Query psy4417
Match_columns 440
No_of_seqs 314 out of 3876
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 16:34:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0609|consensus 100.0 2E-76 4.4E-81 592.6 25.1 366 5-433 121-542 (542)
2 COG0194 Gmk Guanylate kinase [ 100.0 5.9E-38 1.3E-42 280.6 12.4 180 163-420 4-183 (191)
3 PRK14737 gmk guanylate kinase; 100.0 5.6E-33 1.2E-37 255.6 13.2 178 165-419 6-184 (186)
4 PLN02772 guanylate kinase 100.0 5.7E-31 1.2E-35 262.7 17.4 186 161-421 133-320 (398)
5 smart00072 GuKc Guanylate kina 100.0 4.6E-31 1E-35 242.8 15.2 182 163-420 2-183 (184)
6 PF00625 Guanylate_kin: Guanyl 100.0 1.5E-31 3.3E-36 245.7 11.7 179 163-419 2-182 (183)
7 KOG0708|consensus 100.0 5.1E-30 1.1E-34 249.9 15.2 288 56-430 2-359 (359)
8 KOG3580|consensus 100.0 3.5E-27 7.5E-32 237.6 18.7 347 5-436 406-795 (1027)
9 KOG0707|consensus 99.9 1.3E-25 2.8E-30 207.2 7.0 181 165-421 39-223 (231)
10 PRK14738 gmk guanylate kinase; 99.9 1E-23 2.2E-28 197.5 13.7 181 163-420 13-195 (206)
11 COG0194 Gmk Guanylate kinase [ 99.9 4E-22 8.7E-27 178.8 10.2 109 260-385 3-134 (191)
12 cd00071 GMPK Guanosine monopho 99.8 1.8E-20 3.8E-25 164.2 9.6 104 166-276 2-105 (137)
13 TIGR03263 guanyl_kin guanylate 99.8 1.3E-19 2.8E-24 165.6 14.9 177 165-418 3-179 (180)
14 PRK14737 gmk guanylate kinase; 99.8 1.8E-19 3.9E-24 165.9 10.7 93 265-372 9-101 (186)
15 PRK00300 gmk guanylate kinase; 99.8 1.2E-18 2.6E-23 162.6 14.6 180 165-421 7-186 (205)
16 PF00625 Guanylate_kin: Guanyl 99.7 5E-18 1.1E-22 155.9 9.4 98 261-372 2-100 (183)
17 KOG0609|consensus 99.7 1.1E-17 2.4E-22 169.5 8.0 111 248-372 326-438 (542)
18 PLN02772 guanylate kinase 99.7 5.6E-17 1.2E-21 162.6 9.7 91 268-372 141-233 (398)
19 smart00072 GuKc Guanylate kina 99.7 1.5E-16 3.2E-21 146.3 11.1 109 263-385 5-134 (184)
20 PRK14738 gmk guanylate kinase; 99.6 7.9E-15 1.7E-19 137.3 10.6 110 261-385 13-144 (206)
21 KOG0707|consensus 99.4 1.1E-13 2.4E-18 128.3 6.0 104 268-385 43-169 (231)
22 cd00071 GMPK Guanosine monopho 99.3 3.1E-12 6.7E-17 112.0 8.7 134 263-413 2-136 (137)
23 PRK10078 ribose 1,5-bisphospho 99.3 1.9E-12 4E-17 119.2 7.4 101 165-276 4-104 (186)
24 TIGR02322 phosphon_PhnN phosph 99.3 2.3E-11 5E-16 111.0 10.9 101 165-276 3-105 (179)
25 PF00595 PDZ: PDZ domain (Also 99.3 3.8E-11 8.1E-16 95.2 9.6 75 9-84 1-81 (81)
26 KOG3550|consensus 99.2 2.3E-11 4.9E-16 104.3 7.6 84 5-88 89-176 (207)
27 PRK08356 hypothetical protein; 99.1 3.4E-11 7.3E-16 111.8 3.2 75 165-250 7-81 (195)
28 TIGR03263 guanyl_kin guanylate 99.1 1.6E-09 3.6E-14 98.7 13.1 96 263-373 4-99 (180)
29 PRK00300 gmk guanylate kinase; 99.0 2.8E-09 6.2E-14 99.3 13.3 100 259-373 3-103 (205)
30 COG3709 Uncharacterized compon 99.0 2.6E-09 5.7E-14 93.8 8.7 100 166-276 8-109 (192)
31 KOG1029|consensus 98.9 6.8E-10 1.5E-14 116.2 4.6 105 43-162 994-1108(1118)
32 PF14604 SH3_9: Variant SH3 do 98.9 6.5E-10 1.4E-14 79.5 3.1 49 102-160 1-49 (49)
33 PF00018 SH3_1: SH3 domain; I 98.9 1E-09 2.2E-14 78.2 3.2 48 101-156 1-48 (48)
34 KOG2199|consensus 98.9 8.2E-10 1.8E-14 108.4 3.2 59 95-163 213-271 (462)
35 PF07653 SH3_2: Variant SH3 do 98.8 2.4E-09 5.3E-14 78.5 2.3 53 99-161 1-54 (55)
36 KOG3551|consensus 98.8 6.8E-09 1.5E-13 101.6 6.0 80 7-86 85-169 (506)
37 cd00992 PDZ_signaling PDZ doma 98.8 7.6E-08 1.6E-12 75.9 10.2 75 8-83 2-81 (82)
38 KOG3209|consensus 98.7 4.1E-08 8.9E-13 102.5 8.7 84 6-89 753-840 (984)
39 KOG3549|consensus 98.7 2.5E-08 5.3E-13 96.5 6.5 81 5-85 53-138 (505)
40 cd00136 PDZ PDZ domain, also c 98.7 1.1E-07 2.4E-12 72.7 8.5 65 18-83 2-69 (70)
41 smart00228 PDZ Domain present 98.6 3.5E-07 7.6E-12 72.2 10.3 77 8-85 3-83 (85)
42 KOG3209|consensus 98.6 1.7E-07 3.6E-12 98.1 9.2 82 5-86 897-982 (984)
43 PF13180 PDZ_2: PDZ domain; PD 98.6 3.5E-07 7.7E-12 72.5 8.3 68 18-86 2-72 (82)
44 KOG3812|consensus 98.5 3.6E-07 7.7E-12 88.4 9.6 67 96-162 57-123 (475)
45 KOG3606|consensus 98.5 4.5E-07 9.7E-12 85.3 8.3 85 4-88 156-255 (358)
46 KOG4792|consensus 98.5 5.9E-08 1.3E-12 88.9 2.4 64 94-166 121-184 (293)
47 KOG1118|consensus 98.5 7.7E-08 1.7E-12 91.8 3.0 58 93-160 302-359 (366)
48 cd00174 SH3 Src homology 3 dom 98.4 2.7E-07 5.9E-12 66.2 3.6 52 100-160 2-53 (54)
49 KOG2070|consensus 98.4 2.6E-07 5.5E-12 93.2 4.5 58 94-161 14-71 (661)
50 smart00326 SH3 Src homology 3 98.4 3.5E-07 7.6E-12 66.5 4.1 54 98-160 3-56 (58)
51 KOG0708|consensus 98.3 8.4E-07 1.8E-11 87.8 6.7 106 239-374 164-270 (359)
52 KOG1892|consensus 98.3 1.6E-06 3.4E-11 93.3 8.5 81 5-86 932-1019(1629)
53 KOG4226|consensus 98.2 3E-07 6.5E-12 86.4 0.7 54 99-161 193-248 (379)
54 KOG3651|consensus 98.2 5.8E-06 1.3E-10 79.0 8.3 77 8-84 6-87 (429)
55 KOG3553|consensus 98.2 2.6E-06 5.6E-11 68.4 5.0 64 18-83 36-113 (124)
56 PRK10078 ribose 1,5-bisphospho 98.2 8.9E-06 1.9E-10 74.7 9.4 138 263-420 5-173 (186)
57 cd00988 PDZ_CTP_protease PDZ d 98.1 8.8E-06 1.9E-10 64.6 7.6 67 18-86 3-72 (85)
58 KOG3571|consensus 98.1 9.3E-06 2E-10 82.5 8.7 85 4-88 247-341 (626)
59 TIGR02322 phosphon_PhnN phosph 98.1 8.3E-05 1.8E-09 67.6 13.6 94 263-372 4-97 (179)
60 cd00991 PDZ_archaeal_metallopr 98.0 1.6E-05 3.4E-10 62.6 7.1 56 29-85 10-67 (79)
61 KOG3580|consensus 98.0 1.5E-05 3.3E-10 82.3 8.4 79 8-88 10-99 (1027)
62 cd00990 PDZ_glycyl_aminopeptid 98.0 2.2E-05 4.9E-10 61.5 7.0 64 19-85 3-66 (80)
63 cd00989 PDZ_metalloprotease PD 98.0 2.6E-05 5.7E-10 60.8 7.3 56 29-85 12-68 (79)
64 KOG3605|consensus 98.0 1E-05 2.2E-10 84.4 5.6 79 10-88 650-736 (829)
65 KOG0162|consensus 97.9 1.1E-05 2.4E-10 85.0 4.2 53 99-161 1053-1105(1106)
66 KOG4226|consensus 97.9 1.4E-05 3.1E-10 75.4 4.2 50 103-162 113-162 (379)
67 cd00987 PDZ_serine_protease PD 97.8 5.4E-05 1.2E-09 60.5 7.1 56 29-85 24-81 (90)
68 KOG3938|consensus 97.8 3.3E-05 7.2E-10 72.7 5.6 82 4-85 124-209 (334)
69 KOG4225|consensus 97.8 2.5E-05 5.3E-10 78.3 4.7 56 95-160 430-487 (489)
70 KOG3601|consensus 97.8 9.4E-06 2E-10 74.1 1.4 58 93-160 159-216 (222)
71 KOG4225|consensus 97.7 2E-05 4.4E-10 78.9 3.3 54 98-161 231-284 (489)
72 KOG4348|consensus 97.7 3E-05 6.4E-10 77.5 4.0 56 96-161 260-317 (627)
73 cd00986 PDZ_LON_protease PDZ d 97.7 0.00015 3.3E-09 56.8 7.1 55 29-85 8-64 (79)
74 PRK00091 miaA tRNA delta(2)-is 97.7 5.4E-06 1.2E-10 82.1 -1.5 99 164-273 5-104 (307)
75 KOG3552|consensus 97.6 7E-05 1.5E-09 81.0 5.5 75 6-85 55-131 (1298)
76 KOG2856|consensus 97.6 2E-05 4.4E-10 77.1 0.9 56 97-161 414-470 (472)
77 KOG3605|consensus 97.5 9.7E-05 2.1E-09 77.3 4.8 77 4-86 734-814 (829)
78 COG0793 Prc Periplasmic protea 97.5 0.00023 5E-09 73.3 7.6 70 16-86 99-171 (406)
79 PRK10139 serine endoprotease; 97.5 0.00065 1.4E-08 71.2 10.3 56 30-86 391-446 (455)
80 TIGR00225 prc C-terminal pepti 97.4 0.00032 7E-09 70.6 7.6 68 17-86 51-121 (334)
81 KOG3542|consensus 97.4 0.00014 2.9E-09 76.4 4.9 69 5-74 534-608 (1283)
82 KOG4348|consensus 97.4 2.5E-05 5.4E-10 78.0 -0.6 53 99-161 102-154 (627)
83 PLN00049 carboxyl-terminal pro 97.4 0.00041 8.9E-09 71.3 8.3 68 17-85 85-160 (389)
84 TIGR02037 degP_htrA_DO peripla 97.3 0.0011 2.3E-08 69.2 9.9 57 29-86 362-420 (428)
85 PRK10779 zinc metallopeptidase 97.3 0.0014 2.9E-08 68.8 10.1 54 31-85 223-277 (449)
86 TIGR03279 cyano_FeS_chp putati 97.3 0.00045 9.7E-09 70.9 6.1 104 33-139 2-131 (433)
87 KOG3875|consensus 97.2 9.5E-05 2.1E-09 71.2 0.9 56 97-160 268-328 (362)
88 PRK10942 serine endoprotease; 97.2 0.0017 3.7E-08 68.4 10.3 56 30-86 409-464 (473)
89 PRK11186 carboxy-terminal prot 97.2 0.00074 1.6E-08 73.4 7.7 69 17-86 244-320 (667)
90 KOG0515|consensus 97.2 0.00012 2.7E-09 74.9 1.6 51 100-160 686-739 (752)
91 KOG2996|consensus 97.2 0.0002 4.4E-09 74.1 3.1 39 120-161 821-861 (865)
92 TIGR02037 degP_htrA_DO peripla 97.1 0.0012 2.6E-08 68.8 7.8 56 29-85 257-314 (428)
93 TIGR00174 miaA tRNA isopenteny 97.1 0.00011 2.5E-09 71.9 -0.0 99 166-276 2-104 (287)
94 TIGR01713 typeII_sec_gspC gene 97.1 0.0018 3.9E-08 62.7 8.0 67 19-86 179-249 (259)
95 KOG2546|consensus 97.0 0.00034 7.4E-09 70.1 2.5 52 100-161 426-477 (483)
96 PRK10942 serine endoprotease; 97.0 0.0021 4.6E-08 67.7 8.4 57 29-86 311-369 (473)
97 KOG3655|consensus 97.0 0.00034 7.3E-09 71.2 2.0 55 96-159 426-480 (484)
98 KOG3632|consensus 96.9 0.00055 1.2E-08 74.7 3.2 59 100-161 1141-1201(1335)
99 PRK08356 hypothetical protein; 96.9 0.0015 3.1E-08 60.5 5.6 49 306-354 33-81 (195)
100 TIGR02038 protease_degS peripl 96.9 0.0018 3.8E-08 65.7 6.5 56 29-85 278-335 (351)
101 PRK10139 serine endoprotease; 96.9 0.0023 5E-08 67.1 7.2 56 29-85 290-347 (455)
102 PF04495 GRASP55_65: GRASP55/6 96.9 0.0053 1.1E-07 53.7 8.3 80 5-85 9-100 (138)
103 TIGR00054 RIP metalloprotease 96.9 0.0022 4.7E-08 66.6 6.9 55 30-85 204-259 (420)
104 KOG0197|consensus 96.8 0.00027 5.8E-09 73.0 -0.2 57 98-162 12-69 (468)
105 PRK10898 serine endoprotease; 96.8 0.0027 5.9E-08 64.4 7.1 56 29-85 279-336 (353)
106 PRK00091 miaA tRNA delta(2)-is 96.8 0.00082 1.8E-08 66.7 3.0 72 304-385 42-129 (307)
107 KOG1264|consensus 96.7 0.0015 3.2E-08 70.2 4.1 58 96-162 773-830 (1267)
108 TIGR02860 spore_IV_B stage IV 96.6 0.0079 1.7E-07 61.4 8.3 71 13-86 92-170 (402)
109 PF14685 Tricorn_PDZ: Tricorn 96.6 0.011 2.3E-07 47.6 7.3 69 18-87 2-80 (88)
110 PRK10779 zinc metallopeptidase 96.5 0.0036 7.8E-08 65.6 5.5 56 31-87 128-185 (449)
111 TIGR00054 RIP metalloprotease 96.4 0.0058 1.3E-07 63.5 6.6 56 30-86 129-184 (420)
112 KOG1029|consensus 96.4 0.0022 4.8E-08 68.6 2.9 53 99-162 815-867 (1118)
113 KOG1843|consensus 96.0 0.0024 5.2E-08 63.8 1.2 51 99-159 418-470 (473)
114 TIGR00174 miaA tRNA isopenteny 95.8 0.025 5.4E-07 55.6 6.9 90 263-370 2-93 (287)
115 KOG4278|consensus 95.4 0.012 2.5E-07 62.5 3.3 53 99-161 92-145 (1157)
116 KOG3532|consensus 95.4 0.046 1E-06 58.2 7.4 69 16-85 385-453 (1051)
117 KOG4575|consensus 95.2 0.022 4.8E-07 59.9 4.5 60 93-160 4-63 (874)
118 PRK04040 adenylate kinase; Pro 95.0 0.11 2.3E-06 47.9 8.1 43 375-417 140-187 (188)
119 KOG3129|consensus 94.9 0.06 1.3E-06 49.6 6.0 55 30-85 140-198 (231)
120 COG3975 Predicted protease wit 94.9 0.031 6.8E-07 58.1 4.6 41 18-60 452-492 (558)
121 KOG1702|consensus 94.7 0.033 7.1E-07 50.9 3.7 55 98-160 208-262 (264)
122 KOG1738|consensus 94.4 0.068 1.5E-06 56.7 5.8 71 14-84 210-282 (638)
123 KOG3557|consensus 94.3 0.013 2.8E-07 61.9 0.2 55 97-161 500-554 (721)
124 KOG3632|consensus 94.2 0.046 9.9E-07 60.3 4.0 61 98-161 1245-1306(1335)
125 KOG0606|consensus 94.1 0.1 2.2E-06 58.7 6.6 80 9-89 629-719 (1205)
126 KOG3601|consensus 94.0 0.014 3E-07 53.8 -0.3 48 102-159 5-53 (222)
127 PLN02840 tRNA dimethylallyltra 93.9 0.0077 1.7E-07 62.0 -2.4 108 159-277 17-127 (421)
128 COG0265 DegQ Trypsin-like seri 93.4 0.18 3.9E-06 51.0 6.6 57 29-86 270-328 (347)
129 cd00227 CPT Chloramphenicol (C 93.4 0.1 2.3E-06 47.1 4.4 30 243-272 67-96 (175)
130 PRK00098 GTPase RsgA; Reviewed 93.1 0.027 5.8E-07 55.8 0.1 98 165-263 166-277 (298)
131 KOG3771|consensus 92.7 0.065 1.4E-06 55.0 2.1 46 94-146 397-443 (460)
132 COG3031 PulC Type II secretory 92.1 0.48 1E-05 44.7 6.8 48 38-86 216-265 (275)
133 COG3480 SdrC Predicted secrete 91.9 0.35 7.6E-06 47.5 5.9 54 30-85 131-186 (342)
134 KOG2222|consensus 91.8 0.13 2.8E-06 52.8 2.9 65 99-173 550-617 (848)
135 KOG3523|consensus 91.6 0.089 1.9E-06 55.5 1.7 54 100-161 611-664 (695)
136 COG3709 Uncharacterized compon 91.5 1.7 3.7E-05 39.0 9.3 114 304-421 37-184 (192)
137 KOG1451|consensus 91.4 0.26 5.5E-06 51.9 4.7 52 99-160 758-810 (812)
138 KOG1320|consensus 90.6 0.55 1.2E-05 49.0 6.3 55 30-85 399-455 (473)
139 KOG1421|consensus 90.6 0.42 9.2E-06 51.3 5.4 57 29-87 303-360 (955)
140 PRK09681 putative type II secr 90.5 0.96 2.1E-05 44.1 7.5 55 31-86 206-265 (276)
141 PF12812 PDZ_1: PDZ-like domai 89.9 1.1 2.3E-05 35.2 5.9 46 31-77 32-77 (78)
142 PRK00698 tmk thymidylate kinas 88.5 0.36 7.8E-06 44.3 2.8 85 165-267 5-94 (205)
143 PRK00098 GTPase RsgA; Reviewed 86.4 2.3 4.9E-05 42.1 7.3 112 247-367 151-277 (298)
144 KOG4792|consensus 85.3 0.9 2E-05 42.5 3.5 56 96-159 226-281 (293)
