Query psy4416
Match_columns 290
No_of_seqs 156 out of 1400
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 16:33:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14837 undecaprenyl pyrophos 100.0 1.5E-53 3.3E-58 377.6 18.9 207 60-287 3-230 (230)
2 PRK14831 undecaprenyl pyrophos 100.0 1.4E-53 2.9E-58 383.6 18.9 209 59-288 16-249 (249)
3 PRK14836 undecaprenyl pyrophos 100.0 1.1E-53 2.3E-58 384.8 17.7 212 56-288 7-243 (253)
4 PRK14834 undecaprenyl pyrophos 100.0 2.4E-53 5.2E-58 381.4 19.5 214 55-289 6-244 (249)
5 PRK14827 undecaprenyl pyrophos 100.0 2.2E-53 4.8E-58 388.7 18.9 221 47-288 51-296 (296)
6 PRK14829 undecaprenyl pyrophos 100.0 2.6E-53 5.7E-58 380.8 19.0 209 59-288 10-243 (243)
7 PRK14830 undecaprenyl pyrophos 100.0 5.6E-53 1.2E-57 380.0 19.2 214 54-288 13-251 (251)
8 PRK14832 undecaprenyl pyrophos 100.0 7.8E-53 1.7E-57 378.2 18.8 211 59-290 14-249 (253)
9 PRK14841 undecaprenyl pyrophos 100.0 1.1E-52 2.4E-57 374.0 19.1 207 62-289 2-231 (233)
10 PRK14840 undecaprenyl pyrophos 100.0 1.3E-52 2.8E-57 376.2 19.1 214 53-287 8-250 (250)
11 PRK14833 undecaprenyl pyrophos 100.0 3.9E-52 8.4E-57 370.5 19.9 207 61-288 2-232 (233)
12 PRK14842 undecaprenyl pyrophos 100.0 4.3E-52 9.3E-57 371.3 19.4 208 60-288 5-238 (241)
13 PRK14838 undecaprenyl pyrophos 100.0 4.9E-52 1.1E-56 371.5 19.5 207 59-288 6-237 (242)
14 TIGR00055 uppS undecaprenyl di 100.0 1.1E-51 2.3E-56 365.6 17.8 201 65-286 1-226 (226)
15 PRK14828 undecaprenyl pyrophos 100.0 3.4E-51 7.3E-56 369.4 20.9 205 59-287 22-256 (256)
16 PRK14835 undecaprenyl pyrophos 100.0 5.3E-51 1.2E-55 370.7 20.7 210 59-287 37-275 (275)
17 PRK14839 undecaprenyl pyrophos 100.0 9.7E-51 2.1E-55 360.8 18.8 206 61-289 7-230 (239)
18 COG0020 UppS Undecaprenyl pyro 100.0 1.6E-50 3.4E-55 362.1 18.5 206 62-288 15-245 (245)
19 cd00475 CIS_IPPS Cis (Z)-Isopr 100.0 5.6E-49 1.2E-53 348.3 17.5 196 64-280 1-221 (221)
20 PRK10240 undecaprenyl pyrophos 100.0 2.2E-47 4.7E-52 339.3 17.0 194 75-289 20-223 (229)
21 PTZ00349 dehydrodolichyl dipho 100.0 9.1E-47 2E-51 346.3 19.0 211 53-282 9-308 (322)
22 PF01255 Prenyltransf: Putativ 100.0 4.7E-47 1E-51 338.0 14.1 198 70-287 1-223 (223)
23 KOG1602|consensus 100.0 1E-44 2.2E-49 319.9 17.5 215 57-289 30-268 (271)
24 KOG2818|consensus 100.0 3.2E-34 7E-39 254.0 14.6 238 9-287 11-263 (263)
25 PF13043 DUF3903: Domain of un 52.8 5.4 0.00012 25.3 0.3 12 278-289 14-25 (40)
26 PRK14178 bifunctional 5,10-met 50.8 56 0.0012 30.3 6.8 61 53-115 16-77 (279)
27 COG0302 FolE GTP cyclohydrolas 42.0 25 0.00055 30.7 2.9 26 65-90 96-121 (195)
28 PRK14168 bifunctional 5,10-met 39.0 90 0.0019 29.2 6.3 53 61-115 31-84 (297)
29 TIGR00063 folE GTP cyclohydrol 38.9 30 0.00066 29.9 2.9 26 65-90 82-107 (180)
30 PLN03044 GTP cyclohydrolase I; 38.4 33 0.00071 30.0 3.1 26 65-90 87-113 (188)
31 PRK14171 bifunctional 5,10-met 38.2 1.2E+02 0.0026 28.2 7.0 53 61-115 30-83 (288)
32 PF02739 5_3_exonuc_N: 5'-3' e 37.2 49 0.0011 28.1 4.0 36 63-98 50-105 (169)
33 PRK14181 bifunctional 5,10-met 36.4 1.2E+02 0.0026 28.2 6.6 55 53-109 16-71 (287)
34 PRK14173 bifunctional 5,10-met 35.9 1.2E+02 0.0026 28.2 6.6 60 53-114 19-79 (287)
35 PRK14184 bifunctional 5,10-met 35.7 1.2E+02 0.0026 28.3 6.5 53 61-115 29-82 (286)
36 PRK09347 folE GTP cyclohydrola 35.4 38 0.00083 29.5 3.0 26 65-90 90-115 (188)
37 PRK14179 bifunctional 5,10-met 35.1 1.2E+02 0.0027 28.1 6.5 52 62-115 31-83 (284)
38 cd00642 GTP_cyclohydro1 GTP cy 34.9 37 0.00081 29.5 2.9 25 66-90 88-112 (185)
39 PRK14188 bifunctional 5,10-met 34.6 1.3E+02 0.0027 28.2 6.5 50 64-114 32-82 (296)
40 PLN02616 tetrahydrofolate dehy 33.7 1.3E+02 0.0028 29.1 6.5 46 62-109 102-148 (364)
41 COG0731 Fe-S oxidoreductases [ 33.3 50 0.0011 30.9 3.6 41 63-105 79-120 (296)
42 PF01227 GTP_cyclohydroI: GTP 32.1 46 0.001 28.8 3.0 25 66-90 83-107 (179)
43 PRK14189 bifunctional 5,10-met 31.5 1.6E+02 0.0034 27.4 6.6 52 61-114 30-82 (285)
44 PRK14176 bifunctional 5,10-met 31.0 1.7E+02 0.0037 27.2 6.7 52 61-114 36-88 (287)
45 PF15560 Imm8: Immunity protei 30.3 2.6E+02 0.0057 22.9 6.8 88 186-278 1-105 (133)
46 PLN02897 tetrahydrofolate dehy 29.5 1.6E+02 0.0034 28.3 6.3 52 61-114 84-136 (345)
47 TIGR02804 ExbD_2 TonB system t 29.1 1.3E+02 0.0028 23.8 4.9 24 75-98 94-117 (121)
48 PF00763 THF_DHG_CYH: Tetrahyd 28.6 1.1E+02 0.0024 24.2 4.5 53 62-115 27-80 (117)
49 smart00729 Elp3 Elongator prot 28.0 1.6E+02 0.0036 24.1 5.8 37 66-102 154-190 (216)
50 PRK12721 secretion system appa 27.5 1.3E+02 0.0029 28.8 5.5 33 64-96 263-306 (349)
51 PRK13762 tRNA-modifying enzyme 27.4 83 0.0018 29.6 4.1 31 63-93 129-159 (322)
52 PRK10792 bifunctional 5,10-met 27.2 1.9E+02 0.0041 26.9 6.3 50 63-114 33-83 (285)
53 PRK14175 bifunctional 5,10-met 27.1 1.9E+02 0.0041 26.9 6.3 52 61-114 30-82 (286)
54 TIGR02803 ExbD_1 TonB system t 26.6 1.5E+02 0.0034 23.3 5.0 24 75-98 95-118 (122)
55 PRK12606 GTP cyclohydrolase I; 26.4 66 0.0014 28.4 3.0 26 65-90 102-127 (201)
56 PRK09482 flap endonuclease-lik 26.1 1.1E+02 0.0023 28.0 4.4 36 63-98 46-103 (256)
57 smart00475 53EXOc 5'-3' exonuc 25.9 1.2E+02 0.0027 27.6 4.8 39 63-101 48-106 (259)
58 PRK14166 bifunctional 5,10-met 25.8 2.1E+02 0.0046 26.5 6.4 52 61-114 28-80 (282)
59 PTZ00484 GTP cyclohydrolase I; 25.8 65 0.0014 29.6 2.9 26 65-90 161-186 (259)
60 TIGR02801 tolR TolR protein. T 25.1 1.6E+02 0.0035 23.3 4.9 36 63-98 91-126 (129)
61 PRK14194 bifunctional 5,10-met 24.7 2.3E+02 0.005 26.6 6.5 51 62-114 32-83 (301)
62 PRK14186 bifunctional 5,10-met 24.2 2.4E+02 0.0051 26.4 6.4 52 61-114 30-82 (297)
63 cd00008 53EXOc 5'-3' exonuclea 24.0 1.3E+02 0.0028 27.0 4.5 36 64-99 50-105 (240)
64 TIGR01404 FlhB_rel_III type II 24.0 1.8E+02 0.0039 27.7 5.7 34 64-97 262-306 (342)
65 PRK09108 type III secretion sy 23.8 1.7E+02 0.0036 28.1 5.5 34 64-97 265-309 (353)
66 PLN02516 methylenetetrahydrofo 23.7 2.6E+02 0.0057 26.2 6.6 52 61-114 37-89 (299)
67 PRK14174 bifunctional 5,10-met 23.1 2.2E+02 0.0048 26.6 6.0 51 62-114 30-81 (295)
68 PF00390 malic: Malic enzyme, 22.4 84 0.0018 27.3 2.8 43 198-241 26-76 (182)
69 PRK12468 flhB flagellar biosyn 22.4 2E+02 0.0043 28.0 5.7 34 64-97 270-314 (386)
70 PF13302 Acetyltransf_3: Acety 22.2 1.9E+02 0.0042 22.2 4.8 42 66-107 86-132 (142)
71 PRK13109 flhB flagellar biosyn 22.2 2E+02 0.0044 27.6 5.7 33 64-96 272-315 (358)
72 COG4792 EscU Type III secretor 21.4 5.9E+02 0.013 24.1 8.2 44 53-96 250-307 (349)
73 cd05009 SIS_GlmS_GlmD_2 SIS (S 21.3 1.7E+02 0.0038 23.2 4.5 40 64-103 61-100 (153)
74 PF02601 Exonuc_VII_L: Exonucl 21.2 2E+02 0.0043 26.7 5.4 41 60-102 10-50 (319)
75 PRK06298 type III secretion sy 20.9 2.3E+02 0.0049 27.3 5.7 34 64-97 264-308 (356)
76 PRK14976 5'-3' exonuclease; Pr 20.7 1.6E+02 0.0035 27.1 4.6 37 63-99 54-110 (281)
77 PRK12773 flhB flagellar biosyn 20.5 2.6E+02 0.0057 29.0 6.3 33 64-96 562-605 (646)
78 PRK14177 bifunctional 5,10-met 20.5 3.2E+02 0.0068 25.5 6.4 50 63-114 33-83 (284)
79 PRK14169 bifunctional 5,10-met 20.3 3.2E+02 0.007 25.4 6.4 52 61-114 28-80 (282)
80 PRK14193 bifunctional 5,10-met 20.1 3.4E+02 0.0074 25.2 6.5 51 62-114 31-82 (284)
No 1
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-53 Score=377.61 Aligned_cols=207 Identities=13% Similarity=0.241 Sum_probs=169.2
Q ss_pred CCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHH
Q psy4416 60 NWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEE 122 (290)
Q Consensus 60 ~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~ 122 (290)
.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +++.+
T Consensus 3 ~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm--~L~~~ 80 (230)
T PRK14837 3 KNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLM--FLIAD 80 (230)
T ss_pred CCCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH--HHHHH
Confidence 368999999999999 3799999999999999999999999999 7999998 666666 55543
Q ss_pred hhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHH
Q psy4416 123 FNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLN 202 (290)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~ 202 (290)
. +.. . ......+..++.+.|+.. ++|++....++..++.| +++++++||+|.+||||+||++
T Consensus 81 ~--l~~--~---~~~~~~~~irvr~iGd~~----------~Lp~~l~~~i~~~e~~T-~~n~~~~Lnia~~Yggr~EI~~ 142 (230)
T PRK14837 81 Y--LSS--E---FNFYKKNNIKIIVSGDIE----------SLSEEVKKSIKDAISFT-KNFDGLVLNLAINYGGRNEIVR 142 (230)
T ss_pred H--HHH--H---HHHHHHCCcEEEEEcChh----------hCCHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCHHHHHH
Confidence 2 210 0 111122344555556542 34555556666776665 7899999999999999999999
Q ss_pred HHHHHHhccCCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHHHHH
Q psy4416 203 SIVELGETNLSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNILRKY 278 (290)
Q Consensus 203 a~r~l~~~~~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL~~Y 278 (290)
|++++++..++++++ .+++.|+.. +.|||||+||||||.|||||||||++||||||++.+ |||+..+|.+||.+|
T Consensus 143 A~~~~~~~~~~~~~i~e~~~~~~L~~~-~~p~~DLlIRTsGE~RLSnFLLWQ~ayaElyF~d~lWPdF~~~dl~~ai~~y 221 (230)
T PRK14837 143 AVKKFLSSGLDLETLNENVFSKFLDNP-ELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECF 221 (230)
T ss_pred HHHHHHhcCCChhhCCHHHHHHhhccC-CCCCCCEEEECCCcccccccHHHhhhheEEEECCCCCccCCHHHHHHHHHHH
Confidence 999999775555443 677888864 899999999999999999999999999999999997 999999999999999
Q ss_pred hhhhhccCC
Q psy4416 279 SKCEQRYGK 287 (290)
Q Consensus 279 s~~~~R~Gk 287 (290)
++|+||||+
T Consensus 222 ~~R~RrfG~ 230 (230)
T PRK14837 222 KNRKRNFGR 230 (230)
T ss_pred hcccCcCCC
Confidence 999999996
No 2
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.4e-53 Score=383.59 Aligned_cols=209 Identities=15% Similarity=0.263 Sum_probs=169.1
Q ss_pred cCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhH
Q psy4416 59 NNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFE 121 (290)
Q Consensus 59 ~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~ 121 (290)
+.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +++.
