BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4417
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 146/327 (44%), Gaps = 64/327 (19%)
Query: 4 PPHPLKKILGTGLSPCGLTVEQDANG-NLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
P P + ++ G + G + +G + I+ ILAG D G L+ GD IL VNG ++
Sbjct: 305 PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 364
Query: 63 SSPEDLQIEVVKSDGNIQFTIAPQ--------------------------GDDASLPIKP 96
+ Q + + TI Q ASL P
Sbjct: 365 RNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNP 424
Query: 97 V--CYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEP---TGPM 151
Y+R LF YD +D + L+F GD+L +++ D WWQA+ + T +
Sbjct: 425 KRGFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDI 482
Query: 152 GLVPSQELEERRKAFVPPEADYVHKIGICGTR-YIKQYNTL------------------- 191
G +PS+ ERR+ D+ G G + Y T+
Sbjct: 483 GFIPSKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGPTKD 542
Query: 192 QYNSTLMSRSFPD--------TTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYGEH 242
+ N L+S FPD TTRP RE E +G++Y F +SRE ME+DI+ HKF+E G++
Sbjct: 543 RANDDLLS-EFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQY 601
Query: 243 NGHLYGTHLDSIREVILSGKICVLDCS 269
N HLYGT + S+REV GK C+LD S
Sbjct: 602 NSHLYGTSVQSVREVAEQGKHCILDVS 628
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 34/147 (23%)
Query: 309 TTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKI 367
TTRP RE E +G++Y F +SRE ME+DI+ HKF+E G++N HLYGT + S+REV GK
Sbjct: 563 TTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 622
Query: 368 CVLDCSP---------------------------------VEEDIKRTLEESACLQRSYE 394
C+LD S EE ++ + + L++ +
Sbjct: 623 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT 682
Query: 395 RFIDKVIVNEDFDETFRTVIELLDTLS 421
++ + F+E + V +++ LS
Sbjct: 683 ECFSAIVEGDSFEEIYHKVKRVIEDLS 709
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 8 LKKILGTGLSPCGLTVEQDANGN--LIIARILAGSLIDKQGVLKVGDVILGVN 58
+K G G S G Q G+ + + +I+ G K G L++GD IL VN
Sbjct: 161 IKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 213
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 113/212 (53%), Gaps = 38/212 (17%)
Query: 87 GDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIE 146
G + K Y+R LF YD +DS LP + GL F GDIL ++N D WWQA+ +
Sbjct: 1 GPGSEFSQKRSLYVRALFDYDKTKDSGLPSQ--GLNFKFGDILHVINASDDEWWQARQVT 58
Query: 147 PTGP---MGLVPSQELEERRK--------------AFVP---PEADYVHKIGICGTRYIK 186
P G +G++PS+ E+++ ++ P E +Y + I G +
Sbjct: 59 PDGESDEVGVIPSKRRVEKKERARLKTVKFNSKVLSYEPVNQQEVNYTRPVIILGPMKDR 118
Query: 187 QYNTLQYNSTLMSRSFPD--------TTRPMRELEENGQNYWF-TSREVMERDIQDHKFL 237
N L+S FPD TTRP R+ E +G++Y F TSRE ME+DIQ+HKF+
Sbjct: 119 ------VNDDLIS-EFPDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFI 171
Query: 238 EYGEHNGHLYGTHLDSIREVILSGKICVLDCS 269
E G++N HLYGT + S+R V GK C+LD S
Sbjct: 172 EAGQYNNHLYGTSVQSVRAVAEKGKHCILDVS 203
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 309 TTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKI 367
TTRP R+ E +G++Y F TSRE ME+DIQ+HKF+E G++N HLYGT + S+R V GK
Sbjct: 138 TTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKH 197
Query: 368 CVLDCS 373
C+LD S
Sbjct: 198 CILDVS 203
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 109/198 (55%), Gaps = 26/198 (13%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLI---EPTGPM 151
K Y+R LF YDP D LP + GL F HGDIL + N D WWQA+ + +
Sbjct: 3 KRSLYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQI 60
Query: 152 GLVPSQELEER----RKAFVPPEADY-----VHKIGICGTRYIKQYNTLQ--YNSTLMSR 200
G+VPS+ ER R V E + V ++ I TR + L+ N L+S
Sbjct: 61 GIVPSKRRWERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGPLKDRINDDLIS- 119
Query: 201 SFPD--------TTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYGEHNGHLYGTHL 251
+PD TTRP RE E +G++Y F +SRE MERDIQ+H F+E G++N +LYGT +
Sbjct: 120 EYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSV 179
Query: 252 DSIREVILSGKICVLDCS 269
S+REV GK C+LD S
Sbjct: 180 ASVREVAEKGKHCILDVS 197
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 31/133 (23%)
Query: 309 TTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKI 367
TTRP RE E +G++Y F +SRE MERDIQ+H F+E G++N +LYGT + S+REV GK
Sbjct: 132 TTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKH 191
Query: 368 CVLDCS-------------PVEEDIK------------RTLEESACLQRSYERFIDKVIV 402
C+LD S PV IK R EE A +++YER I +
Sbjct: 192 CILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQA--KKTYERAIK---M 246
Query: 403 NEDFDETFRTVIE 415
++F E F V++
Sbjct: 247 EQEFGEYFTGVVQ 259
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 104/203 (51%), Gaps = 35/203 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEP---TGPMGLVP 155
Y+R LF YD +D + L+F GD+L +++ D WWQA+ + T +G +P
Sbjct: 3 YIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 60
Query: 156 SQELEERRKAFVPPEADYVHKIGICGTR-YIKQYNTL-------------------QYNS 195
S+ ERR+ D+ G G + Y T+ + N
Sbjct: 61 SKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGPTKDRAND 120
Query: 196 TLMSRSFPD--------TTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYGEHNGHL 246
L+S FPD TTRP RE E +G++Y F +SRE ME+DIQ HKF+E G++N HL
Sbjct: 121 DLLS-EFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL 179
Query: 247 YGTHLDSIREVILSGKICVLDCS 269
YGT + S+REV GK C+LD S
Sbjct: 180 YGTSVQSVREVAEQGKHCILDVS 202
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 34/147 (23%)
Query: 309 TTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKI 367
TTRP RE E +G++Y F +SRE ME+DIQ HKF+E G++N HLYGT + S+REV GK
Sbjct: 137 TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 196
Query: 368 CVLDCSP---------------------------------VEEDIKRTLEESACLQRSYE 394
C+LD S EE ++ + + L++ +
Sbjct: 197 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT 256
Query: 395 RFIDKVIVNEDFDETFRTVIELLDTLS 421
++ + F+E + V +++ LS
Sbjct: 257 ECFSAIVEGDSFEEIYHKVKRVIEDLS 283
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 104/203 (51%), Gaps = 35/203 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEP---TGPMGLVP 155
Y+R LF YD +D + L+F GD+L +++ D WWQA+ + T +G +P
Sbjct: 9 YIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 66
Query: 156 SQELEERRKAFVPPEADYVHKIGICGTR-YIKQYNTL-------------------QYNS 195
S+ ERR+ D+ G G + Y T+ + N
Sbjct: 67 SKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGPTKDRAND 126
Query: 196 TLMSRSFPD--------TTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYGEHNGHL 246
L+S FPD TTRP RE E +G++Y F +SRE ME+DIQ HKF+E G++N HL
Sbjct: 127 DLLS-EFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL 185
Query: 247 YGTHLDSIREVILSGKICVLDCS 269
YGT + S+REV GK C+LD S
Sbjct: 186 YGTSVQSVREVAEQGKHCILDVS 208
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 34/147 (23%)
Query: 309 TTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKI 367
TTRP RE E +G++Y F +SRE ME+DIQ HKF+E G++N HLYGT + S+REV GK
Sbjct: 143 TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 202
Query: 368 CVLDCSP---------------------------------VEEDIKRTLEESACLQRSYE 394
C+LD S EE ++ + + L++ +
Sbjct: 203 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT 262
Query: 395 RFIDKVIVNEDFDETFRTVIELLDTLS 421
++ + F+E + V +++ LS
Sbjct: 263 ECFSAIVEGDSFEEIYHKVKRVIEDLS 289
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 28/138 (20%)
Query: 309 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 368
TTRP ++ EENG+NY+F S + M +DI ++++LEYG H +YGT L++IR++ G I
Sbjct: 40 TTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIA 99
Query: 369 VLDCSPV----------------------------EEDIKRTLEESACLQRSYERFIDKV 400
+LD P +E ++R +ES LQR+Y + D
Sbjct: 100 ILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQRTYAHYFDLT 159
Query: 401 IVNEDFDETFRTVIELLD 418
I+N + DET R + E ++
Sbjct: 160 IINNEIDETIRHLEEAVE 177
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 180 CGTRYIKQYNTL-QYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLE 238
G R+IK NTL + + P TTRP ++ EENG+NY+F S + M +DI ++++LE
Sbjct: 16 VGRRHIK--NTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLE 73
Query: 239 YGEHNGHLYGTHLDSIREVILSGKICVLDCSPVGL 273
YG H +YGT L++IR++ G I +LD P L
Sbjct: 74 YGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQAL 108
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 25/135 (18%)
Query: 309 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 368