145 PRK00081 coaE dephospho-CoA ki 85.0 2.6 5.6E-05 38.8 6.5 44 375-419 149-193 (194)
146 PTZ00451 dephospho-CoA kinase; 84.9 1.1 2.5E-05 43.0 4.2 46 375-421 161-209 (244)
147 KOG3725|consensus 80.8 1.3 2.9E-05 42.1 2.7 55 96-160 316-372 (375)
148 KOG4773|consensus 80.5 0.6 1.3E-05 46.3 0.4 52 100-161 178-229 (386)
149 KOG3775|consensus 80.3 1 2.2E-05 45.1 1.9 56 98-161 263-318 (482)
150 KOG3834|consensus 78.9 3.1 6.8E-05 42.6 4.9 66 22-87 8-74 (462)
151 KOG4371|consensus 78.7 2.8 6.1E-05 47.2 4.8 76 10-85 1250-1328(1332)
152 PF14603 hSH3: Helically-exten 78.2 1.6 3.5E-05 34.7 2.1 41 119-161 31-71 (89)
153 PLN02422 dephospho-CoA kinase 76.4 3.2 6.9E-05 39.6 4.0 51 375-426 150-201 (232)
154 KOG2528|consensus 75.5 1.4 3E-05 45.2 1.4 57 98-163 3-60 (490)
155 PRK05480 uridine/cytidine kina 75.4 3.7 8E-05 38.0 4.1 22 164-185 7-28 (209)
156 PRK06762 hypothetical protein; 75.1 5.3 0.00011 35.3 4.9 20 165-184 4-23 (166)
157 PRK14732 coaE dephospho-CoA ki 74.8 6.3 0.00014 36.4 5.5 45 375-420 146-191 (196)
158 KOG2996|consensus 72.0 2.9 6.4E-05 44.3 2.7 41 119-160 625-666 (865)
159 KOG4407|consensus 71.3 5 0.00011 46.4 4.4 56 6-62 46-128 (1973)
160 KOG0199|consensus 70.0 4.2 9.1E-05 44.5 3.4 53 100-160 377-430 (1039)
161 PF11302 DUF3104: Protein of u 69.2 5.4 0.00012 30.9 3.0 26 120-145 3-34 (75)
162 KOG4429|consensus 67.5 6 0.00013 38.5 3.6 53 99-161 365-417 (421)
163 PRK14729 miaA tRNA delta(2)-is 66.3 4.2 9.1E-05 40.3 2.4 101 165-277 6-109 (300)
164 PLN02748 tRNA dimethylallyltra 66.2 5.1 0.00011 42.2 3.1 100 162-278 21-129 (468)
165 PRK14731 coaE dephospho-CoA ki 65.5 8.8 0.00019 35.7 4.3 45 375-420 158-203 (208)
166 PLN02840 tRNA dimethylallyltra 64.8 7.9 0.00017 40.2 4.1 54 306-370 61-115 (421)
167 KOG1421|consensus 64.5 16 0.00034 39.9 6.2 76 29-109 862-937 (955)
168 PF11874 DUF3394: Domain of un 64.2 11 0.00024 34.5 4.5 39 18-58 112-150 (183)
169 KOG4371|consensus 63.9 6.9 0.00015 44.3 3.7 76 9-86 1150-1227(1332)
170 COG0750 Predicted membrane-ass 63.4 14 0.00031 37.4 5.8 53 32-85 132-188 (375)
171 PRK14734 coaE dephospho-CoA ki 62.6 19 0.00041 33.3 5.9 46 375-421 150-196 (200)
172 smart00743 Agenet Tudor-like d 62.6 8.7 0.00019 28.0 3.0 24 122-145 2-25 (61)
173 KOG4407|consensus 60.5 5.5 0.00012 46.1 2.2 59 29-88 143-203 (1973)
174 PF08239 SH3_3: Bacterial SH3 59.9 6.4 0.00014 27.9 1.8 36 122-159 18-54 (55)
175 smart00287 SH3b Bacterial SH3 56.9 12 0.00026 27.2 2.9 36 121-158 25-60 (63)
176 TIGR00152 dephospho-CoA kinase 53.1 20 0.00043 32.5 4.3 39 375-414 148-187 (188)
177 KOG3834|consensus 52.4 55 0.0012 33.9 7.5 82 5-86 76-167 (462)
178 COG0324 MiaA tRNA delta(2)-iso 52.2 11 0.00023 37.5 2.5 97 165-272 5-102 (308)
179 cd00227 CPT Chloramphenicol (C 47.6 38 0.00082 30.3 5.2 63 346-414 66-129 (175)
180 COG1102 Cmk Cytidylate kinase 45.2 30 0.00065 31.3 3.9 19 166-184 3-21 (179)
181 PRK10884 SH3 domain-containing 45.0 25 0.00055 32.8 3.6 38 122-161 49-87 (206)
182 KOG1384|consensus 44.4 9.4 0.0002 38.1 0.7 103 164-276 8-112 (348)
183 COG1936 Predicted nucleotide k 42.2 1.3E+02 0.0029 27.4 7.6 19 401-419 138-156 (180)
184 PRK14730 coaE dephospho-CoA ki 37.5 46 0.00099 30.6 4.1 43 375-418 150-193 (195)
185 PRK14733 coaE dephospho-CoA ki 37.1 43 0.00093 31.2 3.9 45 375-420 153-199 (204)
186 PF06347 SH3_4: Bacterial SH3 35.2 40 0.00087 23.9 2.7 35 121-159 19-53 (55)
187 KOG0744|consensus 34.8 26 0.00056 35.2 2.1 53 242-294 247-299 (423)
188 KOG3565|consensus 33.7 18 0.00039 39.7 0.9 57 96-160 577-634 (640)
189 PRK06761 hypothetical protein; 33.6 23 0.0005 34.8 1.6 82 165-266 5-86 (282)
190 COG1821 Predicted ATP-utilizin 28.9 1.1E+02 0.0024 29.7 5.1 91 339-430 40-138 (307)
191 KOG0040|consensus 26.7 5.7 0.00012 46.6 -4.4 56 96-161 967-1022(2399)
192 PRK01184 hypothetical protein; 26.6 1.6E+02 0.0034 26.2 5.7 47 375-421 132-180 (184)
193 COG1703 ArgK Putative periplas 26.5 3.9E+02 0.0085 26.7 8.6 92 168-273 56-154 (323)
194 KOG2921|consensus 26.1 1.3E+02 0.0027 31.0 5.2 45 29-74 220-265 (484)
195 PRK04966 hypothetical protein; 24.4 62 0.0013 24.9 2.1 45 218-267 4-55 (72)
196 COG1160 Predicted GTPases [Gen 24.2 1.6E+02 0.0035 30.8 5.8 146 261-434 179-333 (444)
197 PRK08099 bifunctional DNA-bind 24.2 4E+02 0.0087 27.5 8.8 26 395-420 367-393 (399)
198 TIGR01223 Pmev_kin_anim phosph 23.7 79 0.0017 28.9 3.0 25 396-420 153-178 (182)
199 PHA02757 hypothetical protein; 22.9 78 0.0017 23.7 2.3 26 247-272 31-56 (75)
200 PLN02165 adenylate isopentenyl 21.1 23 0.00051 35.6 -0.9 104 165-279 45-152 (334)
201 COG2019 AdkA Archaeal adenylat 20.9 6.5E+02 0.014 23.0 8.8 45 375-419 139-188 (189)
202 PRK01732 rnpA ribonuclease P; 20.3 3.2E+02 0.0069 22.8 5.9 43 377-419 63-111 (114)
No 1
>KOG0609|consensus
Probab=100.00 E-value=2e-76 Score=592.61 Aligned_cols=366 Identities=41% Similarity=0.671 Sum_probs=310.2
Q ss_pred CCCeEEEEeeC-CCCccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceee
Q psy4417 5 PHPLKKILGTG-LSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQF 81 (440)
Q Consensus 5 ~~~r~v~l~r~-g~~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l 81 (440)
...+.|.++|+ +.++|++++..+++.++|++|+.||.|+++|.|++||+|++|||+++ ..+++++++|+++.|.++|
T Consensus 121 ~~vriv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itf 200 (542)
T KOG0609|consen 121 EAVRIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITF 200 (542)
T ss_pred ceeEEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEE
Confidence 34567778887 89999999987667899999999999999999999999999999999 6799999999999999999
Q ss_pred eeccCCCCCCCCCCccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCC--CCCCccccchhH
Q psy4417 82 TIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEP--TGPMGLVPSQEL 159 (440)
Q Consensus 82 ~v~p~~~~~~~~~~~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~--~~~~G~iPs~~~ 159 (440)
+++|... + .+....+|+||+|||+|..|+.+||+|++|+|++||||+|++++|.+||||++++. .+.+|+|||+.+
T Consensus 201 kiiP~~~-~-~~~~~~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~ 278 (542)
T KOG0609|consen 201 KIIPSYR-P-PPQQQVVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKEL 278 (542)
T ss_pred EEccccc-C-CCceeeeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHH
Confidence 9999988 3 33334699999999999999999999999999999999999999999999999974 478999999999
Q ss_pred HHhhhcccCCCcccccccccccccccccc-ccc----------------cccc-----------------------cc--
Q psy4417 160 EERRKAFVPPEADYVHKIGICGTRYIKQY-NTL----------------QYNS-----------------------TL-- 197 (440)
Q Consensus 160 ~~rr~~~~~~~~~~~gk~~~~~~~~~~~~-~~~----------------~~~~-----------------------~~-- 197 (440)
++||.++.....+-.-..+.|..+.++++ .+. .|+. ++
T Consensus 279 qerr~a~~~~~~~~~~~~~~c~~l~kkkk~~~~~y~~~~~~~~d~~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~ 358 (542)
T KOG0609|consen 279 QERRVACLRREVSKEPEKTRCQRLSKKKKKKKSKYLGKHSAVFDQPELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKN 358 (542)
T ss_pred HHHHHHHHhhhcccCCcCchhcccchhhhhhhhhhhhhcchhhhccccccHHHHhhhcccccceEEEECCcccchHHHHH
Confidence 99999876543331111123333222211 111 1111 11
Q ss_pred ---------CcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEcCCccccchhhHHHHHhcCCeEEeec
Q psy4417 198 ---------MSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDC 268 (440)
Q Consensus 198 ---------~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~g~~yg~~~~~i~~v~~~g~~~il~~ 268 (440)
+..+||||||+||++|++|++|+|||+++|+++|.+|+||||++|.+++|||++++|++++++||+|||++
T Consensus 359 ~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv 438 (542)
T KOG0609|consen 359 KLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDV 438 (542)
T ss_pred HHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEEEec
Confidence 22899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCceeeEEEEcC
Q psy4417 269 SPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNG 348 (440)
Q Consensus 269 ~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle~~~~~~ 348 (440)
.|++++.| ++++|.|++| ||.||+-..++..+.. +.
T Consensus 439 ~Pqalk~l--------Rt~Ef~PyVI---------FI~pP~~~~~r~~r~~---~~------------------------ 474 (542)
T KOG0609|consen 439 EPQALKVL--------RTAEFKPYVI---------FIAPPSLEELRALRKV---AV------------------------ 474 (542)
T ss_pred CHHHhhhh--------hhhcccceEE---------EecCCCchhHHHHhhh---cc------------------------
Confidence 99999999 8999999999 9999993333333211 00
Q ss_pred ccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHHHHHHHHHhcCCccEEEEcCCHHHHHHHHHHHHHhccCCCeeee
Q psy4417 349 HLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESACLQRSYERFIDKVIVNEDFDETFRTVIELLDTLSNKHQVDS 428 (440)
Q Consensus 349 ~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nddl~~a~~~l~~~i~~~~~~~~wvp 428 (440)
+- .+...++++++|++++.++++|+++|+|+||.+|+|+|+|.|+++|+.+|..++++|||||
T Consensus 475 --~~---------------~~~~~~~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~~~iekl~tepqWVP 537 (542)
T KOG0609|consen 475 --MS---------------TIVAKQFTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFRELKTAIEKLRTEPQWVP 537 (542)
T ss_pred --cc---------------ccccccCCHHHHHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHHHHHHHhccCCceee
Confidence 00 0123457899999999999999999999999999999999999999999999999999999
Q ss_pred cccee
Q psy4417 429 RPTIL 433 (440)
Q Consensus 429 ~~w~~ 433 (440)
++|++
T Consensus 538 vsWv~ 542 (542)
T KOG0609|consen 538 VSWVY 542 (542)
T ss_pred eeccC
Confidence 99985
No 2
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.9e-38 Score=280.55 Aligned_cols=180 Identities=29% Similarity=0.402 Sum_probs=159.2
Q ss_pred hhcccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEE
Q psy4417 163 RKAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEH 242 (440)
Q Consensus 163 r~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~ 242 (440)
-++++++||+++||+|+++.++.+. ++.| +|++|||+||+||+||+||||+|+++|++++++++||||+++
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~-------SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~ 74 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD--KLRF-------SVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEY 74 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc--CeEE-------EEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEE
Confidence 4567889999999999999988765 6664 999999999999999999999999999999999999999999
Q ss_pred cCCccccchhhHHHHHhcCCeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCcc
Q psy4417 243 NGHLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQN 322 (440)
Q Consensus 243 ~g~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~ 322 (440)
+||+|||+...|++.+++|+.+||+++.+|+.++ +..+|.+++| |+.||+ +.+++.+-
T Consensus 75 ~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qv----------k~~~p~~v~I-------Fi~pPs---~eeL~~RL-- 132 (191)
T COG0194 75 HGNYYGTSREPVEQALAEGKDVILDIDVQGALQV----------KKKMPNAVSI-------FILPPS---LEELERRL-- 132 (191)
T ss_pred cCCcccCcHHHHHHHHhcCCeEEEEEehHHHHHH----------HHhCCCeEEE-------EEcCCC---HHHHHHHH--
Confidence 9999999999999999999999999999999999 5567888988 999999 87776431
Q ss_pred ccccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHHHHHHHHHhcCCccEEEE
Q psy4417 323 YWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESACLQRSYERFIDKVIV 402 (440)
Q Consensus 323 y~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~~~e~~~~~~fd~vi~ 402 (440)
..+|| .+.+.+++||+.+. .|..+...|||+|+
T Consensus 133 --------------------------~~Rgt--------------------ds~e~I~~Rl~~a~-~Ei~~~~~fdyviv 165 (191)
T COG0194 133 --------------------------KGRGT--------------------DSEEVIARRLENAK-KEISHADEFDYVIV 165 (191)
T ss_pred --------------------------HccCC--------------------CCHHHHHHHHHHHH-HHHHHHHhCCEEEE
Confidence 23343 48999999999954 45566667999999
Q ss_pred cCCHHHHHHHHHHHHHhc
Q psy4417 403 NEDFDETFRTVIELLDTL 420 (440)
Q Consensus 403 Nddl~~a~~~l~~~i~~~ 420 (440)
|||++.|+.+|+.+|...