T Consensus 16 ~~~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm--~L~~ 93 (249)
T PRK14831 16 DPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLM--TLFE 93 (249)
T ss_pred ccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHH--HHHH
Confidence 4578999999999999 3799999999999999999999999999 8999998 666666 5554
Q ss_pred HhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHH
Q psy4416 122 EFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLL 201 (290)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv 201 (290)
+. +.. . ......+..++.+.|+.. ++|++....++..++.| +++++++||+|++||||+||+
T Consensus 94 ~~--l~~--~---~~~~~~~~iri~~iG~~~----------~Lp~~l~~~i~~~e~~T-~~~~~~~Lnia~~Yggr~EIv 155 (249)
T PRK14831 94 RV--LRR--E---LEELMEENVRIRFVGDLD----------PLPKSLQEEISRSTELT-KNNNGIHFNVCTNYGGRQEIV 155 (249)
T ss_pred HH--HHH--H---HHHHHHCCcEEEEEechh----------hCCHHHHHHHHHHHHHh-ccCCceEEEEEecCCCHHHHH
Confidence 32 210 0 001112344565666542 34444445666666665 789999999999999999999
Q ss_pred HHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHH
Q psy4416 202 NSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKN 273 (290)
Q Consensus 202 ~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~ 273 (290)
+|+++++++. ++++++ .+++.|+. .+.|||||+||||||.|||||||||++||||||++.+ |||++.+|.+
T Consensus 156 ~A~~~l~~~v~~g~l~~~~i~e~~~~~~L~t-~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~dl~~ 234 (249)
T PRK14831 156 QAARAIAQQVQQGELDPSEIDENLFESELYT-AGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHK 234 (249)
T ss_pred HHHHHHHHHHHcCCCChHhCCHHHHHHhhcc-CCCCCCCEEEeCCCCccccCchhhhhhceeEEECCCCCCcCCHHHHHH
Confidence 9999998762 444443 67788886 4889999999999999999999999999999999997 9999999999
Q ss_pred HHHHHhhhhhccCCC
Q psy4416 274 ILRKYSKCEQRYGKP 288 (290)
Q Consensus 274 aL~~Ys~~~~R~Gk~ 288 (290)
||.+|++|+||||++
T Consensus 235 al~~y~~R~RRfG~~ 249 (249)
T PRK14831 235 ALLDYQSRERRFGGV 249 (249)
T ss_pred HHHHHHhcccCCCCC
Confidence 999999999999984
No 3
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.1e-53 Score=384.79 Aligned_cols=212 Identities=18% Similarity=0.309 Sum_probs=171.3
Q ss_pred hhhcCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccch
Q psy4416 56 TLINNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNP 118 (290)
Q Consensus 56 ~v~~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~ 118 (290)
.+++.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +
T Consensus 7 ~~~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm--~ 84 (253)
T PRK14836 7 MIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALM--E 84 (253)
T ss_pred cccccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHH--H
Confidence 4566789999999999999 3799999999999999999999999999 7999998 556666 5
Q ss_pred hhHHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHH
Q psy4416 119 LFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCES 198 (290)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~ 198 (290)
++... +.. ..+....+..++.+.|+.. ++|++....++..++.| +++++++||+|++||||+
T Consensus 85 l~~~~--l~~-----~~~~~~~~~irv~viG~~~----------~Lp~~~~~~i~~~e~~T-~~n~~~~Lnla~~YggR~ 146 (253)
T PRK14836 85 LFLKA--LDR-----EVDKLHRNGIRVRFIGDRS----------RLSPKLQERMEYAERLT-ASNTRLILSLAVSYGGRW 146 (253)
T ss_pred HHHHH--HHH-----HHHHHHHCCCEEEEEeccc----------cCCHHHHHHHHHHHHHh-ccCCceEEEEEecCCCHH
Confidence 44422 210 0111122344565666542 23444446666666666 788999999999999999
Q ss_pred HHHHHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHH
Q psy4416 199 DLLNSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASK 270 (290)
Q Consensus 199 eIv~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~ 270 (290)
||++|++++++.. ++++++ .+++.|+.. +.|||||||||||+.|||||||||++||||||++.+ |||++.|
T Consensus 147 EI~~A~k~l~~~~~~g~l~~~~i~e~~i~~~L~~~-~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~d 225 (253)
T PRK14836 147 DIVTAARALAREVAAGKLAPDEIDEALLAQHLALA-DLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFDAQE 225 (253)
T ss_pred HHHHHHHHHHHHHHhCCCChHhCCHHHHHHHhccC-CCCCCCEEEEcCCcccccCChHHHHhheEEEeCCCCCCcCCHHH
Confidence 9999999998662 444443 678888874 899999999999999999999999999999999997 9999999
Q ss_pred HHHHHHHHhhhhhccCCC
Q psy4416 271 FKNILRKYSKCEQRYGKP 288 (290)
Q Consensus 271 f~~aL~~Ys~~~~R~Gk~ 288 (290)
|.+||.+|++|+||||+.
T Consensus 226 ~~~aL~~y~~R~RRfG~~ 243 (253)
T PRK14836 226 LQQALEDYASRERRFGKT 243 (253)
T ss_pred HHHHHHHHHccCccCCCc
Confidence 999999999999999985
No 4
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.4e-53 Score=381.38 Aligned_cols=214 Identities=15% Similarity=0.253 Sum_probs=172.8
Q ss_pred HhhhcCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccc
Q psy4416 55 LTLINNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNN 117 (290)
Q Consensus 55 ~~v~~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~ 117 (290)
.++.+.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+
T Consensus 6 ~~~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm-- 83 (249)
T PRK14834 6 KDESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLF-- 83 (249)
T ss_pred CCCCCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHH--
Confidence 35667889999999999999 3799999999999999999999999999 7999998 556666
Q ss_pred hhhHHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcH
Q psy4416 118 PLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCE 197 (290)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr 197 (290)
+++.+. +.. .......+..++.+.|+.. ++|++....++..++.| +++++++||+|++||||
T Consensus 84 ~L~~~~--l~~-----~~~~~~~~~iri~viGd~~----------~Lp~~l~~~i~~~e~~T-~~~~~~~lnla~~Yggr 145 (249)
T PRK14834 84 GLLRLF--IRR-----DLAELHRNGVRVRVIGERA----------GLEADICALLNEAEELT-RNNTGLNLVIAFNYGSR 145 (249)
T ss_pred HHHHHH--HHH-----HHHHHHHCCcEEEEEcChh----------hCCHHHHHHHHHHHHhh-ccCCceEEEEEeccCCH
Confidence 444422 210 0011112333455556432 34555556666666666 78999999999999999
Q ss_pred HHHHHHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHH
Q psy4416 198 SDLLNSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISAS 269 (290)
Q Consensus 198 ~eIv~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~ 269 (290)
+||++|+|++++.. ++++|+ .+++.|+.. ..|||||||||||+.|||||||||++||||||++.+ |+|++.
T Consensus 146 ~EI~~A~k~~~~~~~~g~~~~~dI~e~~i~~~L~~~-~~pdpDLLIRTsGe~RLSnFLlWQ~~yaElyF~~~lWPdf~~~ 224 (249)
T PRK14834 146 DEIARAVRRLAREVAEGRLDPASIDAETISANLDTA-DIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKA 224 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhCCHHHHHHHhccC-CCCCCCEEEEcCCcccccCChHHhHhheEEEeCCCCCCcCCHH
Confidence 99999999998662 444444 788888864 899999999999999999999999999999999997 999999
Q ss_pred HHHHHHHHHhhhhhccCCCC
Q psy4416 270 KFKNILRKYSKCEQRYGKPT 289 (290)
Q Consensus 270 ~f~~aL~~Ys~~~~R~Gk~~ 289 (290)
+|.+||.+||+|+||||+..
T Consensus 225 d~~~al~~y~~r~rRfG~~~ 244 (249)
T PRK14834 225 ALEAAIEEYARRERRFGGLA 244 (249)
T ss_pred HHHHHHHHHHhcCccCCCCC
Confidence 99999999999999999864
No 5
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.2e-53 Score=388.66 Aligned_cols=221 Identities=14% Similarity=0.200 Sum_probs=178.6
Q ss_pred cccchhhhHhhhcCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-
Q psy4416 47 VNNKSTLFLTLINNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN- 109 (290)
Q Consensus 47 ~~~~~~~~~~v~~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~- 109 (290)
.++|++.....++.+.+|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+.
T Consensus 51 ~~~~~~~~~~~l~~~~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~ 130 (296)
T PRK14827 51 PQHTSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPE 130 (296)
T ss_pred CCCcccccccccCCCCCCCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHH
Confidence 3456666677777889999999999999 3799999999999999999999999998 7999998
Q ss_pred hHhhhccchhhHHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEE
Q psy4416 110 LLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELN 189 (290)
Q Consensus 110 ll~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vn 189 (290)
+++.|+ +++++. +.. .......+..++.|.|+.. ++++++...++..|+.| ++|++++||
T Consensus 131 EV~~Lm--~L~~~~--l~~-----~~~~~~~~~irir~iG~~~----------~Lp~~v~~~i~~~e~~T-~~n~~~~Ln 190 (296)
T PRK14827 131 EVRFLM--GFNRDV--VRR-----RRDNLNKMGVRIRWVGSRP----------RLWRSVINELAIAEEMT-KSNDVITIN 190 (296)
T ss_pred HHHHHH--HHHHHH--HHH-----HHHHHHHCCcEEEEEechh----------hCCHHHHHHHHHHHHHh-cCCCCeEEE
Confidence 566666 555432 220 0111122344566666542 34445556666676666 789999999
Q ss_pred EEeCCCcHHHHHHHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCC
Q psy4416 190 ILSRKQCESDLLNSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDN 262 (290)
Q Consensus 190 lls~ydGr~eIv~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~ 262 (290)
+|++||||+||++|+++++++. ++++++ .++++|+.. +.|||||+||||||.|||||||||++||||||++.
T Consensus 191 ia~~YgGR~EI~~A~~~i~~~v~~g~l~~~~I~e~~i~~~L~t~-~~PdpDLlIRTsGE~RLSnFLLWQ~ayaEl~F~d~ 269 (296)
T PRK14827 191 YCVNYGGRTEITEATREIAREAAAGRLNPERITESTIARHLQRP-DIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDK 269 (296)
T ss_pred EEecCCCHHHHHHHHHHHHHHHHcCCCChhhccHHHHHHHhccC-CCCCCCEEEecCCcccccCchHhhhhheEEEecCC
Confidence 9999999999999999998763 344444 678888874 89999999999999999999999999999999999
Q ss_pred C-CCCCHHHHHHHHHHHhhhhhccCCC
Q psy4416 263 Y-YDISASKFKNILRKYSKCEQRYGKP 288 (290)
Q Consensus 263 ~-p~~~~~~f~~aL~~Ys~~~~R~Gk~ 288 (290)
+ |||+++||.+||.+|++|+||||+.
T Consensus 270 lWPdF~~~dl~~al~~y~~R~RRfG~~ 296 (296)
T PRK14827 270 LWPDYDRRDLWAACEEYASRNRRFGSA 296 (296)
T ss_pred CCccCCHHHHHHHHHHHhhccccCCCC
Confidence 7 9999999999999999999999974
No 6
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.6e-53 Score=380.76 Aligned_cols=209 Identities=11% Similarity=0.192 Sum_probs=169.4
Q ss_pred cCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhH
Q psy4416 59 NNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFE 121 (290)
Q Consensus 59 ~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~ 121 (290)
+.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ ++++
T Consensus 10 ~~~~~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm--~L~~ 87 (243)
T PRK14829 10 PKNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLM--GFSR 87 (243)
T ss_pred ccCCCCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHH--HHHH
Confidence 4578999999999999 3799999999999999999999999998 7999998 667777 6655
Q ss_pred HhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHH
Q psy4416 122 EFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLL 201 (290)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv 201 (290)
+. +.. . .+....+..++.+.|+.. ++|.+....++..|+.| +++++++||+|++||||+||+
T Consensus 88 ~~--l~~--~---~~~~~~~~iri~~iG~~~----------~Lp~~~~~~i~~~e~~T-~~~~~~~Lnia~~Y~gr~EI~ 149 (243)
T PRK14829 88 DV--IHR--R---REQMDEWGVRVRWSGRRP----------RLWKSVIDELEAAEELT-KNNTTMDLVFCVNYGGRAEIA 149 (243)
T ss_pred HH--HHH--H---HHHHHHcCcEEEEEechh----------hCCHHHHHHHHHHHHHh-ccCCceEEEEEecCCCHHHHH
Confidence 32 220 0 011122334555556542 34445556666666666 788999999999999999999
Q ss_pred HHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHH
Q psy4416 202 NSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKN 273 (290)
Q Consensus 202 ~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~ 273 (290)
+|++++++.. ++++++ .+++.|+.. +.|||||+||||||.|||||||||++||||||++.+ |||++.+|.+
T Consensus 150 ~A~~~~~~~~~~g~~~~~~i~e~~i~~~L~~~-~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~ 228 (243)
T PRK14829 150 DAAAAIAREVRDGKISGDRVTEKMISDHLYNP-DMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWA 228 (243)
T ss_pred HHHHHHHHHHHcCCCChHhCCHHHHHHHhccC-CCCCCCEEEEcCCcccccCchHHhHhheEEEeCCCCCCcCCHHHHHH
Confidence 9999998652 444444 677888864 899999999999999999999999999999999996 9999999999
Q ss_pred HHHHHhhhhhccCCC
Q psy4416 274 ILRKYSKCEQRYGKP 288 (290)
Q Consensus 274 aL~~Ys~~~~R~Gk~ 288 (290)
||.+|++|+||||+.
T Consensus 229 al~~y~~r~rRfG~~ 243 (243)
T PRK14829 229 AIDEYAHRDRRFGGV 243 (243)
T ss_pred HHHHHhccCccCCCC
Confidence 999999999999984
No 7
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5.6e-53 Score=379.98 Aligned_cols=214 Identities=17% Similarity=0.273 Sum_probs=171.7
Q ss_pred hHhhhcCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhcc
Q psy4416 54 FLTLINNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKN 116 (290)
Q Consensus 54 ~~~v~~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~ 116 (290)
...+++.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||+|+. +++.|+
T Consensus 13 ~~~~~~~~~~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm- 91 (251)
T PRK14830 13 FDEELDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLM- 91 (251)
T ss_pred cccccCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHH-
Confidence 344456688999999999999 2799999999999999999999999999 7999998 555555
Q ss_pred chhhHHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCc
Q psy4416 117 NPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQC 196 (290)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydG 196 (290)
+++.+. +.. . .+....+..++.+.|+.. ++|++....++..|+.| +++++++||+|++|||
T Consensus 92 -~l~~~~--l~~--~---~~~~~~~~iri~viG~~~----------~Lp~~~~~~~~~~e~~T-~~~~~~~Lnia~~Ygg 152 (251)
T PRK14830 92 -NLPVEF--LDK--F---VPELIENNVKVNVIGDTD----------RLPEHTLRALEKAIEKT-KNNTGLILNFALNYGG 152 (251)
T ss_pred -HHHHHH--HHH--H---HHHHHHcCCEEEEEcChh----------hCCHHHHHHHHHHHHHc-cCCCceEEEEEecCCC
Confidence 444422 210 0 011112344555556432 34555556677777776 7899999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCH
Q psy4416 197 ESDLLNSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISA 268 (290)
Q Consensus 197 r~eIv~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~ 268 (290)
|+||++|++++++.. ++++++ .+++.|+.. +.|||||+||||||.|||||||||++||||||++.+ |||++
T Consensus 153 R~EI~~A~~~~~~~v~~g~l~~~~I~e~~i~~~L~~~-~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~ 231 (251)
T PRK14830 153 RAEIVSAVKEIAKDVLDGKLNPEDITEELISNYLMTK-GLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDE 231 (251)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHhCCHHHHHHHhCcC-CCCCCCEEEeCCCCCcccCChHHHHcceEEEECCCCCCcCCH
Confidence 999999999998652 344443 778888864 889999999999999999999999999999999997 99999
Q ss_pred HHHHHHHHHHhhhhhccCCC
Q psy4416 269 SKFKNILRKYSKCEQRYGKP 288 (290)
Q Consensus 269 ~~f~~aL~~Ys~~~~R~Gk~ 288 (290)
.||.+||.+|++|+||||++
T Consensus 232 ~d~~~aL~~y~~r~rrfG~~ 251 (251)
T PRK14830 232 EELLKAIKDYQSRQRRFGGV 251 (251)
T ss_pred HHHHHHHHHHHhcccCCCCC
Confidence 99999999999999999984
No 8
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=7.8e-53 Score=378.18 Aligned_cols=211 Identities=15% Similarity=0.262 Sum_probs=170.0
Q ss_pred cCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhH
Q psy4416 59 NNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFE 121 (290)
Q Consensus 59 ~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~ 121 (290)
+.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||++ +++.|+ .++.
