Query psy4416
Match_columns 290
No_of_seqs 156 out of 1400
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 16:34:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f75_A Undecaprenyl pyrophosph 100.0 3.8E-57 1.3E-61 405.6 16.8 220 48-288 5-249 (249)
2 2d2r_A Undecaprenyl pyrophosph 100.0 1.8E-55 6E-60 393.7 15.5 209 60-289 12-244 (245)
3 3sgv_B Undecaprenyl pyrophosph 100.0 3.4E-55 1.2E-59 391.4 16.3 208 60-288 14-246 (253)
4 4h8e_A Undecaprenyl pyrophosph 100.0 3.2E-55 1.1E-59 392.1 16.2 209 59-288 20-253 (256)
5 3ugs_B Undecaprenyl pyrophosph 100.0 1.6E-54 5.6E-59 381.0 20.2 204 61-287 4-225 (225)
6 3qas_B Undecaprenyl pyrophosph 100.0 6.5E-55 2.2E-59 391.4 15.6 212 56-288 6-246 (253)
7 2vg3_A Undecaprenyl pyrophosph 100.0 1E-54 3.5E-59 394.9 17.0 210 58-288 50-284 (284)
8 2vg0_A Short-chain Z-isoprenyl 100.0 1.1E-51 3.8E-56 366.3 17.3 197 62-281 1-227 (227)
9 3ngx_A Bifunctional protein fo 43.5 52 0.0018 29.1 6.7 61 52-115 16-77 (276)
10 2pfu_A Biopolymer transport EX 35.1 37 0.0013 24.3 3.8 35 64-98 56-90 (99)
11 1wur_A GTP cyclohydrolase I; b 29.9 31 0.0011 29.6 2.8 25 66-90 120-144 (220)
12 1is8_A GTP cyclohydrolase I; e 28.7 30 0.001 29.9 2.6 25 66-90 133-157 (230)
13 3pzj_A Probable acetyltransfer 22.3 1.5E+02 0.0051 23.3 5.7 30 76-105 136-165 (209)
14 1a8r_A GTP cyclohydrolase I; p 22.1 43 0.0015 28.8 2.3 26 65-90 121-146 (221)
No 1
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=100.00 E-value=3.8e-57 Score=405.64 Aligned_cols=220 Identities=16% Similarity=0.248 Sum_probs=155.2
Q ss_pred ccchhhhHhhhcCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-h
Q psy4416 48 NNKSTLFLTLINNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-L 110 (290)
Q Consensus 48 ~~~~~~~~~v~~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-l 110 (290)
+.|+.|++||.+.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +
T Consensus 5 ~~~~~I~~d~~~~~~iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~E 84 (249)
T 1f75_A 5 KKRKAIKNNNINAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDE 84 (249)
T ss_dssp ---------CCCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-----------
T ss_pred CchhHhhhcccccCCCCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHH
Confidence 456779999999999999999999998 2689999999999999999999999999 7999997 5
Q ss_pred HhhhccchhhHHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEE
Q psy4416 111 LSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNI 190 (290)
Q Consensus 111 l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnl 190 (290)
++.|+ +++.+. +.. .+++...+..++.+.|+.. .+|.+....+...++.| ++|++++||+
T Consensus 85 V~~Lm--~l~~~~--l~~-----~~~~l~~~~vr~~~iG~~~----------~lp~~~~~~i~~~~~~T-~~n~~l~lni 144 (249)
T 1f75_A 85 VNYLM--KLPGDF--LNT-----FLPELIEKNVKVETIGFID----------DLPDHTKKAVLEAKEKT-KHNTGLTLVF 144 (249)
T ss_dssp -CGGG--THHHHH--HHH-----HHHHHHHTTCEEEEESCGG----------GSCHHHHHHHHHHHHTT-TTCCSCEEEE
T ss_pred HHHHH--HHHHHH--HHH-----HHHHHHHcCeEEEEeCChh----------hCCHHHHHHHHHHHHhh-cCCCceEEEE
Confidence 55555 444322 210 0111112334555556432 23444445555555554 7899999999
Q ss_pred EeCCCcHHHHHHHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC
Q psy4416 191 LSRKQCESDLLNSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY 263 (290)
Q Consensus 191 ls~ydGr~eIv~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~ 263 (290)
|++||||+||++|+|+++++. ++++|+ .++++|+.. +.|||||+|||||+.|||||||||++||||||++.+
T Consensus 145 a~~YggR~eIv~A~r~l~~~v~~g~l~~~~I~e~~i~~~L~t~-~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~l 223 (249)
T 1f75_A 145 ALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFTA-NMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEF 223 (249)
T ss_dssp ECSCCHHHHHHHHHHHHHHHHHTTSSCGGGCSHHHHGGGSTTT-TSCCCSEEEECTTCCBCCSCSTTTTTTCEEEECCSC
T ss_pred EecCCCHHHHHHHHHHHHHHHHcCCCChHhCCHHHHHHhhccC-CCCCCcEEEEcCCCccccCCchhhhhceEEEECCCC
Confidence 999999999999999998762 555554 677888864 899999999999999999999999999999999997
Q ss_pred -CCCCHHHHHHHHHHHhhhhhccCCC
Q psy4416 264 -YDISASKFKNILRKYSKCEQRYGKP 288 (290)
Q Consensus 264 -p~~~~~~f~~aL~~Ys~~~~R~Gk~ 288 (290)
|||++.+|.+||.+||+|+||||+.