T Consensus 166 Ndd~e~a~~~l~~ii~ae 183 (191)
T COG0194 166 NDDLEKALEELKSIILAE 183 (191)
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 999999999999999755
No 3
>PRK14737 gmk guanylate kinase; Provisional
Probab=100.00 E-value=5.6e-33 Score=255.56 Aligned_cols=178 Identities=24% Similarity=0.358 Sum_probs=148.4
Q ss_pred cccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEcC
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNG 244 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~g 244 (440)
.+++.||+|+||.++.+.++.+. ..+. .+++||||+||++|++|++|+|||+++|++++++|+|+||++++|
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~-~~~~-------~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g 77 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH-PDFL-------FSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHD 77 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC-Cccc-------cccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECC
Confidence 56788999999999999887653 3343 489999999999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHhcCCeEEeecCcchhhhhhhhhccccccccCCCce-EEecCCCccceeecCCCcccchhhccCccc
Q psy4417 245 HLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYT-YSIPICSWSSFFASDTTRPMRELEENGQNY 323 (440)
Q Consensus 245 ~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~-i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y 323 (440)
++|||+.++|++++++|++||++++++|++.| + ..+|.. +.| |+.||+ +..++.+
T Consensus 78 ~~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l--------~--~~~~~~~~~I-------fi~pps---~e~l~~R---- 133 (186)
T PRK14737 78 NYYGTPKAFIEDAFKEGRSAIMDIDVQGAKII--------K--EKFPERIVTI-------FIEPPS---EEEWEER---- 133 (186)
T ss_pred eeecCcHHHHHHHHHcCCeEEEEcCHHHHHHH--------H--HhCCCCeEEE-------EEECCC---HHHHHHH----
Confidence 99999999999999999999999999999998 2 334532 344 999988 4444321
Q ss_pred cccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHHHHHHHHHhcCCccEEEEc
Q psy4417 324 WFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESACLQRSYERFIDKVIVN 403 (440)
Q Consensus 324 ~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~~~e~~~~~~fd~vi~N 403 (440)
+...+ ..+.+++++|++. +..+..+.+.||++|+|
T Consensus 134 -------------------------------------L~~R~-------~~s~e~i~~Rl~~-~~~e~~~~~~~D~vI~N 168 (186)
T PRK14737 134 -------------------------------------LIHRG-------TDSEESIEKRIEN-GIIELDEANEFDYKIIN 168 (186)
T ss_pred -------------------------------------HHhcC-------CCCHHHHHHHHHH-HHHHHhhhccCCEEEEC
Confidence 01111 1367899999997 45677888999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy4417 404 EDFDETFRTVIELLDT 419 (440)
Q Consensus 404 ddl~~a~~~l~~~i~~ 419 (440)
+|+++++++|+++|..
T Consensus 169 ~dle~a~~ql~~ii~~ 184 (186)
T PRK14737 169 DDLEDAIADLEAIICG 184 (186)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999999863
No 4
>PLN02772 guanylate kinase
Probab=99.97 E-value=5.7e-31 Score=262.74 Aligned_cols=186 Identities=30% Similarity=0.458 Sum_probs=154.9
Q ss_pred HhhhcccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEE
Q psy4417 161 ERRKAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYG 240 (440)
Q Consensus 161 ~rr~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~ 240 (440)
.+++.+++.||+++||.++++.+.......+. ++++||||+||++|.+|.+|+|+++++|++++++|+|+||+
T Consensus 133 ~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~-------~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~ 205 (398)
T PLN02772 133 NAEKPIVISGPSGVGKGTLISMLMKEFPSMFG-------FSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFA 205 (398)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhhhcccccc-------ccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceee
Confidence 35668889999999999999888765444454 49999999999999999999999999999999999999999
Q ss_pred EEcCCccccchhhHHHHHhcCCeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccC
Q psy4417 241 EHNGHLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENG 320 (440)
Q Consensus 241 ~~~g~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g 320 (440)
+++|++|||++++|+.++++|++|||+++++|++.|+ ...+.+.+| |+.||+ +..++.+
T Consensus 206 e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr--------~~~l~~v~I---------FI~PPS---lEeLe~R- 264 (398)
T PLN02772 206 SVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVR--------ASSLEAIFI---------FICPPS---MEELEKR- 264 (398)
T ss_pred eecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHH--------HhcCCeEEE---------EEeCCC---HHHHHHH-
Confidence 9999999999999999999999999999999999993 233455555 999999 6666532
Q ss_pred ccccccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHHHH-HHHH-HhcCCcc
Q psy4417 321 QNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESA-CLQR-SYERFID 398 (440)
Q Consensus 321 ~~y~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~-~~e~-~~~~~fd 398 (440)
+. .+|+ .+.+++++||+.+. +++. .+.+.||
T Consensus 265 -------------L~--------------~RGt--------------------eseE~I~kRL~~A~~Ei~~~~~~~~fD 297 (398)
T PLN02772 265 -------------LR--------------ARGT--------------------ETEEQIQKRLRNAEAELEQGKSSGIFD 297 (398)
T ss_pred -------------HH--------------hcCC--------------------CCHHHHHHHHHHHHHHHhhccccCCCC
Confidence 11 1122 37889999999874 3442 3568999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcc
Q psy4417 399 KVIVNEDFDETFRTVIELLDTLS 421 (440)
Q Consensus 399 ~vi~Nddl~~a~~~l~~~i~~~~ 421 (440)
++|+|||+++|+++|+++|....
T Consensus 298 ~vIvNDdLe~A~~~L~~iL~~~~ 320 (398)
T PLN02772 298 HILYNDNLEECYKNLKKLLGLDG 320 (398)
T ss_pred EEEECCCHHHHHHHHHHHHhhcC
Confidence 99999999999999999997553
No 5
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.97 E-value=4.6e-31 Score=242.79 Aligned_cols=182 Identities=34% Similarity=0.515 Sum_probs=153.0
Q ss_pred hhcccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEE
Q psy4417 163 RKAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEH 242 (440)
Q Consensus 163 r~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~ 242 (440)
++.+++.||+++||++++..+.......+. .+++||||+||++|++|.+|+|+|+++|++++++|+|+||+++
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~-------~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~ 74 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE-------RVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEY 74 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE-------eeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEE
Confidence 346778999999999999888766443555 4999999999999999999999999999999999999999999
Q ss_pred cCCccccchhhHHHHHhcCCeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCcc
Q psy4417 243 NGHLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQN 322 (440)
Q Consensus 243 ~g~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~ 322 (440)
+|++|||++++|++++++|++|||++++.|+.+| +...+.|++| |+.|++ ...++.+-
T Consensus 75 ~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~~~l--------~~~~~~~~vI---------fi~~~s---~~~l~~rl-- 132 (184)
T smart00072 75 SGNYYGTSKETIRQVAEQGKHCLLDIDPQGVKQL--------RKAQLYPIVI---------FIAPPS---SEELERRL-- 132 (184)
T ss_pred cCcCcccCHHHHHHHHHcCCeEEEEECHHHHHHH--------HHhCCCcEEE---------EEeCcC---HHHHHHHH--
Confidence 9999999999999999999999999999999999 4345667776 999888 44443210
Q ss_pred ccccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHHHHHHHHHhcCCccEEEE
Q psy4417 323 YWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESACLQRSYERFIDKVIV 402 (440)
Q Consensus 323 y~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~~~e~~~~~~fd~vi~ 402 (440)
. .+|+ .+.+++++|++.+..++..+ +.||++|+
T Consensus 133 ------------~--------------~R~~--------------------~~~~~i~~rl~~a~~~~~~~-~~fd~~I~ 165 (184)
T smart00072 133 ------------R--------------GRGT--------------------ETAERIQKRLAAAQKEAQEY-HLFDYVIV 165 (184)
T ss_pred ------------H--------------hcCC--------------------CCHHHHHHHHHHHHHHHhhh-ccCCEEEE
Confidence 0 0111 36789999999876666655 88999999
Q ss_pred cCCHHHHHHHHHHHHHhc
Q psy4417 403 NEDFDETFRTVIELLDTL 420 (440)
Q Consensus 403 Nddl~~a~~~l~~~i~~~ 420 (440)
|+|+++|+++|+++|...
T Consensus 166 n~~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 166 NDDLEDAYEELKEILEAE 183 (184)
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 999999999999999754
No 6
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.97 E-value=1.5e-31 Score=245.67 Aligned_cols=179 Identities=31% Similarity=0.513 Sum_probs=144.5
Q ss_pred hhcccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEE
Q psy4417 163 RKAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEH 242 (440)
Q Consensus 163 r~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~ 242 (440)
++.+++.||+++||.++...+....+.++. .+++||||+||++|++|.+|+|||+++|++++++|+|+||+++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~-------~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~ 74 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFG-------RVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEY 74 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEE-------EEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccc-------cceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeee
Confidence 456788999999999999988776666666 4999999999999999999999999999999999999999999
Q ss_pred cCCccccchhhHHHHHhcCCeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCcc
Q psy4417 243 NGHLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQN 322 (440)
Q Consensus 243 ~g~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~ 322 (440)
+|++|||+.++|++++++|++|||+++++|++.| +...+.|++| ||.|++ +..++..
T Consensus 75 ~g~~YGt~~~~i~~~~~~gk~~il~~~~~g~~~L--------~~~~~~~~~I---------fI~~~s---~~~l~~~--- 131 (183)
T PF00625_consen 75 DGNYYGTSKSAIDKVLEEGKHCILDVDPEGVKQL--------KKAGFNPIVI---------FIKPPS---PEVLKRR--- 131 (183)
T ss_dssp TTEEEEEEHHHHHHHHHTTTEEEEEETHHHHHHH--------HHCTTTEEEE---------EEEESS---HHHHHHH---
T ss_pred cchhhhhccchhhHhhhcCCcEEEEccHHHHHHH--------HhcccCceEE---------EEEccc---hHHHHHH---
Confidence 9999999999999999999999999999999999 5567888888 888887 4444311
Q ss_pred ccccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHHHHHHHHHhcCC--ccEE
Q psy4417 323 YWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESACLQRSYERF--IDKV 400 (440)
Q Consensus 323 y~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~~~e~~~~~~--fd~v 400 (440)
+. .+|+ .+.+++.+|+..+.+ .+.+. ||++
T Consensus 132 ------------l~-------------~r~~--------------------~~~~~i~~r~~~~~~---~~~~~~~fd~v 163 (183)
T PF00625_consen 132 ------------LR-------------RRGD--------------------ESEEEIEERLERAEK---EFEHYNEFDYV 163 (183)
T ss_dssp ------------HH-------------TTTH--------------------CHHHHHHHHHHHHHH---HHGGGGGSSEE
T ss_pred ------------Hh-------------cccc--------------------ccHHHHHHHHHHHHH---HHhHhhcCCEE
Confidence 00 0111 135567777766443 33334 9999
Q ss_pred EEcCCHHHHHHHHHHHHHh
Q psy4417 401 IVNEDFDETFRTVIELLDT 419 (440)
Q Consensus 401 i~Nddl~~a~~~l~~~i~~ 419 (440)
|+|+|+++|+.+|+++|.+
T Consensus 164 i~n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 164 IVNDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp EECSSHHHHHHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHh
Confidence 9999999999999999975
No 7
>KOG0708|consensus
Probab=99.97 E-value=5.1e-30 Score=249.89 Aligned_cols=288 Identities=25% Similarity=0.429 Sum_probs=225.5
Q ss_pred eECCccC--CCHHHHHHHHHhcCCceeeeeccCCCC---------------------CCCCCCccccccccccCCCCCCC
Q psy4417 56 GVNGENV--SSPEDLQIEVVKSDGNIQFTIAPQGDD---------------------ASLPIKPVCYMRCLFTYDPKEDS 112 (440)
Q Consensus 56 ~VNg~~v--~t~~e~~~~L~~~~~~v~l~v~p~~~~---------------------~~~~~~~~~~vRal~dy~p~~d~ 112 (440)
.+||... .+|+++...+..+++++.+.+.-.+.. .........||+++|||+...+.
T Consensus 2 ~~~~~~~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~d~d~~~~~ 81 (359)
T KOG0708|consen 2 SVNGVDGRNATHEDAAAALKTSGDSVYIRAQYRPEEYDKFELKIHDLEVLHVMDSMYQSRQEWRCLYVDALFDYDLDRGS 81 (359)
T ss_pred cccccccccchHHHHHHHhhcCCCceEEEEEechhhhchhhcccCCcchHHHHHhhhccCCCCceeEeeccccccccCCC
Confidence 4677777 689999999999999988777533322 01112346899999999998886
Q ss_pred CCCCccccceeccCCEEEEeecCCCCceEEEecCC---CCCCccccchhHHHhhhcccCCCcccccc---------ccc-
Q psy4417 113 LLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEP---TGPMGLVPSQELEERRKAFVPPEADYVHK---------IGI- 179 (440)
Q Consensus 113 ~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~---~~~~G~iPs~~~~~rr~~~~~~~~~~~gk---------~~~- 179 (440)
..+.. .++|..|+|+|+.+..+..||++|++.. ....|++|+..+.++|..+.....++..+ ...
T Consensus 82 ~~~~~--~~~~~~~~i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k~~~f~~~~~~~~~~s~d~~~ 159 (359)
T KOG0708|consen 82 PGYSR--AQSFLYGQILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLKRDSFNSGRDFPFLLSKDGLD 159 (359)
T ss_pred CCcch--hhhhhhhhhhhccccccHHHHHhhccCCCcccccccccccccccccccccccccccccccCCcccccCccccc
Confidence 55555 8999999999999999999999999833 35789999999999988877665543221 110
Q ss_pred --c-ccccccccccccccc-------------------------------ccCcccccCCCCCCCCCccCCCcceecCHH
Q psy4417 180 --C-GTRYIKQYNTLQYNS-------------------------------TLMSRSFPDTTRPMRELEENGQNYWFTSRE 225 (440)
Q Consensus 180 --~-~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~ 225 (440)
. .....+....+.|.. ..+..|++||+|+. ++
T Consensus 160 ~~~~~~~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~ 225 (359)
T KOG0708|consen 160 MSSDENELGKELSLLSYELVERLDSNYLRPVLILGPLLDRLLDNLVNEFPDKFKSCLPETLRPS--------------RE 225 (359)
T ss_pred ccccccccccccccccchhhhhhhccccCceEeccchHHHHHHHHHHhhhccccccchhhhccc--------------HH
Confidence 0 000000011111211 12337888888864 88
Q ss_pred HHHHhhhcCCeeEEEEEcCCccccchhhHHHHHhcCCeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCcccee
Q psy4417 226 VMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFF 305 (440)
Q Consensus 226 ~f~~~i~~~~fle~~~~~g~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~ 305 (440)
+|++.++++.||+++++++++|||+..+|++++++|+||||++++.|+++| ...++||++| ||
T Consensus 226 eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rL--------q~~~IyPIvI---------fI 288 (359)
T KOG0708|consen 226 EMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRL--------QRNQIYPIVI---------FI 288 (359)
T ss_pred HhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHH--------HhcceeceEE---------EE
Confidence 999999999999999999999999999999999999999999999999999 5589999999 77
Q ss_pred ecCCCcccchhhccCccccccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHH
Q psy4417 306 ASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEE 385 (440)
Q Consensus 306 ~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~ 385 (440)
.+.+ ....+..+ ...+.++.++.+++
T Consensus 289 r~ks---~~~i~e~~---------------------------------------------------~~~t~~~ake~~e~ 314 (359)
T KOG0708|consen 289 RVKS---KKQIKERN---------------------------------------------------LKITGEQAKELLER 314 (359)
T ss_pred Eech---HHHHHHHh---------------------------------------------------cccchHHHHHHHHH
Confidence 7777 44332110 02478899999999
Q ss_pred HHHHHHHhcCCccEEEEcCCHHHHHHHHHHHHHhccCCCeeeecc
Q psy4417 386 SACLQRSYERFIDKVIVNEDFDETFRTVIELLDTLSNKHQVDSRP 430 (440)
Q Consensus 386 ~~~~e~~~~~~fd~vi~Nddl~~a~~~l~~~i~~~~~~~~wvp~~ 430 (440)
+.++|+.|..+|..+|.-+++++.+.+++.+|..++.+..|||++
T Consensus 315 a~klEqe~~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~iWVp~~ 359 (359)
T KOG0708|consen 315 ARKLEQELDRYFTLVVQGGSLEELLSQVKDIIEDEQKKVIWVPAK 359 (359)
T ss_pred HHHhHhhhhhceEEEEecccHHHHHHHHHHHHHHhhCCeEeeeCC
Confidence 999999999999999999999999999999999999999999974
No 8
>KOG3580|consensus
Probab=99.95 E-value=3.5e-27 Score=237.55 Aligned_cols=347 Identities=16% Similarity=0.253 Sum_probs=242.8
Q ss_pred CCCeEEEEeeCCCCccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceeee
Q psy4417 5 PHPLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQFT 82 (440)
Q Consensus 5 ~~~r~v~l~r~g~~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l~ 82 (440)
|+.+-|.+ +.|..+|+.+.||++-+|||+-|..|+||+..| |++||+||.||.++. ...++++..|-...+.-.++
T Consensus 406 P~tk~VrF-~KGdSvGLRLAGGNDVGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevt 483 (1027)
T KOG3580|consen 406 PNTKMVRF-KKGDSVGLRLAGGNDVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVT 483 (1027)
T ss_pred CCceeEEe-ecCCeeeeEeccCCceeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEe
Confidence 55555555 567889999999999999999999999999999 999999999999999 67788888887664443444
Q ss_pred eccCCCC------CCCCCCccccccccccCCCCCCCCCCCccccceeccCCEEEEeec---CCCCceEEEecCCC---CC
Q psy4417 83 IAPQGDD------ASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ---KDPNWWQAQLIEPT---GP 150 (440)
Q Consensus 83 v~p~~~~------~~~~~~~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~---~d~~ww~a~~~~~~---~~ 150 (440)
++.+... -...-+++||+|++|.|++.... +|+|.+||+|+|+|+ +..+-|-|-++|++ ..