T Consensus 14 ~~~~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm--~L~~ 91 (253)
T PRK14832 14 DPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLM--LLFE 91 (253)
T ss_pred CCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH--HHHH
Confidence 3468999999999999 3799999999999999999999999999 7999998 566666 5554
Q ss_pred HhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHH
Q psy4416 122 EFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLL 201 (290)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv 201 (290)
+. +.. . ......+..++.+.|+.. ++|++....++..|+.| +++++++||+|.+||||+||+
T Consensus 92 ~~--l~~--~---~~~~~~~~irv~~iGd~~----------~Lp~~l~~~i~~~e~~T-~~~~~~~Lnia~~Yggr~EI~ 153 (253)
T PRK14832 92 RL--LRR--E---LAQMHREGVRISFIGDLS----------ALPKSLQTEMERSMTET-LNNQAIHFTVAVNYGSRNEIT 153 (253)
T ss_pred HH--HHH--H---HHHHHhcCCEEEEEeCch----------hCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCHHHHH
Confidence 22 210 0 111122344555556432 34555556666776666 789999999999999999999
Q ss_pred HHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHH
Q psy4416 202 NSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKN 273 (290)
Q Consensus 202 ~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~ 273 (290)
+|++++++.. ++++++ .+++.|+.. +.|||||+||||||.|||||||||++||||||++.+ |||++.||.+
T Consensus 154 ~A~k~~~~~v~~g~~~~~~i~e~~i~~~L~~~-~~Pd~DLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~ 232 (253)
T PRK14832 154 RACRQVAELVQQGKLSADAVNEQLVEQHLYTA-DTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQ 232 (253)
T ss_pred HHHHHHHHHHHhCCCChhhCCHHHHHHhhCcC-CCCCCCEEEECCCcccccCcHHHHHhheEEEECCCCCCcCCHHHHHH
Confidence 9999998652 344433 678888864 899999999999999999999999999999999997 9999999999
Q ss_pred HHHHHhhhhhccCCCCC
Q psy4416 274 ILRKYSKCEQRYGKPTV 290 (290)
Q Consensus 274 aL~~Ys~~~~R~Gk~~~ 290 (290)
||.+|++|+||||+..+
T Consensus 233 al~~y~~R~RRfG~~~~ 249 (253)
T PRK14832 233 ALLSYQKRDRRFGQVKA 249 (253)
T ss_pred HHHHHHhccccCCCccc
Confidence 99999999999999764
No 9
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.1e-52 Score=374.00 Aligned_cols=207 Identities=14% Similarity=0.306 Sum_probs=169.4
Q ss_pred CCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHHhh
Q psy4416 62 KKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEEFN 124 (290)
Q Consensus 62 kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~~~ 124 (290)
++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||++ +++.|+ +++.+.
T Consensus 2 ~~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm--~L~~~~- 78 (233)
T PRK14841 2 RIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLM--DLFVQM- 78 (233)
T ss_pred CCCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHH--HHHHHH-
Confidence 5899999999999 3799999999999999999999999999 7999998 666666 555432
Q ss_pred hhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHHH
Q psy4416 125 KLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSI 204 (290)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a~ 204 (290)
+.. . ......+..++.+.|+.. ++|++....++..|+.| +++++++||+|++||||+||++|+
T Consensus 79 -l~~--~---~~~~~~~~irvr~iG~~~----------~Lp~~~~~~i~~~e~~T-~~~~~~~Lnia~~Yggr~EI~~A~ 141 (233)
T PRK14841 79 -IDR--E---MELLRRERVRVRILGRKE----------GLPEKVLKKWQEVEEKT-KEFDRMTLVIAFNYGGRREILDAV 141 (233)
T ss_pred -HHH--H---HHHHHHcCcEEEEEeChh----------hCCHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCHHHHHHHH
Confidence 210 0 001112344555556432 34555557777777776 788999999999999999999999
Q ss_pred HHHHhcc-----CCcchHHHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHHHHH
Q psy4416 205 VELGETN-----LSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNILRKY 278 (290)
Q Consensus 205 r~l~~~~-----~~~~di~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL~~Y 278 (290)
++++.+. .++++..+++.|+.. +.||||||||||||.|||||||||++||||||++.+ |||++.+|.+||.+|
T Consensus 142 ~~~~~~~~~~~~~~i~~~~~~~~L~~~-~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~~y 220 (233)
T PRK14841 142 ESILKDVSQGKKIELTEETFRQYLYLP-DVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESY 220 (233)
T ss_pred HHHHHHHHcCCcCCCCHHHHHHHhccC-CCCCCCEEEeCCCCccccCcHHHHhhceeEEECCCCCCcCCHHHHHHHHHHH
Confidence 9998652 234555788889864 889999999999999999999999999999999997 999999999999999
Q ss_pred hhhhhccCCCC
Q psy4416 279 SKCEQRYGKPT 289 (290)
Q Consensus 279 s~~~~R~Gk~~ 289 (290)
++|+||||+.+
T Consensus 221 ~~r~rrfG~~~ 231 (233)
T PRK14841 221 SKRERRFGGLI 231 (233)
T ss_pred HhcCccCCCCC
Confidence 99999999874
No 10
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.3e-52 Score=376.19 Aligned_cols=214 Identities=17% Similarity=0.264 Sum_probs=172.3
Q ss_pred hhHhhhcCCCCCcEEEEEEeCCc-------------------ccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hH
Q psy4416 53 LFLTLINNWKKPNHLVLIIGEDV-------------------ILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LL 111 (290)
Q Consensus 53 ~~~~v~~~~kiP~HlAvImdgn~-------------------~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll 111 (290)
.+...++.+++|+|||||||||. .|++++.+++.||.++||++||+|+|| +||||++ ++
T Consensus 8 ~~~~~~~~~~~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV 87 (250)
T PRK14840 8 AQENFPSLQSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEV 87 (250)
T ss_pred hhhhhcccCCCCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHH
Confidence 34445677899999999999991 388999999999999999999999999 7999998 56
Q ss_pred hhhccchhhHHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEE
Q psy4416 112 SAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNIL 191 (290)
Q Consensus 112 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnll 191 (290)
+.|+ +++.+. +.. ..+....+..++.+.|+.. ++|++....++..++.| +++++++||+|
T Consensus 88 ~~Lm--~L~~~~--l~~-----~~~~~~~~~irvr~iGd~~----------~Lp~~l~~~i~~~e~~T-~~~~~~~Lnla 147 (250)
T PRK14840 88 AELF--SLFNSQ--LDS-----QLPYLHENEIRLRCIGDLS----------KLPQELQNNIEQASSAT-AHYSRMELVLA 147 (250)
T ss_pred HHHH--HHHHHH--HHH-----HHHHHHHCCCEEEEEeChh----------hCCHHHHHHHHHHHHHh-ccCCceEEEEE
Confidence 6666 555432 220 0111122344555666432 34555567777777766 78999999999
Q ss_pred eCCCcHHHHHHHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-
Q psy4416 192 SRKQCESDLLNSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY- 263 (290)
Q Consensus 192 s~ydGr~eIv~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~- 263 (290)
++||||+||++|+++++++. ++++++ .+++.|+. .+.|||||+|||||+.|||||||||++||||||++++
T Consensus 148 ~~Yggr~EI~~A~~~~~~~v~~~~~~~~~i~~~~i~~~L~~-~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lW 226 (250)
T PRK14840 148 INYGGKDELVRAFKKLHQDLANKKISSDDISEELISSYLDT-SGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLW 226 (250)
T ss_pred ecCCcHHHHHHHHHHHHHHHHhCCCChhhCCHHHHHHHhcc-CCCCCCCEEEeCCCCcccccchHHhHhceeEEECCCCC
Confidence 99999999999999998762 444443 67788876 4899999999999999999999999999999999997
Q ss_pred CCCCHHHHHHHHHHHhhhhhccCC
Q psy4416 264 YDISASKFKNILRKYSKCEQRYGK 287 (290)
Q Consensus 264 p~~~~~~f~~aL~~Ys~~~~R~Gk 287 (290)
|||++.+|.+||.+|++|+|||||
T Consensus 227 Pdf~~~df~~al~~y~~R~RrfG~ 250 (250)
T PRK14840 227 PDFTPNDLLEAIKTYQQRSRRGGK 250 (250)
T ss_pred CcCCHHHHHHHHHHHhcccCcCCC
Confidence 999999999999999999999997
No 11
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.9e-52 Score=370.54 Aligned_cols=207 Identities=14% Similarity=0.239 Sum_probs=168.8
Q ss_pred CCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHHh
Q psy4416 61 WKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEEF 123 (290)
Q Consensus 61 ~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~~ 123 (290)
+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ .++...
T Consensus 2 ~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm--~L~~~~ 79 (233)
T PRK14833 2 DNTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM--KLLKKY 79 (233)
T ss_pred CCCCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHH--HHHHHH
Confidence 57999999999999 3799999999999999999999999999 7999998 566666 555432
Q ss_pred hhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHH
Q psy4416 124 NKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNS 203 (290)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a 203 (290)
+.. ..+....+..++.+.|+.. ++|++....++.+|+.| +++++++||+|.+||||+||++|
T Consensus 80 --l~~-----~~~~~~~~~irvr~iG~~~----------~Lp~~~~~~i~~~e~~T-~~~~~~~Lnia~~Y~gr~EI~~A 141 (233)
T PRK14833 80 --LKD-----ERSTYLENNIRFKAIGDLE----------GFSKELRDTILQLEEDT-RSFKGFTQVLALNYGSKDEISRA 141 (233)
T ss_pred --HHH-----HHHHHHhCCcEEEEEeChh----------hCCHHHHHHHHHHHHHc-cCCCceEEEEEecCCCHHHHHHH
Confidence 220 0111122344555556432 35555567777777776 78899999999999999999999
Q ss_pred HHHHHhcc------CCcchHHHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHHH
Q psy4416 204 IVELGETN------LSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNILR 276 (290)
Q Consensus 204 ~r~l~~~~------~~~~di~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL~ 276 (290)
+++++++. ...++..+++.|+.. +.||||||||||||.|||||||||++||||||++.+ |||++.||.+||.
T Consensus 142 ~~~~~~~~~~~~~~~~i~e~~l~~~L~~~-~~p~pDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~ 220 (233)
T PRK14833 142 FKKLLESPPSHIGELESLEEEISNCLDTA-DLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIIS 220 (233)
T ss_pred HHHHHHHhhcccCcccCCHHHHHHHhccC-CCCCCCEEEECCCCccccccHHHHHhceeEEECCCCCCcCCHHHHHHHHH
Confidence 99998662 123444778888864 889999999999999999999999999999999997 9999999999999
Q ss_pred HHhhhhhccCCC
Q psy4416 277 KYSKCEQRYGKP 288 (290)
Q Consensus 277 ~Ys~~~~R~Gk~ 288 (290)
+|++|+||||+.
T Consensus 221 ~y~~r~rrfG~~ 232 (233)
T PRK14833 221 DFYKRVRKFGGL 232 (233)
T ss_pred HHHhhhhhccCC
Confidence 999999999985
No 12
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.3e-52 Score=371.35 Aligned_cols=208 Identities=15% Similarity=0.222 Sum_probs=168.4
Q ss_pred CCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHH
Q psy4416 60 NWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEE 122 (290)
Q Consensus 60 ~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~ 122 (290)
.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +++.+
T Consensus 5 ~~~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm--~L~~~ 82 (241)
T PRK14842 5 ESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIF--GLLVE 82 (241)
T ss_pred CCCCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH--HHHHH
Confidence 568999999999999 3799999999999999999999999999 7999998 666666 55543
Q ss_pred hhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHH
Q psy4416 123 FNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLN 202 (290)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~ 202 (290)
. +.. . ......+..++.+.|+.. ++|++....++..++.| +++++++||+|.+||||+||++
T Consensus 83 ~--l~~--~---~~~~~~~~irv~~iG~~~----------~Lp~~l~~~i~~~e~~T-~~~~~~~Lnia~~Yggr~EI~~ 144 (241)
T PRK14842 83 F--IET--R---LDTIHARGIRIHHSGSRK----------KLTRTVLDKIDFAMAKT-KKNKNLTVNFCLNYGSHDELLR 144 (241)
T ss_pred H--HHH--H---HHHHHHCCCEEEEEeChh----------hCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCHHHHHH
Confidence 2 220 0 001112334455556432 34555556667777666 7899999999999999999999
Q ss_pred HHHHHHhcc----CC----cchHHHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHH
Q psy4416 203 SIVELGETN----LS----VSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKN 273 (290)
Q Consensus 203 a~r~l~~~~----~~----~~di~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~ 273 (290)
|+++++++. .+ .++..+++.|+.. +.|||||+||||||.|||||||||++||||||++.+ |||++.||.+
T Consensus 145 A~~~~~~~~~~~~~~~~~~i~e~~~~~~L~t~-~~p~pDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF~~~dl~~ 223 (241)
T PRK14842 145 AAQEVFLARKAKKVTLEKPLKEKEFEKFLYTS-PLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVD 223 (241)
T ss_pred HHHHHHHHHHcCCCCccccCCHHHHHHHhCcC-CCCCCCEEEECCCcccccCCHHHHHhceEEEECCCCCccCCHHHHHH
Confidence 999998652 22 3344788888864 899999999999999999999999999999999996 9999999999
Q ss_pred HHHHHhhhhhccCCC
Q psy4416 274 ILRKYSKCEQRYGKP 288 (290)
Q Consensus 274 aL~~Ys~~~~R~Gk~ 288 (290)
||.+|++|+||||++
T Consensus 224 al~~y~~R~RrfG~~ 238 (241)
T PRK14842 224 SLKWYETRTRKFGGL 238 (241)
T ss_pred HHHHHhccccccCCc
Confidence 999999999999985
No 13
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.9e-52 Score=371.51 Aligned_cols=207 Identities=17% Similarity=0.281 Sum_probs=169.8
Q ss_pred cCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhH
Q psy4416 59 NNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFE 121 (290)
Q Consensus 59 ~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~ 121 (290)
+.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +++.
T Consensus 6 ~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm--~l~~ 83 (242)
T PRK14838 6 DMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALM--SLLL 83 (242)
T ss_pred cCCCCCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHH--HHHH
Confidence 3468999999999999 3799999999999999999999999999 7999998 666666 5554
Q ss_pred HhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHH
Q psy4416 122 EFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLL 201 (290)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv 201 (290)
+. +.. ..+ ..+..++.+.|+.. ++|++....++..|+.| +++++++||+|.+||||+||+
T Consensus 84 ~~--l~~----~~~---~~~~irir~iG~~~----------~Lp~~l~~~i~~~e~~T-~~~~~~~lnia~~Yggr~EI~ 143 (242)
T PRK14838 84 DS--IEE----ETF---MKNNIRFRIIGDIA----------KLPEEVQERLNECEEHT-AKNTGMCLVLALSYSSRWEIT 143 (242)
T ss_pred HH--HHH----HHH---HHcCcEEEEEeChh----------hCCHHHHHHHHHHHHHh-cCCCceEEEEeecCCCHHHHH
Confidence 32 321 001 12334555666542 34555556777777776 789999999999999999999
Q ss_pred HHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHH
Q psy4416 202 NSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKN 273 (290)
Q Consensus 202 ~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~ 273 (290)
+|+++++++. ++++++ .+++.|+.. ..||||||||||||.|||||||||++||||||++.+ |||++.||.+
T Consensus 144 ~A~~~~~~~~~~g~~~~~~i~e~~~~~~L~~~-~~pd~DLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~ 222 (242)
T PRK14838 144 EATRQIATLVQNGELNPEEITEESISEHLTTN-FMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCK 222 (242)
T ss_pred HHHHHHHHHHHhCCCChhhCCHHHHHHHhccC-CCCCCCEEEeCCCCccccCchHHHhcceeEEeCCCCCccCCHHHHHH
Confidence 9999998652 344433 677888864 899999999999999999999999999999999997 9999999999
Q ss_pred HHHHHhhhhhccCCC
Q psy4416 274 ILRKYSKCEQRYGKP 288 (290)
Q Consensus 274 aL~~Ys~~~~R~Gk~ 288 (290)
||.+|++|+||||+.