T Consensus 224 WPdF~~~~~~~Al~~y~~r~RRfG~~ 249 (249)
T 1f75_A 224 WPDFNEESLAQCISIYQNRHRRFGGL 249 (249)
T ss_dssp GGGCCHHHHHHHHHHHTTC-------
T ss_pred CCcCCHHHHHHHHHHHhcCccCCCCC
Confidence 9999999999999999999999973
No 2
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00 E-value=1.8e-55 Score=393.68 Aligned_cols=209 Identities=13% Similarity=0.243 Sum_probs=152.7
Q ss_pred CCCCCcEEEEEEeCCc---------------ccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHH
Q psy4416 60 NWKKPNHLVLIIGEDV---------------ILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEE 122 (290)
Q Consensus 60 ~~kiP~HlAvImdgn~---------------~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~ 122 (290)
++++|+|||||||||. .|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +++.+
T Consensus 12 l~~iP~HVAiImDGN~RwAk~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm--~l~~~ 89 (245)
T 2d2r_A 12 LDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM--KMLKK 89 (245)
T ss_dssp --CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHH--HHHHH
T ss_pred cCCCCCEEEEEecCchHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHH--HHHHH
Confidence 4789999999999982 589999999999999999999999999 6999997 455555 44432
Q ss_pred hhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHH
Q psy4416 123 FNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLN 202 (290)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~ 202 (290)
. +.. .+++...+..++.+.|+.. .+|.+....+...++.| ++|++++||+|++||||+||++
T Consensus 90 ~--l~~-----~~~~l~~~~vrl~~iG~~~----------~lp~~~~~~i~~a~~~T-~~n~~l~lnia~~YggR~EIv~ 151 (245)
T 2d2r_A 90 Y--LKD-----ERSTYLDNNIRFRAIGDLE----------GFSKELRDTILQLENDT-RHFKDFTQVLALNYGSKNELSR 151 (245)
T ss_dssp H--HHH-----HHHHHHHTTCEEEEESCGG----------GSCHHHHHHHHHHHHHH-TTCCSCEEEEECSCCHHHHHHH
T ss_pred H--HHH-----HHHHHHHcCeEEEEecChh----------hCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCHHHHHH
Confidence 2 210 0111112344565556432 23444445555555555 7899999999999999999999
Q ss_pred HHHHHHhcc---CCcch---HHHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHH
Q psy4416 203 SIVELGETN---LSVSD---TIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNIL 275 (290)
Q Consensus 203 a~r~l~~~~---~~~~d---i~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL 275 (290)
|+|+++++. ++++| ..++++|+.. +.|||||+|||||+.|||||||||++||||||++.+ |||++.+|.+||
T Consensus 152 A~r~i~~~v~~~l~~~~I~e~~i~~~L~t~-~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al 230 (245)
T 2d2r_A 152 AFKSLLESPPSNISLLESLENEISNRLDTR-NLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENII 230 (245)
T ss_dssp HHHHHHHSCCTTGGGCSCCHHHHHTTSTTT-TSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhhCCHHHHHHHhccC-CCCCCcEEEEcCCCccccCCcchhhcceEEEECCCCCCcCCHHHHHHHH
Confidence 999999863 23333 3778888874 899999999999999999999999999999999997 999999999999
Q ss_pred HHHhhhhhccCCCC
Q psy4416 276 RKYSKCEQRYGKPT 289 (290)
Q Consensus 276 ~~Ys~~~~R~Gk~~ 289 (290)
.+||+|+||||+..