T Consensus 484 ilaQ~k~Dvyr~iv~s~vGDSFyIRtHFE~Eke~P~-------gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~E 556 (1027)
T KOG3580|consen 484 ILAQSKADVYRDIVASGVGDSFYIRTHFECEKETPQ-------GLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELE 556 (1027)
T ss_pred ehhhhhhHHHHHHHhccCCceeEEeeeeeecCCCCc-------cccccccceeeeeecccCCCCcceEEEeecccHHHHh
Confidence 4443321 11234689999999999998776 999999999999994 44556888888764 57
Q ss_pred CccccchhHHHhhhcccCCCccccc-ccc----cccc------cccccccccccccccCcccccCCCCCCCCCccCCCcc
Q psy4417 151 MGLVPSQELEERRKAFVPPEADYVH-KIG----ICGT------RYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNY 219 (440)
Q Consensus 151 ~G~iPs~~~~~rr~~~~~~~~~~~g-k~~----~~~~------~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y 219 (440)
.|+||++.++||...++.......| -.. +.|. .+++.+..+ .+++..|+.|--..+-.++-
T Consensus 557 rGiIPNksRAEQlASvq~aqr~~agGdRAdFWR~RGlRsg~KknlrkSREDL--------sA~~vqtkfPaYERVvLREA 628 (1027)
T KOG3580|consen 557 RGIIPNKSRAEQLASVQNAQRDNAGGDRADFWRMRGLRSGVKKNLRKSREDL--------SAVVVQTKFPAYERVVLREA 628 (1027)
T ss_pred cccCCCccHHHHHHHHHhhccccccchHHHHHHHhhhhhhhhhhhhhhhhhh--------hhceecccCCchhhhhhhhh
Confidence 8999999999987665543333222 111 0010 011111222 34556666664333334443
Q ss_pred ee---------cCHHHHHHhhhc-CCeeEEEEEc----CCc---cccchhhHHHHHhcCCeEEeecCcchhhhhhhhhcc
Q psy4417 220 WF---------TSREVMERDIQD-HKFLEYGEHN----GHL---YGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIE 282 (440)
Q Consensus 220 ~f---------vs~~~f~~~i~~-~~fle~~~~~----g~~---yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~ 282 (440)
.| +..-.|+++... -+..+.++-. |.. --+.+..|+.++++.||.+|++.|.++..|
T Consensus 629 gFkRPVvifGPiADiAmeKLa~E~PD~fqiAkteprdag~~~stg~irL~TvrqiieqDKHALLDVTP~AvdrL------ 702 (1027)
T KOG3580|consen 629 GFKRPVVIFGPIADIAMEKLANELPDWFQIAKTEPRDAGSEKSTGVIRLNTVRQIIEQDKHALLDVTPKAVDRL------ 702 (1027)
T ss_pred cccCceEEeccHHHHHHHHHhhhCcchhhhhccccccCCcccccceEEehhhHHHHhcccchhhccCHHHHhhh------
Confidence 44 333444444321 1111222211 111 123588999999999999999999999999
Q ss_pred ccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHH
Q psy4417 283 GTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVI 362 (440)
Q Consensus 283 ~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~ 362 (440)
...+.||++| |+.|.+....+.+...
T Consensus 703 --NY~QwypIVv---------ff~PdSrqgvktmRqr------------------------------------------- 728 (1027)
T KOG3580|consen 703 --NYTQWYPIVV---------FFNPDSRQGVKTMRQR------------------------------------------- 728 (1027)
T ss_pred --ccceeeeEEE---------EeCCcchHHHHHHHHH-------------------------------------------
Confidence 7788999999 8888772222222211
Q ss_pred hcCCeeEecCCCcHHHHHHHHHHHHHHHHHhcCCccEEE-EcCCHHHHHHHHHHHHHhccCCCeeeeccceeccc
Q psy4417 363 LSGKICVLDCSPVEEDIKRTLEESACLQRSYERFIDKVI-VNEDFDETFRTVIELLDTLSNKHQVDSRPTILMVK 436 (440)
Q Consensus 363 ~~~~~~i~~~~~s~e~l~~~l~~~~~~e~~~~~~fd~vi-~Nddl~~a~~~l~~~i~~~~~~~~wvp~~w~~~~~ 436 (440)
..|.|...-++..+.+.++.+...|+|+.+| .|.--|..|..|+.+|..+++++.||...=|.+..
T Consensus 729 --------L~P~Sr~SsRkLy~~a~KL~K~~~HLFTaTInLNs~nD~Wyg~LK~~iq~QQ~~~vWvsEgk~dG~~ 795 (1027)
T KOG3580|consen 729 --------LAPTSRKSSRKLYDQANKLKKTCAHLFTATINLNSANDSWYGSLKDTIQHQQGEAVWVSEGKMDGMD 795 (1027)
T ss_pred --------hCcccchhHHHHHHHHHHHhhhchhheEeeeccCCCChhHHHHHHHHHHHhcCceeEeecccccCcc
Confidence 1245666677777888999999999999999 47778999999999999999999999877665543
No 9
>KOG0707|consensus
Probab=99.92 E-value=1.3e-25 Score=207.24 Aligned_cols=181 Identities=25% Similarity=0.372 Sum_probs=152.3
Q ss_pred cccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEcC
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNG 244 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~g 244 (440)
.+++.|++++||.++.+.++......+. ++++||||.||++|++|.+|||+++++|+.++++++|+||+.+.|
T Consensus 39 ~ivl~gpsg~gk~tll~~l~ee~~~~~~-------fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~g 111 (231)
T KOG0707|consen 39 PIVLSGPSGVGKSTLLKRLREELGGMFG-------FSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSG 111 (231)
T ss_pred eEEEeCCCCcchhHHHHHHHHHcCCcce-------EEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhc
Confidence 4567899999999999877665444344 699999999999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHhcCCeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCcccc
Q psy4417 245 HLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYW 324 (440)
Q Consensus 245 ~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~ 324 (440)
++||+++++|+++...|+.|+++++.+|+..+ +...+.+.++ |+.|+. ...+|.++.
T Consensus 112 n~yGtsi~av~~~~~~gk~~ildId~qg~~~i--------~~~~~~~i~i---------~~~pps---~~~~e~rl~--- 168 (231)
T KOG0707|consen 112 NKYGTSIAAVQRLMLSGKVCILDIDLQGVQPI--------RATSLDAIYI---------FIKPPS---IKILEERLR--- 168 (231)
T ss_pred ccCCchHHHHHHHHhcCCcceeehhhcCceee--------ecCCCceEEE---------EecCCc---chhHHHHhh---
Confidence 99999999999999999999999999999988 5455666666 888887 666665432
Q ss_pred ccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHHHHHHHHHhcC---CccEEE
Q psy4417 325 FTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESACLQRSYER---FIDKVI 401 (440)
Q Consensus 325 f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~~~e~~~~~---~fd~vi 401 (440)
.+|| .++++|.+|++ +++.+..+.. .||++|
T Consensus 169 -------------------------~rgt--------------------e~~~~l~~r~~-sa~~e~~~~~~~g~~d~~~ 202 (231)
T KOG0707|consen 169 -------------------------ARGT--------------------ETEESLLKRLK-SAEEEFEILENSGSFDLVI 202 (231)
T ss_pred -------------------------ccCc--------------------chHHHHHHHHH-hhhhhhccccCCcccccee
Confidence 1244 36899999999 6667766554 599999
Q ss_pred Ec-CCHHHHHHHHHHHHHhcc
Q psy4417 402 VN-EDFDETFRTVIELLDTLS 421 (440)
Q Consensus 402 ~N-ddl~~a~~~l~~~i~~~~ 421 (440)
+| +++++|+.+|..++....
T Consensus 203 ~ns~~lee~~kel~~~~~~~~ 223 (231)
T KOG0707|consen 203 VNSDRLEEAYKELEIFISSDD 223 (231)
T ss_pred cCCCchhhhhhhhhhhhhHHH
Confidence 99 999999999999887543
No 10
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.91 E-value=1e-23 Score=197.46 Aligned_cols=181 Identities=23% Similarity=0.325 Sum_probs=144.2
Q ss_pred hhcccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEE
Q psy4417 163 RKAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEH 242 (440)
Q Consensus 163 r~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~ 242 (440)
.+.+++.||+++||++++..+... ...+. +++++|||+||++|.+|.+|+|+|+++|++++.++.|+||+++
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~-~~~~~-------~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~ 84 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER-KLPFH-------FVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEV 84 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc-CCccc-------ccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEE
Confidence 456778999999999999877543 23444 4999999999999999999999999999999999999999999
Q ss_pred cCCccccchhhHHHHHhcCCeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCcc
Q psy4417 243 NGHLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQN 322 (440)
Q Consensus 243 ~g~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~ 322 (440)
.|++|||+.++|+.++++|++||++++++|+..| .+.+|..++| |+.|++ ...++.+
T Consensus 85 ~g~~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l----------~~~~pd~~~i-------f~~pps---~e~l~~R--- 141 (206)
T PRK14738 85 YGNYYGVPKAPVRQALASGRDVIVKVDVQGAASI----------KRLVPEAVFI-------FLAPPS---MDELTRR--- 141 (206)
T ss_pred cCceecCCHHHHHHHHHcCCcEEEEcCHHHHHHH----------HHhCCCeEEE-------EEeCCC---HHHHHHH---
Confidence 9999999999999999999999999999999888 3556766656 888877 3333211
Q ss_pred ccccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHHHHHHHHHhcCCccEEEE
Q psy4417 323 YWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESACLQRSYERFIDKVIV 402 (440)
Q Consensus 323 y~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~~~e~~~~~~fd~vi~ 402 (440)
+.. .+ ..+.+++++|+..... +......||++++
T Consensus 142 -----------l~~---------------------------R~-------~~~~~~~~~Rl~~~~~-e~~~~~~~~~~iI 175 (206)
T PRK14738 142 -----------LEL---------------------------RR-------TESPEELERRLATAPL-ELEQLPEFDYVVV 175 (206)
T ss_pred -----------HHH---------------------------cC-------CCCHHHHHHHHHHHHH-HHhcccCCCEEEE
Confidence 100 01 0146788889987532 3333445899999
Q ss_pred c--CCHHHHHHHHHHHHHhc
Q psy4417 403 N--EDFDETFRTVIELLDTL 420 (440)
Q Consensus 403 N--ddl~~a~~~l~~~i~~~ 420 (440)
| ++++++++++.++|...
T Consensus 176 d~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 176 NPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 8 57999999999999754
No 11
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.87 E-value=4e-22 Score=178.84 Aligned_cols=109 Identities=34% Similarity=0.559 Sum_probs=94.4
Q ss_pred cCCeEEeecCcch--hhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHc
Q psy4417 260 SGKICVLDCSPVG--LFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQD 337 (440)
Q Consensus 260 ~g~~~il~~~~~g--~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~ 337 (440)
+|++++| .+|+| ..+|++.|++.+ .+ . |.+++|||++|++|++|+||||+|+++|++|++.
T Consensus 3 ~G~l~vl-sgPSG~GKsTl~k~L~~~~---~l---~----------~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~ 65 (191)
T COG0194 3 KGLLIVL-SGPSGVGKSTLVKALLEDD---KL---R----------FSVSATTRKPRPGEVDGVDYFFVTEEEFEELIER 65 (191)
T ss_pred CceEEEE-ECCCCCCHHHHHHHHHhhc---Ce---E----------EEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhc
Confidence 5665555 45555 577888888765 22 2 6679999999999999999999999999999999
Q ss_pred CceeeEEEEcCccccccHHHHHHHHhcCCee---------------------EecCCCcHHHHHHHHHH
Q psy4417 338 HKFLEYGEHNGHLYGTHLDSIREVILSGKIC---------------------VLDCSPVEEDIKRTLEE 385 (440)
Q Consensus 338 ~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~---------------------i~~~~~s~e~l~~~l~~ 385 (440)
++||||++|+||+|||+...|+..++.|+.+ ||+.|||.++|++||..
T Consensus 66 ~~fLE~a~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~ 134 (191)
T COG0194 66 DEFLEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKG 134 (191)
T ss_pred CCcEEEEEEcCCcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHc
Confidence 9999999999999999999999999999975 45679999999999984
No 12
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.83 E-value=1.8e-20 Score=164.25 Aligned_cols=104 Identities=30% Similarity=0.393 Sum_probs=94.6
Q ss_pred ccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEcCC
Q psy4417 166 FVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGH 245 (440)
Q Consensus 166 ~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~g~ 245 (440)
+.+.||+++||.++...+.+.....+. .++++|||+|+++|.+|++|+|++.++|.+++.++.|++++++.|+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~-------~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~ 74 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFG-------FSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGN 74 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccce-------ecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCE
Confidence 346799999999988877654333444 4899999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHhcCCeEEeecCcchhhhh
Q psy4417 246 LYGTHLDSIREVILSGKICVLDCSPVGLFTF 276 (440)
Q Consensus 246 ~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l 276 (440)
+||++.++|++++++|++||+++++.|++.|
T Consensus 75 ~yg~~~~~i~~~~~~g~~~il~~~~~~~~~l 105 (137)
T cd00071 75 YYGTSKAAVEEALAEGKIVILEIDVQGARQV 105 (137)
T ss_pred EecCcHHHHHHHHhCCCeEEEEecHHHHHHH
Confidence 9999999999999999999999999999999
No 13
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.82 E-value=1.3e-19 Score=165.62 Aligned_cols=177 Identities=27% Similarity=0.332 Sum_probs=139.5
Q ss_pred cccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEcC
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNG 244 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~g 244 (440)
.+.+.||+++||.++...+...... +. ..+++|||+|+.++.+|.+|+|++.++|..++..+.|+++.++.+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~-~~-------~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN-LK-------FSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHG 74 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc-cc-------ccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECC
Confidence 3556799999999988876554222 32 378999999999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHhcCCeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCcccc
Q psy4417 245 HLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYW 324 (440)
Q Consensus 245 ~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~ 324 (440)
+.||++.+.|++++++|++||+++++.|...+. .....+..| |+.++. ....+.+
T Consensus 75 ~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~--------~~~~~~~~i---------~~~~~~---~e~~~~R----- 129 (180)
T TIGR03263 75 NYYGTPKSPVEEALAAGKDVLLEIDVQGARQVK--------KKFPDAVSI---------FILPPS---LEELERR----- 129 (180)
T ss_pred eeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHH--------HhCCCcEEE---------EEECCC---HHHHHHH-----
Confidence 999999999999999999999999999998873 222234455 776665 3232211
Q ss_pred ccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHHHHHHHHHhcCCccEEEEcC
Q psy4417 325 FTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESACLQRSYERFIDKVIVNE 404 (440)
Q Consensus 325 f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd 404 (440)
+ ..++ ..+.+++++|++... .+..+.+.||++|.|+
T Consensus 130 ---------l---------------------------~~r~-------~~~~~~i~~rl~~~~-~~~~~~~~~d~~i~n~ 165 (180)
T TIGR03263 130 ---------L---------------------------RKRG-------TDSEEVIERRLAKAK-KEIAHADEFDYVIVND 165 (180)
T ss_pred ---------H---------------------------HHcC-------CCCHHHHHHHHHHHH-HHHhccccCcEEEECC
Confidence 0 0111 125778999997653 4456778899999999
Q ss_pred CHHHHHHHHHHHHH
Q psy4417 405 DFDETFRTVIELLD 418 (440)
Q Consensus 405 dl~~a~~~l~~~i~ 418 (440)
|+++++.+|++++.