T Consensus 223 ai~~y~~r~RrfG~~ 237 (242)
T PRK14838 223 AIYDYQKRERRFGKT 237 (242)
T ss_pred HHHHHHhccccCCCc
Confidence 999999999999985
No 14
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=100.00 E-value=1.1e-51 Score=365.59 Aligned_cols=201 Identities=17% Similarity=0.304 Sum_probs=164.1
Q ss_pred cEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHHhhhhc
Q psy4416 65 NHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEEFNKLT 127 (290)
Q Consensus 65 ~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~~~~l~ 127 (290)
+||||||||| ..|++.+.+++.||.++||++||+|+|| +||||++ +++.|+ +++.+. +.
T Consensus 1 ~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm--~L~~~~--l~ 76 (226)
T TIGR00055 1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLM--ELFEKK--LD 76 (226)
T ss_pred CcEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHH--HHHHHH--HH
Confidence 6999999999 3799999999999999999999999999 7999998 666666 555432 22
Q ss_pred cccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHHHHHH
Q psy4416 128 LGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVEL 207 (290)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a~r~l 207 (290)
. . .+....+..++.+.|+.. ++|++....++..++.| ++|++++||+|.+||||+||++|+|++
T Consensus 77 ~--~---~~~~~~~~irvr~iGd~~----------~Lp~~~~~~i~~~e~~T-~~n~~~~lnia~~Yggr~EI~~A~~~~ 140 (226)
T TIGR00055 77 R--E---VKELHRYNVRIRIIGDLS----------LLSKELQEKIKKAEEDT-KNNTDFTLNIAFNYGGRNEILHAVKQI 140 (226)
T ss_pred H--H---HHHHHHCCCEEEEEeChh----------hCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 0 0 111112344555556542 34555556677777666 789999999999999999999999999
Q ss_pred Hhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHHHHHh
Q psy4416 208 GETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNILRKYS 279 (290)
Q Consensus 208 ~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL~~Ys 279 (290)
+++. ++++++ .+++.|+.. +.|||||+||||||.|||||||||++||||||++.+ |||++++|.+||.+||
T Consensus 141 ~~~~~~g~~~~~~i~e~~~~~~L~t~-~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF~~~~l~~al~~y~ 219 (226)
T TIGR00055 141 AEKVKSGKLLPEDIDEETLNKHLYTA-NLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQ 219 (226)
T ss_pred HHHHHhCCCChhhCCHHHHHHhhccC-CCCCCCEEEeCCCcccccCcHHHHHhceEEEECCCCCCcCCHHHHHHHHHHHh
Confidence 8762 344443 778888864 899999999999999999999999999999999997 9999999999999999
Q ss_pred hhhhccC
Q psy4416 280 KCEQRYG 286 (290)
Q Consensus 280 ~~~~R~G 286 (290)
+|+||||
T Consensus 220 ~R~RRfG 226 (226)
T TIGR00055 220 FRHRRFG 226 (226)
T ss_pred ccCccCC
Confidence 9999999
No 15
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.4e-51 Score=369.43 Aligned_cols=205 Identities=19% Similarity=0.308 Sum_probs=167.4
Q ss_pred cCCCCCcEEEEEEeCC----------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhh
Q psy4416 59 NNWKKPNHLVLIIGED----------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLF 120 (290)
Q Consensus 59 ~~~kiP~HlAvImdgn----------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~ 120 (290)
+.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||+|+. +++.|+ .++
T Consensus 22 ~~~~~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm--~L~ 99 (256)
T PRK14828 22 DGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLL--DII 99 (256)
T ss_pred ccCCCCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHH--HHH
Confidence 4578999999999999 1689999999999999999999999999 7999998 666666 555
Q ss_pred HHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHH
Q psy4416 121 EEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDL 200 (290)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eI 200 (290)
.+. +. ... ..+..++.+.|+.. ++|++....++..|+.| +++++++||+|++||||+||
T Consensus 100 ~~~--l~------~~~--~~~~irv~~iG~~~----------~lp~~~~~~~~~~e~~T-~~~~~~~Lnia~~Yggr~EI 158 (256)
T PRK14828 100 EDV--VR------QLA--PDGRWRVRHVGSLD----------LLPAPSANRLKEAEEAT-VGNDGIKVNVAVGYGGRQEI 158 (256)
T ss_pred HHH--HH------HHH--HhCCeEEEEECChh----------hCCHHHHHHHHHHHHhh-cCCCCcEEEEEecCCCHHHH
Confidence 532 32 100 12333555556432 35556556777777666 78999999999999999999
Q ss_pred HHHHHHHHhcc----CCcc-------hHHHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCH
Q psy4416 201 LNSIVELGETN----LSVS-------DTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISA 268 (290)
Q Consensus 201 v~a~r~l~~~~----~~~~-------di~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~ 268 (290)
++|+++++++. ++++ +..+++.|+.. +.|||||+||||||.|||||||||++||||||++++ |||++
T Consensus 159 ~~A~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~L~~~-~~P~pDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~ 237 (256)
T PRK14828 159 VDAVRSLLTEHKDKGTSIDELAESVTVDAISTHLYTG-GQPDPDLVIRTSGEQRLSGFMLWQSAHSEYYFCETYWPAFRK 237 (256)
T ss_pred HHHHHHHHHHHHhCCCChhhccccCCHHHHHHHhccC-CCCCCCEEEeCCCCCcccCChHHHhhheEEEeCCCCCccCCH
Confidence 99999998652 3332 23677888763 789999999999999999999999999999999997 99999
Q ss_pred HHHHHHHHHHhhhhhccCC
Q psy4416 269 SKFKNILRKYSKCEQRYGK 287 (290)
Q Consensus 269 ~~f~~aL~~Ys~~~~R~Gk 287 (290)
.||.+||.+|++|+|||||
T Consensus 238 ~dl~~al~~y~~r~RRfG~ 256 (256)
T PRK14828 238 VDFLRALRDYSQRERRFGK 256 (256)
T ss_pred HHHHHHHHHHHhhhccCCC
Confidence 9999999999999999997
No 16
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5.3e-51 Score=370.66 Aligned_cols=210 Identities=19% Similarity=0.312 Sum_probs=167.6
Q ss_pred cCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhH
Q psy4416 59 NNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFE 121 (290)
Q Consensus 59 ~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~ 121 (290)
+.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||+|+. +++.|+ .++.
T Consensus 37 ~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm--~L~~ 114 (275)
T PRK14835 37 KHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLM--NLFE 114 (275)
T ss_pred ccCCCCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHH--HHHH
Confidence 3578999999999999 2699999999999999999999999999 7999998 666666 5554
Q ss_pred HhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHH
Q psy4416 122 EFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLL 201 (290)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv 201 (290)
+. +.. .........+..++.+.|+.. ++|++....++..++.| +++++++||+|.+||||+||+
T Consensus 115 ~~--l~~---~~~~~~~~~~~irir~iGd~~----------~Lp~~l~~~i~~~e~~T-~~~~~~~Lnia~~Yggr~EI~ 178 (275)
T PRK14835 115 RE--ARR---MAVDPRIHANRVRVRAIGRHD----------GFPPKVLEALEELEERT-EGHEGMLLNIAVGYGGREEIV 178 (275)
T ss_pred HH--HHH---HhchhhhhhCCeEEEEecChh----------hCCHHHHHHHHHHHHHh-cCCCCeEEEEEeccCCHHHHH
Confidence 32 220 000001112344555556432 35555556777777666 789999999999999999999
Q ss_pred HHHHHHHhcc----CCcchH-------HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHH
Q psy4416 202 NSIVELGETN----LSVSDT-------IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISAS 269 (290)
Q Consensus 202 ~a~r~l~~~~----~~~~di-------~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~ 269 (290)
+|+++++++. ++++++ .+++.|+.. +.||||||||||||.|||||||||++||||||++.+ |||++.
T Consensus 179 ~A~k~i~~~~~~g~~~~~~i~~~~~e~~i~~~L~~~-~~p~pDLLIRTsGE~RLSnFLLWQsayaElyF~d~lWPdF~~~ 257 (275)
T PRK14835 179 DAVKSLLLEAAATGKSPEEVAAELTPEHISAHLYTA-GVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKV 257 (275)
T ss_pred HHHHHHHHHHHcCCCChHHhcccCCHHHHHHHhccC-CCCCCCEEEecCCCccccCCHHHhhhheEEEeCCCCCCcCCHH
Confidence 9999998652 344332 466777753 889999999999999999999999999999999997 999999
Q ss_pred HHHHHHHHHhhhhhccCC
Q psy4416 270 KFKNILRKYSKCEQRYGK 287 (290)
Q Consensus 270 ~f~~aL~~Ys~~~~R~Gk 287 (290)
||.+||.+||+|+||||+
T Consensus 258 d~~~ai~~yq~r~rRfG~ 275 (275)
T PRK14835 258 DFLRALRDYQGRERRFGR 275 (275)
T ss_pred HHHHHHHHHHhhcccCCC
Confidence 999999999999999996
No 17
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=9.7e-51 Score=360.83 Aligned_cols=206 Identities=14% Similarity=0.175 Sum_probs=165.9
Q ss_pred CCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHHh
Q psy4416 61 WKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEEF 123 (290)
Q Consensus 61 ~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~~ 123 (290)
.+-|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +++.+.
T Consensus 7 ~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm--~L~~~~ 84 (239)
T PRK14839 7 RRSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLM--RLLRAY 84 (239)
T ss_pred CCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHH--HHHHHH
Confidence 45799999999999 3799999999999999999999999999 7999998 566666 555432
Q ss_pred hhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHH
Q psy4416 124 NKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNS 203 (290)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a 203 (290)
+.. .......+..++.+.|+.. ++|++....++..|+.| ++|++++||+|.+||||+||++|
T Consensus 85 --l~~-----~~~~~~~~~irvr~iGd~~----------~Lp~~l~~~i~~~e~~T-~~n~~~~Lnia~~Yggr~EI~~A 146 (239)
T PRK14839 85 --LRN-----ETERLARNGVRLTVIGRRD----------RLPDGIPEAIARAEAAT-AGGDRLHLRIAVDYSARDAILAA 146 (239)
T ss_pred --HHH-----HHHHHHHCCCEEEEEeChh----------hCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCHHHHHHH
Confidence 210 0111122344555666542 34555557777777776 78999999999999999999999
Q ss_pred HHHHHhccCCcchHHHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHHHHHhhhh
Q psy4416 204 IVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNILRKYSKCE 282 (290)
Q Consensus 204 ~r~l~~~~~~~~di~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL~~Ys~~~ 282 (290)
++++++. ...++..+++.|+ .+.||||||||||||.|||||||||++||||||++.+ |||++.||.+||.+||+|+
T Consensus 147 ~k~~~~~-~~i~e~~~~~~l~--~~~p~~DLlIRTsGE~RLSnFLlWQ~ayael~F~d~lWPdF~~~d~~~ai~~yq~R~ 223 (239)
T PRK14839 147 AAKALGP-EGLSREAFSDLLT--GDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHGRE 223 (239)
T ss_pred HHHhcCc-ccCCHHHHHHHhc--cCCCCCCEEEeCCCccccccchhhhhhheEEEEccCCCccCCHHHHHHHHHHHhccc
Confidence 9998632 1233446677776 3889999999999999999999999999999999997 9999999999999999999
Q ss_pred hccCCCC
Q psy4416 283 QRYGKPT 289 (290)
Q Consensus 283 ~R~Gk~~ 289 (290)
||||+..
T Consensus 224 RrfG~~~ 230 (239)
T PRK14839 224 RRFGGLP 230 (239)
T ss_pred cccCCCC
Confidence 9999864
No 18
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=100.00 E-value=1.6e-50 Score=362.10 Aligned_cols=206 Identities=20% Similarity=0.375 Sum_probs=165.9
Q ss_pred CCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHHhh
Q psy4416 62 KKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEEFN 124 (290)
Q Consensus 62 kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~~~ 124 (290)
.+|+|||+||||| ..|.+.+.+++.||.++||++||+|+|| +||+|+. +++.|+ .++...
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm--~l~~~~- 91 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLM--ELFEKA- 91 (245)
T ss_pred ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHH--HHHHHH-
Confidence 6899999999999 2799999999999999999999999999 6899998 556655 444321
Q ss_pred hhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHHH
Q psy4416 125 KLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSI 204 (290)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a~ 204 (290)
+-. . ......+..++.+.|... .++.++...++..++.| ++++++++|+|++||||+||++|+
T Consensus 92 -l~~--~---~~~l~~~~v~v~~iG~~~----------~l~~~~~~~i~~~e~~t-~~~~~~~l~~a~nYGGR~eI~~av 154 (245)
T COG0020 92 -LRE--E---LKKLHKNGVRIRIIGDLS----------RLPEEVREAIEKAEEKT-KNNTGLTLNIAVNYGGRDEIVDAV 154 (245)
T ss_pred -HHH--H---HHHHhhcCeEEEEEeccc----------cCCHHHHHHHHHHHHhc-cCCCceEEEEeeCCCCHHHHHHHH
Confidence 110 0 011112333455455432 23334445555666665 789999999999999999999999
Q ss_pred HHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHHH
Q psy4416 205 VELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNILR 276 (290)
Q Consensus 205 r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL~ 276 (290)
|++++++ ++++++ .++++|++ .+.|||||+|||||+.|||||||||++|||+||+|.+ |||++.||.+||+
T Consensus 155 r~ia~~v~~g~l~~~~I~e~~i~~~L~~-~~~pdpDLlIRTsGe~RlSnFllWQ~aYsElyF~d~lWPdf~~~d~~~ai~ 233 (245)
T COG0020 155 RKIAEDVAAGKLSPEDIDEELISSHLYT-SGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRREDLLRAIR 233 (245)
T ss_pred HHHHHHHHcCCCChHHcCHHHHHHhhcc-cCCCCCCEEEeCCCcccccccHHHHHHhCeEEeccccCCCCCHHHHHHHHH
Confidence 9999874 556554 78899988 4999999999999999999999999999999999997 9999999999999
Q ss_pred HHhhhhhccCCC
Q psy4416 277 KYSKCEQRYGKP 288 (290)
Q Consensus 277 ~Ys~~~~R~Gk~ 288 (290)
+||+|+||||+.