T Consensus 231 ~~y~~R~RRfG~~~ 244 (245)
T 2d2r_A 231 SDFYKRVRKFGELK 244 (245)
T ss_dssp HHHHHHCC------
T ss_pred HHHHhcCccCCCCC
Confidence 99999999999863
No 3
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=100.00 E-value=3.4e-55 Score=391.43 Aligned_cols=208 Identities=16% Similarity=0.243 Sum_probs=155.2
Q ss_pred CCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHH
Q psy4416 60 NWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEE 122 (290)
Q Consensus 60 ~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~ 122 (290)
..++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +++.+
T Consensus 14 ~~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm--~L~~~ 91 (253)
T 3sgv_B 14 PAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALM--ELFVW 91 (253)
T ss_dssp CTTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHH--HHHHT
T ss_pred CCCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHH--HHHHH
Confidence 357999999999999 3799999999999999999999999999 7999998 444444 44432
Q ss_pred hhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHH
Q psy4416 123 FNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLN 202 (290)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~ 202 (290)
. +.. .++....+..++.+.|+.. .+|++....++..++.| ++|++++||+|++||||+||++
T Consensus 92 ~--l~~-----~~~~l~~~~vrvr~iGd~~----------~Lp~~l~~~i~~ae~~T-~~n~~~~lnia~~YggR~EI~~ 153 (253)
T 3sgv_B 92 A--LDS-----EVKSLHRHNVRLRIIGDTS----------RFNSRLQERIRKSEALT-AGNTGLTLNIAANYGGRWDIVQ 153 (253)
T ss_dssp T--HHH-----HHHHHHHTTCEEEEESCGG----------GSCHHHHHHHHHHHHHH-TTCCSCEEEEESSCCHHHHHHH
T ss_pred H--HHH-----HHHHHHHCCeEEEEEeehh----------hCCHHHHHHHHHHHHHh-ccCCCeEEEEEecCCCHHHHHH
Confidence 1 210 0111112344566666542 34555556666666665 7899999999999999999999
Q ss_pred HHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHH
Q psy4416 203 SIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNI 274 (290)
Q Consensus 203 a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~a 274 (290)
|+|+++++. +++++| .++++|+.. +.|||||+||||||.|||||||||++||||||++.+ |||++.+|.+|
T Consensus 154 Avr~ia~~v~~g~l~~~~I~e~~i~~~L~t~-~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyFtd~lWPdF~~~dl~~A 232 (253)
T 3sgv_B 154 GVRQLAEKVQQGNLQPDQIDEEMLNQHVCMH-ELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGA 232 (253)
T ss_dssp HHHHHHHHHHHTSSCGGGCCHHHHHTTSTTT-TSCCCCEEEEESSCCCCTTSCSGGGTTCEEEECCSCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCChhhCCHHHHHHhhccc-CCCCCcEEEEecCCCcccCchHHHHcCEEEEECCCCCccCCHHHHHHH
Confidence 999998763 455554 678888874 899999999999999999999999999999999997 99999999999
Q ss_pred HHHHhhhhhccCCC
Q psy4416 275 LRKYSKCEQRYGKP 288 (290)
Q Consensus 275 L~~Ys~~~~R~Gk~ 288 (290)
|.+||+|+||||+.
T Consensus 233 i~~yq~R~RRfG~~ 246 (253)
T 3sgv_B 233 LNAFANRERRFGGT 246 (253)
T ss_dssp HHHHHHHC------
T ss_pred HHHHHhhhccCCCC
Confidence 99999999999985
No 4
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.2e-55 Score=392.15 Aligned_cols=209 Identities=18% Similarity=0.252 Sum_probs=171.1
Q ss_pred cCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhH
Q psy4416 59 NNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFE 121 (290)
Q Consensus 59 ~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~ 121 (290)
+.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +++.