T Consensus 166 ~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 166 DLEKAVEELKSIIL 179 (180)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999885
No 14
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.80 E-value=1.8e-19 Score=165.89 Aligned_cols=93 Identities=30% Similarity=0.473 Sum_probs=79.5
Q ss_pred EeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCceeeEE
Q psy4417 265 VLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYG 344 (440)
Q Consensus 265 il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle~~ 344 (440)
|++.+.+|..+|++.|++.. |... |..+||||++|++|++|+||||+|+++|++++++|+|+||+
T Consensus 9 l~GpsG~GK~tl~~~l~~~~------~~~~---------~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~ 73 (186)
T PRK14737 9 ISSVAGGGKSTIIQALLEEH------PDFL---------FSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWA 73 (186)
T ss_pred EECCCCCCHHHHHHHHHhcC------Cccc---------cccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEE
Confidence 33344445678988887542 3333 67799999999999999999999999999999999999999
Q ss_pred EEcCccccccHHHHHHHHhcCCeeEecC
Q psy4417 345 EHNGHLYGTHLDSIREVILSGKICVLDC 372 (440)
Q Consensus 345 ~~~~~~yGt~~~~i~~~~~~~~~~i~~~ 372 (440)
+|+|++|||++++|+..++.|++|++++
T Consensus 74 ~~~g~~YGt~~~~i~~~~~~g~~~i~d~ 101 (186)
T PRK14737 74 EVHDNYYGTPKAFIEDAFKEGRSAIMDI 101 (186)
T ss_pred EECCeeecCcHHHHHHHHHcCCeEEEEc
Confidence 9999999999999999999999987653
No 15
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.79 E-value=1.2e-18 Score=162.64 Aligned_cols=180 Identities=26% Similarity=0.311 Sum_probs=141.9
Q ss_pred cccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEcC
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNG 244 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~g 244 (440)
.+.+.|++++||.+++..+..... .+. ..+++|||+|+.+|.+|.+|+|++.++|.+++..+.|++++++.+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~-~~~-------~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP-NLQ-------LSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFG 78 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc-cce-------eccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECC
Confidence 456789999999998877655432 333 488999999999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHhcCCeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCcccc
Q psy4417 245 HLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYW 324 (440)
Q Consensus 245 ~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~ 324 (440)
+.||++.++|+++++.|++||+++++.|...+++ ....+.+| |+.+++ ....+.+
T Consensus 79 ~~y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~--------~~~~~~~I---------~i~~~s---~~~l~~R----- 133 (205)
T PRK00300 79 NYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKK--------KMPDAVSI---------FILPPS---LEELERR----- 133 (205)
T ss_pred ccccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHH--------hCCCcEEE---------EEECcC---HHHHHHH-----
Confidence 9999999999999999999999999999988732 11233445 777776 3333211
Q ss_pred ccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHHHHHHHHHhcCCccEEEEcC
Q psy4417 325 FTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESACLQRSYERFIDKVIVNE 404 (440)
Q Consensus 325 f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd 404 (440)
+ ...+ ..+.+.+++|+.... .+..+.+.||++|+|+
T Consensus 134 ---------l---------------------------~~R~-------~~~~~~i~~rl~~~~-~~~~~~~~~d~vi~n~ 169 (205)
T PRK00300 134 ---------L---------------------------RGRG-------TDSEEVIARRLAKAR-EEIAHASEYDYVIVND 169 (205)
T ss_pred ---------H---------------------------HhcC-------CCCHHHHHHHHHHHH-HHHHhHHhCCEEEECC
Confidence 0 0111 025788888888743 4455667799999999
Q ss_pred CHHHHHHHHHHHHHhcc
Q psy4417 405 DFDETFRTVIELLDTLS 421 (440)
Q Consensus 405 dl~~a~~~l~~~i~~~~ 421 (440)
|+++++.+|..++....
T Consensus 170 ~~e~~~~~l~~il~~~~ 186 (205)
T PRK00300 170 DLDTALEELKAIIRAER 186 (205)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998763
No 16
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.74 E-value=5e-18 Score=155.93 Aligned_cols=98 Identities=37% Similarity=0.512 Sum_probs=78.8
Q ss_pred CCe-EEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCc
Q psy4417 261 GKI-CVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHK 339 (440)
Q Consensus 261 g~~-~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~ 339 (440)
+++ ||++.+.+|..+|++.|++..+ . .+. ++.++|||++|++|.+|++|||||+++|++|+++|+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~-~----~~~---------~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~ 67 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP-D----KFG---------RVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGE 67 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST-T----TEE---------EEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc-c----ccc---------cceeecccCCcccccCCcceEEEeechhhhhhcccc
Confidence 444 4445555567889888886643 1 122 677999999999999999999999999999999999
Q ss_pred eeeEEEEcCccccccHHHHHHHHhcCCeeEecC
Q psy4417 340 FLEYGEHNGHLYGTHLDSIREVILSGKICVLDC 372 (440)
Q Consensus 340 fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~ 372 (440)
|+||+++.|++|||+.++|+.++++|++|++++
T Consensus 68 fie~~~~~g~~YGt~~~~i~~~~~~gk~~il~~ 100 (183)
T PF00625_consen 68 FIEYGEYDGNYYGTSKSAIDKVLEEGKHCILDV 100 (183)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTTEEEEEE
T ss_pred EEEEeeecchhhhhccchhhHhhhcCCcEEEEc
Confidence 999999999999999999999999999987654
No 17
>KOG0609|consensus
Probab=99.71 E-value=1.1e-17 Score=169.46 Aligned_cols=111 Identities=41% Similarity=0.566 Sum_probs=91.0
Q ss_pred ccchhhHHHHHhcC--CeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccc
Q psy4417 248 GTHLDSIREVILSG--KICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWF 325 (440)
Q Consensus 248 g~~~~~i~~v~~~g--~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f 325 (440)
+.+.+.|-.....+ .+++++....|...|+++|++.++ ..|. ..+|||||++|..|.+|++|||
T Consensus 326 ~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p-~~f~-------------~~VPhTtR~~r~~E~dG~eY~F 391 (542)
T KOG0609|consen 326 LLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNP-DRFG-------------TAVPHTTRPPRSDEVDGVEYHF 391 (542)
T ss_pred cccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCc-cccc-------------cCCCCcCCCCCCCCCCCcccee
Confidence 34445554443333 356666666678899999998765 2221 4569999999999999999999
Q ss_pred cCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecC
Q psy4417 326 TSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDC 372 (440)
Q Consensus 326 ~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~ 372 (440)
||+++|++++++|+|||||+|.+|+|||+.++|+.++++||+|+||.
T Consensus 392 VSk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv 438 (542)
T KOG0609|consen 392 VSKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDV 438 (542)
T ss_pred eehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEEEec
Confidence 99999999999999999999999999999999999999999987764
No 18
>PLN02772 guanylate kinase
Probab=99.69 E-value=5.6e-17 Score=162.57 Aligned_cols=91 Identities=42% Similarity=0.664 Sum_probs=78.1
Q ss_pred cCcch--hhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCceeeEEE
Q psy4417 268 CSPVG--LFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGE 345 (440)
Q Consensus 268 ~~~~g--~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle~~~ 345 (440)
++|+| ..+|++.|++... .... |..+||||++|++|.+|+||||+++++|++++++|+|+||++
T Consensus 141 sGPSGvGKsTL~~~L~~~~p-----~~~~---------~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e 206 (398)
T PLN02772 141 SGPSGVGKGTLISMLMKEFP-----SMFG---------FSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFAS 206 (398)
T ss_pred ECCCCCCHHHHHHHHhhhcc-----cccc---------ccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeee
Confidence 55554 6778888875421 1122 677999999999999999999999999999999999999999
Q ss_pred EcCccccccHHHHHHHHhcCCeeEecC
Q psy4417 346 HNGHLYGTHLDSIREVILSGKICVLDC 372 (440)
Q Consensus 346 ~~~~~yGt~~~~i~~~~~~~~~~i~~~ 372 (440)
++|++|||++++|+.++++|+.|+|++
T Consensus 207 ~~Gn~YGTsk~~V~~vl~~Gk~vILdL 233 (398)
T PLN02772 207 VHGNLYGTSIEAVEVVTDSGKRCILDI 233 (398)
T ss_pred ecCccccccHHHHHHHHHhCCcEEEeC
Confidence 999999999999999999999987654
No 19
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.69 E-value=1.5e-16 Score=146.33 Aligned_cols=109 Identities=42% Similarity=0.586 Sum_probs=89.3
Q ss_pred eEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCceee
Q psy4417 263 ICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLE 342 (440)
Q Consensus 263 ~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle 342 (440)
++|++.+.+|..+|+..|++..+ +.+. ++.++|||++|++|.+|.+|+|+|+++|++++++|+|+|
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~~-----~~~~---------~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve 70 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEIP-----DAFE---------RVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLE 70 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC-----cceE---------eeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEE
Confidence 34444444567888887875532 1233 788999999999999999999999999999999999999
Q ss_pred EEEEcCccccccHHHHHHHHhcCCeeEec---------------------CCCcHHHHHHHHHH
Q psy4417 343 YGEHNGHLYGTHLDSIREVILSGKICVLD---------------------CSPVEEDIKRTLEE 385 (440)
Q Consensus 343 ~~~~~~~~yGt~~~~i~~~~~~~~~~i~~---------------------~~~s~e~l~~~l~~ 385 (440)
|++++|++|||++++|+++++.|+.|+++ .||+.++|++|+..
T Consensus 71 ~~~~~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~ 134 (184)
T smart00072 71 WGEYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRG 134 (184)
T ss_pred EEEEcCcCcccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHh
Confidence 99999999999999999999999997765 35667777776653
No 20
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.58 E-value=7.9e-15 Score=137.33 Aligned_cols=110 Identities=27% Similarity=0.392 Sum_probs=89.2
Q ss_pred CC-eEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCc
Q psy4417 261 GK-ICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHK 339 (440)
Q Consensus 261 g~-~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~ 339 (440)
++ ++|++.+..|..+|++.|.+. .+.+. |+.++|||++|++|.+|.+|||+++++|++++.+++
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~------~~~~~---------~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~ 77 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER------KLPFH---------FVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNE 77 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc------CCccc---------ccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCC
Confidence 44 445555666678888777533 12233 778999999999999999999999999999999999
Q ss_pred eeeEEEEcCccccccHHHHHHHHhcCCeeEe---------------------cCCCcHHHHHHHHHH
Q psy4417 340 FLEYGEHNGHLYGTHLDSIREVILSGKICVL---------------------DCSPVEEDIKRTLEE 385 (440)
Q Consensus 340 fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~---------------------~~~~s~e~l~~~l~~ 385 (440)
|+||.++.|++|||+.+.|+..++.|+.|++ +.|++.+++.+|+..
T Consensus 78 ~le~~~~~g~~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~ 144 (206)
T PRK14738 78 LLEWAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLEL 144 (206)
T ss_pred cEEEEEEcCceecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHH
Confidence 9999999999999999999999999997655 346667777766654
No 21
>KOG0707|consensus
Probab=99.44 E-value=1.1e-13 Score=128.28 Aligned_cols=104 Identities=32% Similarity=0.533 Sum_probs=88.3
Q ss_pred cCcch--hhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCceeeEEE
Q psy4417 268 CSPVG--LFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGE 345 (440)
Q Consensus 268 ~~~~g--~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle~~~ 345 (440)
.+|+| -.+|++.|++.... . ++|.++||||.+|.+|++|+||||++.++|+.|+..++|+||++
T Consensus 43 ~gpsg~gk~tll~~l~ee~~~-------~-------~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~ 108 (231)
T KOG0707|consen 43 SGPSGVGKSTLLKRLREELGG-------M-------FGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFAT 108 (231)
T ss_pred eCCCCcchhHHHHHHHHHcCC-------c-------ceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhh
Confidence 55555 46677767655331 1 22889999999999999999999999999999999999999999
Q ss_pred EcCccccccHHHHHHHHhcCCeeEec---------------------CCCcHHHHHHHHHH
Q psy4417 346 HNGHLYGTHLDSIREVILSGKICVLD---------------------CSPVEEDIKRTLEE 385 (440)
Q Consensus 346 ~~~~~yGt~~~~i~~~~~~~~~~i~~---------------------~~~s~e~l~~~l~~ 385 (440)
+.|++|||+.+++++....|+.|+++ +||+...+++|+..
T Consensus 109 ~~gn~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~ 169 (231)
T KOG0707|consen 109 FSGNKYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRA 169 (231)
T ss_pred hhcccCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhc
Confidence 99999999999999999999987653 47888888888875
No 22
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.34 E-value=3.1e-12 Score=112.05 Aligned_cols=134 Identities=34% Similarity=0.473 Sum_probs=104.0
Q ss_pred eEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCceee
Q psy4417 263 ICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLE 342 (440)
Q Consensus 263 ~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle 342 (440)
++|++.+.+|..+|++.|... +.+... ++.++|||+++.+|.+|++|+|++.++|.+++..++|+|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~-----~~~~~~---------~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e 67 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE-----FDPNFG---------FSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLE 67 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc-----CCccce---------ecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEE
Confidence 466777777888887777533 222233 778999999999999999999999999999999999999
Q ss_pred EEEEcCccccccHHHHHHHHhcCCeeEecCCCcHHHHHHHHHHHH-HHHHHhcCCccEEEEcCCHHHHHHHH
Q psy4417 343 YGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESA-CLQRSYERFIDKVIVNEDFDETFRTV 413 (440)
Q Consensus 343 ~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~-~~e~~~~~~fd~vi~Nddl~~a~~~l 413 (440)
|+++.+++||++.+.|++++++|+.+++++.+ +-+ +++++.. +...-|-..-|++|+|||++.++++|
T Consensus 68 ~~~~~~~~yg~~~~~i~~~~~~g~~~il~~~~--~~~-~~l~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~ 136 (137)
T cd00071 68 WAEFHGNYYGTSKAAVEEALAEGKIVILEIDV--QGA-RQVKKSYPDAVSIFILPPDYVIVNDDLEKAYEEL 136 (137)
T ss_pred EEEEcCEEecCcHHHHHHHHhCCCeEEEEecH--HHH-HHHHHcCCCeEEEEEECCCeEEeCCCHHHHHHhh
Confidence 99999999999999999999999999998732 222 2222211 00001223449999999999999987
No 23
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.34 E-value=1.9e-12 Score=119.25 Aligned_cols=101 Identities=16% Similarity=0.039 Sum_probs=78.5
Q ss_pred cccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEcC
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNG 244 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~g 244 (440)
.+++.||+|+||+|+.+.+.......+. .....+||+++.. +.+|+|++.++|.++++++.|.+++.++|
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 73 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLL-------VAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANG 73 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEE-------EcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhhHHHHhC
Confidence 4567899999999988876544333333 3566778876654 67899999999999999999998999999
Q ss_pred CccccchhhHHHHHhcCCeEEeecCcchhhhh
Q psy4417 245 HLYGTHLDSIREVILSGKICVLDCSPVGLFTF 276 (440)
Q Consensus 245 ~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l 276 (440)
++|||+. ++++.++.|+.+|++.+......+
T Consensus 74 ~~yg~~~-~~~~~l~~g~~VI~~G~~~~~~~~ 104 (186)
T PRK10078 74 LYYGVGI-EIDLWLHAGFDVLVNGSRAHLPQA 104 (186)
T ss_pred CccCCcH-HHHHHHhCCCEEEEeChHHHHHHH
Confidence 9999998 699999999998875443333334
No 24
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.28 E-value=2.3e-11 Score=110.98 Aligned_cols=101 Identities=17% Similarity=0.086 Sum_probs=81.3
Q ss_pred cccCCCccccccccccccccccc--ccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEE
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQ--YNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEH 242 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~ 242 (440)
.+++.|++++||+++...+.... ...+. +..++|||+++ .+|.+|+|++.++|..++.++.|.++.++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~~~~~~-------~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAGDPRVH-------FVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQA 72 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCcCCcEE-------EeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEee
Confidence 45678999999999886543321 11233 36889998764 46999999999999999999999999999
Q ss_pred cCCccccchhhHHHHHhcCCeEEeecCcchhhhh
Q psy4417 243 NGHLYGTHLDSIREVILSGKICVLDCSPVGLFTF 276 (440)
Q Consensus 243 ~g~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l 276 (440)
.+++||++. .+...+++|..||++.+..+...+
T Consensus 73 ~~~~~g~~~-~i~~~~~~g~~vv~~g~~~~~~~~ 105 (179)
T TIGR02322 73 HGLSYGIPA-EIDQWLEAGDVVVVNGSRAVLPEA 105 (179)
T ss_pred cCccccChH-HHHHHHhcCCEEEEECCHHHHHHH
Confidence 999999997 588888999999999887766555
No 25
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.26 E-value=3.8e-11 Score=95.19 Aligned_cols=75 Identities=27% Similarity=0.524 Sum_probs=67.9
Q ss_pred EEEEee-CCCCccEEEEecCCC---cEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceeee
Q psy4417 9 KKILGT-GLSPCGLTVEQDANG---NLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQFT 82 (440)
Q Consensus 9 ~v~l~r-~g~~lGiti~~~~~~---~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l~ 82 (440)
+|++.| .+.+|||++.++.+. +++|..|.++|+|+++| |+.||+|++|||.++ .+++++..+++.+++.++|+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~ 79 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT 79 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence 367777 778999999988764 69999999999999999 999999999999999 78999999999999899888
Q ss_pred ec
Q psy4417 83 IA 84 (440)
Q Consensus 83 v~ 84 (440)
|.