TTRP R+ EE+G+ Y F S E M R+I ++FLE+G + G+++GT +++ ++ KI
Sbjct: 54 TTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIA 113
Query: 369 VLDCSPVEEDIKRTLE-------------------------ESACLQRSYERFIDKVIVN 403
+LD P I RT E +S ++ Y + D +VN
Sbjct: 114 ILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVN 173
Query: 404 EDFDETFRTVIELLD 418
DET + + E D
Sbjct: 174 NGVDETLKKLQEAFD 188
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 203 PDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGK 262
P TTRP R+ EE+G+ Y F S E M R+I ++FLE+G + G+++GT +++ ++ K
Sbjct: 52 PYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNK 111
Query: 263 ICVLDCSPVGL 273
I +LD P L
Sbjct: 112 IAILDIEPQTL 122
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 191 LQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTH 250
Q +S++ S TTR R EE+G++Y+F +RE+M+RDI F+E+ E +G+LYGT
Sbjct: 25 FQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTS 84
Query: 251 LDSIREVILSGKICVLDCSPVGL 273
+++R V +ICVLD G+
Sbjct: 85 KEAVRAVQAMNRICVLDVDLQGV 107
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 299 CSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSI 358
S F S TTR R EE+G++Y+F +RE+M+RDI F+E+ E +G+LYGT +++
Sbjct: 29 SSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKEAV 88
Query: 359 REVILSGKICVLDC 372
R V +ICVLD
Sbjct: 89 RAVQAMNRICVLDV 102
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 38/152 (25%)
Query: 304 FFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVIL 363
F S TTR R E NG++Y F S + + I++++F+E+ + +G+ YG+ + S+++V
Sbjct: 32 FSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSK 91
Query: 364 SGKICVLD----------------------CSPVEEDIKRTLE--------------ESA 387
SGK C+LD P ED+K+ LE +A
Sbjct: 92 SGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 151
Query: 388 CLQRSYER--FIDKVIVNEDFDETFRTVIELL 417
+ +Y DKVIVN+D D+ ++ + + +
Sbjct: 152 QAELAYAETGAHDKVIVNDDLDKAYKELKDFI 183
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 201 SFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILS 260
S TTR R E NG++Y F S + + I++++F+E+ + +G+ YG+ + S+++V S
Sbjct: 33 SVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKS 92
Query: 261 GKICVLDCSPVGL 273
GK C+LD G+
Sbjct: 93 GKTCILDIDMQGV 105
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 38/152 (25%)
Query: 304 FFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVIL 363
F S TTR R E NG++Y F S + + I++++F+E+ + +G+ YG+ + S+++V
Sbjct: 31 FSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSK 90
Query: 364 SGKICVLD----------------------CSPVEEDIKRTLE--------------ESA 387
SGK C+LD P ED+K+ LE +A
Sbjct: 91 SGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150
Query: 388 CLQRSYER--FIDKVIVNEDFDETFRTVIELL 417
+ +Y DKVIVN+D D+ ++ + + +
Sbjct: 151 QAELAYAETGAHDKVIVNDDLDKAYKELKDFI 182
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 201 SFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILS 260
S TTR R E NG++Y F S + + I++++F+E+ + +G+ YG+ + S+++V S
Sbjct: 32 SVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKS 91
Query: 261 GKICVLDCSPVGL 273
GK C+LD G+
Sbjct: 92 GKTCILDIDMQGV 104
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 196 TLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIR 255
T S TTR RE E++G +Y+F SREV E+ I+D K LEY E+ G+ YGT L+ +
Sbjct: 34 TSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQAIKDGKXLEYAEYVGNYYGTPLEYVE 93
Query: 256 EVILSGKICVLD-----------CSPVGLFTFL 277
E + +G L+ P G+F FL
Sbjct: 94 EKLAAGVDIFLEIEVQGAXQVRKAXPEGIFIFL 126
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 279 GLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDH 338
G+ +GTV + + P S+ + S TTR RE E++G +Y+F SREV E+ I+D
Sbjct: 18 GVGKGTVREAV----FKDPETSFD-YSISXTTRLPREGEQDGVDYYFRSREVFEQAIKDG 72
Query: 339 KFLEYGEHNGHLYGTHLDSIREVILSG 365
K LEY E+ G+ YGT L+ + E + +G
Sbjct: 73 KXLEYAEYVGNYYGTPLEYVEEKLAAG 99
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 38/152 (25%)
Query: 304 FFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVIL 363
F TTR R E NG++Y F S + + I++++F+E+ + +G+ YG+ + S+++V
Sbjct: 47 FSVPSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSK 106
Query: 364 SGKICVLD----------------------CSPVEEDIKRTLE--------------ESA 387
SGK C+LD P ED+K+ LE +A
Sbjct: 107 SGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 166
Query: 388 CLQRSYER--FIDKVIVNEDFDETFRTVIELL 417
+ +Y DKVIVN+D D+ ++ + + +
Sbjct: 167 QAELAYAETGAHDKVIVNDDLDKAYKELKDFI 198
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 201 SFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILS 260
S P TTR R E NG++Y F S + + I++++F+E+ + +G+ YG+ + S+++V S
Sbjct: 48 SVPSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKS 107
Query: 261 GKICVLDCSPVGL 273
GK C+LD G+
Sbjct: 108 GKTCILDIDMQGV 120
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 279 GLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDH 338
G+ +GTV ++ + P S+ + S TTR MRE E +G +Y+F +R+ E I+D
Sbjct: 16 GVGKGTVRKRI----FEDPSTSYK-YSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDD 70
Query: 339 KFLEYGEHNGHLYGTHLDSIREVILSGKICVLDC 372
+F+EY E+ G+ YGT + +++ + G L+
Sbjct: 71 QFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEI 104
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 195 STLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSI 254
ST S TTR MRE E +G +Y+F +R+ E I+D +F+EY E+ G+ YGT + +
Sbjct: 31 STSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYV 90
Query: 255 REVILSGKICVLDCS-----------PVGLFTFL 277
++ + G L+ P LF FL
Sbjct: 91 KDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFL 124
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 279 GLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDH 338
G+ +GT+ K++ S F S TTR RE E NG +Y+F ++ ER +++
Sbjct: 22 GVGKGTLIKKVLS-----EFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEG 76
Query: 339 KFLEYGEHNGHLYGTHLDSIREVILSGKICVLD 371
+FLE+ ++ + YGT + GKIC+ +
Sbjct: 77 QFLEFDKYANNFYGTLKSEYDLAVGEGKICLFE 109
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 205 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 264
TTR RE E NG +Y+F ++ ER +++ +FLE+ ++ + YGT + GKIC
Sbjct: 47 TTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKIC 106
Query: 265 VLDCSPVGL 273
+ + + G+
Sbjct: 107 LFEXNINGV 115
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 18 PCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKS 75
P G+T++ + + +ARIL G +I +QG L VGD IL +NG NV+ S + LQ + ++
Sbjct: 25 PMGITLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET 84
Query: 76 DGNIQFTIAP 85
G I + P
Sbjct: 85 KGMISLKVIP 94
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 18 PCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSP--EDLQIEVVKS 75
P G+T++ + + I+ARI+ G +I +QG L VGD I +NG +V++ E LQ + +
Sbjct: 14 PMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREM 73
Query: 76 DGNIQFTIAP 85
G+I F I P
Sbjct: 74 RGSITFKIVP 83
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 279 GLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDH 338
G+ +GT+ KL+ P ++ F S TTR RE E+ G +Y+F + + E +++
Sbjct: 33 GVGKGTLIKKLLN---EFP--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87
Query: 339 KFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCS 373
FLEY + + YGT + KIC+ + +
Sbjct: 88 DFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMN 122
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 205 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 264
TTR RE E+ G +Y+F + + E +++ FLEY + + YGT + KIC
Sbjct: 58 TTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC 117
Query: 265 VLDCSPVGL 273
+ + + G+
Sbjct: 118 LFEMNINGV 126
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 18 PCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKS 75
P G+ ++ + + +ARIL G +I +QG L VGD IL +NG NV+ S + LQ + ++
Sbjct: 25 PMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET 84
Query: 76 DGNIQFTIAP 85
G I + P
Sbjct: 85 KGMISLKVIP 94
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk
P55 Subfamily Member 2
Length = 91
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV-SSPEDLQIEVVKSDGNIQFTI 83
G L+IARIL G ++ +QG+L VGD+I VNG+ V S P LQ + + G++ I
Sbjct: 29 GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNASGSVILKI 84
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+++ LF ++P+E LAF GD++ ++N+ DPNWW+ QL G+ PS