T Consensus 20 ~~~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm--~L~~ 97 (256)
T 4h8e_A 20 DSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIM--NLPV 97 (256)
T ss_dssp CTTCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHH--HHHH
T ss_pred cCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHH--HHHH
Confidence 3568999999999999 3799999999999999999999999999 6899998 566666 5554
Q ss_pred HhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHH
Q psy4416 122 EFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLL 201 (290)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv 201 (290)
+. +.. .++....+..++.+.|+.. .+|++....+...++.| ++|++++||+|++||||+||+
T Consensus 98 ~~--l~~-----~~~~l~~~~vrvr~iGd~~----------~Lp~~~~~~i~~ae~~T-~~n~~~~lnia~~YggR~EI~ 159 (256)
T 4h8e_A 98 NF--LKT-----FLPELIEKNVKVETIGFTD----------KLPKSTIEAINNAKEKT-ANNTGLKLIFAINYGGRAELV 159 (256)
T ss_dssp HH--HHH-----HHHHHHHTTCEEEEESCGG----------GSCHHHHHHHHHHHHHT-TTCCSCEEEEEEEECHHHHHH
T ss_pred HH--HHH-----HHHHHHHcCeEEEEecCcc----------cCCHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCHHHHH
Confidence 32 210 0111122344666666542 34555556666666665 789999999999999999999
Q ss_pred HHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHH
Q psy4416 202 NSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKN 273 (290)
Q Consensus 202 ~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~ 273 (290)
+|+|+++++. ++++|| .++++|+.. +.|||||+||||||.|||||||||++||||||+|.+ |||++.+|.+
T Consensus 160 ~Avr~i~~~v~~g~l~~~~I~e~~i~~~L~t~-~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~dl~~ 238 (256)
T 4h8e_A 160 HSIKNMFDELHQQGLNSDIIDETYINNHLMTK-DYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIK 238 (256)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCHHHHHTTSTTT-TSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCChhhCCHHHHHHhCCCC-CCCCCcEEEEcCCCCcccCchHHHHcCeEEEECCCCCccCCHHHHHH
Confidence 9999998763 566554 677888874 899999999999999999999999999999999997 9999999999
Q ss_pred HHHHHhhhhhccCCC
Q psy4416 274 ILRKYSKCEQRYGKP 288 (290)
Q Consensus 274 aL~~Ys~~~~R~Gk~ 288 (290)
||.+||+|+||||+.
T Consensus 239 Ai~~yq~R~RRfG~~ 253 (256)
T 4h8e_A 239 CIKIYQSRQRRFGGL 253 (256)
T ss_dssp HHHHHHHCCCCTTCC
T ss_pred HHHHHHhhhhccCCC
Confidence 999999999999986
No 5
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=100.00 E-value=1.6e-54 Score=381.00 Aligned_cols=204 Identities=15% Similarity=0.274 Sum_probs=167.9
Q ss_pred CCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHHh
Q psy4416 61 WKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEEF 123 (290)
Q Consensus 61 ~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~~ 123 (290)
-++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +++.+.