T Consensus 234 ~yq~R~rrfG~~ 245 (245)
T COG0020 234 DYQKRERRFGRV 245 (245)
T ss_pred HHHhccccccCC
Confidence 999999999984
No 19
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=100.00 E-value=5.6e-49 Score=348.26 Aligned_cols=196 Identities=19% Similarity=0.308 Sum_probs=157.3
Q ss_pred CcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHHhhhh
Q psy4416 64 PNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEEFNKL 126 (290)
Q Consensus 64 P~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~~~~l 126 (290)
|+||||||||| ..|++.+.+++.||.++||++||+|+|| +||||+. +++.|+ +++... +
T Consensus 1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm--~l~~~~--l 76 (221)
T cd00475 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLM--ELFRDV--L 76 (221)
T ss_pred CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHH--HHHHHH--H
Confidence 89999999999 3799999999999999999999999999 7999998 566666 555422 2
Q ss_pred ccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHHHHH
Q psy4416 127 TLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVE 206 (290)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a~r~ 206 (290)
.. ..+....+..++.+.|+.. ++|++....++..++.| +++++++||+|++||||+||++|+++
T Consensus 77 ~~-----~~~~~~~~~i~vr~iGd~~----------~Lp~~~~~~~~~~e~~T-~~~~~~~lni~~~Y~gr~eI~~a~~~ 140 (221)
T cd00475 77 RR-----ILKELEKLGVRIRIIGDLS----------LLPESLQKEIKKAEEAT-KNNTGFTLNVAFNYGGRQEIIHAVRE 140 (221)
T ss_pred HH-----HHHHHHHCCcEEEEEeChh----------hCCHHHHHHHHHHHHHh-ccCCCcEEEEEecCCCHHHHHHHHHH
Confidence 10 0111112344565666542 34555556677777666 78999999999999999999999999
Q ss_pred HHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHHHHH
Q psy4416 207 LGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNILRKY 278 (290)
Q Consensus 207 l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL~~Y 278 (290)
+++.. .+++|+ .+++.|+. .+.|||||+|||||+.|||||||||++||||||++.+ |||++.+|.+||.+|
T Consensus 141 ~~~~~~~~~~~~~~i~~~~~~~~L~~-~~~p~pDLlIRTsGe~RLSnFLlWQ~~yaEl~F~~~lWPdf~~~~~~~al~~y 219 (221)
T cd00475 141 IAEKVKAGKLTPEDIDESTLNKHLYT-HDSPDPDLLIRTSGEQRLSNFLLWQSAYSELYFSDVLWPDFTFWDFLRALLDY 219 (221)
T ss_pred HHHHHHcCCCChHhCCHHHHHHhhCc-CCCCCCCEEEecCCccccccchHhhHhheeEEECCCCCCcCCHHHHHHHHHHH
Confidence 98762 344443 67788885 3889999999999999999999999999999999997 999999999999999
Q ss_pred hh
Q psy4416 279 SK 280 (290)
Q Consensus 279 s~ 280 (290)
++
T Consensus 220 ~~ 221 (221)
T cd00475 220 QR 221 (221)
T ss_pred hC
Confidence 74
No 20
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.2e-47 Score=339.31 Aligned_cols=194 Identities=16% Similarity=0.243 Sum_probs=155.7
Q ss_pred cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHHhhhhccccccccccccCCCCceEEEecCCC
Q psy4416 75 VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKT 152 (290)
Q Consensus 75 ~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (290)
..|++++.+++.||.++||++||+|+|| +||+|+. +++.|+ +++.+. +.. ..+....+..++.+.|+..
T Consensus 20 ~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm--~l~~~~--l~~-----~~~~~~~~~i~vr~iG~~~ 90 (229)
T PRK10240 20 KAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALM--ELFVWA--LDS-----EVKSLHRHNVRLRIIGDTS 90 (229)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHH--HHHHHH--HHH-----HHHHHHHCCcEEEEEeChh
Confidence 4899999999999999999999999999 7999998 566666 555432 220 0011112334555556432
Q ss_pred CCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHhcc----CCcchH---HHHHHhhh
Q psy4416 153 SKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETN----LSVSDT---IMKERLQE 225 (290)
Q Consensus 153 ~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a~r~l~~~~----~~~~di---~i~~~L~~ 225 (290)
++|++....++..++.| +++++++||+|++||||+||++|++++++.. ++++|+ .+++.|+.
T Consensus 91 ----------~Lp~~l~~~i~~~e~~T-~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~g~~~~~~i~e~~i~~~L~t 159 (229)
T PRK10240 91 ----------RFNSRLQERIRKSEALT-AGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICM 159 (229)
T ss_pred ----------hCCHHHHHHHHHHHHHh-cCCCCeEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChhhCCHHHHHHHhcc
Confidence 34555556677777766 7899999999999999999999999998662 444444 67888876
Q ss_pred cCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHHHHHhhhhhccCCCC
Q psy4416 226 KCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNILRKYSKCEQRYGKPT 289 (290)
Q Consensus 226 ~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL~~Ys~~~~R~Gk~~ 289 (290)
. +.|||||+|||||+.|||||||||++||||||++.+ |+|++.+|.+||.+|++|+||||+..
T Consensus 160 ~-~~pdpDLlIRTsGe~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~al~~y~~r~rrfG~~~ 223 (229)
T PRK10240 160 H-ELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTE 223 (229)
T ss_pred C-CCCCCCEEEeCCCcccccCChHHHHhheEEEECCCCCCcCCHHHHHHHHHHHHccCccCCCCC
Confidence 4 889999999999999999999999999999999997 99999999999999999999999863
No 21
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=100.00 E-value=9.1e-47 Score=346.26 Aligned_cols=211 Identities=17% Similarity=0.242 Sum_probs=162.6
Q ss_pred hhHhhhcCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhc
Q psy4416 53 LFLTLINNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIK 115 (290)
Q Consensus 53 ~~~~v~~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~ 115 (290)
+...+++.+++|+||||||||| ..|++.+.+++.||.++||++||+|+|| +||||+. +++.|+
T Consensus 9 ~~~~~l~~g~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm 88 (322)
T PTZ00349 9 FITSLLRDFINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLF 88 (322)
T ss_pred HHHHHhhcCCCCCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHH
Confidence 3445577899999999999999 3799999999999999999999999999 7999998 566666
Q ss_pred cchhhHHhhhhcccc-ccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCC
Q psy4416 116 NNPLFEEFNKLTLGF-SFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRK 194 (290)
Q Consensus 116 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~y 194 (290)
.++.+. +.... ....+ ..+..++.+.|+.. +++++....++..++.| ++|++++||+|.+|
T Consensus 89 --~L~~~~--l~~~~~~~~~l---~~~~irirviGd~~----------~Lp~~l~~~i~~~e~~T-~~n~~~~Lnia~~Y 150 (322)
T PTZ00349 89 --YLNLLI--LINEDFFFKFI---KDNKIKIKIIGNLS----------YINDAYRKIIHDIEEKT-ENFDNILLNIFFSY 150 (322)
T ss_pred --HHHHHH--HHHhhhhHHHH---HHCCCEEEEEeChh----------hCCHHHHHHHHHHHHHh-CCCCCcEEEEEecC
Confidence 444321 11000 00011 12344555556532 34555667777777776 78999999999999
Q ss_pred CcHHHHH----------HHHHHHHhcc-----------------CC----------------------------------
Q psy4416 195 QCESDLL----------NSIVELGETN-----------------LS---------------------------------- 213 (290)
Q Consensus 195 dGr~eIv----------~a~r~l~~~~-----------------~~---------------------------------- 213 (290)
|||+||+ +|+++++++. ++
T Consensus 151 ggR~EI~~~v~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (322)
T PTZ00349 151 TSRNEMSLCKFNPNLYFDTYKNLLEEKKILCGSNILTDPIKEGTFAIPDDEDECDYLDHELENERIDLDLKFDGDCICGE 230 (322)
T ss_pred CCHHHHHHhhcccchHHHHHHHHHHHhccccccccccccccccccccchhcccccccccccccccccccccccccccccc
Confidence 9999999 7999987541 11
Q ss_pred ---cchH-----HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhh-cceeEEEcCCC-CCCCHHHHHHHHHHHhhhh
Q psy4416 214 ---VSDT-----IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNI-RLTEFFQFDNY-YDISASKFKNILRKYSKCE 282 (290)
Q Consensus 214 ---~~di-----~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqi-r~TEi~~~~~~-p~~~~~~f~~aL~~Ys~~~ 282 (290)
.++. .+.+.|+. ++.||||||||||||.||||||+||+ +||||||++.+ |||+..+|.+||.+||..+
T Consensus 231 ~~~i~e~~i~~~~~~~~Lyt-~~~PdpDLlIRTSGE~RLSNFLLWQ~aaysElyF~d~lWPdF~~~d~~~ai~~yq~~~ 308 (322)
T PTZ00349 231 KSFLNEEQIEIVNYHKKLLT-SDLPPPNILIRTSGEKRLSDFMLYQISEFTEIYFINEYWPIFNFLQFIYIILHYTIFQ 308 (322)
T ss_pred cccCChhhccHHHHHHhccC-CCCCCCCEEEECCCcccccccHHhhcccceEEEECCCCCCCCCHHHHHHHHHHHhhhh
Confidence 0111 36677776 48999999999999999999999999 69999999996 9999999999999998754
No 22
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=100.00 E-value=4.7e-47 Score=338.02 Aligned_cols=198 Identities=22% Similarity=0.370 Sum_probs=142.7
Q ss_pred EEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHHhhhhcccccc
Q psy4416 70 IIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEEFNKLTLGFSF 132 (290)
Q Consensus 70 Imdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~~~~l~~~~~~ 132 (290)
||||| ..|++++.+++.||.++||++||+|+|| +||+|+. +++.|+ +++.+. +.. ..
T Consensus 1 ImDGNrRwA~~~g~~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm--~l~~~~--l~~--~~ 74 (223)
T PF01255_consen 1 IMDGNRRWAKKRGLPRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALM--DLFERY--LRE--LI 74 (223)
T ss_dssp EE--HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHH--HHHHHH--HHH--HH
T ss_pred CCcCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHH--HHHHHH--HHH--Hh
Confidence 79999 3799999999999999999999999999 7999998 555666 554432 210 00
Q ss_pred ccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHhc--
Q psy4416 133 NKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGET-- 210 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a~r~l~~~-- 210 (290)
..... ..+..++.+.|+.. ++|++....++..|+.| +++++++||+|++||||+||++|++++++.
T Consensus 75 ~~~~~-~~~~irvr~iGd~~----------~Lp~~~~~~i~~~e~~T-~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~~ 142 (223)
T PF01255_consen 75 DELNF-HKNGIRVRVIGDLS----------LLPEELQKAIAEAEEKT-KNNTGLTLNIAINYGGRDEIVDAARKLAEEVQ 142 (223)
T ss_dssp HHHH---HTTEEEEEES-GG----------GS-HHHHHHHHHHHHHH-TTSSSEEEEEEECE-HHHHHHHHHHHHHHHHH
T ss_pred hhcch-hhcCeeEEEEeccC----------cCCHHHHHHHHHHHHhh-ccCcceeEEEEecCCcHHHHHHHHHHhhhhhc
Confidence 00000 12344565556432 34555556677776666 688999999999999999999999999975
Q ss_pred --cCCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHHHHHhhhhhc
Q psy4416 211 --NLSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNILRKYSKCEQR 284 (290)
Q Consensus 211 --~~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL~~Ys~~~~R 284 (290)
.++++|+ .+++.|+.. +.| |||+|||||+.|||||||||++||||||++.+ |+|++.||.+||.+||+|+||
T Consensus 143 ~~~~~~~~i~~~~i~~~L~~~-~~P-pDLlIRtsGe~RLS~FllWq~~y~El~f~~~~WPdf~~~d~~~al~~y~~r~rr 220 (223)
T PF01255_consen 143 SGKLSPEDIDEELISSHLYTP-DLP-PDLLIRTSGEQRLSNFLLWQSAYAELYFTDTLWPDFSFWDFLRALLEYQRRERR 220 (223)
T ss_dssp TTSSGGGG-SHHHHHHTSTTT-TS---SEEEEETT--C-TTSSTTTTTT-EEEEESSSGGG--HHHHHHHHHHHHHCHHH
T ss_pred cCccccccCCHHHHHhhcccc-CCC-CCEEEEeCCCcccCCCeEEeecCcEEEECCCCCccCCHHHHHHHHHHHHhhhcc
Confidence 2455554 778888864 667 99999999999999999999999999999996 999999999999999999999
Q ss_pred cCC
Q psy4416 285 YGK 287 (290)
Q Consensus 285 ~Gk 287 (290)
|||
T Consensus 221 fGk 223 (223)
T PF01255_consen 221 FGK 223 (223)
T ss_dssp TT-
T ss_pred CCC
Confidence 998
No 23
>KOG1602|consensus
Probab=100.00 E-value=1e-44 Score=319.94 Aligned_cols=215 Identities=16% Similarity=0.200 Sum_probs=174.0
Q ss_pred hhcCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchh
Q psy4416 57 LINNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPL 119 (290)
Q Consensus 57 v~~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~ 119 (290)
.+..+++|+|||+||||| ++|..++.++++||.++||++||+|+|| +||||+. +++.|| .+
T Consensus 30 ~~~~g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM--~L 107 (271)
T KOG1602|consen 30 LLARGPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLM--DL 107 (271)
T ss_pred HHhcCCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHH--HH
Confidence 455689999999999999 4899999999999999999999999999 8999998 677777 66
Q ss_pred hHHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHH
Q psy4416 120 FEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESD 199 (290)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~e 199 (290)
+.++ +..-...+ ......++++.+.|+.. .++++.......+++.| ++|++.+|++|++|.||.|
T Consensus 108 ~~~k--~~~~~~~~--~~~~~~gvririiGdls----------lL~~~l~k~i~~ieE~T-knn~~~~L~vcf~Ytsr~E 172 (271)
T KOG1602|consen 108 ALEK--IERLLEQG--EKLDKYGVRIRVIGDLS----------LLPESLRKAIKKIEEAT-KNNTRLILNVCFAYTSRDE 172 (271)
T ss_pred HHHH--HHHHHHHh--hhhhhcCeEEEEEcchh----------hCCHHHHHHHHHHHHHh-hcCCceEEEEEeccCcHHH
Confidence 6543 32100111 11123455666666542 23445556777777776 7999999999999999999
Q ss_pred HHHHHHHHHhcc---CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHH
Q psy4416 200 LLNSIVELGETN---LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFK 272 (290)
Q Consensus 200 Iv~a~r~l~~~~---~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~ 272 (290)
|++|+|.++... ....|+ .+++.|+.. ..|.|||+|||||+.||||||+||+.+||++|.|.+ |+|+++.|.
T Consensus 173 I~~a~r~~~~~~~~g~~~~~i~~~~~e~~l~~~-~~p~pDLlIRTSGe~RLSnFllWQ~s~t~l~f~~~LWPefg~~~l~ 251 (271)
T KOG1602|consen 173 ILHAVRGIVKRVKDGDIDVDINLSDIEECLYTS-DVPHPDLLIRTSGEDRLSNFLLWQTSETELFFADALWPEFGLWHLF 251 (271)
T ss_pred HHHHHHHHHHhhhcCCCccchhhHHHHHhhccC-CCCCCCEEEEcCCcchHHHHHHHHhcccEEeeccccCccccHHHHH
Confidence 999999998763 111133 677888865 779999999999999999999999999999999997 999999999
Q ss_pred HHHHHHhhhhhccCCCC
Q psy4416 273 NILRKYSKCEQRYGKPT 289 (290)
Q Consensus 273 ~aL~~Ys~~~~R~Gk~~ 289 (290)
.||.+||..++++||+.