Sbjct: 6 FVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPS 53
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+++ LF ++P+E LAF GD++ ++N+ DPNWW+ QL G+ PS
Sbjct: 4 FVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPS 51
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+++ LF ++P+E LAF GD++ ++N+ DPNWW+ QL G+ PS
Sbjct: 4 FVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPS 51
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 83 IAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQA 142
+ P + A+ PVC + ++ Y E L+F+ G ++ ++N+ DP+WWQ
Sbjct: 20 LGPSSERATPAFHPVCQVIAMYDYAAN-------NEDELSFSKGQLINVMNKDDPDWWQG 72
Query: 143 QLIEPTGPMGLVPS 156
++ G GL PS
Sbjct: 73 EI---NGVTGLFPS 83
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 18 PCGLTVEQDAN-GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS--PEDLQIEVVK 74
P G T+++D G +I+ARI G D+ G++ VGD + VNG V PE++ + +
Sbjct: 16 PLGATIKKDEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQ 75
Query: 75 SDGNIQFTIAP 85
S G I F I P
Sbjct: 76 SQGAITFKIIP 86
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTG 149
Y++ LF +DP+ED L F GD + +++ DPNWW+ TG
Sbjct: 4 YVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGACHGQTG 47
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTG 149
Y++ LF +DP+ED L F GD + +++ DPNWW+ TG
Sbjct: 4 YVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGACHGQTG 47
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTG 149
Y++ LF +DP+ED L F GD + +++ DPNWW+ TG
Sbjct: 4 YVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGACHGQTG 47
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 88 DDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEP 147
D +P +P Y++ LF +DP+ED L F GD + +++ DPNWW+
Sbjct: 150 DIEQVPQQP-TYVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGACHGQ 201
Query: 148 TG 149
TG
Sbjct: 202 TG 203
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 121 LAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPSQELE 160
L+F GDIL++LN++ D NW++A+L G G +P +E
Sbjct: 17 LSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPKNYIE 54
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 180 CGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEY 239
CG + L+ + +S TTR R+ E+ G++Y+F RE R + + +E+
Sbjct: 38 CGKTTVAN-KLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEH 96
Query: 240 GEHNGHLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIP 291
E G+ YG ++ + + G +L G F F+ + E V+ ++P
Sbjct: 97 AEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMP 148
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 36/147 (24%)
Query: 307 SDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSG- 365
S TTR R+ E+ G++Y+F RE R + + +E+ E G+ YG ++ + + G
Sbjct: 60 SVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGV 119
Query: 366 -KICVLDCS--------------------PVEEDIKRTL--------------EESACLQ 390
+ V+D P E+++R L + A +
Sbjct: 120 STLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFE 179
Query: 391 RSYERFIDKVIVNEDFDETFRTVIELL 417
S+ D VIVNED +ET + +L
Sbjct: 180 ISHCEAYDYVIVNEDIEETADRISNIL 206
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 307 SDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGK 366
S TTR R E +G++Y+F + + + I FLE+ E G+ YGT ++I +V+ +G
Sbjct: 50 SHTTRQPRPGEVHGEHYFFVNHDEFKEXISRDAFLEHAEVFGNYYGTSREAIEQVLATGV 109
Query: 367 ICVLDC 372
LD
Sbjct: 110 DVFLDI 115
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 201 SFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILS 260
S TTR R E +G++Y+F + + + I FLE+ E G+ YGT ++I +V+ +
Sbjct: 48 SVSHTTRQPRPGEVHGEHYFFVNHDEFKEXISRDAFLEHAEVFGNYYGTSREAIEQVLAT 107
Query: 261 GKICVLDC 268
G LD
Sbjct: 108 GVDVFLDI 115
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 307 SDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGK 366
S TTR R E +G++Y+F + + + I FLE+ E G+ YGT ++I +V+ +G
Sbjct: 38 SHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGV 97
Query: 367 ICVLDC 372
LD
Sbjct: 98 DVFLDI 103
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 201 SFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILS 260
S TTR R E +G++Y+F + + + I FLE+ E G+ YGT ++I +V+ +
Sbjct: 36 SVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLAT 95
Query: 261 GKICVLDC 268
G LD
Sbjct: 96 GVDVFLDI 103
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 86 QGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLI 145
QG L + Y+R LF ++ ++ LP F GDIL+I ++ + WW A+
Sbjct: 123 QGSGVILRQEEAEYVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE-- 173
Query: 146 EPTGPMGLVPSQELEERRKA 165
+ G G++P +E+ R A
Sbjct: 174 DSEGKRGMIPVPYVEKYRPA 193
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 86 QGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLI 145
QG L + Y+R LF ++ ++ LP F GDIL+I ++ + WW A+
Sbjct: 125 QGSGVILRQEEAEYVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAEDS 177
Query: 146 EPTGPMGLVPSQELEERRKA 165
E G G++P +E+ R A
Sbjct: 178 E--GKRGMIPVPYVEKYRPA 195
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTG 149
++ LF +DP+ED L F GD + +++ DPNWW+ TG
Sbjct: 3 VQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGACHGQTG 45
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 3/36 (8%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
LAF+ G I+ +LN++DP+WW+ ++ +G +GL PS
Sbjct: 19 LAFSKGQIINVLNKEDPDWWKGEV---SGQVGLFPS 51
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158
Y+R LF ++ ++ LP F GDIL+I ++ + WW A+ + G G++P
Sbjct: 16 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMIPVPY 66
Query: 159 LEERRKA 165
+E+ R A
Sbjct: 67 VEKYRPA 73
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 86 QGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLI 145
QG L + Y+R LF ++ ++ LP F GDIL+I ++ + WW A+
Sbjct: 123 QGSGVILRQEEAEYVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAEDS 175
Query: 146 EPTGPMGLVPSQELEERRKA 165
E G G++P +E+ R A
Sbjct: 176 E--GKRGMIPVPYVEKYRPA 193
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
V Y+R LF ++ +D LP F GDIL+I ++ + WW A+ ++ G G++P
Sbjct: 1 VEYVRALFDFNGNDDEDLP-------FKKGDILKIRDKPEEQWWNAEDMD--GKRGMIPV 51
Query: 157 QELEERRKA 165
+E+ R +
Sbjct: 52 PYVEKCRPS 60
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+F+ G ++ ++N+ DP+WWQ ++ G GL PS
Sbjct: 35 LSFSKGQLINVMNKDDPDWWQGEI---NGVTGLFPS 67
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
V R L+T++P+ L +E GDI+ I + D NWW+ G GL+PS
Sbjct: 14 VKVFRALYTFEPRTPDELYIEE-------GDIIYITDXSDTNWWKGT---SKGRTGLIPS 63
Query: 157 QELEERRKAFVPP 169
+ E+ ++ P
Sbjct: 64 NYVAEQAESIDNP 76
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQEL 159
R L+T++P+ P + L F GDI+ I + D NWW+ G GL+PS +
Sbjct: 10 FRALYTFEPR----TPDE---LYFEEGDIIYITDMSDTNWWKGT---SKGRTGLIPSNYV 59
Query: 160 EER 162
E+
Sbjct: 60 AEQ 62
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+R L+ ++ ED+ L F HG+++ +L+ D NWWQ + T GL PS
Sbjct: 8 VRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQGENHRGT---GLFPS 54
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
V R L+T++P+ P + L F GDI+ I + D NWW+ G GL+PS
Sbjct: 3 VKVFRALYTFEPR----TPDE---LYFEEGDIIYITDMSDTNWWKGT---SKGRTGLIPS 52
Query: 157 QELEER 162
+ E+
Sbjct: 53 NYVAEQ 58
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158
Y+R LF ++ ++ LP F GDIL+I ++ + WW A+ + G G++P
Sbjct: 5 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMIPVPY 55
Query: 159 LEE 161
+E+
Sbjct: 56 VEK 58
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158
Y+R LF ++ ++ LP F GDIL+I ++ + WW A+ + G G++P
Sbjct: 3 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMIPVPY 53
Query: 159 LEE 161
+E+
Sbjct: 54 VEK 56
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158
Y+R LF ++ ++ LP F GDIL+I ++ + WW A+ + G G++P
Sbjct: 3 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMIPVPY 53
Query: 159 LEE 161
+E+
Sbjct: 54 VEK 56
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158
Y+R LF ++ ++ LP F GDIL+I ++ + WW A+ + G G++P
Sbjct: 2 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMIPVPY 52
Query: 159 LEE 161
+E+
Sbjct: 53 VEK 55
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158
Y+R LF ++ ++ LP F GDIL+I ++ + WW A+ + G G++P
Sbjct: 5 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMIPVPY 55
Query: 159 LEE 161
+E+
Sbjct: 56 VEK 58
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+R ++ ++ ED+ L F G+I+ +L+ DPNWW+ E +GL PS