T Consensus 80 V~ 81 (81)
T PF00595_consen 80 VQ 81 (81)
T ss_dssp EE
T ss_pred EC
Confidence 73
No 26
>KOG3550|consensus
Probab=99.23 E-value=2.3e-11 Score=104.29 Aligned_cols=84 Identities=26% Similarity=0.367 Sum_probs=77.0
Q ss_pred CCCeEEEEeeCCCCccEEEEecCC--CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCcee
Q psy4417 5 PHPLKKILGTGLSPCGLTVEQDAN--GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQ 80 (440)
Q Consensus 5 ~~~r~v~l~r~g~~lGiti~~~~~--~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~ 80 (440)
.+||.|.+-|..++|||.+.||+. ..|||++|+|||.|++.|-|+.||++++|||+++ ..|+.+..+|+.+.+.+.
T Consensus 89 ahprvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvk 168 (207)
T KOG3550|consen 89 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVK 168 (207)
T ss_pred CCCceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEE
Confidence 578899999999999999999865 5599999999999999999999999999999999 789999999999999999
Q ss_pred eeeccCCC
Q psy4417 81 FTIAPQGD 88 (440)
Q Consensus 81 l~v~p~~~ 88 (440)
|.|+-.+.
T Consensus 169 lvvrytpk 176 (207)
T KOG3550|consen 169 LVVRYTPK 176 (207)
T ss_pred EEEecChH
Confidence 99876553
No 27
>PRK08356 hypothetical protein; Provisional
Probab=99.11 E-value=3.4e-11 Score=111.76 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=66.1
Q ss_pred cccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEcC
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNG 244 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~g 244 (440)
.+.+.|++++||++++..+ .+ ..+ ..++++++.++..+.+|.+|+|++...|+.++..+.|++++++.+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l-~~--~g~--------~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~ 75 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFF-EE--KGF--------CRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLK 75 (195)
T ss_pred EEEEECCCCCCHHHHHHHH-HH--CCC--------cEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHH
Confidence 4567899999999999877 32 333 378999999999999999999999999999999999999999999
Q ss_pred Cccccc
Q psy4417 245 HLYGTH 250 (440)
Q Consensus 245 ~~yg~~ 250 (440)
+.||++
T Consensus 76 ~~yG~~ 81 (195)
T PRK08356 76 EKYGED 81 (195)
T ss_pred HhcCcH
Confidence 999987
No 28
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.08 E-value=1.6e-09 Score=98.70 Aligned_cols=96 Identities=35% Similarity=0.498 Sum_probs=81.2
Q ss_pred eEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCceee
Q psy4417 263 ICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLE 342 (440)
Q Consensus 263 ~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle 342 (440)
++|++.+.+|..+|++.|... .|... +..+++||+++.++.+|.+|+|++.++|.+++..++|++
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~------~~~~~---------~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEE------DPNLK---------FSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLE 68 (180)
T ss_pred EEEECCCCCCHHHHHHHHHcc------Ccccc---------ccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEE
Confidence 556666666778887766532 23333 456899999999999999999999999999999999999
Q ss_pred EEEEcCccccccHHHHHHHHhcCCeeEecCC
Q psy4417 343 YGEHNGHLYGTHLDSIREVILSGKICVLDCS 373 (440)
Q Consensus 343 ~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~ 373 (440)
+.++.+++||++.+.|++.+++|+.++++..
T Consensus 69 ~~~~~~~~y~~~~~~i~~~~~~g~~vi~d~~ 99 (180)
T TIGR03263 69 WAEVHGNYYGTPKSPVEEALAAGKDVLLEID 99 (180)
T ss_pred EEEECCeeeCCcHHHHHHHHHCCCeEEEECC
Confidence 9999999999999999999999999988753
No 29
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.04 E-value=2.8e-09 Score=99.26 Aligned_cols=100 Identities=33% Similarity=0.460 Sum_probs=82.8
Q ss_pred hcCC-eEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHc
Q psy4417 259 LSGK-ICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQD 337 (440)
Q Consensus 259 ~~g~-~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~ 337 (440)
++|+ ++|++.+.+|..+|++.|... .|.+. +..++|||+++.++.+|.+|+|++.++|.+++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~------~~~~~---------~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~ 67 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER------DPNLQ---------LSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIEN 67 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh------Cccce---------eccCccccCCCCCCcCCCeeEEcCHHHHHHHHHc
Confidence 4555 455555666777776666532 33233 6778999999999999999999999999999999
Q ss_pred CceeeEEEEcCccccccHHHHHHHHhcCCeeEecCC
Q psy4417 338 HKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCS 373 (440)
Q Consensus 338 ~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~ 373 (440)
++|++++++.++.||++.+.|+..+..|+.++++..
T Consensus 68 ~~~~~~~~~~~~~y~~~~~~i~~~l~~g~~vi~dl~ 103 (205)
T PRK00300 68 GEFLEWAEVFGNYYGTPRSPVEEALAAGKDVLLEID 103 (205)
T ss_pred CCcEEEEEECCccccCcHHHHHHHHHcCCeEEEeCC
Confidence 999999999999999999999999999999888764
No 30
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.96 E-value=2.6e-09 Score=93.83 Aligned_cols=100 Identities=15% Similarity=0.053 Sum_probs=81.3
Q ss_pred ccCCCccccccccccccccccc--ccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEc
Q psy4417 166 FVPPEADYVHKIGICGTRYIKQ--YNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHN 243 (440)
Q Consensus 166 ~~~~~~~~~gk~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~ 243 (440)
+...||+++||+++++....+. ...++ ++-...||+.-++ |.+..-+|..+|..+-..|.|.-.|+.+
T Consensus 8 I~vvGPSGAGKDtl~~~ar~~l~~~~r~~-------fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAh 77 (192)
T COG3709 8 IAVVGPSGAGKDTLLDAARARLAGRPRLH-------FVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAH 77 (192)
T ss_pred EEEECCCCCChHHHHHHHHHHhccCCceE-------EEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhc
Confidence 3457999999999987644322 23355 3677788887665 4556669999999999999999999999
Q ss_pred CCccccchhhHHHHHhcCCeEEeecCcchhhhh
Q psy4417 244 GHLYGTHLDSIREVILSGKICVLDCSPVGLFTF 276 (440)
Q Consensus 244 g~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l 276 (440)
|..||++ .+|...++.|..+|.+.+-.-+.++
T Consensus 78 GL~Ygip-~eId~wl~~G~vvl~NgSRa~Lp~a 109 (192)
T COG3709 78 GLSYGIP-AEIDLWLAAGDVVLVNGSRAVLPQA 109 (192)
T ss_pred CccccCc-hhHHHHHhCCCEEEEeccHhhhHHH
Confidence 9999999 7899999999999999887777776
No 31
>KOG1029|consensus
Probab=98.93 E-value=6.8e-10 Score=116.24 Aligned_cols=105 Identities=28% Similarity=0.564 Sum_probs=76.1
Q ss_pred hhcCCCCCCCEEEeECCccC-CCHHHHHHHHHhcCCceeeeeccCCCC---------CCCCCCccccccccccCCCCCCC
Q psy4417 43 DKQGVLKVGDVILGVNGENV-SSPEDLQIEVVKSDGNIQFTIAPQGDD---------ASLPIKPVCYMRCLFTYDPKEDS 112 (440)
Q Consensus 43 ~~~G~L~~GD~Il~VNg~~v-~t~~e~~~~L~~~~~~v~l~v~p~~~~---------~~~~~~~~~~vRal~dy~p~~d~ 112 (440)
+..+ |.+|..|+----.+- +...|++ ..|+...+.++|.... .++.......|-|+|||.+++|+
T Consensus 994 eQLs-la~GqlIlIrkKn~sGWWeGELq----arGkkrq~GWFPa~yVKvL~~~s~raTPa~~~v~qviamYdY~AqndD 1068 (1118)
T KOG1029|consen 994 EQLS-LAPGQLILIRKKNASGWWEGELQ----ARGKKRQIGWFPAEYVKVLEPGSGRATPATRPVCQVIAMYDYEAQNDD 1068 (1118)
T ss_pred hhcc-ccCccEEEEEecCCCccchhhHh----hcCCccccccccHHHhhhccCCCCcCCCCCCccceeEEeeccccCCcc
Confidence 3445 777777663333333 4455533 4566666677766543 11222233567799999999999
Q ss_pred CCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHHh
Q psy4417 113 LLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEER 162 (440)
Q Consensus 113 ~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~r 162 (440)
+|+|.+|||+.|+|+++++||++.+ ++.+||+||||++++
T Consensus 1069 -------ELsF~kgdiI~VlnkdepeWW~Ge~---ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1069 -------ELSFKKGDIINVLNKDEPEWWSGER---NGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred -------cccccCCCEEEecCCCChhhhcccc---cCccccCcccccccc
Confidence 9999999999999999999999988 688999999999764
No 32
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=98.93 E-value=6.5e-10 Score=79.50 Aligned_cols=49 Identities=33% Similarity=0.846 Sum_probs=42.7
Q ss_pred ccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHH
Q psy4417 102 CLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 102 al~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
|+++|.|..++ +|+|++||++.|+.+.+++||.++. ++..|+||+++++
T Consensus 1 Al~~y~~~~~d-------ELs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPD-------ELSFKKGDVITVLEKSDDGWWYGRN---TGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTT-------B-EB-TTEEEEEEEESSTSEEEEEE---TTEEEEEEGGGEE
T ss_pred CCccCCCCCcC-------EeeEcCCCEEEEEEeCCCCEEEEEE---CCEEEEECHHhCC
Confidence 68999999888 9999999999999999999999986 5789999999863
No 33
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=98.90 E-value=1e-09 Score=78.18 Aligned_cols=48 Identities=35% Similarity=0.859 Sum_probs=42.8
Q ss_pred cccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccc
Q psy4417 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156 (440)
Q Consensus 101 Ral~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs 156 (440)
+|+|+|.+..++ +|+|.+||+++|++..+.+||.++..+. +..|+||+
T Consensus 1 ~Alydf~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~-~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPD-------ELSFKKGDIIEVLEKSDDGWWKVRNEST-GKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTT-------BSEB-TTEEEEEEEESSSSEEEEEETTT-TEEEEEEG
T ss_pred CCCeeeCCCCCC-------EEeEECCCEEEEEEecCCCEEEEEECCC-CcEEEeeC
Confidence 589999999887 9999999999999999999999999754 78999996
No 34
>KOG2199|consensus
Probab=98.89 E-value=8.2e-10 Score=108.42 Aligned_cols=59 Identities=34% Similarity=0.741 Sum_probs=53.5
Q ss_pred CccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHHhh
Q psy4417 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEERR 163 (440)
Q Consensus 95 ~~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~rr 163 (440)
.....||||||+.+.++. +|+|++|||++|+|..+++||+++. .++.|++||+++....
T Consensus 213 ~~~rkVRALYDFeAaE~n-------ELsFkaGdIItVLd~s~~~WWKG~~---~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDN-------ELSFKAGDIITVLDDSDPNWWKGEN---HRGIGLFPSNFVTADL 271 (462)
T ss_pred ccchhhhhhhcccccCCC-------ccceecCcEEEEcccCCcchhcccc---CCcccccchhhhhhhh
Confidence 456789999999999998 9999999999999999999999987 4779999999997654
No 35
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=98.79 E-value=2.4e-09 Score=78.45 Aligned_cols=53 Identities=34% Similarity=0.819 Sum_probs=44.9
Q ss_pred cccccccCCCCCCCCCCCccccceeccCCEEEEe-ecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQIL-NQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 99 ~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~-~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
|++|++||.+..+. +|+|++||++.|+ +..+++||.++. ++..|+||++++++
T Consensus 1 ~~~a~~d~~~~~~~-------~Ls~~~Gd~i~v~~~~~~~~ww~~~~---~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 1 YYRAIFDYVAEDPD-------ELSFKKGDVIEVLGEKDDDGWWLGEN---NGRRGWFPSSYVEE 54 (55)
T ss_dssp EEEESSSBESSSTT-------B-EB-TTEEEEEEEEECSTSEEEEEE---TTEEEEEEGGGEEE
T ss_pred CEEEeEEECCCCCC-------ceEEecCCEEEEEEeecCCCEEEEEE---CCcEEEEcHHHEEE
Confidence 57899999997776 8999999999999 888889999998 47789999998754
No 36
>KOG3551|consensus
Probab=98.79 E-value=6.8e-09 Score=101.64 Aligned_cols=80 Identities=19% Similarity=0.364 Sum_probs=71.5
Q ss_pred CeEEEEee-CCCCccEEEEecCC--CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceee
Q psy4417 7 PLKKILGT-GLSPCGLTVEQDAN--GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQF 81 (440)
Q Consensus 7 ~r~v~l~r-~g~~lGiti~~~~~--~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l 81 (440)
.|+|.++| +..+|||+|+||.+ ..|.|+.|.+|-+|++++.|..||.|++|||.++ -||+|+++.|+.+++.|.+
T Consensus 85 ~R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~l 164 (506)
T KOG3551|consen 85 ERRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLL 164 (506)
T ss_pred cceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeee
Confidence 46777776 67899999999876 4599999999999999999999999999999999 7999999999999999988
Q ss_pred eeccC
Q psy4417 82 TIAPQ 86 (440)
Q Consensus 82 ~v~p~ 86 (440)
.|.-.
T Consensus 165 evKy~ 169 (506)
T KOG3551|consen 165 EVKYM 169 (506)
T ss_pred eeeee
Confidence 87643
No 37
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.76 E-value=7.6e-08 Score=75.86 Aligned_cols=75 Identities=25% Similarity=0.430 Sum_probs=64.3
Q ss_pred eEEEEeeC-CCCccEEEEecCC--CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCC--CHHHHHHHHHhcCCceeee
Q psy4417 8 LKKILGTG-LSPCGLTVEQDAN--GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKSDGNIQFT 82 (440)
Q Consensus 8 r~v~l~r~-g~~lGiti~~~~~--~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~--t~~e~~~~L~~~~~~v~l~ 82 (440)
+.+.+.+. ..++|+++.+... .+++|..|.++++|+.+| |+.||+|++|||.++. +++++..+++...+.+++.
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 45677776 6799999987543 569999999999999988 9999999999999995 9999999999877777766
Q ss_pred e
Q psy4417 83 I 83 (440)
Q Consensus 83 v 83 (440)
+
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 5
No 38
>KOG3209|consensus
Probab=98.70 E-value=4.1e-08 Score=102.52 Aligned_cols=84 Identities=31% Similarity=0.438 Sum_probs=72.4
Q ss_pred CCeEEEEeeC-CCCccEEEEecCC-CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceee
Q psy4417 6 HPLKKILGTG-LSPCGLTVEQDAN-GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQF 81 (440)
Q Consensus 6 ~~r~v~l~r~-g~~lGiti~~~~~-~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l 81 (440)
.+--|.+.|+ ++++||.|..-.+ ..--|.+|++||||+++|+|++||.|++|||+++ .+|.+.+++|+.++-+|+|
T Consensus 753 ~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtL 832 (984)
T KOG3209|consen 753 GPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTL 832 (984)
T ss_pred CCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEE
Confidence 3556777765 6799999986544 2234999999999999999999999999999999 8999999999999999999
Q ss_pred eeccCCCC
Q psy4417 82 TIAPQGDD 89 (440)
Q Consensus 82 ~v~p~~~~ 89 (440)
+|+|....
T Consensus 833 tIip~ee~ 840 (984)
T KOG3209|consen 833 TIIPPEEA 840 (984)
T ss_pred EEcChhcc
Confidence 99997654
No 39
>KOG3549|consensus
Probab=98.70 E-value=2.5e-08 Score=96.54 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=72.8
Q ss_pred CCCeEEEEeeCC-CCccEEEEecCC--CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCce
Q psy4417 5 PHPLKKILGTGL-SPCGLTVEQDAN--GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNI 79 (440)
Q Consensus 5 ~~~r~v~l~r~g-~~lGiti~~~~~--~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v 79 (440)
.+.|.|++.|-. ++||++|+||.. -.|+|++|-..-+|+.+|.|-.||.|++|||+.+ .+|+|++.+|+++|+.|
T Consensus 53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeV 132 (505)
T KOG3549|consen 53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEV 132 (505)
T ss_pred CCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEE
Confidence 456789998754 699999999865 4499999999999999999999999999999999 89999999999999999
Q ss_pred eeeecc
Q psy4417 80 QFTIAP 85 (440)
Q Consensus 80 ~l~v~p 85 (440)
+++|..