T Consensus 4 m~~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm--~L~~~~ 81 (225)
T 3ugs_B 4 MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIF--ELLDRC 81 (225)
T ss_dssp CCCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHH--HHHHHH
T ss_pred CCCCCeEEEeccCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHH--HHHHHH
Confidence 47899999999999 3799999999999999999999999999 6899998 566666 555432
Q ss_pred hhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHH
Q psy4416 124 NKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNS 203 (290)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a 203 (290)
+.. .++....+..++.+.|+.. ++|++....+...++.| ++|++++||+|.+||||+||++|
T Consensus 82 --l~~-----~~~~l~~~~vrvr~iGd~~----------~Lp~~~~~~i~~ae~~T-~~n~~~~lnia~~YggR~EI~~A 143 (225)
T 3ugs_B 82 --LDE-----ALEKFEKNNVRLRAIGDLS----------RLEDKVREKITLVEEKT-KHCDALCVNLAISYGARDEIIRA 143 (225)
T ss_dssp --HHH-----HHHHSTTTTEEEEEESCGG----------GSCHHHHHHHHHHHHHH-TTCCSEEEEEEEEECHHHHHHHH
T ss_pred --HHH-----HHHHHHHCCcEEEEEeChH----------hCCHHHHHHHHHHHHHh-cCCCCcEEEEeeCCCCHHHHHHH
Confidence 220 1112233445666666542 35555556666776665 78999999999999999999999
Q ss_pred HHHHHhccCCcchHHHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHHHHHhhhh
Q psy4416 204 IVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNILRKYSKCE 282 (290)
Q Consensus 204 ~r~l~~~~~~~~di~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL~~Ys~~~ 282 (290)
+|++++....+++..++++|+. . |||||+||||||.|||||||||++||||||++.+ |||+..+|.+||.+||+|+
T Consensus 144 ~~~iv~~g~~I~e~~i~~~L~t--~-PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~~l~~Ai~~y~~R~ 220 (225)
T 3ugs_B 144 AKRVIEKKLELNEENLTQNLDL--P-LDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRE 220 (225)
T ss_dssp HHHHHHTTCCCSHHHHHHTSSS--C-SCCSEEEEESSCCSCTTSSTTTTTTCEEEEECSCSTTCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCcCCHHHHHHhcCC--C-CCCCEEEEeCCcccccCcchhhhhceEEEECCCCCccCCHHHHHHHHHHHHhhh
Confidence 9999776534555578888885 3 9999999999999999999999999999999997 9999999999999999999
Q ss_pred hccCC
Q psy4416 283 QRYGK 287 (290)
Q Consensus 283 ~R~Gk 287 (290)
||||+
T Consensus 221 RRfG~ 225 (225)
T 3ugs_B 221 RTFGK 225 (225)
T ss_dssp CCTTC
T ss_pred ccCCC
Confidence 99996
No 6
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=100.00 E-value=6.5e-55 Score=391.36 Aligned_cols=212 Identities=17% Similarity=0.252 Sum_probs=147.3
Q ss_pred hhhcCCCCC----cEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhh
Q psy4416 56 TLINNWKKP----NHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAI 114 (290)
Q Consensus 56 ~v~~~~kiP----~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l 114 (290)
.+++.+++| +||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|
T Consensus 6 ~~l~~~~iP~~~~~HVAiImDGN~RwAk~~gl~r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~L 85 (253)
T 3qas_B 6 TQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL 85 (253)
T ss_dssp -------CCTTCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC-------------
T ss_pred cccccCCCCCCCCCEEEEEecCCHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHH
Confidence 345567899 9999999998 2589999999999999999999999999 6899997 44445
Q ss_pred ccchhhHHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCC
Q psy4416 115 KNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRK 194 (290)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~y 194 (290)
+ +++.+. +.. .+++...+..++.+.|+.. .+|.+....+...++.| +++++++||+|++|
T Consensus 86 m--~l~~~~--l~~-----~~~~l~~~~vrlr~iG~~~----------~lp~~~~~~i~~a~~~T-~~n~~l~lnia~~Y 145 (253)
T 3qas_B 86 M--ELFVWA--LDS-----EVKSLHRHNVRLRIIGDTS----------RFNSRLQERIRKSEALT-AGNTGLTLNIAANY 145 (253)
T ss_dssp ------CTH--HHH-----HHHHHHHTTCEEEEESCCT----------TSCHHHHHHHHHHHHHH-TTCCSCEEEEESSC
T ss_pred H--HHHHHH--HHH-----HHHHHHHCCeEEEEeCChH----------hCCHHHHHHHHHHHHHh-cCCCceEEEEEecC
Confidence 4 333211 110 0011112344566666432 23334334455555554 78999999999999
Q ss_pred CcHHHHHHHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCC
Q psy4416 195 QCESDLLNSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDI 266 (290)
Q Consensus 195 dGr~eIv~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~ 266 (290)
|||+||++|+|+++++. ++++|+ .++++|+.. +.|||||+|||||+.|||||||||++||||||++.+ |||
T Consensus 146 gGR~EIv~A~r~l~~~v~~g~l~~~~I~e~~i~~~L~t~-~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF 224 (253)
T 3qas_B 146 GGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMH-ELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDF 224 (253)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCGGGCCHHHHHTTSTTT-TSCCCCEEEECSSCCCCTTSCSGGGTTCEEEECCSCGGGC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCChHHCCHHHHHHhhccC-CCCCCcEEEEcCCCccccCCchhhhcCEEEEECCCCCCcC
Confidence 99999999999998762 555554 678888874 899999999999999999999999999999999997 999
Q ss_pred CHHHHHHHHHHHhhhhhccCCC
Q psy4416 267 SASKFKNILRKYSKCEQRYGKP 288 (290)
Q Consensus 267 ~~~~f~~aL~~Ys~~~~R~Gk~ 288 (290)
++.+|.+||.+||+|+||||+.