Sbjct: 20 VRAIYDFEAAEDN-------ELTFKAGEIITVLDDSDPNWWKG---ETHQGIGLFPS 66
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158
Y+R LF ++ ++ LP F GDIL+I ++ + WW A+ + G G++P
Sbjct: 3 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMIPVPY 53
Query: 159 LEE 161
+E+
Sbjct: 54 VEK 56
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 21 LSFHKGEKFQILNSSEGDWWEARSL-TTGETGYIPS 55
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 20 LSFHKGEKFQILNSSEGDWWEARSL-TTGETGYIPS 54
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 18 PCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSD- 76
P G TV + + ++II+RI+ G +K G+L GD +L +NG + + ++ + SD
Sbjct: 38 PLGATVRNEMD-SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM 96
Query: 77 -GNIQFTIAPQGDDAS 91
G + F + P +S
Sbjct: 97 HGTLTFVLIPSSGPSS 112
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+R L+ ++ ED+ L F HG+I+ +L+ D NWW+ E +GL PS
Sbjct: 20 VRALYDFEAVEDN-------ELTFKHGEIIIVLDDSDANWWKG---ENHRGIGLFPS 66
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN-WWQAQLIEPTGPMGLVPSQE 158
M L+ YDP+E S E L F GDI+ + + D + ++ +L G GLVPS
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGEL---NGQKGLVPSNF 66
Query: 159 LEE 161
LEE
Sbjct: 67 LEE 69
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 19 EDDLSFHKGEKFQILNSSEGDWWEARSL-TTGETGYIPS 56
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 36.6 bits (83), Expect = 0.026, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 29 EDDLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPS 66
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 36.6 bits (83), Expect = 0.026, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 121 LAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPSQELEER 162
L+F GDIL++LN++ D NW++A+L G G +P +E +
Sbjct: 17 LSFKRGDILKVLNEESDQNWYKAEL---NGKDGFIPKNYIEMK 56
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 29 EDDLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPS 66
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 36.6 bits (83), Expect = 0.028, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 33 IARILAGSLIDKQGVLKVGDVILGVNGEN-VSSPEDLQIEVVKSDG-NIQFTIAPQ 86
I RI+ GS D+ LKVGD IL VNG++ ++ P ++++K G ++ I PQ
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ 102
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
Length = 80
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 17/84 (20%)
Query: 90 ASLPIKP--VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDP-----NWWQA 142
S PI P + + R L+ + P+ E+ +A GD++ IL++KDP +WW+
Sbjct: 5 GSEPIDPSKLEFARALYDFVPEN------PEMEVALKKGDLMAILSKKDPLGRDSDWWKV 58
Query: 143 QLIEPTGPMGLVPSQELE--ERRK 164
+ G +G +P +E +RRK
Sbjct: 59 R--TKNGNIGYIPYNYIEIIKRRK 80
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 15 EDDLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPS 52
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 19 EDDLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPS 56
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQI-E 71
G+GL G + +++ I+ G L D+ G L+ GD IL + G NV Q+ +
Sbjct: 25 GSGL---GFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQ 81
Query: 72 VVKSDGN-IQFTIA--PQGD 88
V+++ GN ++ +A P GD
Sbjct: 82 VLRNCGNSVRMLVARDPAGD 101
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 121 LAFNHGDILQILN-QKDPNWWQAQLIEPTGPMGLVPSQELEER 162
L+F G IL+ILN + D NW++A+L G GL+PS +E +
Sbjct: 17 LSFRKGQILKILNMEDDSNWYRAEL---DGKEGLIPSNYIEMK 56
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 18 EDDLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPS 55
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 37/149 (24%)
Query: 307 SDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGK 366
S TTRP R ++ G +Y+F + +++ FLE+ YGT D + + +G+
Sbjct: 39 SHTTRPKRPGDQEGVDYFFIDETRFQAXVKEGAFLEHATIYERHYGTEKDWVLRQLKAGR 98
Query: 367 ICVLDC--------------------------SPVEEDIKRTLEESACLQRS-------- 392
+L+ + E IKR +++A +++
Sbjct: 99 DVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEX 158
Query: 393 --YERFIDKVIVNEDFDETFRTVIELLDT 419
Y+ F D ++VN++FD+ + +I ++
Sbjct: 159 AHYKEF-DYLVVNDNFDQAVQNLIHIISA 186
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 201 SFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILS 260
S TTRP R ++ G +Y+F + +++ FLE+ YGT D + + +
Sbjct: 37 SISHTTRPKRPGDQEGVDYFFIDETRFQAXVKEGAFLEHATIYERHYGTEKDWVLRQLKA 96
Query: 261 GKICVLDCSPVG 272
G+ +L+ G
Sbjct: 97 GRDVLLEIDWQG 108
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 121 LAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPSQELEER 162
L+F GDIL++LN++ D NW++A+L G G +P +E +
Sbjct: 26 LSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPKNYIEMK 65
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 14 EDDLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPS 51
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 15 EDDLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPS 52
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 15 EDDLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPS 52
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 14 EDDLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPS 51
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSP-EDLQIEVVKSDG 77
++I++I G D+ L VGD IL VNGE++SS D ++ +K G
Sbjct: 28 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG 75
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In
Complex With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSP-EDLQIEVVKSDG 77
++I++I G D+ L VGD IL VNGE++SS D ++ +K G
Sbjct: 28 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG 75
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSP-EDLQIEVVKSDG 77
++I++I G D+ L VGD IL VNGE++SS D ++ +K G
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG 79
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 19 EDDLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPS 56
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 36.2 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F+ G+ QILN + +WW+A+ + TG G +PS
Sbjct: 17 EDDLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPS 54
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 35.8 bits (81), Expect = 0.043, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 17/84 (20%)
Query: 90 ASLPIKP--VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDP-----NWWQA 142
S PI P + + R L+ + P+ E+ +A GD++ IL++KDP +WW+
Sbjct: 5 GSEPIDPSKLEFARALYDFVPEN------PEMEVALKKGDLMAILSKKDPLGRDSDWWKV 58
Query: 143 QLIEPTGPMGLVPSQELE--ERRK 164
+ G +G +P +E +RRK
Sbjct: 59 R--TKNGNIGYIPYNYIEIIKRRK 80
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 35.8 bits (81), Expect = 0.045, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 121 LAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPSQELEERRKAFVP 168
L+ GDI++ILN+K WW+ ++ G +G PS +EE ++P
Sbjct: 22 LSLKEGDIIKILNKKGQQGWWRGEIY---GRIGWFPSNYVEEDYSEYLP 67
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 35.8 bits (81), Expect = 0.052, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+F G+ QI+N + +WW+A+ I TG G +PS
Sbjct: 44 LSFKKGERFQIINNTEGDWWEARSI-ATGKSGYIPS 78
>pdb|3GGE|A Chain A, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|B Chain B, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|C Chain C, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
Length = 95
Score = 35.8 bits (81), Expect = 0.053, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
GLT+ + G I RI G +ID + VGD I +NGEN+
Sbjct: 19 GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENI 61
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+F G+ QI+N + +WW+A+ I TG G +PS
Sbjct: 22 LSFKKGERFQIINNTEGDWWEARSI-ATGKNGYIPS 56
>pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core In Complex With
Alpha1 Interaction Domain
pdb|1T3S|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core
Length = 337
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 95 KPVCY-MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGL 153
KPV + +R +Y + +P + ++F D L + + + +WW +L++ +G
Sbjct: 35 KPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGF 94
Query: 154 VPSQ-ELEERR 163
+PS+ +LE R
Sbjct: 95 IPSRVKLENMR 105
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 35.4 bits (80), Expect = 0.058, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F G+ LQI+N + +WW A + TG G +PS