T Consensus 133 tlTV~~ 138 (505)
T KOG3549|consen 133 TLTVKH 138 (505)
T ss_pred EEEeHh
Confidence 999853
No 40
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.68 E-value=1.1e-07 Score=72.69 Aligned_cols=65 Identities=29% Similarity=0.533 Sum_probs=56.3
Q ss_pred CccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcC-Cceeeee
Q psy4417 18 PCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSD-GNIQFTI 83 (440)
Q Consensus 18 ~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~-~~v~l~v 83 (440)
++|+.+.+..+.+++|..|.+++||+.+| |+.||+|++|||.++ .+++++..+|+... ..+.|++
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 68999988655589999999999999999 999999999999999 45699999999654 6777765
No 41
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.63 E-value=3.5e-07 Score=72.25 Aligned_cols=77 Identities=30% Similarity=0.438 Sum_probs=63.6
Q ss_pred eEEEEeeCCCCccEEEEecCC--CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceeeee
Q psy4417 8 LKKILGTGLSPCGLTVEQDAN--GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQFTI 83 (440)
Q Consensus 8 r~v~l~r~g~~lGiti~~~~~--~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l~v 83 (440)
..+.+.+.+..+|+.+..+.. .+++|..|.++|+|+++| |++||.|++|||..+ .+..+...+++..++.+.+.+
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i 81 (85)
T smart00228 3 RLVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTV 81 (85)
T ss_pred EEEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 356777777899999987544 579999999999999999 999999999999999 466777777777666777776
Q ss_pred cc
Q psy4417 84 AP 85 (440)
Q Consensus 84 ~p 85 (440)
..
T Consensus 82 ~r 83 (85)
T smart00228 82 LR 83 (85)
T ss_pred Ee
Confidence 54
No 42
>KOG3209|consensus
Probab=98.58 E-value=1.7e-07 Score=98.08 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=72.8
Q ss_pred CCCeEEEEeeCCCCccEEEEecCC--CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCcee
Q psy4417 5 PHPLKKILGTGLSPCGLTVEQDAN--GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQ 80 (440)
Q Consensus 5 ~~~r~v~l~r~g~~lGiti~~~~~--~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~ 80 (440)
.+-..|.+.|+..++||+|.||+. .++||-++..+|||.+.|++++||+|++|||.+. .+|+.|..+|++-+..+.
T Consensus 897 ~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vl 976 (984)
T KOG3209|consen 897 GDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVL 976 (984)
T ss_pred CCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEE
Confidence 455679999999999999999865 5599999999999999999999999999999999 899999999998777777
Q ss_pred eeeccC
Q psy4417 81 FTIAPQ 86 (440)
Q Consensus 81 l~v~p~ 86 (440)
+.+.+.
T Consensus 977 l~Lr~g 982 (984)
T KOG3209|consen 977 LLLRRG 982 (984)
T ss_pred EEeccC
Confidence 766553
No 43
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.55 E-value=3.5e-07 Score=72.53 Aligned_cols=68 Identities=32% Similarity=0.570 Sum_probs=57.5
Q ss_pred CccEEEEecCC-CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHH--hcCCceeeeeccC
Q psy4417 18 PCGLTVEQDAN-GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVV--KSDGNIQFTIAPQ 86 (440)
Q Consensus 18 ~lGiti~~~~~-~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~--~~~~~v~l~v~p~ 86 (440)
.||+++..... ++++|..|.++|||+++| |+.||.|++|||..+.+..++...+. ..++.+.|++...
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~ 72 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRD 72 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEET
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 47899887554 579999999999999999 99999999999999999999998886 4578888888764
No 44
>KOG3812|consensus
Probab=98.55 E-value=3.6e-07 Score=88.38 Aligned_cols=67 Identities=24% Similarity=0.465 Sum_probs=61.7
Q ss_pred ccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHHh
Q psy4417 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEER 162 (440)
Q Consensus 96 ~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~r 162 (440)
..|-|+++.+|++..|+-.|.+.-+.+|...|.|||..+...+||.+|.+.+....|+|||.-+.+-
T Consensus 57 VAFAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp~rLen 123 (475)
T KOG3812|consen 57 VAFAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPVRLEN 123 (475)
T ss_pred ceEEEEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccchHHHHH
Confidence 4577899999999999999999999999999999999999999999999988889999999988774
No 45
>KOG3606|consensus
Probab=98.48 E-value=4.5e-07 Score=85.25 Aligned_cols=85 Identities=26% Similarity=0.447 Sum_probs=72.2
Q ss_pred CCCCeEEEEeeCCC--CccEEEEecCC-----------CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHH
Q psy4417 4 PPHPLKKILGTGLS--PCGLTVEQDAN-----------GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDL 68 (440)
Q Consensus 4 ~~~~r~v~l~r~g~--~lGiti~~~~~-----------~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~ 68 (440)
|.--|+|.|.|-|. +|||-|..|.. .+|||+++.|||.|+..|.|.+.|++++|||+.+ +|.+|+
T Consensus 156 PEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV 235 (358)
T KOG3606|consen 156 PETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQV 235 (358)
T ss_pred chhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHH
Confidence 33346788887654 99999987642 4599999999999999999999999999999999 899999
Q ss_pred HHHHHhcCCceeeeeccCCC
Q psy4417 69 QIEVVKSDGNIQFTIAPQGD 88 (440)
Q Consensus 69 ~~~L~~~~~~v~l~v~p~~~ 88 (440)
.+||-.....+.++|.|+..
T Consensus 236 TDMMvANshNLIiTVkPANQ 255 (358)
T KOG3606|consen 236 TDMMVANSHNLIITVKPANQ 255 (358)
T ss_pred HHHHhhcccceEEEeccccc
Confidence 99999888888889988754
No 46
>KOG4792|consensus
Probab=98.48 E-value=5.9e-08 Score=88.88 Aligned_cols=64 Identities=30% Similarity=0.678 Sum_probs=56.6
Q ss_pred CCccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHHhhhcc
Q psy4417 94 IKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEERRKAF 166 (440)
Q Consensus 94 ~~~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~rr~~~ 166 (440)
.....|||++||+.+.... +|.|++||||.|+++....||.||.. .+..|+||-+|+++.+...
T Consensus 121 ~~~~~~vr~~fdF~G~dee-------DLPFkkGeiL~I~~K~eeqWW~Arns--~Gk~GmIPvpYVe~~~~~~ 184 (293)
T KOG4792|consen 121 QEEAEYVRALFDFNGNDEE-------DLPFKKGEILRIRDKPEEQWWNARNS--EGKRGMIPVPYVEKYRPAS 184 (293)
T ss_pred hhhhhheeeeeccCCCccc-------cCCcccCcEEEEecCcHHHhhhhhcc--CCcccceechHHHhhhhhh
Confidence 3456899999999998776 99999999999999999999999864 4789999999999987765
No 47
>KOG1118|consensus
Probab=98.47 E-value=7.7e-08 Score=91.84 Aligned_cols=58 Identities=28% Similarity=0.629 Sum_probs=52.0
Q ss_pred CCCccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHH
Q psy4417 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 93 ~~~~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
+..+..++||+||++|.++. +|.|++||++.|+++.|.+||.+++. +..|++|.+|..
T Consensus 302 s~~~~p~cralYdFepenEg-------EL~fkeGDlI~l~~QIdenWyeG~~~---g~sG~FPvnYv~ 359 (366)
T KOG1118|consen 302 SQMDQPCCRALYDFEPENEG-------ELDFKEGDLITLTNQIDENWYEGEKH---GESGMFPVNYVE 359 (366)
T ss_pred CcccchhheeeeccCCCCCC-------ccCcccCceeeehhhcCcchhhheec---CccCccccceeE
Confidence 34567789999999999877 99999999999999999999999995 569999999974
No 48
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.39 E-value=2.7e-07 Score=66.23 Aligned_cols=52 Identities=37% Similarity=0.887 Sum_probs=45.3
Q ss_pred ccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHH
Q psy4417 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 100 vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
++++++|.+..+. +|+|.+||++.|+...+.+||.++..+. ..|+||..++.
T Consensus 2 ~~a~~~~~~~~~~-------~l~~~~Gd~v~v~~~~~~~w~~~~~~~~--~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPD-------ELSFKKGDIIEVLEKSDDGWWEGRLLGG--KRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCC-------CCCCCCCCEEEEEEcCCCCeEEEEECCC--CEEEEccccCc
Confidence 5789999998876 9999999999999988899999998642 89999998764
No 49
>KOG2070|consensus
Probab=98.39 E-value=2.6e-07 Score=93.21 Aligned_cols=58 Identities=24% Similarity=0.618 Sum_probs=53.2
Q ss_pred CCccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 94 IKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 94 ~~~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
...+.-|||-|++..++.+ +|+|.||||++|+...+++||.+.. ++..||+||+|+.+
T Consensus 14 s~~pLvvrAkf~F~gsNnD-------ELsf~KgDvItVTq~eeGGWWEGTl---ng~TGWFPsnYV~e 71 (661)
T KOG2070|consen 14 SNNPLVVRAKFNFQGSNND-------ELSFSKGDVITVTQVEEGGWWEGTL---NGRTGWFPSNYVRE 71 (661)
T ss_pred CCCceEEEEEeecccCCCc-------eeccccCCEEEEEEeccCcceeccc---cCccCccchHHHHH
Confidence 3456889999999999888 9999999999999999999999988 67899999999987
No 50
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.39 E-value=3.5e-07 Score=66.53 Aligned_cols=54 Identities=35% Similarity=0.788 Sum_probs=46.9
Q ss_pred ccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHH
Q psy4417 98 CYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 98 ~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
.+++++++|.+.... +|+|.+||++.|++..+.+||.++..+ +..|+||.+++.
T Consensus 3 ~~~~a~~~~~~~~~~-------~l~~~~Gd~v~v~~~~~~~w~~~~~~~--~~~G~vP~~~v~ 56 (58)
T smart00326 3 PQVRALYDYTAQDPD-------ELSFKKGDIITVLEKSDDGWWKGRLGR--GKEGLFPSNYVE 56 (58)
T ss_pred cEEEEeeeeCCCCCC-------CCCCCCCCEEEEEEcCCCCeEEEEeCC--CCEEEEchHHEE
Confidence 467899999997665 999999999999998899999998854 789999998864
No 51
>KOG0708|consensus
Probab=98.34 E-value=8.4e-07 Score=87.76 Aligned_cols=106 Identities=29% Similarity=0.396 Sum_probs=75.4
Q ss_pred EEEEcCCccccchhhHHHHHhc-CCeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhh
Q psy4417 239 YGEHNGHLYGTHLDSIREVILS-GKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELE 317 (440)
Q Consensus 239 ~~~~~g~~yg~~~~~i~~v~~~-g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e 317 (440)
..+......-.+.+.|+...-. -++||+ ++|.- ..|+..|+.... .+|. -+.|+|+|+.
T Consensus 164 ~~~~~~e~~~lsY~~V~~~~~~~~RPVli-lg~~~-d~l~~~Lv~e~~-~kF~-------------~C~~~t~~~~---- 223 (359)
T KOG0708|consen 164 ENELGKELSLLSYELVERLDSNYLRPVLI-LGPLL-DRLLDNLVNEFP-DKFK-------------SCLPETLRPS---- 223 (359)
T ss_pred ccccccccccccchhhhhhhccccCceEe-ccchH-HHHHHHHHHhhh-cccc-------------ccchhhhccc----
Confidence 3344445555677777776544 345555 44432 226666664421 2221 4678887766
Q ss_pred ccCccccccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEecCCC
Q psy4417 318 ENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSP 374 (440)
Q Consensus 318 ~~g~~y~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~~ 374 (440)
+++|++.++.+.||+++++++++|||+..+|+++..+|++|+|++..
T Consensus 224 ----------~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~ 270 (359)
T KOG0708|consen 224 ----------REEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGG 270 (359)
T ss_pred ----------HHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCc
Confidence 57899999999999999999999999999999999999999998743
No 52
>KOG1892|consensus
Probab=98.31 E-value=1.6e-06 Score=93.28 Aligned_cols=81 Identities=21% Similarity=0.389 Sum_probs=71.8
Q ss_pred CCCeEEEEeeCCCCccEEEEecCC-----CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCC
Q psy4417 5 PHPLKKILGTGLSPCGLTVEQDAN-----GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDG 77 (440)
Q Consensus 5 ~~~r~v~l~r~g~~lGiti~~~~~-----~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~ 77 (440)
++..+|+|+|+ .++|++|+..++ -+|||..|.+||+|+-.|+|..||+++.|||.++ .+.+.++.+|-..+.
T Consensus 932 pei~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~ 1010 (1629)
T KOG1892|consen 932 PEIITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGN 1010 (1629)
T ss_pred CceEEEEEecc-CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCC
Confidence 66788999888 889999986443 3499999999999999999999999999999999 789999999999999
Q ss_pred ceeeeeccC
Q psy4417 78 NIQFTIAPQ 86 (440)
Q Consensus 78 ~v~l~v~p~ 86 (440)
.|+|.|..+
T Consensus 1011 vV~leVaKq 1019 (1629)
T KOG1892|consen 1011 VVHLEVAKQ 1019 (1629)
T ss_pred eEEEehhhh
Confidence 999998754
No 53
>KOG4226|consensus
Probab=98.22 E-value=3e-07 Score=86.43 Aligned_cols=54 Identities=31% Similarity=0.784 Sum_probs=48.5
Q ss_pred cccccccCCCCCCCCCCCccccceeccCCEEEEee--cCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILN--QKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 99 ~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~--~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
-|-|||.++..+|. +|+|.+||.|.|++ ..|++||.||.. .+++||+|.||++.
T Consensus 193 vVvaLYsFsssnde-------ELsFeKGerleivd~Pe~DPdWwkarn~--~G~vGLVPrNYv~v 248 (379)
T KOG4226|consen 193 VVVALYSFSSSNDE-------ELSFEKGERLEIVDKPENDPDWWKARNA--RGQVGLVPRNYVVV 248 (379)
T ss_pred EEEEEecccCCChh-------hcccccCceeEeccCCCCCchHHhhccc--CCccceeecceEEE
Confidence 46799999999988 99999999999999 579999999975 58999999999865
No 54
>KOG3651|consensus
Probab=98.18 E-value=5.8e-06 Score=79.02 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=66.7
Q ss_pred eEEEEeeCCCCc-cEEEEecCC-Cc-EEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceeee
Q psy4417 8 LKKILGTGLSPC-GLTVEQDAN-GN-LIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQFT 82 (440)
Q Consensus 8 r~v~l~r~g~~l-Giti~~~~~-~~-i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l~ 82 (440)
-.|.+.|+..+| ||+|-||.. .+ +||.+|..++||.+.|+++.||+|+.|||+++ .+.-+++++++-+.++|++.
T Consensus 6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ih 85 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIH 85 (429)
T ss_pred CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEE
Confidence 368888887654 999987644 33 89999999999999999999999999999999 78899999999998998887
Q ss_pred ec
Q psy4417 83 IA 84 (440)
Q Consensus 83 v~ 84 (440)
+-
T Consensus 86 yN 87 (429)
T KOG3651|consen 86 YN 87 (429)
T ss_pred eh
Confidence 64
No 55
>KOG3553|consensus
Probab=98.18 E-value=2.6e-06 Score=68.42 Aligned_cols=64 Identities=20% Similarity=0.384 Sum_probs=52.8
Q ss_pred CccEEEEecCC------------CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceeeee
Q psy4417 18 PCGLTVEQDAN------------GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQFTI 83 (440)
Q Consensus 18 ~lGiti~~~~~------------~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l~v 83 (440)
.+||.|-||-+ .+|||.+|.+||||+.+| |+.+|.|+++||-+. .||+++++.|+. +..+.+.|
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLV 113 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLV 113 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHH
Confidence 46999987643 459999999999999999 999999999999887 899999998876 33344444
No 56
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.17 E-value=8.9e-06 Score=74.75 Aligned_cols=138 Identities=22% Similarity=0.149 Sum_probs=94.7
Q ss_pred eEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCceee
Q psy4417 263 ICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLE 342 (440)
Q Consensus 263 ~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle 342 (440)
++|+..+.+|..+|++.|... ..+.++ +....+||+.+.. +.+|+|++.++|.++++.+.|.|
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~-----~~~~~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 67 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQR-----EQTQLL---------VAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFAL 67 (186)
T ss_pred EEEECCCCCCHHHHHHHHhcc-----CCCeEE---------EcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhh
Confidence 345555555566776666322 223333 6667788876543 56899999999999999999987
Q ss_pred EEEEcCccccccHHHHHHHHhcCCeeEe---------------------cCCCcHHHHHHHHHHH---------HHHHH-
Q psy4417 343 YGEHNGHLYGTHLDSIREVILSGKICVL---------------------DCSPVEEDIKRTLEES---------ACLQR- 391 (440)
Q Consensus 343 ~~~~~~~~yGt~~~~i~~~~~~~~~~i~---------------------~~~~s~e~l~~~l~~~---------~~~e~- 391 (440)
+..++|++|||+. .++..++.|+.+++ .+..+.+.+.+|+... .+++.
T Consensus 68 ~~~~~g~~yg~~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~ 146 (186)
T PRK10078 68 SWHANGLYYGVGI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARA 146 (186)
T ss_pred HHHHhCCccCCcH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 7799999999999 59999988876432 2356789999999532 12222
Q ss_pred HhcCCccEEEEcCCHHHHHHHHHHHHHhc
Q psy4417 392 SYERFIDKVIVNEDFDETFRTVIELLDTL 420 (440)
Q Consensus 392 ~~~~~fd~vi~Nddl~~a~~~l~~~i~~~ 420 (440)
.+...+|++++|++. ..+++.+-|...
