RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4416
(290 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 5e-04
Identities = 38/208 (18%), Positives = 66/208 (31%), Gaps = 55/208 (26%)
Query: 25 IWTSLIYILNPLKLNKNLHNEIVNNKSTLFLTLINNWKKPN----HLVLI-----IGEDV 75
IW +I + +NK LH S L+ K + + + + +
Sbjct: 395 IWFDVIKSDVMVVVNK-LHK-----YS-----LVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 76 IL-------YNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTL 128
L YN +I Y + + H+ L I++ F + L
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH---IGHH--LKNIEHPERMTLFRMVFL 498
Query: 129 GFSF--NKL--TSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNY 184
F F K+ S + ILNTL+ K+Y I E +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQL--------KFYKPYICDNDPKYERLV----- 545
Query: 185 KTELNILSRKQCESDLLNS----IVELG 208
L+ L + E +L+ S ++ +
Sbjct: 546 NAILDFL--PKIEENLICSKYTDLLRIA 571
Score = 35.6 bits (81), Expect = 0.022
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 47/193 (24%)
Query: 65 NHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFN 124
+H+ GE Y DI + + V D S + EE +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM--------PKSILSK----EEID 52
Query: 125 KLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKW--S 182
+ ++ ++ + + TL + + + + ++ ++ N K+ S
Sbjct: 53 HII-------MSKDAVSGTLRLFWTLLSK---QEEMVQKFVEE------VLRINYKFLMS 96
Query: 183 NYKTELNILSRK-----QCESDLLNSIVELGETNLSVSDTIMKER--LQEKCPLPDPEVA 235
KTE S + L N + N+S +K R L E L P
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---L-RPAKN 152
Query: 236 IVIGRKLSSYGLL 248
++I G+L
Sbjct: 153 VLI------DGVL 159
Score = 31.0 bits (69), Expect = 0.58
Identities = 42/286 (14%), Positives = 87/286 (30%), Gaps = 85/286 (29%)
Query: 34 NPLKLN---KNLHNEIVNNKSTLFLTLINNWKKPNH--LVLIIG---------------E 73
NP +L+ +++ + L +NWK N L II +
Sbjct: 326 NPRRLSIIAESIRD---------GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 74 DVILYNDITQI------ILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLT 127
+ ++ I ++W V V N+L Y S ++ P + +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWF---DVIKSDVMVVVNKLHKY---SLVEKQPKESTISIPS 430
Query: 128 LGFSFNKLTSNSKTQDTLILNTLKTSKA-EPNGIHKYYADD-----IVGILNIIEENLKW 181
+ N I++ K + + + Y D I L IE +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 182 SNYKT---ELNILSRK--------QCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLP 230
+ ++ + L +K +LN++ +L K + + P
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL---------KFYKPYICDNDPKY 541
Query: 231 DPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILR 276
+ R +++ F ++ SK+ ++LR
Sbjct: 542 E--------RLVNAI----------LDFLPKIEENLICSKYTDLLR 569
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.077
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 28/124 (22%)
Query: 61 WKKP-NHLVLIIGE---DVILYNDITQIILWCMIAGVSFVSVYD-YKNRLSHYNLLSAIK 115
W + NH G D+++ N + I + G + + Y + + +K
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHF---GGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 116 NNPLFEEFNKLTLGFSFN------KLTSNSKTQDTLILNTLKTSKA-----EPNGI---H 161
+F+E N+ + ++F T TQ L L KA + G+
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQF--TQPALTL----MEKAAFEDLKSKGLIPAD 1756
Query: 162 KYYA 165
+A
Sbjct: 1757 ATFA 1760
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue
transglutaminase,acyltransferase; 2.50A {Pagrus major}
SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Length = 695
Score = 30.0 bits (67), Expect = 1.1
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 52 TLFLTLINNWKKPNHLVLIIGEDVILYNDITQIILWCMIAGVSF-----------VSVYD 100
+ + + N + H L + + YN + + V+ + D
Sbjct: 489 DVIVEVKNEGGRDAHAQLTMLAMAVTYNSLRRGECQRKTISVTVPAHKAHKEVMRLHYDD 548
Query: 101 YKNRLSHYNLL 111
Y +S ++L+
Sbjct: 549 YVRCVSEHHLI 559
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.3
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 148 NTLKTSKAEPNGIHKYYADDIVGILNI---IE 176
LK K + + K YADD L I +E
Sbjct: 20 QALK--KLQ-ASL-KLYADDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 2.5
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 219 MKERLQEKCPL--PD--PEVAI 236
+K +LQ L D P +AI
Sbjct: 22 LK-KLQASLKLYADDSAPALAI 42
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood
coagulation, mutant, W279F, oxyanion, transferase; 2.00A
{Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Length = 731
Score = 28.4 bits (63), Expect = 3.5
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 11/71 (15%)
Query: 52 TLFLTLINNWKKPNHLVLIIGEDVILYNDITQIILWCMIAGVSF-----------VSVYD 100
L +T NN + + ++ Y + + V+ + +
Sbjct: 534 KLSITFRNNSHNRYTITAYLSANITFYTGVPKAEFKKETFDVTLEPLSFKKEAVLIQAGE 593
Query: 101 YKNRLSHYNLL 111
Y +L L
Sbjct: 594 YMGQLLEQASL 604
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.412
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,324,718
Number of extensions: 242013
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 24
Length of query: 290
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,105,140
Effective search space: 808712580
Effective search space used: 808712580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)