Sbjct: 21 ETDLSFKKGERLQIVNNTEGDWWLAHSLT-TGQTGYIPS 58
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMG 152
P+ V + R L+ ++ E E L F G+++++L+ +P+WW +L +G
Sbjct: 1 PLGSVRWARALYDFEALE-------EDELGFRSGEVVEVLDSSNPSWWTGRL---HNKLG 50
Query: 153 LVPS 156
L P+
Sbjct: 51 LFPA 54
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 35.4 bits (80), Expect = 0.071, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F G+ LQI+N + +WW A + TG G +PS
Sbjct: 21 ETDLSFKKGERLQIVNNTEGDWWLAHSLT-TGQTGYIPS 58
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 35.0 bits (79), Expect = 0.073, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F G+ LQI+N + +WW A + TG G +PS
Sbjct: 16 ETDLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPS 53
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 35.0 bits (79), Expect = 0.074, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 7 PLKKILGTGLSPCGLTVEQDANGN-LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSP 65
P K IL G + G + +G + ++ ILAG D G L+ GD IL VNG N+ +
Sbjct: 16 PRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNA 75
Query: 66 EDLQIEVVKSDGNIQFTIAPQ 86
Q TI Q
Sbjct: 76 THEQAAAALKRAGQSVTIVAQ 96
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 35.0 bits (79), Expect = 0.074, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 7 PLKKILGTGLSPCGLTVEQDANGN-LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSP 65
P K IL G + G + +G + ++ ILAG D G L+ GD IL VNG N+ +
Sbjct: 13 PRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNA 72
Query: 66 EDLQIEVVKSDGNIQFTIAPQ 86
Q TI Q
Sbjct: 73 THEQAAAALKRAGQSVTIVAQ 93
>pdb|1VYU|A Chain A, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
pdb|1VYU|B Chain B, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
Length = 351
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 95 KPVCY-MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGL 153
KPV + +R +Y D P + G+ F D L I + +WW +L++ G +
Sbjct: 43 KPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAF 102
Query: 154 VPS-QELEERR 163
+PS Q LE R
Sbjct: 103 IPSPQRLESIR 113
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F G+ LQI+N + +WW A + TG G +PS
Sbjct: 16 ETDLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPS 53
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F G+ LQI+N + +WW A + TG G +PS
Sbjct: 16 ETDLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPS 53
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 35.0 bits (79), Expect = 0.079, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 4 PPHPLKKILGTGLSPCGLTVEQDANGN-LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
P P + ++ G + G + +G + I+ ILAG D G L+ GD IL VNG ++
Sbjct: 12 PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 71
Query: 63 SSPEDLQIEVVKSDGNIQFTIAPQ 86
+ Q + + TI Q
Sbjct: 72 RNASHEQAAIALKNAGQTVTIIAQ 95
>pdb|1VYT|A Chain A, Beta3 Subunit Complexed With Aid
pdb|1VYT|B Chain B, Beta3 Subunit Complexed With Aid
Length = 351
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 95 KPVCY-MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGL 153
KPV + +R +Y D P + G+ F D L I + +WW +L++ G +
Sbjct: 43 KPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAF 102
Query: 154 VPS-QELEERR 163
+PS Q LE R
Sbjct: 103 IPSPQRLESIR 113
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F G+ LQI+N + +WW A + TG G +PS
Sbjct: 16 ETDLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPS 53
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F G+ LQI+N + +WW A + TG G +PS
Sbjct: 99 ETDLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPS 136
>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav2.2 I-Ii Linker
Length = 339
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 95 KPVCY-MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGL 153
KPV + +R +Y + +P + ++F D L + + + +WW +L++ +G
Sbjct: 37 KPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGF 96
Query: 154 VPS 156
+PS
Sbjct: 97 IPS 99
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSP-EDLQIEVVKSDGN 78
++I++I G D+ L VGD IL VNGE++SS D ++ +K G
Sbjct: 105 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGK 153
>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker
Length = 337
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 95 KPVCY-MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGL 153
KPV + +R +Y + +P + ++F D L + + + +WW +L++ +G
Sbjct: 35 KPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGF 94
Query: 154 VPS 156
+PS
Sbjct: 95 IPS 97
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 34.7 bits (78), Expect = 0.095, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 4 PPHPLKKILGTGLSPCGLTVEQDANGN-LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
P P + ++ G + G + +G + I+ ILAG D G L+ GD IL VNG ++
Sbjct: 12 PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 71
Query: 63 SSPEDLQIEVVKSDGNIQFTIAPQ 86
+ Q + + TI Q
Sbjct: 72 RNASHEQAAIALKNAGQTVTIIAQ 95
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 34.7 bits (78), Expect = 0.098, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F G+ LQI+N + +WW A + TG G +PS
Sbjct: 14 ETDLSFKKGERLQIVNNTEGDWWLAHSLT-TGRTGYIPS 51
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
E L+F G+ LQI+N + +WW A + TG G +PS
Sbjct: 17 ETDLSFKKGERLQIVNNTEGDWWLAHSLT-TGQTGYIPS 54
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 121 LAFNHGDILQILN-QKDPNWWQAQLIEPTGPMGLVPSQELEERR 163
L GD + IL+ +K +WW QL++ +G GLVP+Q +E R
Sbjct: 23 LTIKSGDKVYILDDKKSKDWWMCQLVD-SGKSGLVPAQFIEPVR 65
>pdb|1VYV|A Chain A, Beta4 Subunit Of Ca2+ Channel
pdb|1VYV|B Chain B, Beta4 Subunit Of Ca2+ Channel
Length = 359
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 95 KPVCY-MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGL 153
KPV + ++ +Y D +P ++F+ D L I + + +WW +L++ +G
Sbjct: 42 KPVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGF 101
Query: 154 VPSQ--------ELEERRKAF 166
+PS + E++RK F
Sbjct: 102 IPSPLRLENIRIQQEQKRKRF 122
>pdb|1T0J|A Chain A, Crystal Structure Of A Complex Between Voltage-Gated
Calcium Channel Beta2a Subunit And A Peptide Of The
Alpha1c Subunit
Length = 132
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 95 KPVCY-MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGL 153
KPV + +R Y ++ +P + ++F D L + + + +WW +L++ +G
Sbjct: 45 KPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGF 104
Query: 154 VPSQ-ELEERR 163
+PS +LE R
Sbjct: 105 IPSPVKLENMR 115
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 4 PPHPLKKILGTGLSPCGLTVEQDANGN-LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
P P + ++ G + G + G + I+ ILAG D G L+ GD IL VNG ++
Sbjct: 9 PREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 68
Query: 63 SSPEDLQIEVVKSDGNIQFTIAPQ 86
+ Q + + TI Q
Sbjct: 69 RNASHEQAAIALKNAGQTVTIIAQ 92
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+F+ G+ QILN + +WW+ + + TG G +PS
Sbjct: 24 LSFHKGEKFQILNSSEGDWWEVRSL-TTGETGYIPS 58
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 4 PPHPLKKILGTGLSPCGLTVEQDANGN-LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
P P + ++ G + G + G + I+ ILAG D G L+ GD IL VNG ++
Sbjct: 4 PREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 63
Query: 63 SSPEDLQIEVVKSDGNIQFTIAPQ 86
+ Q + + TI Q
Sbjct: 64 RNASHEQAAIALKNAGQTVTIIAQ 87
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLV 154
+P C R L+ ++P+ E L F GDI+ + NQ D NW++ L G G
Sbjct: 11 QPCC--RALYDFEPE-------NEGELGFKEGDIITLTNQIDENWYEGML---HGQSGFF 58
Query: 155 PSQELE 160
P +E
Sbjct: 59 PINYVE 64
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161
L YD +E S P + L GDIL +LN + +WW+ IE G G VP+ L++
Sbjct: 10 LVLYDYQEKS--PRE---LTVKKGDILTLLNSTNKDWWK---IEVNGRQGFVPAAYLKK 60
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 118 EIGLAFNHGDILQILN-QKDPNWWQAQLIEPTGPMGLVPSQELEER 162
E L F GD+L I+ KDPNW++A+ G G++P+ +++R
Sbjct: 25 EQDLPFCKGDVLTIVAVTKDPNWYKAK--NKVGREGIIPANYVQKR 68
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 118 EIGLAFNHGDILQILN-QKDPNWWQAQLIEPTGPMGLVPSQELEER 162
E L F GD+L I+ KDPNW++A+ G G++P+ +++R
Sbjct: 25 EQDLPFCKGDVLTIVAVTKDPNWYKAK--NKVGREGIIPANYVQKR 68
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 117 KEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+E L F G+ L+IL++ + +WW+A+ G GLVP+
Sbjct: 160 RETDLPFEQGERLEILSKTNQDWWEAR--NALGTTGLVPA 197