T Consensus 252 ~aiLkfq~~~~~l~~~~ 268 (271)
T KOG1602|consen 252 WAILKFQRNQSYLGKRK 268 (271)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999999999864
No 24
>KOG2818|consensus
Probab=100.00 E-value=3.2e-34 Score=254.04 Aligned_cols=238 Identities=24% Similarity=0.307 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhccchhhhhhhhccccch---hhhHhhhcCCCCCcEEEEEEeCCcc---cHHHHH
Q psy4416 9 KFLSLLAFCYYFLTSNIWTSLIYILNPLKLNKNLHNEIVNNKS---TLFLTLINNWKKPNHLVLIIGEDVI---LYNDIT 82 (290)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~---~~~~~v~~~~kiP~HlAvImdgn~~---g~~~l~ 82 (290)
.+..+.+.+++.... .|+...+++++++.. +.+.++... -++.|+..++|.|+|+|+|+-.++. .+.++.
T Consensus 11 ~~~~~~l~~~~~~~~-a~~~~~~~~~~~~~l---~~s~~~~~a~~r~~r~d~~~L~k~p~hl~lvI~~v~~~~~~~~da~ 86 (263)
T KOG2818|consen 11 RASLLLLVKFQRCLG-AFRRLWLFLIRTKNL---ELSKAALHAAQRLFRTDFSSLKKGPKHLALVIHPVEDGEGSFSDAS 86 (263)
T ss_pred hHHHHHHHHHHhhHh-HHHHHHHHHHHhhhH---HHHHHHHHHHHHHhhcchhhhhhcchhheEEEEecccCCceehhhH
Confidence 333344444444332 334444444444433 444443221 4889999999999999988877654 789999
Q ss_pred HHHHHHHHhCCCEEEEEecCCCCCchhhHhhhccchhhHHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccc
Q psy4416 83 QIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHK 162 (290)
Q Consensus 83 ~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 162 (290)
+++.||+..||+++++||..|.++|+. +.++ ..+... ++. +++ .+.+++. ....+.|.
T Consensus 87 ~~v~w~v~~gik~~~lyd~~g~~~r~~--~~~~--~~I~s~--la~--~~g------~~~~~~~-----~~~~~snD--- 144 (263)
T KOG2818|consen 87 SIVFWAVTVGIKYLSLYDRVGIKKRNM--PVVR--DEIISH--LAN--YFG------LDEPTLA-----VTIKLSND--- 144 (263)
T ss_pred HHHHHHHHhccceeeHHHHHHHhccCc--HHHH--HHHHHh--hhh--hcC------CCCCccc-----ccCCCCCC---
Confidence 999999999999999999999999987 4444 222222 321 222 0111111 00111221
Q ss_pred cccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHhcc------CCcchH---HHHHHhhhcCCCCCCc
Q psy4416 163 YYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETN------LSVSDT---IMKERLQEKCPLPDPE 233 (290)
Q Consensus 163 ~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a~r~l~~~~------~~~~di---~i~~~L~~~~~~pePD 233 (290)
+ .+ +.++.++.+...+..|||..|++.++.+++.+ .+.+|+ .+++.|.+. +.||||
T Consensus 145 ----~---------~n-Q~~~~~L~~~~~s~~DGr~~i~Dl~r~i~~~~~~~~~~~~~~~itve~vds~l~e~-~~PePd 209 (263)
T KOG2818|consen 145 ----E---------PN-QEDKCKLGTHAISLEDGRMIIIDLTRLIQELCYLYELYRSETDITVETVDSELKEF-VEPEPD 209 (263)
T ss_pred ----C---------cc-cccccchhheecccccccHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHhc-CCCCcc
Confidence 0 11 24677899999999999999999999998763 344444 778888885 999999
Q ss_pred EEEEeCCCcccCCCcchhhcceeEEEcCCCCCCCHHHHHHHHHHHhhhhhccCC
Q psy4416 234 VAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGK 287 (290)
Q Consensus 234 LlIrtgg~~rLsgFlpWqir~TEi~~~~~~p~~~~~~f~~aL~~Ys~~~~R~Gk 287 (290)
|+|+||+...++||||||+|.|||++.|++-.+++++|.++|++||+|+||.||
T Consensus 210 Lll~fg~~~~l~GfpPWhiRltEf~~~p~~~~~~~e~f~~~lr~ya~ce~RvGk 263 (263)
T KOG2818|consen 210 LLLFFGPVLVLQGFPPWHIRLTEFTRKPSHLCTSYETFFRALRKYADCEQRVGK 263 (263)
T ss_pred eeeeeccchhhcCCCCceeEEEEeEeccccCcccHHHHHHHHHHHhhhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999997
No 25
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=52.80 E-value=5.4 Score=25.27 Aligned_cols=12 Identities=33% Similarity=0.919 Sum_probs=9.4
Q ss_pred HhhhhhccCCCC
Q psy4416 278 YSKCEQRYGKPT 289 (290)
Q Consensus 278 Ys~~~~R~Gk~~ 289 (290)
=+.|+|||||..
T Consensus 14 r~eckrrfgktl 25 (40)
T PF13043_consen 14 RAECKRRFGKTL 25 (40)
T ss_pred HHHHHHHhchhh
Confidence 357999999863
No 26
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.83 E-value=56 Score=30.32 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=41.9
Q ss_pred hhHhhhcCCCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhhc
Q psy4416 53 LFLTLINNWKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIK 115 (290)
Q Consensus 53 ~~~~v~~~~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l~ 115 (290)
++..+.+++..| +||+|+-|++ ....-+..-...|.+.||.. .++.+..+....++++.+.
T Consensus 16 ~~~~v~~lg~~P-~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~~~~el~~~I~ 77 (279)
T PRK14178 16 LKEEIIESGLYP-RLATVIVGDDPASQMYVRMKHRACERVGIGS-VGIELPGDATTRTVLERIR 77 (279)
T ss_pred HHHHHHHhCCCC-eEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHH
Confidence 445555556656 9999999986 44455777899999999985 4667776665554334443
No 27
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=41.97 E-value=25 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=23.7
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHHHH
Q psy4416 65 NHLVLIIGEDVILYNDITQIILWCMI 90 (290)
Q Consensus 65 ~HlAvImdgn~~g~~~l~~ll~Wc~~ 90 (290)
.|||.|.||.-.|+.++++++.|...
T Consensus 96 ahVAYiP~gkV~GlSKiaRiV~~~ar 121 (195)
T COG0302 96 AHVAYIPDGKVIGLSKIARIVDIFAR 121 (195)
T ss_pred EEEEEcCCCceecHHHHHHHHHHHhh
Confidence 49999999999999999999999764
No 28
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.95 E-value=90 Score=29.23 Aligned_cols=53 Identities=21% Similarity=0.098 Sum_probs=38.4
Q ss_pred CCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhhc
Q psy4416 61 WKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIK 115 (290)
Q Consensus 61 ~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l~ 115 (290)
+..| +||+|+-|++ ....-+..-...|.+.||+. .++.+..+..+.++++.+.
T Consensus 31 g~~P-~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~t~~el~~~I~ 84 (297)
T PRK14168 31 GKVP-GLVTILVGESPASLSYVTLKIKTAHRLGFHE-IQDNQSVDITEEELLALID 84 (297)
T ss_pred CCCC-eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHH
Confidence 3446 9999999985 44455777899999999995 6888877776655444443
No 29
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=38.92 E-value=30 Score=29.93 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.9
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHHHH
Q psy4416 65 NHLVLIIGEDVILYNDITQIILWCMI 90 (290)
Q Consensus 65 ~HlAvImdgn~~g~~~l~~ll~Wc~~ 90 (290)
-|||.|.+++-.|+.++.+++.|+..
T Consensus 82 ~hVaYiP~~~ViGLSKl~RiV~~~ar 107 (180)
T TIGR00063 82 AHVAYIPKDKVIGLSKIARIVEFFAR 107 (180)
T ss_pred EEEEEecCCceecHHHHHHHHHHHhc
Confidence 59999999989999999999999875
No 30
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=38.44 E-value=33 Score=29.96 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=23.6
Q ss_pred cEEEEEEe-CCcccHHHHHHHHHHHHH
Q psy4416 65 NHLVLIIG-EDVILYNDITQIILWCMI 90 (290)
Q Consensus 65 ~HlAvImd-gn~~g~~~l~~ll~Wc~~ 90 (290)
-|||.|.+ ++-.|+.++.+++.|+..
T Consensus 87 ~hIaYiP~~~~ViGLSKl~RiV~~~ar 113 (188)
T PLN03044 87 IHVGYIPNAGVILGLSKLARIAEVYAR 113 (188)
T ss_pred EEEEEECCCCccccHHHHHHHHHHHhc
Confidence 59999999 778999999999999875
No 31
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.17 E-value=1.2e+02 Score=28.24 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCCCcEEEEEEeCCcc-cHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhhc
Q psy4416 61 WKKPNHLVLIIGEDVI-LYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIK 115 (290)
Q Consensus 61 ~kiP~HlAvImdgn~~-g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l~ 115 (290)
+..| +||+|+-|++. ...-+..-...|.++||.. .++.+..+.....+++.+.
T Consensus 30 g~~P-~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~~l~~~I~ 83 (288)
T PRK14171 30 NASP-KLAIVLVGDNPASIIYVKNKIKNAHKIGIDT-LLVNLSTTIHTNDLISKIN 83 (288)
T ss_pred CCCC-eEEEEEeCCCccHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHH
Confidence 4446 79999999864 4444677899999999964 5888887766655434443
No 32
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=37.22 E-value=49 Score=28.07 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCcEEEEEEeCC--------------------cccHHHHHHHHHHHHHhCCCEEEE
Q psy4416 63 KPNHLVLIIGED--------------------VILYNDITQIILWCMIAGVSFVSV 98 (290)
Q Consensus 63 iP~HlAvImdgn--------------------~~g~~~l~~ll~Wc~~~GI~~lSl 98 (290)
-|.|++++.|+. +....++..+-.++.++||+.+..
T Consensus 50 ~p~~~vv~fD~~~~~fR~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~ 105 (169)
T PF02739_consen 50 KPDYVVVAFDSKGPTFRKELYPEYKANRKPMPEELIPQLPYIKELLEALGIPVLEV 105 (169)
T ss_dssp TEEEEEEEEEBSSCHHHHHCCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEecC
Confidence 489999999985 134555667788888999998765
No 33
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.37 E-value=1.2e+02 Score=28.25 Aligned_cols=55 Identities=5% Similarity=-0.077 Sum_probs=39.1
Q ss_pred hhHhhhcCCCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchh
Q psy4416 53 LFLTLINNWKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYN 109 (290)
Q Consensus 53 ~~~~v~~~~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ 109 (290)
++..+..++..| +||+|+-|++ ....-+..-...|.+.||..- .+.+..+....+
T Consensus 16 ~k~~v~~l~~~P-~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~t~~e 71 (287)
T PRK14181 16 IKENISASSTAP-GLAVVLIGNDPASEVYVGMKVKKATDLGMVSK-AHRLPSDATLSD 71 (287)
T ss_pred HHHHHHHhCCCC-cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHH
Confidence 445555555556 9999999985 455557788999999999864 567766655443
No 34
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.93 E-value=1.2e+02 Score=28.23 Aligned_cols=60 Identities=18% Similarity=0.000 Sum_probs=40.3
Q ss_pred hhHhhhcCCCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 53 LFLTLINNWKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 53 ~~~~v~~~~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
++..+..++..| +||+|+-|++ ....-+..-...|.+.||.. .++.++.+....++++.+
T Consensus 19 l~~~v~~l~~~P-~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~~~~el~~~I 79 (287)
T PRK14173 19 LRARLAKLPFVP-HLRVVRLGEDPASVSYVRLKDRQAKALGLRS-QVEVLPESTSQEELLELI 79 (287)
T ss_pred HHHHHHHhCCCC-cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 444444444456 7999999985 44455778899999999985 467777665444433333
No 35
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.70 E-value=1.2e+02 Score=28.27 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=38.1
Q ss_pred CCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhhc
Q psy4416 61 WKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIK 115 (290)
Q Consensus 61 ~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l~ 115 (290)
+..| +||+|+-|++ ....-+..-...|.+.||..- ++.+..+.....+++.+.
T Consensus 29 g~~P-~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~~~~l~~~I~ 82 (286)
T PRK14184 29 GRAP-GLAVILVGEDPASQVYVRNKERACEDAGIVSE-AFRLPADTTQEELEDLIA 82 (286)
T ss_pred CCCC-EEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHH
Confidence 3445 9999999985 455557788999999999865 677777666555334443
No 36
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=35.44 E-value=38 Score=29.52 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=24.0
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHHHH
Q psy4416 65 NHLVLIIGEDVILYNDITQIILWCMI 90 (290)
Q Consensus 65 ~HlAvImdgn~~g~~~l~~ll~Wc~~ 90 (290)
-|||.|.+++-.|+.++.+++.|+..
T Consensus 90 ~hIaYiP~~~ViGLSKl~Riv~~~ar 115 (188)
T PRK09347 90 AHVAYIPKGKVIGLSKIARIVDFFAR 115 (188)
T ss_pred EEEEEeCCCccccHHHHHHHHHHHHc
Confidence 49999999889999999999999875
No 37
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.06 E-value=1.2e+02 Score=28.13 Aligned_cols=52 Identities=23% Similarity=0.160 Sum_probs=37.6
Q ss_pred CCCcEEEEEEeCCcc-cHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhhc
Q psy4416 62 KKPNHLVLIIGEDVI-LYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIK 115 (290)
Q Consensus 62 kiP~HlAvImdgn~~-g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l~ 115 (290)
..| +||+|+-|++. ...-+..-...|.++||..- .+.+..+.....+++.+.
T Consensus 31 ~~P-~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~~~~l~~~I~ 83 (284)
T PRK14179 31 IVP-GLVVILVGDNPASQVYVRNKERSALAAGFKSE-VVRLPETISQEELLDLIE 83 (284)
T ss_pred CCc-eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHH
Confidence 445 89999999864 44457778899999999864 788887766655434443
No 38
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=34.88 E-value=37 Score=29.51 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=23.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHHH
Q psy4416 66 HLVLIIGEDVILYNDITQIILWCMI 90 (290)
Q Consensus 66 HlAvImdgn~~g~~~l~~ll~Wc~~ 90 (290)
|||.|.++.-.|+.++.+++.|+..
T Consensus 88 ~VaYiP~~~ViGLSKl~RiV~~~ar 112 (185)
T cd00642 88 HIAYIPKDKVIGLSKLARIVEFFSR 112 (185)
T ss_pred EEEEecCCeeeeHHHHHHHHHHHhc
Confidence 8999998888999999999999875
No 39
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.60 E-value=1.3e+02 Score=28.20 Aligned_cols=50 Identities=14% Similarity=-0.031 Sum_probs=36.0
Q ss_pred CcEEEEEEeCCcc-cHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 64 PNHLVLIIGEDVI-LYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 64 P~HlAvImdgn~~-g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
+.+||+|+-|++. ...-+..-...|.+.||.. .++.+..+....++++.+
T Consensus 32 ~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~el~~~i 82 (296)
T PRK14188 32 TPGLAVVLVGEDPASQVYVRSKGKQTKEAGMAS-FEHKLPADTSQAELLALI 82 (296)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 4499999999864 4445777899999999984 477777766665433333
No 40
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=33.74 E-value=1.3e+02 Score=29.10 Aligned_cols=46 Identities=13% Similarity=0.038 Sum_probs=33.9
Q ss_pred CCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchh
Q psy4416 62 KKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYN 109 (290)
Q Consensus 62 kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ 109 (290)
..| +||+|+-|++ ....-+..-...|.++||+. ..|.+.......+
T Consensus 102 ~~P-~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~-~~~~lpe~~te~e 148 (364)
T PLN02616 102 VVP-GLAVILVGDRKDSATYVRNKKKACDSVGINS-FEVRLPEDSTEQE 148 (364)
T ss_pred CCC-eEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHH
Confidence 345 9999999985 45555778899999999997 5666665554443
No 41
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=33.33 E-value=50 Score=30.90 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=35.5
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHHHHhCCCEEEEEecC-CCC
Q psy4416 63 KPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYK-NRL 105 (290)
Q Consensus 63 iP~HlAvImdgn~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~l 105 (290)
-|.|||+..+|++..+..+.+++.-+.+.|. .+.+--+ |.+
T Consensus 79 ~pd~vtis~~GEPTLy~~L~elI~~~k~~g~--~~tflvTNgsl 120 (296)
T COG0731 79 EPDHVTISLSGEPTLYPNLGELIEEIKKRGK--KTTFLVTNGSL 120 (296)
T ss_pred CCCEEEEeCCCCcccccCHHHHHHHHHhcCC--ceEEEEeCCCh
Confidence 5999999999999999999999999999997 3666665 545
No 42
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=32.14 E-value=46 Score=28.80 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHHH
Q psy4416 66 HLVLIIGEDVILYNDITQIILWCMI 90 (290)
Q Consensus 66 HlAvImdgn~~g~~~l~~ll~Wc~~ 90 (290)
|||.|.+++-.|+.++.+++.|+..