T Consensus 225 ~~~~~~~Al~~y~~R~RRfG~~ 246 (253)
T 3qas_B 225 DEQDFEGALNAFANRERRFGGT 246 (253)
T ss_dssp CHHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHhcCCcCCCCC
Confidence 9999999999999999999985
No 7
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=100.00 E-value=1e-54 Score=394.92 Aligned_cols=210 Identities=14% Similarity=0.210 Sum_probs=168.3
Q ss_pred hcCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhh
Q psy4416 58 INNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLF 120 (290)
Q Consensus 58 ~~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~ 120 (290)
.+.+++|+||||||||| ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +++
T Consensus 50 ~~~~~iP~HVAIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm--~L~ 127 (284)
T 2vg3_A 50 IPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM--GFN 127 (284)
T ss_dssp CCTTTSCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHH--HHH
T ss_pred cccCCCCCEEEEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHH--HHH
Confidence 34568999999999998 2689999999999999999999999999 7899998 556666 554
Q ss_pred HHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHH
Q psy4416 121 EEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDL 200 (290)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eI 200 (290)
.+. +.. .+.+...+..++.+.|+.. .++.+....++..++.| ++|++++||+|++||||+||
T Consensus 128 ~~~--l~~-----~~~~l~~~~vrvrviG~~~----------~lp~~~~~~i~~ae~~T-~~n~~l~Lnia~~YgGR~EI 189 (284)
T 2vg3_A 128 RDV--VRR-----RRDTLKKLGVRIRWVGSRP----------RLWRSVINELAVAEEMT-KSNDVITINYCVNYGGRTEI 189 (284)
T ss_dssp HHH--HHH-----HHHHHHHTTEEEEEESCCT----------TSCHHHHHHHHHHHHHH-TTCCSEEEEEEEEECHHHHH
T ss_pred HHH--HHH-----HHHHHHHcCeEEEEeCChh----------hCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCHHHH
Confidence 432 210 0111112344566666542 23344444555555555 78999999999999999999
Q ss_pred HHHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHH
Q psy4416 201 LNSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFK 272 (290)
Q Consensus 201 v~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~ 272 (290)
++|+|++++++ ++++|| .++++|+.. +.|||||+||||||.|||||||||++||||||++.+ |||++.+|.
T Consensus 190 v~A~r~la~~v~~g~l~~~dI~e~~i~~~L~t~-~~PdPDLlIRTsGE~RLSnFLlWQ~aYsElyF~d~lWPdF~~~df~ 268 (284)
T 2vg3_A 190 TEATREIAREVAAGRLNPERITESTIARHLQRP-DIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLW 268 (284)
T ss_dssp HHHHHHHHHHHHTTSSCGGGCCHHHHHHHSSST-TCCCCSEEEECTTCCCCTTTTTTTTTTCEEEECCSCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHCCHHHHHHHhccC-CCCCCcEEEeCCCCccccCCCchhhcceEEEECCCCCCcCCHHHHH
Confidence 99999998762 455554 788999875 899999999999999999999999999999999997 999999999
Q ss_pred HHHHHHhhhhhccCCC
Q psy4416 273 NILRKYSKCEQRYGKP 288 (290)
Q Consensus 273 ~aL~~Ys~~~~R~Gk~ 288 (290)
+||.+||+|+||||+.
T Consensus 269 ~Al~~Yq~R~RRfG~~ 284 (284)
T 2vg3_A 269 AACEEYASRTRRFGSA 284 (284)
T ss_dssp HHHHHHHHSCCCSSCC
T ss_pred HHHHHHhccCCCCCCC
Confidence 9999999999999973
No 8
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=100.00 E-value=1.1e-51 Score=366.26 Aligned_cols=197 Identities=16% Similarity=0.232 Sum_probs=158.3
Q ss_pred CCCcEEEEEEeCCc----------------ccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHHh
Q psy4416 62 KKPNHLVLIIGEDV----------------ILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEEF 123 (290)
Q Consensus 62 kiP~HlAvImdgn~----------------~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~~ 123 (290)
++|+|||||||||. .|++++.+++.||.++||++||+|+|| +||||+. +++.|+ +++.+.