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDP-----NWWQAQLIEPTGPMGL 153
+ R L+ + P+ E+ +A GD++ IL++KDP +WW+ + G +G
Sbjct: 9 FARALYDFVPEN------PEMEVALKKGDLMAILSKKDPLGRDSDWWKVR--TKNGNIGY 60
Query: 154 VPSQELE 160
+P +E
Sbjct: 61 IPYNYIE 67
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 121 LAFNHGDILQILNQKDPN---WWQAQLIEPTGPMGLVPSQELE 160
LAF+ GDIL IL Q P WW+ L G GL P+ L+
Sbjct: 24 LAFSRGDILTILEQHVPESEGWWKCLL---HGRQGLAPANRLQ 63
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 117 KEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+E L F G+ L+IL++ + +WW+A+ G GLVP+
Sbjct: 131 RETDLPFEQGERLEILSKTNQDWWEAR--NALGTTGLVPA 168
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160
L FN GD++ + Q D NW+Q ++ G G+ P+ +E
Sbjct: 24 LKFNKGDVILLRRQLDENWYQGEI---NGVSGIFPASSVE 60
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
Length = 60
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 121 LAFNHGDILQILN-QKDPNWWQAQLIEPTGPMGLVPSQELE 160
L GD + IL+ +K +WW QL++ +G GLVP+Q +E
Sbjct: 19 LTIKSGDKVYILDDKKSKDWWMCQLVD-SGKSGLVPAQFIE 58
>pdb|1T0H|A Chain A, Crystal Structure Of The Rattus Norvegicus Voltage Gated
Calcium Channel Beta Subunit Isoform 2a
Length = 132
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 95 KPVCY-MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGL 153
KPV + +R Y ++ +P ++F D L + + + +WW +L++ +G
Sbjct: 45 KPVAFAVRTNVRYSAAQEDDVPVPGXAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGF 104
Query: 154 VPSQ-ELEERR 163
+PS +LE R
Sbjct: 105 IPSPVKLENXR 115
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
P C R L+ ++P+ E L F GDI+ + NQ D NW++ L G G P
Sbjct: 8 PCC--RALYDFEPE-------NEGELGFKEGDIITLTNQIDENWYEGML---HGHSGFFP 55
Query: 156 SQELE 160
+E
Sbjct: 56 INYVE 60
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 121 LAFNHGDILQILN-QKDPNWWQAQLIEPTGPMGLVPSQELEER 162
L+F IL+ILN + D NW++A+L G GL+PS +E +
Sbjct: 17 LSFRKTQILKILNMEDDSNWYRAEL---DGKEGLIPSNYIEMK 56
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 118 EIGLAFNHGDILQILN-QKDPNWWQAQLIEPTGPMGLVPSQELEER 162
E L F GD+L I+ KDPNW++A+ G G++P+ +++R
Sbjct: 25 EQDLPFCKGDVLTIVAVTKDPNWYKAK--NKVGREGIIPANYVQKR 68
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 7 PLKKIL-------GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNG 59
P++K+L G G+S +T ++ ++I+ I G D+ G L VGD IL VNG
Sbjct: 9 PIRKVLLLKEDHEGLGIS---ITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNG 65
Query: 60 ENVSSPEDLQIEVVKSD--GNIQFTI 83
N+ + + + S G I+F +
Sbjct: 66 VNLRDTKHKEAVTILSQQRGEIEFEV 91
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 33.1 bits (74), Expect = 0.31, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 7 PLKKIL-------GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNG 59
P++K+L G G+S +T ++ ++I+ I G D+ G L VGD IL VNG
Sbjct: 2 PIRKVLLLKEDHEGLGIS---ITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNG 58
Query: 60 ENVSSPEDLQIEVVKSD--GNIQFTI 83
N+ + + + S G I+F +
Sbjct: 59 VNLRDTKHKEAVTILSQQRGEIEFEV 84
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 304 FFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLY--GTHLDSIREV 361
F S TTR R E +G +Y F ++ I + LE+ E +G L+ GT +R
Sbjct: 52 FSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAA 111
Query: 362 ILSGKICVLDCSPV-EEDIKRTLEESACL 389
+G +++ IK+T+ E+ +
Sbjct: 112 AATGVPVLIEVDLAGARAIKKTMPEAVTV 140
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
V + R L+ ++ E E L F G+++++L+ +P+WW +L +GL P+
Sbjct: 3 VRWARALYDFEALE-------EDELGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPA 52
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
V + R L+ ++ E E L F G+++++L+ +P+WW +L +GL P+
Sbjct: 1 VRWARALYDFEALE-------EDELGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPA 50
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 304 FFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNG--HLYGTHLDSIREV 361
F S TTR R E +G +Y F ++ I + LE+ E +G H GT +R
Sbjct: 49 FSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAA 108
Query: 362 ILSGKICVLDCSPV-EEDIKRTLEESACL 389
+G +++ IK+T+ E+ +
Sbjct: 109 AATGVPVLIEVDLAGARAIKKTMPEAVTV 137
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+F+ G+ QIL+ +WW+A+ + TG G +PS
Sbjct: 23 LSFHKGEKFQILDGDSGDWWEARSLT-TGETGYIPS 57
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 32.7 bits (73), Expect = 0.43, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 99 YMRCLFTYDPK--EDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGP------ 150
Y LF Y + ED L+F GD LQ+L+ WW A+ +E G
Sbjct: 9 YFVALFDYQARTAED---------LSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQL 59
Query: 151 MGLVPSQELEE 161
G +PS + E
Sbjct: 60 QGYIPSNYVAE 70
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ R L+ ++ E E L F G+++++L+ +P+WW +L +GL P+
Sbjct: 4 WARALYDFEALE-------EDELGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPA 51
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L YD +E S +E+ + GDIL +LN + +WW+ +E G G VP+
Sbjct: 5 LALYDYQEKS---PREVTM--KKGDILTLLNSTNKDWWK---VEVNGRQGFVPA 50
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 15 GLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVV 73
G P G+++ G + ++++ GS+ + G L+ GD +L NG N+ S + Q ++
Sbjct: 28 GSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLI 85
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 32.3 bits (72), Expect = 0.59, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G T + + + ++RI G + G L+VGD +L +NG +V+
Sbjct: 29 GSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVT 72
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 32.3 bits (72), Expect = 0.60, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+ Y K DS + K+ GDIL +LN + +WW+ +E G VP+
Sbjct: 7 LYDYQEKGDSEVTMKK-------GDILTLLNSTNKDWWK---VEVNDRQGFVPA 50
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 32.3 bits (72), Expect = 0.60, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 7 PLKKILGTGLSPCGLTVEQDANGN-LIIARILAGSLIDKQGVLKVGDVILGVNG 59
P K +L G + G + +G + ++ ILAG D G L+ GD IL VNG
Sbjct: 4 PRKVVLHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNG 57
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 32.0 bits (71), Expect = 0.65, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160
L F G+IL ++ +K WW A+ + G GLVP LE
Sbjct: 27 LTFKKGEILLVIEKKPDGWWIAK--DAKGNEGLVPRTYLE 64
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN---WWQAQLIE-----PTGPMGLV 154
L+ Y+P+ D LP KE GD + I++++D + WW A+L + P +GL
Sbjct: 176 LWDYEPQNDDELPMKE-------GDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY 228
Query: 155 PSQELEERRKA 165
P + +R A
Sbjct: 229 PRIKPRQRSLA 239
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN---WWQAQLIE-----PTGPMGLV 154
L+ Y+P+ D LP KE GD + I++++D + WW A+L + P +GL
Sbjct: 176 LWDYEPQNDDELPMKE-------GDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY 228
Query: 155 PSQELEERRKA 165
P + +R A
Sbjct: 229 PRIKPRQRSLA 239
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 32.0 bits (71), Expect = 0.76, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 121 LAFNHGDILQILNQKDP-NWWQAQLIEPTGPMGLVPS 156
L+F+ G+ QIL+ P +WW+A+ + TG G +PS
Sbjct: 23 LSFHKGEKFQILDASPPGDWWEARSLT-TGETGYIPS 58
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 32.0 bits (71), Expect = 0.76, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 20 GLTVEQDANG-----NLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIE--V 72
G +V A+G + I+R++ G L + G+L V D ++ VNG V+ Q+ +
Sbjct: 26 GTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 85
Query: 73 VKSDGNIQFTIAP 85
V + N+ T+ P
Sbjct: 86 VANSSNLIITVKP 98
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 32.0 bits (71), Expect = 0.76, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTG 149
LAF GD++++L+ + +WW Q+ + G
Sbjct: 27 LAFKAGDVIKVLDASNKDWWWGQIDDEEG 55
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 101 RC--LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158
RC F+Y P+ D L K GDI++++ + + WW+ L G G+ PS
Sbjct: 9 RCQVAFSYLPQNDDELELK-------VGDIIEVVGEVEEGWWEGVL---NGKTGMFPSNF 58
Query: 159 LEE 161
++E
Sbjct: 59 IKE 61
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 32.0 bits (71), Expect = 0.78, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEER 162
L YD +E S +E+ + GDIL +LN + +WW+ +E G VP+ +++
Sbjct: 21 LALYDYQEKS---PREVTM--KKGDILTLLNSTNKDWWK---VEVNDRQGFVPAAYVKKL 72
Query: 163 RKAFVPPE 170