T Consensus 83 ~VaYiP~~~viGLSKl~RiV~~~ar 107 (179)
T PF01227_consen 83 HVAYIPGGRVIGLSKLARIVDFFAR 107 (179)
T ss_dssp EEEEE-SSEEE-HHHHHHHHHHHHS
T ss_pred EEEEEeCCcccChhHHHHHHHHHhc
Confidence 9999998889999999999999875
No 43
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.51 E-value=1.6e+02 Score=27.43 Aligned_cols=52 Identities=23% Similarity=0.202 Sum_probs=38.0
Q ss_pred CCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 61 WKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 61 ~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
+..| +||+|.-|++ ....-+..-...|.+.||.. .++.++.+....++++.+
T Consensus 30 g~~p-~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~~~~~l~~~I 82 (285)
T PRK14189 30 GHQP-GLAVILVGDNPASQVYVRNKVKACEDNGFHS-LKDRYPADLSEAELLARI 82 (285)
T ss_pred CCCC-eEEEEEeCCCchHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 3445 9999999985 44555778899999999985 577887776666533444
No 44
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.95 E-value=1.7e+02 Score=27.24 Aligned_cols=52 Identities=17% Similarity=0.026 Sum_probs=37.0
Q ss_pred CCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 61 WKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 61 ~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
+..| +||+|+-|++ ....-+..-...|.++||.. .++.++.......+++.+
T Consensus 36 g~~P-~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~~~~el~~~I 88 (287)
T PRK14176 36 GITP-GLATILVGDDPASKMYVRLKHKACERVGIRA-EDQFLPADTTQEELLELI 88 (287)
T ss_pred CCCC-eEEEEEECCCcchHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 3445 9999999985 45555788899999999975 567777665555433333
No 45
>PF15560 Imm8: Immunity protein 8
Probab=30.32 E-value=2.6e+02 Score=22.86 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=52.4
Q ss_pred eEEEEEeCCCcHHHHHHHHHHHHhcc-CCcchHHHHHHhhhcCCCCCCcEEEEeCCCcccCCCcc----hhhcc------
Q psy4416 186 TELNILSRKQCESDLLNSIVELGETN-LSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLP----WNIRL------ 254 (290)
Q Consensus 186 l~vnlls~ydGr~eIv~a~r~l~~~~-~~~~di~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlp----Wqir~------ 254 (290)
|.+++-+-+||.....+++-.++.+. .+..+. + +...- .++.-.|+-+.++|. .|-|-| .|.||
T Consensus 1 Mei~ln~ViGG~~~~~~~~~~~ir~mRk~lKk~-F-~~~~~-e~l~k~kI~l~~sGd--vS~Y~~~sGIyq~rY~~kkke 75 (133)
T PF15560_consen 1 MEIILNIVIGGQIDAEKNLHSLIREMRKSLKKQ-F-ESIEF-EGLDKIKINLYFSGD--VSSYCDKSGIYQCRYFSKKKE 75 (133)
T ss_pred CeEEEEEEEcCcchHHHHHHHHHHHHHHHHHHH-H-HhhhH-hhhhhEeEEEEEcCc--hhhhcCCCCcchhHHHHhhhh
Confidence 46777788999988887766665431 011111 0 00110 245667899999886 455554 78877
Q ss_pred --eeEEEcCCC----CCCCHHHHHHHHHHH
Q psy4416 255 --TEFFQFDNY----YDISASKFKNILRKY 278 (290)
Q Consensus 255 --TEi~~~~~~----p~~~~~~f~~aL~~Y 278 (290)
+|+.+.+.. |--+..-|+.-+.++
T Consensus 76 fv~~fcid~~~W~s~k~~dv~kFL~~~~~~ 105 (133)
T PF15560_consen 76 FVVEFCIDRNYWTSEKLEDVNKFLLFIEDL 105 (133)
T ss_pred eeEEEEeccccccCCccccHHHHHHHHHHH
Confidence 667776653 555555677665544
No 46
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=29.47 E-value=1.6e+02 Score=28.28 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=37.5
Q ss_pred CCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 61 WKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 61 ~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
+..| +||+|+-|++ ...--+..-...|.++||..- ++.+..+....++++.+
T Consensus 84 g~~P-~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~-~~~l~~~~te~ell~~I 136 (345)
T PLN02897 84 GKVP-GLAVVLVGQQRDSQTYVRNKIKACEETGIKSL-LAELPEDCTEGQILSAL 136 (345)
T ss_pred CCCC-eEEEEEeCCChHHHHHHHHHHHHHHhcCCEEE-EEECCCCCCHHHHHHHH
Confidence 4446 8999999985 445557888999999999865 67887666555433433
No 47
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=29.08 E-value=1.3e+02 Score=23.82 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHHHHHhCCCEEEE
Q psy4416 75 VILYNDITQIILWCMIAGVSFVSV 98 (290)
Q Consensus 75 ~~g~~~l~~ll~Wc~~~GI~~lSl 98 (290)
+.-++.+.+++..|..+|++.+++
T Consensus 94 ~~~~~~vv~v~d~~~~~G~~~v~l 117 (121)
T TIGR02804 94 EAKFQDFVTITDMLKAKEHENVQI 117 (121)
T ss_pred CCCHhHHHHHHHHHHHcCCCeEEE
Confidence 567788888888888888888876
No 48
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=28.60 E-value=1.1e+02 Score=24.17 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=32.0
Q ss_pred CCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhhc
Q psy4416 62 KKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIK 115 (290)
Q Consensus 62 kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l~ 115 (290)
.++-+||+|..|++ ....-+......|.++||.+- .|.+..+-....+++.+.
T Consensus 27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~-~~~l~~~~~~~el~~~i~ 80 (117)
T PF00763_consen 27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFE-LIELPEDISEEELLELIE 80 (117)
T ss_dssp T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEE-EEEE-TTSSHHHHHHHHH
T ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceE-EEECCCCcCHHHHHHHHH
Confidence 45669999999985 445558889999999999864 456655555444334443
No 49
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=27.97 E-value=1.6e+02 Score=24.14 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=20.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHHHhCCCEEEEEecC
Q psy4416 66 HLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYK 102 (290)
Q Consensus 66 HlAvImdgn~~g~~~l~~ll~Wc~~~GI~~lSlYd~s 102 (290)
++.+++.-.....+++.+++.|+.+.|+..++++.+.
T Consensus 154 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 190 (216)
T smart00729 154 STDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLS 190 (216)
T ss_pred EEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeee
Confidence 3334443333455666666666666666666655553
No 50
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=27.46 E-value=1.3e+02 Score=28.75 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=26.2
Q ss_pred CcEEEEEEeCC----------cccHHH-HHHHHHHHHHhCCCEE
Q psy4416 64 PNHLVLIIGED----------VILYND-ITQIILWCMIAGVSFV 96 (290)
Q Consensus 64 P~HlAvImdgn----------~~g~~~-l~~ll~Wc~~~GI~~l 96 (290)
|.|.||.+.-+ ..|.+. ..++-+-+.+.||+.+
T Consensus 263 PTH~AVAL~Yd~~~~~aP~VvAKG~d~~A~~Ir~iA~e~~VPiv 306 (349)
T PRK12721 263 PTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVV 306 (349)
T ss_pred CCceEEEEEeCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEE
Confidence 88999999865 256665 4478888999999987
No 51
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=27.42 E-value=83 Score=29.62 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=28.3
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHHHHhCC
Q psy4416 63 KPNHLVLIIGEDVILYNDITQIILWCMIAGV 93 (290)
Q Consensus 63 iP~HlAvImdgn~~g~~~l~~ll~Wc~~~GI 93 (290)
-|+|+||-+.|++-....+.+++..+.+.||
T Consensus 129 ~~~~v~iSl~GEPlL~p~l~eli~~~k~~Gi 159 (322)
T PRK13762 129 EPKHVAISLSGEPTLYPYLPELIEEFHKRGF 159 (322)
T ss_pred CCCEEEEeCCccccchhhHHHHHHHHHHcCC
Confidence 3899999999998777889999999999998
No 52
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.17 E-value=1.9e+02 Score=26.90 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=36.2
Q ss_pred CCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 63 KPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 63 iP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
.| +||+|+-|++ ....-+..-...|.+.||.. .+|.+..+....++++.+
T Consensus 33 ~P-~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~s~~el~~~I 83 (285)
T PRK10792 33 AP-GLAVVLVGSDPASQVYVASKRKACEEVGFVS-RSYDLPETTSEAELLALI 83 (285)
T ss_pred Cc-eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 35 9999999985 45555778899999999974 677787666655533444
No 53
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.15 E-value=1.9e+02 Score=26.93 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=37.2
Q ss_pred CCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 61 WKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 61 ~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
+..| +||+|+-|++ ....-+..-...|.++||.. .+|.+..+.....+++.+
T Consensus 30 g~~p-~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~~l~~~I 82 (286)
T PRK14175 30 GFTP-KLSVILVGNDGASQSYVRSKKKAAEKIGMIS-EIVHLEETATEEEVLNEL 82 (286)
T ss_pred CCCC-eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 3445 8999999985 45555788899999999975 577887766554433333
No 54
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=26.55 E-value=1.5e+02 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=18.8
Q ss_pred cccHHHHHHHHHHHHHhCCCEEEE
Q psy4416 75 VILYNDITQIILWCMIAGVSFVSV 98 (290)
Q Consensus 75 ~~g~~~l~~ll~Wc~~~GI~~lSl 98 (290)
+.-++.+.+++.-|.++|++.+++
T Consensus 95 ~~~~~~vv~v~d~~~~aG~~~v~l 118 (122)
T TIGR02803 95 TVDYGDLMKVMNLLRQAGYLKIGL 118 (122)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 467777888888888888888776
No 55
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=26.44 E-value=66 Score=28.38 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=23.6
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHHHH
Q psy4416 65 NHLVLIIGEDVILYNDITQIILWCMI 90 (290)
Q Consensus 65 ~HlAvImdgn~~g~~~l~~ll~Wc~~ 90 (290)
-|||.|.++.-.|+.++.+++.|+..
T Consensus 102 ~hVaYiP~~~VvGLSKl~RiV~~~ar 127 (201)
T PRK12606 102 AHVAYLPGGKVLGLSKIARIVDMFAR 127 (201)
T ss_pred EEEEEeCCCccccHHHHHHHHHHHhc
Confidence 59999998888999999999999865
No 56
>PRK09482 flap endonuclease-like protein; Provisional
Probab=26.12 E-value=1.1e+02 Score=28.04 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=25.7
Q ss_pred CCcEEEEEEeCC----------------------cccHHHHHHHHHHHHHhCCCEEEE
Q psy4416 63 KPNHLVLIIGED----------------------VILYNDITQIILWCMIAGVSFVSV 98 (290)
Q Consensus 63 iP~HlAvImdgn----------------------~~g~~~l~~ll~Wc~~~GI~~lSl 98 (290)
-|.|++|+.|+. +....++..+-..+.++||++++.
T Consensus 46 ~p~~i~v~fD~~~~~~~fR~~l~p~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~~~ 103 (256)
T PRK09482 46 QPTHAVAVFDGDARSSGWRHQLLPDYKAGRKPMPEALQQGLPAIRAAFEELGIDSWHA 103 (256)
T ss_pred CCCEEEEEEeCCCCCcccHHHHhHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCEecc
Confidence 499999999974 133445555667778889988753
No 57
>smart00475 53EXOc 5'-3' exonuclease.
Probab=25.88 E-value=1.2e+02 Score=27.57 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=26.1
Q ss_pred CCcEEEEEEeCC--------------------cccHHHHHHHHHHHHHhCCCEEEEEec
Q psy4416 63 KPNHLVLIIGED--------------------VILYNDITQIILWCMIAGVSFVSVYDY 101 (290)
Q Consensus 63 iP~HlAvImdgn--------------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~ 101 (290)
-|.|++++.|+. +....++..+-+.+..+||+++..-.+
T Consensus 48 ~p~~~~~~fD~~~~~~R~~l~p~YKa~R~~~pe~L~~q~~~~~~~l~~~gi~~i~~~g~ 106 (259)
T smart00475 48 KPTYVAVVFDAKGKTFRHELYPEYKANRPKTPDELLEQIPLIKELLDALGIPVLEVEGY 106 (259)
T ss_pred CCCeEEEEEeCCCCccccchhHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEEeeCCc
Confidence 499999999984 123344445555666789988875443
No 58
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.84 E-value=2.1e+02 Score=26.52 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=37.2
Q ss_pred CCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 61 WKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 61 ~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
+..| +||+|+-|++ ....-+......|.++||.. .+|.+..+.....+++.+
T Consensus 28 g~~P-~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~t~~~l~~~I 80 (282)
T PRK14166 28 GIES-CLAVILVGDNPASQTYVKSKAKACEECGIKS-LVYHLNENTTQNELLALI 80 (282)
T ss_pred CCCc-eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 3445 9999999985 44455778899999999984 677887665555433333
No 59
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=25.82 E-value=65 Score=29.57 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=23.9
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHHHH
Q psy4416 65 NHLVLIIGEDVILYNDITQIILWCMI 90 (290)
Q Consensus 65 ~HlAvImdgn~~g~~~l~~ll~Wc~~ 90 (290)
-|||.|.++.-.|+.++.+++.|+..
