETNLSV--SDTIMKERLQEKCPL--PDPEVAIVI 238
NY I+S Q + VE+G D I K + +K P DP++ I
Sbjct: 143 NYGGRAEIVSAVQA----IAKEVEIGRLRPEAIDEDLIAKHLMTDKLPYLYRDPDLIIRT 198
Query: 239 GRKLSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYG 286
+L LPW +EF+ D ++ D + Y+K +R+G
Sbjct: 199 SGELRLSNFLPWQSAYSEFYFTDVFWPDFDQQGLHQAISDYNKRHRRFG 247
>sp|Q5M1N6|ISPT_STRT1 Isoprenyl transferase OS=Streptococcus thermophilus (strain CNRZ
1066) GN=uppS PE=3 SV=1
Length = 249
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 183 NYKTELNILSRKQCESDLLNSIVELGETNLSV--SDTIMKERLQEKCPL--PDPEVAIVI 238
NY I+S Q + VE+G D I K + +K P DP++ I
Sbjct: 143 NYGGRAEIVSAVQA----IAKEVEIGRLRPEAIDEDLIAKHLMTDKLPYLYRDPDLIIRT 198
Query: 239 GRKLSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYG 286
+L LPW +EF+ D ++ D + Y+K +R+G
Sbjct: 199 SGELRLSNFLPWQSAYSEFYFTDVFWPDFDQQGLHQAISDYNKRHRRFG 247
>sp|Q8A1E0|ISPT_BACTN Isoprenyl transferase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=uppS
PE=3 SV=1
Length = 244
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 229 LPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
+PDP++ I G ++ L W +E + D ++ D +F + +Y + E+R+GK
Sbjct: 179 MPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDKEEFCKAIYEYQQRERRFGK 238
Query: 288 PT 289
+
Sbjct: 239 TS 240
>sp|Q554D9|SYNC_DICDI Asparagine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=asnS1 PE=1 SV=1
Length = 653
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 168 IVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEK 226
I +LN ++E+LKW++ K E+ I+ K+ E+ L +VE E ++ + T ++++E+
Sbjct: 143 IGDLLNPLKESLKWADLK-EVKIMLDKKLETTLGPKVVEAKEKKVAATTTAPVKKIEEQ 200
>sp|Q824H0|ISPT_CHLCV Isoprenyl transferase OS=Chlamydophila caviae (strain GPIC) GN=uppS
PE=3 SV=1
Length = 250
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 215 SDTIMKERLQ---EKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYY-DISASK 270
SD+I +E ++ + +PDP++ I G ++ L W I TE + D + D +
Sbjct: 174 SDSISEELIRLYLDTSEMPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDILWPDFKPNH 233
Query: 271 FKNILRKYSKCEQRYGK 287
F + ++ Y +R G+
Sbjct: 234 FLDAIKAYQHRSRRGGR 250
>sp|P60480|ISPT1_CORDI Isoprenyl transferase 1 OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=uppS1 PE=3 SV=1
Length = 265
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 230 PDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
PDP++ I + G L W +E + D Y+ F LR+YSK +R+GK
Sbjct: 207 PDPDLVIRTSGEQRLSGFLLWQAAYSEIWFTDTYWPAFRRVDFLRALREYSKRSRRFGK 265
>sp|O84456|ISPT_CHLTR Isoprenyl transferase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=uppS PE=3 SV=1
Length = 253
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 229 LPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
LPDP++ I G ++ L W I TE + D + D +A+ ++ Y + +R GK
Sbjct: 194 LPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTANDLLEAIKTYQQRSRRGGK 253
>sp|Q890L4|Y2634_CLOTE Putative ATP:guanido phosphotransferase CTC_02634 OS=Clostridium
tetani (strain Massachusetts / E88) GN=CTC_02634 PE=3
SV=1
Length = 340
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 119 LFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIV----GILN 173
LF+ N+LTLG S ++ +N K I+N K ++ + +HKY +D V GILN
Sbjct: 207 LFQVSNQLTLGLSEEEVINNLKAVVYQIINQEKLAREKIMKMHKYRIEDKVYRALGILN 265