A+ P+
Sbjct: 73 AAAWSHPQ 80
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 32.0 bits (71), Expect = 0.80, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 20 GLTVEQDANG-----NLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIE--V 72
G +V A+G + I+R++ G L + G+L V D ++ VNG V+ Q+ +
Sbjct: 24 GTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 83
Query: 73 VKSDGNIQFTIAP 85
V + N+ T+ P
Sbjct: 84 VANSSNLIITVKP 96
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 304 FFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLY--GTHLDSIREV 361
F S TTR R E +G +Y F ++ I + LE+ E +G L+ GT +R
Sbjct: 52 FSVSATTRCPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAA 111
Query: 362 ILSGKICVLDCSPV-EEDIKRTLEES 386
+G +++ IK+T+ E+
Sbjct: 112 AATGVPVLIEVDLAGARAIKKTMPEA 137
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 31.6 bits (70), Expect = 0.82, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENV-SSPEDLQIEVVKSDG 77
++I++I G D+ L++GD IL VNG ++ + D ++ +K G
Sbjct: 31 ILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAG 78
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 31.6 bits (70), Expect = 0.87, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDP-NWWQAQLIEPTGPMGLV 154
P ++ L+ YD + L F GD + I++QKDP WW+ +L G G V
Sbjct: 3 PGIQVKALYDYDAQTGD-------ELTFKEGDTI-IVHQKDPAGWWEGEL---NGKRGWV 51
Query: 155 PSQELEE 161
P+ +++
Sbjct: 52 PANYVQD 58
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 31.6 bits (70), Expect = 0.87, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDP-NWWQAQLIEPTGPMGLV 154
P ++ L+ YD + L F GD + I++QKDP WW+ +L G G V
Sbjct: 2 PGIQVKALYDYDAQTGD-------ELTFKEGDTI-IVHQKDPAGWWEGEL---NGKRGWV 50
Query: 155 PSQELEE 161
P+ +++
Sbjct: 51 PANYVQD 57
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 31.6 bits (70), Expect = 0.88, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 10 KILGTGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
K++ G +P G ++ +D N L I+R+ G + GV VGD +L ++GEN S
Sbjct: 6 KVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGV-AVGDWVLSIDGENAGS 61
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 31.6 bits (70), Expect = 0.90, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
P C + L+ YD ++ L+FN DI+ I+ + WW +L G GL P
Sbjct: 6 PQC--KALYAYDAQDTD-------ELSFNANDIIDIIKEDPSGWWTGRL---RGKQGLFP 53
Query: 156 S 156
+
Sbjct: 54 N 54
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 31.6 bits (70), Expect = 1.00, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 20 GLTVEQDANG-----NLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIE--V 72
G +V A+G + I+R++ G L + G+L V D ++ VNG V+ Q+ +
Sbjct: 52 GTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 111
Query: 73 VKSDGNIQFTIAP 85
V + N+ T+ P
Sbjct: 112 VANSSNLIITVKP 124
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPM--GLVPSQELEER 162
L+F GD+ + +++ WW L E G + G VP L ER
Sbjct: 27 LSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAER 70
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLV 154
+P C R L+ ++P+ L F GDI+ + NQ D NW++ + G G
Sbjct: 3 QPCC--RGLYDFEPENQGEL-------GFKEGDIITLTNQIDENWYEGMI---HGESGFF 50
Query: 155 PSQELE 160
P +E
Sbjct: 51 PINYVE 56
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQL 144
+P C + L+ ++P+ D L F GD++ + NQ D NW++ L
Sbjct: 13 QPSC--KALYDFEPENDG-------ELGFREGDLITLTNQIDENWYEGXL 53
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160
+ F+Y P+ D L K GDI++++ + + WW+ L G G+ PS ++
Sbjct: 22 QVAFSYLPQNDDELELK-------VGDIIEVVGEVEEGWWEGVL---NGKTGMFPSNFIK 71
Query: 161 E 161
E
Sbjct: 72 E 72
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 8 LKKILGTGLSPCGLTVEQDANGN--LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
LK G G S G Q G+ + I +I+ G K G L++GD +L VN N+
Sbjct: 10 LKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161
L GDIL +LN + +WW+ IE G VP+ L++
Sbjct: 23 LTVKKGDILTLLNSTNKDWWK---IEVNDRQGFVPAAYLKK 60
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L YD +E S +E+ + GDIL +LN + +WW+ ++ G G VP+
Sbjct: 10 LALYDYQEKS---PREVTM--KKGDILTLLNSTNKDWWKTEV---NGRQGFVPA 55
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161
L YD +E S +E+ + GDIL +LN + +WW+ IE G VP+ L++
Sbjct: 10 LVLYDYQEKS---PREVTI--KKGDILTLLNSTNKDWWK---IEVNDRQGFVPAAYLKK 60
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNG----ENVSSPEDL 68
G G S GL E + + I GS+ + G LK D IL +NG + ++ + +
Sbjct: 33 GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAI 92
Query: 69 QIEVVKSDGNIQFTIA 84
I + K+ +Q IA
Sbjct: 93 SI-LQKAKDTVQLVIA 107
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
Y+ L+ +DP++D L GD +Q+L + P W++ G G+ P+
Sbjct: 4 YVEALYQFDPQQDG-------DLGLKPGDKVQLLEKLSPEWYKGSC---NGRTGIFPA 51
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161
L + GDIL+++ + + WW +E G G VP LE+
Sbjct: 25 LDLSAGDILEVILEGEDGWWT---VERNGQRGFVPGSYLEK 62
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQ 157
L+F GD+L++ + +WW+ E G GL+P +
Sbjct: 27 LSFRRGDVLRLHERASSDWWRG---EHNGMRGLIPHK 60
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161
L GDIL +LN + +WW+ +E G +P+ L++
Sbjct: 23 LTIKKGDILTLLNSTNKDWWK---VEVNDRQGFIPAAYLKK 60
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 46 GVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQGDDASLPIKP 96
G LK DVI+ +NG++V S D+ +V+K + + + +D + + P
Sbjct: 64 GGLKENDVIISINGQSVVSANDVS-DVIKRESTLNMVVRRGNEDIMITVIP 113
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+F+ G+ QIL +WW+A+ + TG G +PS
Sbjct: 23 LSFHKGEKFQILEFGPGDWWEARSL-TTGETGYIPS 57
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDG 77
++ N +L + R+ ++ G +++GD IL +NGE + + + IE++K+ G
Sbjct: 45 REYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG 98
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 20 GLTVEQDANG-----NLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIE--V 72
G +V A+G + I+R++ G L + G+L V D ++ VNG V+ Q+ +
Sbjct: 52 GTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 111
Query: 73 VKSDGNIQFTIAP 85
V + N+ T+ P
Sbjct: 112 VANSSNLIITVKP 124
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 87 GDDASLPIKPVCYM-RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLI 145
G P P Y+ + + YD +D KE L+F G I+ ++ + D W++ +
Sbjct: 4 GSSGDPPWAPRSYLEKVVAIYDYTKD-----KEDELSFQEGAIIYVIKKNDDGWYEGVM- 57
Query: 146 EPTGPMGLVPSQELE 160
G GL P +E
Sbjct: 58 --NGVTGLFPGNYVE 70
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEER 162
L YD +E S +E+ + GDIL +LN + +WW+ ++ + +
Sbjct: 10 LALYDYQEKS---PREVTM--KKGDILTLLNSTNKDWWKVEV--------KATANDKTYE 56
Query: 163 RKAFVPPEADYVHKI 177
R+ FVP A YV K+
Sbjct: 57 RQGFVP--AAYVKKL 69
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of Pdz
Domain And Ligand Resonances
Length = 105
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 46 GVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQGDDASLPIKP 96
G LK DVI+ +NG++V S D+ +V+K + + + +D + + P
Sbjct: 51 GGLKENDVIISINGQSVVSANDVS-DVIKRESTLNMVVRRGNEDIMITVIP 100
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L YD +E S P + + GDIL +LN + +WW+ +E G VP+
Sbjct: 10 LALYDYQEKS--PAE---VTMKKGDILTLLNSTNKDWWK---VEVNDRQGFVPA 55
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 9 KKILGTGLSPCGLTVEQDAN-GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPED 67
K + G G++ G ++ + + I S ++ G +++GD I+ V+G N+ +
Sbjct: 12 KNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTN 71
Query: 68 LQ-IEVVKSDGN-IQFTIAPQGDDA 90
Q +EV++ G + T+ +G+ +
Sbjct: 72 QQAVEVLRHTGQTVLLTLMRRGETS 96
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIE--VVKSDGNIQFTIAP 85
+ I+R++ G L G+L V D +L VNG VS Q+ ++ + N+ T+ P
Sbjct: 67 IFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 123
>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Furiosus
Length = 534
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 49/197 (24%)
Query: 7 PLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVL-------------KVGDV 53
P+KK+ G +S + D++ L IA + G +ID +G ++G
Sbjct: 51 PVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMS 110
Query: 54 ILGVNGENVSSPEDLQIEVVKSDGNIQFTIA---------PQGDDASLPIKPV-CYMRCL 103
+ V+ V S E+L V K G I F P +D + +PV Y RC
Sbjct: 111 LEMVDLRGVKSMEELVERVKKGRGRIIFGFGWDQDELGRWPTREDLDVIDRPVFLYRRCF 170
Query: 104 FTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEERR 163
+++ K I D+L + KD + E T G+V + LEE R
