RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4416
         (290 letters)



>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 228

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 7/116 (6%)

Query: 172 LNIIEENLKWSNYKTELNILSRKQCESDLLNSI------VELGETNLSVSDTIMKERLQE 225
                E L   N    LNI +      D++  +      V+ G       D  M  +   
Sbjct: 111 RIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVC 170

Query: 226 KCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSK 280
              L   ++ I  G +      L W I   E +  D  + D     F+  L  ++ 
Sbjct: 171 MHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFAN 226


>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Micrococcus luteus [TaxId: 1270]}
          Length = 229

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 229 LPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSK 280
           +PDPE+ I    +      L W    +EF   D ++ D +       +  Y  
Sbjct: 176 MPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQN 228


>d2gp4a1 c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase EDD
           {Shewanella oneidensis [TaxId: 70863]}
          Length = 190

 Score = 30.3 bits (68), Expect = 0.18
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 193 RKQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKL 242
            K  + DL+      GE +L VSDT +  R   +  L        +GR+L
Sbjct: 118 AKVQDGDLIRVDALTGELSLLVSDTELATRTATEIDLRHSRYG--MGREL 165


>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 25.0 bits (54), Expect = 9.6
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 13/82 (15%)

Query: 162 KYYADDIVGILNIIEENLKWSNYKTELN-ILSRKQCESDLLNSIVELGETNLSVSDTIMK 220
           +   +     L+I     +   Y  + +      Q ++             L++S T ++
Sbjct: 143 QELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTT--------KTRTLNISGTELR 194

Query: 221 ERLQEKCPLPD----PEVAIVI 238
            RL+    +P+    PEV  ++
Sbjct: 195 RRLRVGGEIPEWFSYPEVVKIL 216


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,094,927
Number of extensions: 49032
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 14
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)