>sp|Q732P6|ISPT_BACC1 Isoprenyl transferase OS=Bacillus cereus (strain ATCC 10987)
GN=uppS PE=3 SV=1
Length = 258
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 188 LNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQE---KCPLPDPEVAIVIGRKLSS 244
LN SR + S + + + + E + V D + +E L LPDPE+ I +L
Sbjct: 155 LNYGSRDEIVSAVQHMMKDREEGKVRVED-VSEEMLSSYLMTSSLPDPELLIRTSGELRI 213
Query: 245 YGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYG 286
+ W I +EF+ D Y+ D + N + + +R+G
Sbjct: 214 SNFMLWQIAYSEFWFTDVYWPDFTEEHLLNAITDFQHRGRRFG 256
>sp|O67291|ISPT_AQUAE Isoprenyl transferase OS=Aquifex aeolicus (strain VF5) GN=uppS PE=3
SV=1
Length = 231
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 170 GILNIIEE-NLKWSNYKTE-LNILSRKQCESDLLNSIVELGETNLS-VSDTIMKERLQEK 226
G++N++EE ++K LN+ D+L ++ ++ E S + + + L
Sbjct: 107 GLVNLMEELESDSKDFKNLFLNVAIDYGGRDDILRAVKKIMEVQPSKLDEETFSQFLDLS 166
Query: 227 CPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRY 285
C PDP++ I + L WN+ TE + D + D + +F L YS+ ++++
Sbjct: 167 CS-PDPDLLIRTAGEKRISNFLLWNLAYTELYFTDTLWPDFTREEFMKALEDYSRRKRKF 225
Query: 286 GK 287
G+
Sbjct: 226 GR 227
>sp|Q6HEZ2|ISPT_BACHK Isoprenyl transferase OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=uppS PE=3 SV=1
Length = 258
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 188 LNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQE---KCPLPDPEVAIVIGRKLSS 244
LN SR + S + + + + E + V D + +E L LPDPE+ I +L
Sbjct: 155 LNYGSRDEIVSAVQHMMKDSEEGKVRVED-VSEEMLSSYLMTSSLPDPELLIRTSGELRI 213
Query: 245 YGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYG 286
+ W I +EF+ D Y+ D + N + + +R+G
Sbjct: 214 SNFMLWQIAYSEFWFTDVYWPDFTEEHLLNAITDFQHRGRRFG 256
>sp|Q81WL2|ISPT_BACAN Isoprenyl transferase OS=Bacillus anthracis GN=uppS PE=3 SV=1
Length = 258
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 188 LNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQE---KCPLPDPEVAIVIGRKLSS 244
LN SR + S + + + + E + V D + +E L LPDPE+ I +L
Sbjct: 155 LNYGSRDEIVSAVQHMMKDSEEGKVRVED-VSEEMLSSYLMTSSLPDPELLIRTSGELRI 213
Query: 245 YGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYG 286
+ W I +EF+ D Y+ D + N + + +R+G
Sbjct: 214 SNFMLWQIAYSEFWFTDVYWPDFTEEHLLNAITDFQHRGRRFG 256
>sp|O14433|ARGD_KLULA Acetylornithine aminotransferase, mitochondrial OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=ARG8 PE=3 SV=2
Length = 423
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 61 WKKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSV 98
+ +PNHLVL G++ ILY+D+ AG++ ++
Sbjct: 28 YARPNHLVLTRGKNAILYDDVNNKEYIDFTAGIAVTAL 65
>sp|Q5L6U0|ISPT_CHLAB Isoprenyl transferase OS=Chlamydophila abortus (strain S26/3)
GN=uppS PE=3 SV=1
Length = 250
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 194 KQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIR 253
K+ DL+N + L SVS+ +++ L + +PDP++ I G ++ L W I
Sbjct: 161 KKLHHDLVNKKISLD----SVSEELIRLYL-DTSEIPDPDLLIRTGGEMRVSNFLLWQIA 215
Query: 254 LTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
TE + D + D + ++ Y +R GK
Sbjct: 216 YTELYVTDVLWPDFKPYHLLDAIKAYQHRSRRGGK 250
>sp|C1K5M2|NDPS_SOLLC Dimethylallylcistransferase, chloroplastic OS=Solanum lycopersicum
GN=NDPS1 PE=1 SV=1
Length = 303
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 201 LNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQF 260