Sbjct: 171 HV------AVMNSKMI-------DLLNLKPSKDFD-------EST---GIVRERALEESR 207
Query: 164 KAF---VPPEADYVHKI 177
K + DY H I
Sbjct: 208 KIINEKILTVKDYKHYI 224
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
+IIA ++ G +K G L +GD I+ +NG ++
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 66
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSD--GNIQFTIA 84
++I+ I G D+ G L VGD IL VNG N+ + + + S G I+F +
Sbjct: 55 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158
Y+R L+ + + LP F G+IL I+ + + WW A+ + G +G++P
Sbjct: 127 YVRTLYDFPGNDAEDLP-------FKKGEILVIIEKPEEQWWSARNKD--GRVGMIPVPY 177
Query: 159 LEE 161
+E+
Sbjct: 178 VEK 180
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158
Y+R L+ + + LP F G+IL I+ + + WW A+ + G +G++P
Sbjct: 127 YVRTLYDFPGNDAEDLP-------FKKGEILVIIEKPEEQWWSARNKD--GRVGMIPVPY 177
Query: 159 LEE 161
+E+
Sbjct: 178 VEK 180
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
+IIA ++ G +K G L +GD I+ +NG ++
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 62
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS---QELEERRKAF 166
L F DI+ I++QKD + W +L G G P+ + L+ER K +
Sbjct: 24 LGFRKNDIITIISQKDEHCWVGEL---NGLRGWFPAKFVEVLDERSKEY 69
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161
L+F+ GD++ + ++ WW+ L G G PS + E
Sbjct: 25 LSFSKGDVIHVTRVEEGGWWEGTL---NGRTGWFPSNYVRE 62
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 355 LDSIREVILSGKICVLDCSPVEEDIKRTLEESA 387
LD +RE LSG+I V S EED+ L+ A
Sbjct: 70 LDKLREKSLSGRIVVFSVSNHEEDVVTALKRGA 102
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 13 GTGLSPCG-LTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
G G+S G + E A+ + + I+ G K G L+V D ++ VNGE++
Sbjct: 22 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESL 72
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 13 GTGLSPCG-LTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
G G+S G + E A+ + + I+ G K G L+V D ++ VNGE++
Sbjct: 19 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESL 69
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 11 ILGTGL-SPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ 69
I+GT L S ++ DA ++++L S K G+ K GDVI +NG+ +SS L+
Sbjct: 267 IMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGI-KAGDVITSLNGKPISSFAALR 325
Query: 70 IEV 72
+V
Sbjct: 326 AQV 328
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 11 ILGTGL-SPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ 69
I+GT L S ++ DA ++++L S K G+ K GDVI +NG+ +SS L+
Sbjct: 267 IMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGI-KAGDVITSLNGKPISSFAALR 325
Query: 70 IEV 72
+V
Sbjct: 326 AQV 328
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 11 ILGTGL-SPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ 69
I+GT L S ++ DA ++++L S K G+ K GDVI +NG+ +SS L+
Sbjct: 267 IMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGI-KAGDVITSLNGKPISSFAALR 325
Query: 70 IEV 72
+V
Sbjct: 326 AQV 328
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 11 ILGTGL-SPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ 69
I+GT L S ++ DA ++++L S K G+ K GDVI +NG+ +SS L+
Sbjct: 267 IMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGI-KAGDVITSLNGKPISSFAALR 325
Query: 70 IEV 72
+V
Sbjct: 326 AQV 328
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 11 ILGTGL-SPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ 69
I+GT L S ++ DA ++++L S K G+ K GDVI +NG+ +SS L+
Sbjct: 267 IMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGI-KAGDVITSLNGKPISSFAALR 325
Query: 70 IEV 72
+V
Sbjct: 326 AQV 328
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 26 DANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAP 85
D ++I +++ GS + G L+ GDVIL + + V + ED+ E V++ + I
Sbjct: 32 DVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDV-YEAVRTQSQLAVQIRR 89
Query: 86 QGDDASLPIKP 96
+ +L + P
Sbjct: 90 GRETLTLYVTP 100
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 9 KKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVN 58
+K+ G G L E+ + +II+ ++ G ++ G+++ GD+IL VN
Sbjct: 10 RKVGGLGF----LVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN 55
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 23/75 (30%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEER 162
L YD +E S +E+ + GDIL +LN + +WW+ ++ +
Sbjct: 10 LALYDYQEKS---PREVTM--KKGDILTLLNSTNKDWWKVEVND---------------- 48
Query: 163 RKAFVPPEADYVHKI 177
R+ FVP A YV K+
Sbjct: 49 RQGFVP--ASYVKKL 61
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNL----IIARILAGSLIDKQGVLKVGDVILGVNGENV 62
L+K G GL G+ + + G+L +IA +L G ++ G L +GD + +NG ++
Sbjct: 15 LEKRRGEGL---GVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSL 70
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161
L YD +E S +E+ + GDIL +LN + +WW+ +E G +P+ L++
Sbjct: 10 LVLYDYQEKS---PREVTV--KKGDILTLLNSTNKDWWK---VEVDDRQGFIPAAYLKK 60
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 9 KKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVN 58
+K+ G G L E+ + +II+ ++ G ++ G+++ GD+IL VN
Sbjct: 12 RKVGGLGF----LVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN 57
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 28.9 bits (63), Expect = 6.2, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 13 GTGLSPCGLTVEQDANGN--LIIARILAGSLIDKQGVLKVGDVILGVN 58
G G S G Q G+ + + +I+ G K G L++GD IL VN
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 62
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 15 GLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK 74
GL+ C T ++D G + I+ I S+ K G ++ GD I+ +NG V + E+ + ++
Sbjct: 35 GLTVCYRTDDEDDIG-IYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEA-VALLT 92
Query: 75 SDGNIQFTI 83
S+ N F++
Sbjct: 93 SEENKNFSL 101
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated
Peptide
Length = 127
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 9 KKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVN 58
+K+ G G L E+ + +II+ ++ G ++ G+++ GD+IL VN
Sbjct: 17 RKVGGLGF----LVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN 62
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 28.5 bits (62), Expect = 7.1, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 46 GVLKVGDVILGVNGENV-SSPEDLQIEVVK-SDGNIQFTI 83
G LKVGD IL +NG++V +S E I+++K +D I+ I
Sbjct: 54 GRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI 93
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 11 ILGTGLSPCGLTVEQDANGNL--IIARILAGSLIDKQGVLKVGDVILGVNGEN-VSSPED 67
+LG G S GLT+ A L I + GS + G LKVGD IL VNG + ++ D
Sbjct: 27 VLGDGRS-LGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHD 84
Query: 68 LQIEVVKSDGNIQFTIAPQG 87
+ ++KS ++ T+ G
Sbjct: 85 EAVRLLKSSRHLILTVKDVG 104
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 46 GVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQGDDASLPIKP 96
G LK DVI+ +NG++V S D+ +V+K + + + +D + + P
Sbjct: 270 GGLKENDVIISINGQSVVSANDVS-DVIKRESTLNMVVRRGNEDIMITVIP 319
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 46 GVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQGDDASLPIKP 96
G LK DVI+ +NG++V S D+ +V+K + + + +D + + P
Sbjct: 270 GGLKENDVIISINGQSVVSANDVS-DVIKRESTLNMVVRRGNEDIMITVIP 319
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNG---ENVSSPEDLQIEVVKSDGN 78
+ I ++L S K LK GD IL V+G +N S E +E +K+ GN
Sbjct: 52 IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSE--AVEAIKNAGN 100
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 13 GTGLSPCGLTVEQDANGN--LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQI 70
G G S G Q G+ + + +I+ G K G L++GD +L VN NV+ E
Sbjct: 14 GLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN--NVALEEVTHE 71
Query: 71 EVVKSDGN 78
E V + N
Sbjct: 72 EAVTALKN 79
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 13 GTGLSPCGLTVEQDANGN--LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQI 70
G G S G Q G+ + + +I+ G K G L++GD +L VN NV+ E
Sbjct: 20 GLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN--NVALEEVTHE 77
Query: 71 EVVKSDGN 78
E V + N
Sbjct: 78 EAVTALKN 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,267,209
Number of Sequences: 62578
Number of extensions: 637965
Number of successful extensions: 1887
Number of sequences better than 100.0: 231
Number of HSP's better than 100.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1675
Number of HSP's gapped (non-prelim): 275
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)