T Consensus 161 ~hIaYiP~~~ViGLSKl~RiV~~~ar 186 (259)
T PTZ00484 161 CTIGYIPNKKVLGLSKFARIIEIFSR 186 (259)
T ss_pred EEEEEecCCeEecHHHHHHHHHHHhc
Confidence 49999999889999999999999875
No 60
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=25.14 E-value=1.6e+02 Score=23.33 Aligned_cols=36 Identities=22% Similarity=0.463 Sum_probs=27.6
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHHHHhCCCEEEE
Q psy4416 63 KPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSV 98 (290)
Q Consensus 63 iP~HlAvImdgn~~g~~~l~~ll~Wc~~~GI~~lSl 98 (290)
-|....+|--.++..++.+.+++.-|.++|++.+++
T Consensus 91 ~~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l 126 (129)
T TIGR02801 91 NPDTPVLIRADKTVPYGEVIKVMALLKQAGIEKVGL 126 (129)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 354444444445788999999999999999999886
No 61
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.71 E-value=2.3e+02 Score=26.55 Aligned_cols=51 Identities=22% Similarity=0.142 Sum_probs=35.9
Q ss_pred CCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 62 KKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 62 kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
..| +||+|+-|++ ....-+..-...|.++||+. .++.+..+....++++.+
T Consensus 32 ~~P-~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~t~~~l~~~I 83 (301)
T PRK14194 32 IEP-ALAVILVGNDPASQVYVRNKILRAEEAGIRS-LEHRLPADTSQARLLALI 83 (301)
T ss_pred CCC-eEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 345 9999999985 44445778899999999985 466776665555433444
No 62
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.18 E-value=2.4e+02 Score=26.44 Aligned_cols=52 Identities=13% Similarity=0.018 Sum_probs=36.8
Q ss_pred CCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 61 WKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 61 ~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
+..| +||+|+-|++ ....-+..-...|.++||.. .+|.+..+.....+++.+
T Consensus 30 g~~p-~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~el~~~I 82 (297)
T PRK14186 30 GRPP-GLAVLRVGDDPASAVYVRNKEKACARVGIAS-FGKHLPADTSQAEVEALI 82 (297)
T ss_pred CCCc-eEEEEEeCCChHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 3345 8999999985 45555788899999999985 567777665554433333
No 63
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=24.05 E-value=1.3e+02 Score=26.98 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=26.2
Q ss_pred CcEEEEEEeCC--------------------cccHHHHHHHHHHHHHhCCCEEEEE
Q psy4416 64 PNHLVLIIGED--------------------VILYNDITQIILWCMIAGVSFVSVY 99 (290)
Q Consensus 64 P~HlAvImdgn--------------------~~g~~~l~~ll~Wc~~~GI~~lSlY 99 (290)
|.|+++++|+. +.....+..+-+++..+||+++..-
T Consensus 50 p~~~~~~fD~~~~~~R~~l~p~YK~~R~~~p~~l~~q~~~~~~~l~~~gi~~i~~~ 105 (240)
T cd00008 50 PTYVAVVFDAGGKTFRHELYPEYKANRKKMPEELREQIPLIKELLEALGIPVLEIE 105 (240)
T ss_pred CCeEEEEEeCCCCcccccccHHHHcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecC
Confidence 99999999985 1233445566667777899988763
No 64
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=24.01 E-value=1.8e+02 Score=27.72 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=26.3
Q ss_pred CcEEEEEEeCC----------cccHHHH-HHHHHHHHHhCCCEEE
Q psy4416 64 PNHLVLIIGED----------VILYNDI-TQIILWCMIAGVSFVS 97 (290)
Q Consensus 64 P~HlAvImdgn----------~~g~~~l-~~ll~Wc~~~GI~~lS 97 (290)
|.|.||.+.-+ ..|.+.+ .++-+-+.+.||+.+.
T Consensus 262 PTH~AVAL~Yd~~~~~AP~VvAKG~d~~A~~Ir~iA~e~~VPive 306 (342)
T TIGR01404 262 PTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVR 306 (342)
T ss_pred CceeEEEeEECCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEee
Confidence 88999999865 2566664 4788889999999873
No 65
>PRK09108 type III secretion system protein HrcU; Validated
Probab=23.77 E-value=1.7e+02 Score=28.10 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=26.5
Q ss_pred CcEEEEEEeCC----------cccHHH-HHHHHHHHHHhCCCEEE
Q psy4416 64 PNHLVLIIGED----------VILYND-ITQIILWCMIAGVSFVS 97 (290)
Q Consensus 64 P~HlAvImdgn----------~~g~~~-l~~ll~Wc~~~GI~~lS 97 (290)
|.|.||.+.-+ ..|.+. ..++.+-+.+.||+.+-
T Consensus 265 PTH~AVAL~Y~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~VPvve 309 (353)
T PRK09108 265 PTHYAVALRYAPDEHPLPRVIAKGVDDGALALRRHAHALGIPIVG 309 (353)
T ss_pred CCceEEEeEeCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEe
Confidence 88999999865 256655 44788889999999873
No 66
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=23.66 E-value=2.6e+02 Score=26.18 Aligned_cols=52 Identities=19% Similarity=0.150 Sum_probs=36.1
Q ss_pred CCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 61 WKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 61 ~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
+..| +||+|+-|++ ....-+..-...|.++||.. ..|.+..+.....+++.+
T Consensus 37 g~~P-~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~s~~el~~~I 89 (299)
T PLN02516 37 GKVP-GLAVVIVGSRKDSQTYVNMKRKACAEVGIKS-FDVDLPENISEAELISKV 89 (299)
T ss_pred CCCC-eEEEEEECCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 4456 9999999985 45555778899999999985 566776655444433333
No 67
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.15 E-value=2.2e+02 Score=26.60 Aligned_cols=51 Identities=22% Similarity=0.213 Sum_probs=36.4
Q ss_pred CCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 62 KKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 62 kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
..| +||+|.-|++ ....-+..-...|.++||+. .++.+..+-....+++.+
T Consensus 30 ~~P-~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~~~~el~~~I 81 (295)
T PRK14174 30 KVP-GLTVIIVGEDPASQVYVRNKAKSCKEIGMNS-TVIELPADTTEEHLLKKI 81 (295)
T ss_pred CCC-eEEEEEeCCChHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 345 9999999985 44455778899999999985 567777665544433333
No 68
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=22.39 E-value=84 Score=27.29 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcc-------CCcchH-HHHHHhhhcCCCCCCcEEEEeCCC
Q psy4416 198 SDLLNSIVELGETN-------LSVSDT-IMKERLQEKCPLPDPEVAIVIGRK 241 (290)
Q Consensus 198 ~eIv~a~r~l~~~~-------~~~~di-~i~~~L~~~~~~pePDLlIrtgg~ 241 (290)
+.+.+||++.+..- ++.+|. .+.+.|... ..+++|++++|-|+
T Consensus 26 PtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~-~~~~v~v~VVTDG~ 76 (182)
T PF00390_consen 26 PTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNW-PERDVRVIVVTDGE 76 (182)
T ss_dssp TCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTS-S-SS--EEEEE-SS
T ss_pred chHHHHHHHHHHhhccccceEEecCChHHHHHHHHhh-hccCceEEEEeCch
Confidence 45778888887652 345554 677888876 68899999999887
No 69
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.37 E-value=2e+02 Score=27.98 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=26.8
Q ss_pred CcEEEEEEeCC----------cccHHH-HHHHHHHHHHhCCCEEE
Q psy4416 64 PNHLVLIIGED----------VILYND-ITQIILWCMIAGVSFVS 97 (290)
Q Consensus 64 P~HlAvImdgn----------~~g~~~-l~~ll~Wc~~~GI~~lS 97 (290)
|.|+||.+.-+ ..|.+. ..++.+-+.+.||+.+-
T Consensus 270 PTH~AVALkY~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~VPive 314 (386)
T PRK12468 270 PTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLE 314 (386)
T ss_pred CCceEEEEEeCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCcEEe
Confidence 88999999865 256655 44788899999999883
No 70
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=22.20 E-value=1.9e+02 Score=22.19 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=30.3
Q ss_pred EEEEEEeCC----cccHHHHHHHHHHH-HHhCCCEEEEEecCCCCCc
Q psy4416 66 HLVLIIGED----VILYNDITQIILWC-MIAGVSFVSVYDYKNRLSH 107 (290)
Q Consensus 66 HlAvImdgn----~~g~~~l~~ll~Wc-~~~GI~~lSlYd~sg~lkr 107 (290)
++++.++.. ..|.+.+..++.|| ...|+..+......+|...
T Consensus 86 eig~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s 132 (142)
T PF13302_consen 86 EIGYWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEAS 132 (142)
T ss_dssp EEEEEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHH
T ss_pred ccccchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHH
Confidence 555555543 24557789999999 6899999999988876433
No 71
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.16 E-value=2e+02 Score=27.61 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=25.9
Q ss_pred CcEEEEEEeCC----------cccHHHH-HHHHHHHHHhCCCEE
Q psy4416 64 PNHLVLIIGED----------VILYNDI-TQIILWCMIAGVSFV 96 (290)
Q Consensus 64 P~HlAvImdgn----------~~g~~~l-~~ll~Wc~~~GI~~l 96 (290)
|.|+||.+.-+ ..|.+.+ .++-+-+.+.||+.+
T Consensus 272 PTH~AVAL~Yd~~~~~aP~VvAKG~d~~A~~Ir~~A~e~~VPiv 315 (358)
T PRK13109 272 PTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAEENGIPVI 315 (358)
T ss_pred CCceEEEeEeCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEE
Confidence 88999999865 2566654 478888999999987
No 72
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=21.41 E-value=5.9e+02 Score=24.14 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=30.6
Q ss_pred hhHhhhcCC---CCCcEEEEEEeCC-----------cccHHHHHHHHHHHHHhCCCEE
Q psy4416 53 LFLTLINNW---KKPNHLVLIIGED-----------VILYNDITQIILWCMIAGVSFV 96 (290)
Q Consensus 53 ~~~~v~~~~---kiP~HlAvImdgn-----------~~g~~~l~~ll~Wc~~~GI~~l 96 (290)
++.+|.+.. +=|.|+|+.+--. .+.-++...++.-+.+.||+.|
T Consensus 250 l~~nVkrStviv~nPThiaI~l~Y~~gETplPlVi~k~~daqA~~i~~iAe~~~ipVv 307 (349)
T COG4792 250 LANNVKRSTVIVKNPTHIAICLRYKRGETPLPLVIEKGTDAQALQIVKIAEEEGIPVV 307 (349)
T ss_pred hhhccceeeEEEecCceEEEEEeeccCCCCCCEEEEecCcHHHHHHHHHHHHhCCCee
Confidence 344454433 5599999998754 1333557788889999999876
No 73
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.29 E-value=1.7e+02 Score=23.18 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=33.2
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4416 64 PNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKN 103 (290)
Q Consensus 64 P~HlAvImdgn~~g~~~l~~ll~Wc~~~GI~~lSlYd~sg 103 (290)
|.++++++......-+...+++.++.+.|.+.+++=...+
T Consensus 61 ~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~it~~~~ 100 (153)
T cd05009 61 EGTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITDDGD 100 (153)
T ss_pred CCCcEEEEecCChhHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 6788888887766667799999999999999999866543
No 74
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.19 E-value=2e+02 Score=26.65 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=33.9
Q ss_pred CCCCCcEEEEEEeCCcccHHHHHHHHHHHHHhCCCEEEEEecC
Q psy4416 60 NWKKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYK 102 (290)
Q Consensus 60 ~~kiP~HlAvImdgn~~g~~~l~~ll~Wc~~~GI~~lSlYd~s 102 (290)
.++.|++||||--.+..++.++...+.- ....-.+.+|.-.
T Consensus 10 lP~~p~~I~vITs~~gAa~~D~~~~~~~--r~~~~~~~~~p~~ 50 (319)
T PF02601_consen 10 LPKFPKRIAVITSPTGAAIQDFLRTLKR--RNPIVEIILYPAS 50 (319)
T ss_pred CCCCCCEEEEEeCCchHHHHHHHHHHHH--hCCCcEEEEEecc
Confidence 4778999999999999999998888876 6666778888765
No 75
>PRK06298 type III secretion system protein; Validated
Probab=20.93 E-value=2.3e+02 Score=27.27 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=26.4
Q ss_pred CcEEEEEEeCC----------cccHHH-HHHHHHHHHHhCCCEEE
Q psy4416 64 PNHLVLIIGED----------VILYND-ITQIILWCMIAGVSFVS 97 (290)
Q Consensus 64 P~HlAvImdgn----------~~g~~~-l~~ll~Wc~~~GI~~lS 97 (290)
|.|+||-+.-+ ..|.+. ..++-+-+.+.||+.+.
T Consensus 264 PTH~AVALkYd~~~~~AP~VvAKG~d~~A~~Ir~iA~e~~VPive 308 (356)
T PRK06298 264 PKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMR 308 (356)
T ss_pred CCceEEEeEeCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEEe
Confidence 88999999865 256655 44788889999999874
No 76
>PRK14976 5'-3' exonuclease; Provisional
Probab=20.68 E-value=1.6e+02 Score=27.13 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=25.3
Q ss_pred CCcEEEEEEeCC--------------------cccHHHHHHHHHHHHHhCCCEEEEE
Q psy4416 63 KPNHLVLIIGED--------------------VILYNDITQIILWCMIAGVSFVSVY 99 (290)
Q Consensus 63 iP~HlAvImdgn--------------------~~g~~~l~~ll~Wc~~~GI~~lSlY 99 (290)
-|.|++++.|+. +.....+..+-.++..+||+.+..=
T Consensus 54 ~p~~~~v~fD~~~~~~R~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~ 110 (281)
T PRK14976 54 NPSYILIAFDAGRKTFRHQLYDEYKQGRKKTPESLISQIPLLKKILKLAGIKWEEQP 110 (281)
T ss_pred CCCEEEEEEECCCCcccccccHHHhcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecC
Confidence 489999999984 1233344555556677899888654
No 77
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.55 E-value=2.6e+02 Score=28.97 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=26.1
Q ss_pred CcEEEEEEeCC----------cccHHHH-HHHHHHHHHhCCCEE
Q psy4416 64 PNHLVLIIGED----------VILYNDI-TQIILWCMIAGVSFV 96 (290)
Q Consensus 64 P~HlAvImdgn----------~~g~~~l-~~ll~Wc~~~GI~~l 96 (290)
|.|+||.+.-+ ..|.+.+ .++.+-+.+.||+.+
T Consensus 562 PTHyAVALKYdp~~~~APiVVAKG~D~lAlrIReiAeE~gVPIV 605 (646)
T PRK12773 562 PTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTV 605 (646)
T ss_pred CCceEEEEEECCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCcEE
Confidence 88999999865 2566664 478888999999987
No 78
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.48 E-value=3.2e+02 Score=25.45 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=35.3
Q ss_pred CCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 63 KPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 63 iP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
.| +||+|+-|++ ....-+......|.+.||.. .++.+..+.....+++.+
T Consensus 33 ~P-~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~s~~el~~~I 83 (284)
T PRK14177 33 IP-KLATILVGNNPASETYVSMKVKACHKVGMGS-EMIRLKEQTTTEELLGVI 83 (284)
T ss_pred CC-eEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 46 9999999985 45555778899999999975 566776655544433333
No 79
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.33 E-value=3.2e+02 Score=25.36 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=37.0
Q ss_pred CCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 61 WKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 61 ~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
+..| +||+|+-|++ ....-+..-...|.++||.. .+|.+..+....++++.+
T Consensus 28 g~~P-~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~el~~~I 80 (282)
T PRK14169 28 DVTP-TLAVVLVGSDPASEVYVRNKQRRAEDIGVRS-LMFRLPEATTQADLLAKV 80 (282)
T ss_pred CCCC-eEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 3445 8999999985 45555778899999999975 567787665555433333
No 80
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.07 E-value=3.4e+02 Score=25.23 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=36.8
Q ss_pred CCCcEEEEEEeCCcc-cHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhh
Q psy4416 62 KKPNHLVLIIGEDVI-LYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAI 114 (290)
Q Consensus 62 kiP~HlAvImdgn~~-g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l 114 (290)
..| +||+|+-|++. ...-+..-...|.++||.. .++.++.+....++++.+
T Consensus 31 ~~P-~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~t~~el~~~I 82 (284)
T PRK14193 31 ITP-GLGTVLVGDDPGSQAYVRGKHRDCAEVGITS-IRRDLPADATQEELNAVI 82 (284)
T ss_pred CCc-eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHH
Confidence 345 99999999864 4445778899999999975 567777766665533444
Done!