T Consensus 1 ~iP~HvAiImDGN~RwA~~~g~l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm--~l~~~~ 78 (227)
T 2vg0_A 1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALI--EIITDV 78 (227)
T ss_dssp CCCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHH--HHHHHH
T ss_pred CCCcEEEEEecCChHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHH--HHHHHH
Confidence 58999999999983 578999999999999999999999997 7999998 556666 555432
Q ss_pred hhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHH
Q psy4416 124 NKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNS 203 (290)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a 203 (290)
+.. .+.. .+..++.+.|+.. .+|++....++..++.| +++++++||+|++||||+||++|
T Consensus 79 --l~~-----~~~~--~~~vrv~~iG~~~----------~lp~~~~~~i~~~~~~T-~~n~~l~lnia~~YggR~eI~~A 138 (227)
T 2vg0_A 79 --VEE-----ICAP--ANHWSVRTVGDLG----------LIGEEPARRLRGAVEST-PEVASFHVNVAVGYGGRREIVDA 138 (227)
T ss_dssp --HHH-----HTCT--TTCCEEEEESCGG----------GSCHHHHHHHHHHHHTS-CSSCSCEEEEEEEECHHHHHHHH
T ss_pred --HHH-----Hhcc--ccCeEEEecCChh----------hCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCHHHHHHH
Confidence 220 0111 2334555555432 23444445555555554 78999999999999999999999
Q ss_pred HHHHHhc----cCCcch----H---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHH
Q psy4416 204 IVELGET----NLSVSD----T---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKF 271 (290)
Q Consensus 204 ~r~l~~~----~~~~~d----i---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f 271 (290)
+|+++++ .++++| | .++++|+.. +.|||||+|||||+.|||||||||++||||||++.+ |||++.+|
T Consensus 139 ~r~l~~~v~~g~l~~~~~~~~I~e~~i~~~L~t~-~~pdpDLlIRTsGe~RLSnFLlWQ~aysElyf~~~lWPdF~~~~~ 217 (227)
T 2vg0_A 139 VRALLSKELANGATAEELVDAVTVEGISENLYTS-GQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDF 217 (227)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHCCHHHHHHHSTTT-TSCCCSEEEECTTCCCCTTTTTTTTTTCEEEECSSCGGGCCHHHH
T ss_pred HHHHHHHHHcCCCChhHhhccCCHHHHHHhhccC-CCCCCcEEEEcCCCccccCcchHHHcCeEEEECCCCCCCCCHHHH
Confidence 9999876 255555 4 788889874 899999999999999999999999999999999996 99999999
Q ss_pred HHHHHHHhhh
Q psy4416 272 KNILRKYSKC 281 (290)
Q Consensus 272 ~~aL~~Ys~~ 281 (290)
.+||.+||+|
T Consensus 218 ~~Al~~y~~R 227 (227)
T 2vg0_A 218 LRALRDYSAR 227 (227)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999999975
No 9
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=43.46 E-value=52 Score=29.13 Aligned_cols=61 Identities=20% Similarity=0.068 Sum_probs=43.3
Q ss_pred hhhHhhhcCCCCCcEEEEEEeCCc-ccHHHHHHHHHHHHHhCCCEEEEEecCCCCCchhhHhhhc
Q psy4416 52 TLFLTLINNWKKPNHLVLIIGEDV-ILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIK 115 (290)
Q Consensus 52 ~~~~~v~~~~kiP~HlAvImdgn~-~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~lkr~~ll~~l~ 115 (290)
.++..|..++..| +||+|+-|++ .+..-+..-..-|.+.|| ...|.+.......++++.+.