+N ++++ + N ++ D + L+ KCP PD + I G + L W + TEF+ F
Sbjct: 219 MNGLLDVEDINKNLFD----QELESKCPNPD--LLIRTGGEQRVSNFLLWQLAYTEFY-F 271
Query: 261 DN--YYDISASKFKNILRKYSKCEQRYGKPT 289
N + D K + + + +R+G T
Sbjct: 272 TNTLFPDFGEEDLKEAIMNFQQRHRRFGGHT 302
>sp|Q4L5W2|ISPT_STAHJ Isoprenyl transferase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=uppS PE=3 SV=1
Length = 256
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 208 GETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEF-FQFDNYYDI 266
G+ + + ++++ + L PDPE+ I + L W +EF F + D
Sbjct: 173 GQDSKDIDESMINKHLMTHS-YPDPELLIRTSGEQRISNFLIWQSSYSEFIFNEKLWPDF 231
Query: 267 SASKFKNILRKYSKCEQRYG 286
+FKN L+ Y ++R+G
Sbjct: 232 DGEEFKNCLKIYQSRQRRFG 251
>sp|Q82TZ9|ISPT_NITEU Isoprenyl transferase OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=uppS PE=3 SV=1
Length = 263
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 230 PDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
P+P++ I G + L W + TE + D + D AS + Y K E+R+G+
Sbjct: 184 PEPDLFIRTGGECRISNFLLWQLAYTELYFTDTLWPDFDASALDEAIASYRKRERRFGR 242
>sp|B3EL39|ATPA_CHLPB ATP synthase subunit alpha OS=Chlorobium phaeobacteroides (strain
BS1) GN=atpA PE=3 SV=1
Length = 526
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 120 FEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEE-N 178
E F+K G +K T + ++ LK + P + K A G ++++ +
Sbjct: 412 LEAFSKF--GSDLDKATKAQLDRGARLVEILKQDQYVPMAVEKQVAIIFAGTQGVLDQLD 469
Query: 179 LKW-SNYKTE-LNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQE 225
L++ ++ E L++L K SD+LNSI E G+ ++ V+ +RL+E
Sbjct: 470 LQYIRRFEEEFLSLLEHKH--SDILNSIAETGQMDVDVA-----KRLKE 511
>sp|O87197|ISPT_THET2 Isoprenyl transferase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=uppS PE=3 SV=1
Length = 263
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 229 LPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNI-----LRKYSKCEQ 283
LPDP+ I ++ G L W +EF+ + D+ +F+ I LR Y E+
Sbjct: 204 LPDPDFIIRTSGEIRLSGFLLWQSAYSEFY----FADVLWPEFRKIDFLRALRSYQARER 259
Query: 284 RYGK 287
R+G+
Sbjct: 260 RFGR 263
>sp|Q5SH15|ISPT_THET8 Isoprenyl transferase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=uppS PE=3 SV=1
Length = 263
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 229 LPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNI-----LRKYSKCEQ 283
LPDP+ I ++ G L W +EF+ + D+ +F+ I LR Y E+
Sbjct: 204 LPDPDFIIRTSGEIRLSGFLLWQSAYSEFY----FADVLWPEFRKIDFLRALRSYQARER 259
Query: 284 RYGK 287
R+G+
Sbjct: 260 RFGR 263
>sp|Q89AP0|UPPS_BUCBP Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=uppS PE=3 SV=1
Length = 251
Score = 31.2 bits (69), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 195 QCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRL 254
+C++ LN+I E +VSD ++ + EK P+ ++ I G + L W I
Sbjct: 166 KCKNLSLNAITES-----TVSDFLL---INEKIPV---DLVIRTGGECRLSNFLVWQISY 214
Query: 255 TEFFQFDN--YYDISASKFKNILRKYSKCEQRYGKPT 289
+E + F N + D +FK + ++S E+R+G+ +
Sbjct: 215 SELY-FTNTLWPDFDRKEFKKAIDEFSNRERRFGRVS 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,927,842
Number of Sequences: 539616
Number of extensions: 4380337
Number of successful extensions: 11876
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 11845
Number of HSP's gapped (non-prelim): 86
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)