T Consensus 16 ~~~~~v~~l~~~P-~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi--~~~~~lp~~~s~~ell~~I~ 77 (276)
T 3ngx_A 16 NLHGIIERSGLEP-SLKLIQIGDNEAASIYARAKIRRGKKIGI--AVDLEKYDDISMKDLLKRID 77 (276)
T ss_dssp HHHHHHHHTTCCC-EEEEEEESCCHHHHHHHHHHHHHHHHHTC--EEEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-cEEEEEeCCCHHHHHHHHHHHHHHHHCCe--EEEEECCCCCCHHHHHHHHH
Confidence 3555566565445 9999999985 455557788899999999 77888877666555444444
No 10
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=35.10 E-value=37 Score=24.34 Aligned_cols=35 Identities=9% Similarity=0.193 Sum_probs=28.7
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHHHHhCCCEEEE
Q psy4416 64 PNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSV 98 (290)
Q Consensus 64 P~HlAvImdgn~~g~~~l~~ll~Wc~~~GI~~lSl 98 (290)
|....+|--....-+..+.+++..|..+|+..|++
T Consensus 56 ~~~~V~I~aD~~~~y~~vv~vmd~l~~aG~~~v~l 90 (99)
T 2pfu_A 56 KDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGL 90 (99)
T ss_dssp CSSCEEEEECTTCCHHHHHHHHHHHHHTCCCCEEC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 55555556666788999999999999999999986
No 11
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine tetrahydrobiopterin, structural genomics, NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Probab=29.88 E-value=31 Score=29.60 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=23.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHHH
Q psy4416 66 HLVLIIGEDVILYNDITQIILWCMI 90 (290)
Q Consensus 66 HlAvImdgn~~g~~~l~~ll~Wc~~ 90 (290)
|||.|.+++-.|+.++++++.|...
T Consensus 120 hVaYiP~~kVvGLSKlaRiV~~far 144 (220)
T 1wur_A 120 HIGYIPDGKILGLSKFARIVDMFAR 144 (220)
T ss_dssp EEEEECSSEEECHHHHHHHHHHHHS
T ss_pred EEEEeCCCeeecHHHHHHHHHHHHc
Confidence 9999999999999999999999875
No 12
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A
Probab=28.73 E-value=30 Score=29.89 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=23.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHHH
Q psy4416 66 HLVLIIGEDVILYNDITQIILWCMI 90 (290)
Q Consensus 66 HlAvImdgn~~g~~~l~~ll~Wc~~ 90 (290)
|||.|.+++-.|+.++++++.|...
T Consensus 133 hVaYiP~gkViGLSKlaRiVd~far 157 (230)
T 1is8_A 133 HIGYLPNKQVLGLSKLARIVEIYSR 157 (230)
T ss_dssp EEEEECSEECCCHHHHHHHHHHHHS
T ss_pred EEEEcCCCeeccHHHHHHHHHHHhc
Confidence 9999999989999999999999875
No 13
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=22.27 E-value=1.5e+02 Score=23.34 Aligned_cols=30 Identities=3% Similarity=-0.117 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHHHHHhCCCEEEEEecCCCC
Q psy4416 76 ILYNDITQIILWCMIAGVSFVSVYDYKNRL 105 (290)
Q Consensus 76 ~g~~~l~~ll~Wc~~~GI~~lSlYd~sg~l 105 (290)
.|-+-+..++.|+.+.|++.|.+....+|.
T Consensus 136 ig~~ll~~l~~~a~~~g~~~i~l~v~~~N~ 165 (209)
T 3pzj_A 136 LATEAVFLLLKTAFELGYRRCEWRCDSRNA 165 (209)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEETTCH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeecCCCH
Confidence 355668889999999999999999988764
No 14
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* 4du6_A*
Probab=22.08 E-value=43 Score=28.75 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.7
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHHHH
Q psy4416 65 NHLVLIIGEDVILYNDITQIILWCMI 90 (290)
Q Consensus 65 ~HlAvImdgn~~g~~~l~~ll~Wc~~ 90 (290)
-|||.|.+++-.|+.++++++.|...
T Consensus 121 ~hVaYiP~~~VvGLSKlaRiv~~far 146 (221)
T 1a8r_A 121 ATVAYIPKDSVIGLSKINRIVQFFAQ 146 (221)
T ss_dssp EEEEECCSSEEECHHHHHHHHHHHHS
T ss_pred EEEEEecCCccccHHHHHHHHHHHHc
Confidence 39999999999999999999999875
Done!