T Consensus 147 ~~~~~ad~~vi~~~~--s~ee~~~~i~~~ 173 (186)
T PRK10078 147 ARYQPQDCHTLNNDG--SLRQSVDTLLTL 173 (186)
T ss_pred hhhccCCEEEEeCCC--CHHHHHHHHHHH
Confidence 234567889999774 456666666543
No 57
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.15 E-value=8.8e-06 Score=64.56 Aligned_cols=67 Identities=31% Similarity=0.564 Sum_probs=54.9
Q ss_pred CccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCC--HHHHHHHHHh-cCCceeeeeccC
Q psy4417 18 PCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS--PEDLQIEVVK-SDGNIQFTIAPQ 86 (440)
Q Consensus 18 ~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t--~~e~~~~L~~-~~~~v~l~v~p~ 86 (440)
+||+.+..+ ..+++|..|.+++||+++| |+.||+|++|||..+.+ +.++...++. .+..+.+.+...
T Consensus 3 ~lG~~~~~~-~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 3 GIGLELKYD-DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEEEEc-CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 588888753 4669999999999999999 99999999999999944 4888888874 456677777643
No 58
>KOG3571|consensus
Probab=98.11 E-value=9.3e-06 Score=82.51 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=69.5
Q ss_pred CCCCeEEEEeeCCCC-ccEEEEecC----CCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHh--
Q psy4417 4 PPHPLKKILGTGLSP-CGLTVEQDA----NGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVK-- 74 (440)
Q Consensus 4 ~~~~r~v~l~r~g~~-lGiti~~~~----~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~-- 74 (440)
..+..+|.|-=..-+ |||+|.|.. +++|||+.|++||+.+..|++.+||.||+||.++. .+-+||+..|+.
T Consensus 247 slnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV 326 (626)
T KOG3571|consen 247 SLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV 326 (626)
T ss_pred ceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence 355566666555555 899999843 37799999999999999999999999999999999 788999999984
Q ss_pred -cCCceeeeeccCCC
Q psy4417 75 -SDGNIQFTIAPQGD 88 (440)
Q Consensus 75 -~~~~v~l~v~p~~~ 88 (440)
..++++|+|.-..+
T Consensus 327 ~~~gPi~ltvAk~~D 341 (626)
T KOG3571|consen 327 SRPGPIKLTVAKCWD 341 (626)
T ss_pred ccCCCeEEEEeeccC
Confidence 46778888875544
No 59
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.08 E-value=8.3e-05 Score=67.62 Aligned_cols=94 Identities=23% Similarity=0.200 Sum_probs=72.5
Q ss_pred eEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCceee
Q psy4417 263 ICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLE 342 (440)
Q Consensus 263 ~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle 342 (440)
++|+..+.+|..+|++.|..... ..+... |+.++|||+.+ .+|.+|+|++.++|..++..+.|.+
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~~~---~~~~~~---------~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 68 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLA---GDPRVH---------FVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFAL 68 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---cCCcEE---------EeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEE
Confidence 45666666677778776653321 123344 78899988754 5689999999999999999999999
Q ss_pred EEEEcCccccccHHHHHHHHhcCCeeEecC
Q psy4417 343 YGEHNGHLYGTHLDSIREVILSGKICVLDC 372 (440)
Q Consensus 343 ~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~ 372 (440)
+.++.+++||++. .+...+++|..++++.
T Consensus 69 ~~~~~~~~~g~~~-~i~~~~~~g~~vv~~g 97 (179)
T TIGR02322 69 SWQAHGLSYGIPA-EIDQWLEAGDVVVVNG 97 (179)
T ss_pred EEeecCccccChH-HHHHHHhcCCEEEEEC
Confidence 9999999999997 5888888888777654
No 60
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.05 E-value=1.6e-05 Score=62.64 Aligned_cols=56 Identities=27% Similarity=0.485 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhc--CCceeeeecc
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS--DGNIQFTIAP 85 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~--~~~v~l~v~p 85 (440)
.+++|..|.++|||+.+| |+.||.|++|||..+.+.+++...|... ++.+.+.+..
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r 67 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLP 67 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEE
Confidence 468999999999999999 9999999999999999899999888853 5667777764
No 61
>KOG3580|consensus
Probab=98.03 E-value=1.5e-05 Score=82.32 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=66.9
Q ss_pred eEEEEeeCC-CCccEEEEecCC------C--cEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcC
Q psy4417 8 LKKILGTGL-SPCGLTVEQDAN------G--NLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSD 76 (440)
Q Consensus 8 r~v~l~r~g-~~lGiti~~~~~------~--~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~ 76 (440)
-+|+|.|+. -++||.|.||.+ | .|+|+.|.|||||+ |+|+.||.|+.|||+++ ..|.-+++.|+.++
T Consensus 10 hTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrksg 87 (1027)
T KOG3580|consen 10 HTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSG 87 (1027)
T ss_pred heeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHhhc
Confidence 368888864 599999999875 1 28999999999997 78999999999999999 67888889999999
Q ss_pred CceeeeeccCCC
Q psy4417 77 GNIQFTIAPQGD 88 (440)
Q Consensus 77 ~~v~l~v~p~~~ 88 (440)
+...++|.....
T Consensus 88 K~A~ItvkRprk 99 (1027)
T KOG3580|consen 88 KVAAITVKRPRK 99 (1027)
T ss_pred cceeEEecccce
Confidence 888888865443
No 62
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.99 E-value=2.2e-05 Score=61.50 Aligned_cols=64 Identities=28% Similarity=0.385 Sum_probs=48.3
Q ss_pred ccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhcCCceeeeecc
Q psy4417 19 CGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAP 85 (440)
Q Consensus 19 lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~~~~v~l~v~p 85 (440)
+|+.+.. .++++.|..|.++|+|+.+| |++||.|++|||..+.+..++...+ ..+..+.+.+..
T Consensus 3 ~G~~~~~-~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~~~~l~~~-~~~~~v~l~v~r 66 (80)
T cd00990 3 LGLTLDK-EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDALQDRLKEY-QAGDPVELTVFR 66 (80)
T ss_pred ccEEEEc-cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHHHHHHHhc-CCCCEEEEEEEE
Confidence 6787754 34669999999999999999 9999999999999996544433222 235566776654
No 63
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.98 E-value=2.6e-05 Score=60.85 Aligned_cols=56 Identities=34% Similarity=0.491 Sum_probs=48.4
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhc-CCceeeeecc
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS-DGNIQFTIAP 85 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~-~~~v~l~v~p 85 (440)
..++|..|.++|+|+.+| |+.||.|++|||.++.+.+++...|... +..+.+.+.+
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~l~~~~~~~~~l~v~r 68 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWEDLVDAVQENPGKPLTLTVER 68 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHHCCCceEEEEEEE
Confidence 348899999999999999 9999999999999998889999888765 5567777754
No 64
>KOG3605|consensus
Probab=97.95 E-value=1e-05 Score=84.37 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=65.4
Q ss_pred EEEeeCCCCccEEEEecCCCc----EEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcC--Cceee
Q psy4417 10 KILGTGLSPCGLTVEQDANGN----LIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSD--GNIQF 81 (440)
Q Consensus 10 v~l~r~g~~lGiti~~~~~~~----i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~--~~v~l 81 (440)
+.-++.|+.||+.|+.-..|. ++|+..+++|||+++|.|..||+|..|||.++ +...-.+.++++.. -.|+|
T Consensus 650 vv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~Vkl 729 (829)
T KOG3605|consen 650 VLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKL 729 (829)
T ss_pred eeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEE
Confidence 344468999999998743333 68999999999999999999999999999999 78899999999764 44788
Q ss_pred eeccCCC
Q psy4417 82 TIAPQGD 88 (440)
Q Consensus 82 ~v~p~~~ 88 (440)
.|++.+.
T Consensus 730 tiV~cpP 736 (829)
T KOG3605|consen 730 NIVSCPP 736 (829)
T ss_pred EEecCCC
Confidence 8887653
No 65
>KOG0162|consensus
Probab=97.87 E-value=1.1e-05 Score=84.99 Aligned_cols=53 Identities=30% Similarity=0.733 Sum_probs=47.1
Q ss_pred cccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 99 ~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
-++|+|+|.++..+ +|+|++|||+.|+..+-.+||+++. ++..||+|.+|+.+
T Consensus 1053 ~~~A~Y~y~gq~~d-------Els~~~~diIei~~edpSGWw~gk~---~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1053 VCEALYDYPGQDVD-------ELSFKKGDIIEIMREDPSGWWLGKL---NGKEGLFPGNYVTE 1105 (1106)
T ss_pred ceeeeccCCCCCcc-------cccccCCCEEEEeccCCCcchhhcc---CCcccccccccccc
Confidence 46799999998666 9999999999999999999999985 67899999998753
No 66
>KOG4226|consensus
Probab=97.85 E-value=1.4e-05 Score=75.36 Aligned_cols=50 Identities=22% Similarity=0.640 Sum_probs=44.9
Q ss_pred cccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHHh
Q psy4417 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEER 162 (440)
Q Consensus 103 l~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~r 162 (440)
-|.|.+...+ +|++.+|+.+.|++++.++||.+.. +++.|++||||+.|-
T Consensus 113 Kf~Y~a~~eD-------ELsLtKGtrv~vmEKssDGWWrG~~---ng~VGWFPSNYv~E~ 162 (379)
T KOG4226|consen 113 KFNYVAERED-------ELSLTKGTRVTVMEKSSDGWWRGSY---NGQVGWFPSNYVTEE 162 (379)
T ss_pred EEeecccccc-------ccccccCcEEEEEEeccCcceeccc---CCeeccccccceehh
Confidence 4788887766 9999999999999999999999987 689999999999874
No 67
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.85 E-value=5.4e-05 Score=60.49 Aligned_cols=56 Identities=36% Similarity=0.528 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhc--CCceeeeecc
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS--DGNIQFTIAP 85 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~--~~~v~l~v~p 85 (440)
++++|..|.++++|+++| |+.||.|++|||..+.+..++..++... +..+.+.+..
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r 81 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLR 81 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 468999999999999999 9999999999999998888888888754 6677777754
No 68
>KOG3938|consensus
Probab=97.79 E-value=3.3e-05 Score=72.71 Aligned_cols=82 Identities=22% Similarity=0.320 Sum_probs=71.5
Q ss_pred CCCCeEEEEeeCCCCccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhc--CCce
Q psy4417 4 PPHPLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKS--DGNI 79 (440)
Q Consensus 4 ~~~~r~v~l~r~g~~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~--~~~v 79 (440)
-+++..|.+.|..+.||+||..+.-|..||.+|.+||.-++--.+++||.|-+|||.++ +-|.|++.+|+.. +...
T Consensus 124 kGq~kEv~v~KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~f 203 (334)
T KOG3938|consen 124 KGQAKEVEVVKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETF 203 (334)
T ss_pred cCcceeEEEEecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCee
Confidence 35677899999999999999986557799999999999999988999999999999999 7899999999965 5666
Q ss_pred eeeecc
Q psy4417 80 QFTIAP 85 (440)
Q Consensus 80 ~l~v~p 85 (440)
++.++.
T Consensus 204 tlrLie 209 (334)
T KOG3938|consen 204 TLRLIE 209 (334)
T ss_pred EEEeec
Confidence 666653
No 69
>KOG4225|consensus
Probab=97.77 E-value=2.5e-05 Score=78.31 Aligned_cols=56 Identities=25% Similarity=0.631 Sum_probs=49.8
Q ss_pred CccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEE--EecCCCCCCccccchhHH
Q psy4417 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQA--QLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 95 ~~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a--~~~~~~~~~G~iPs~~~~ 160 (440)
+..+.+||+|.|.|++++ +|-|+.|||++|+.+.|++|..+ ++ .+..|++|.||+.
T Consensus 430 ~~~l~yrAly~Y~pqned-------eLEl~egDii~VmeKcddgWfvGts~r---tg~fGtFPgnyV~ 487 (489)
T KOG4225|consen 430 SEPLKYRALYSYRPQNED-------ELELREGDIIDVMEKCDDGWFVGTSRR---TGKFGTFPGNYVK 487 (489)
T ss_pred CCcccceeccccCCCCch-------hheeccCCEEeeeecccCcceecccee---cccccccCccccc
Confidence 345668999999999988 99999999999999999999988 55 4789999999975
No 70
>KOG3601|consensus
Probab=97.76 E-value=9.4e-06 Score=74.15 Aligned_cols=58 Identities=28% Similarity=0.709 Sum_probs=51.6
Q ss_pred CCCccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHH
Q psy4417 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 93 ~~~~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
+.....|+.++|++.|..+. +|.|++||+.+|++..++.||.++.. +..|++|.++..
T Consensus 159 ~~~~~~yqQa~~df~~~pp~-------ql~f~~gq~~~v~~~ss~~ww~Gs~l---g~agiFpagyv~ 216 (222)
T KOG3601|consen 159 PAPTNYYQQALYDFQPQPPG-------QLAFRRGQQIQVLDSSSPFWWFGSKL---GRAGIFPAGYVA 216 (222)
T ss_pred CCccchhhhhcCCCCCCCch-------hhccccCCcceeecCCCcchhhcccc---CceeeecCcccc
Confidence 34577899999999998887 99999999999999999999999985 679999998864
No 71
>KOG4225|consensus
Probab=97.73 E-value=2e-05 Score=78.89 Aligned_cols=54 Identities=33% Similarity=0.694 Sum_probs=49.5
Q ss_pred ccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 98 CYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 98 ~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
.-.||+|+|.|+... +|+|.+|||+.|+.+.|.+|..+.+ ++..|++|.+|++-
T Consensus 231 ~~aralf~F~~qt~k-------EL~~~kGDIVyI~rkvD~nWyeGEh---hGr~GifP~sYvE~ 284 (489)
T KOG4225|consen 231 RAARALFDFEAQTPK-------ELPFNKGDIVYILRKVDQNWYEGEH---HGRVGIFPASYVEI 284 (489)
T ss_pred chhhheeccccCCcc-------ccccCCCCEEEEEeeccCceeeeee---cceecceechheee
Confidence 347899999999877 9999999999999999999999998 68899999999974
No 72
>KOG4348|consensus
Probab=97.70 E-value=3e-05 Score=77.49 Aligned_cols=56 Identities=34% Similarity=0.758 Sum_probs=50.2
Q ss_pred ccccccccccCCCCCCCCCCCccccceeccCCEEEEee--cCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILN--QKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 96 ~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~--~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
..-|.|.+|-|+|++|+ +|+|+.|||++.++ .+|-+||.+.+ ++..|++|-|++..
T Consensus 260 tKeycrv~F~Ye~qndD-------ELt~KEgdil~lItK~cgdaGWweGEL---nGk~GvFPDNFv~l 317 (627)
T KOG4348|consen 260 TKEYCRVKFVYEPQNDD-------ELTLKEGDILILITKNCGDAGWWEGEL---NGKKGVFPDNFVEL 317 (627)
T ss_pred hhhheeeeeeecCCCcc-------ceeeccccEEEEecccccccceeeeee---cCccccCCchhhhh
Confidence 45689999999999999 99999999999988 46999999998 67899999998865
No 73
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.68 E-value=0.00015 Score=56.80 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHh--cCCceeeeecc
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK--SDGNIQFTIAP 85 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~--~~~~v~l~v~p 85 (440)
.+++|..|.++|||+. | |+.||.|++|||..+.+.+++..+|.. .+..+.+.+..
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r 64 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKR 64 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 3588999999999986 8 999999999999999888999988874 35667777754
No 74
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.68 E-value=5.4e-06 Score=82.15 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=73.8
Q ss_pred hcccCCCccccccccccccccccccccccccccc-CcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEE
Q psy4417 164 KAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTL-MSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEH 242 (440)
Q Consensus 164 ~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~ 242 (440)
..+++.||+++||+++...+.+.....+...+.+ .-..+++||++|+++|.+|.+|||++..++.+....+.|++++
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a-- 82 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA-- 82 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH--
Confidence 3567789999999998776654322211100000 0157899999999999999999999999999888888888765
Q ss_pred cCCccccchhhHHHHHhcCCeEEeecCcchh
Q psy4417 243 NGHLYGTHLDSIREVILSGKICVLDCSPVGL 273 (440)
Q Consensus 243 ~g~~yg~~~~~i~~v~~~g~~~il~~~~~g~ 273 (440)
.+.|++++++|+++||. +..|.
T Consensus 83 --------~~~i~~i~~~gk~pIlv-GGt~~ 104 (307)
T PRK00091 83 --------LAAIADILARGKLPILV-GGTGL 104 (307)
T ss_pred --------HHHHHHHHhCCCCEEEE-CcHHH
Confidence 68899999999999885 44443
No 75
>KOG3552|consensus
Probab=97.61 E-value=7e-05 Score=80.96 Aligned_cols=75 Identities=25% Similarity=0.335 Sum_probs=63.8
Q ss_pred CCeEEEEeeCCCCccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceeeee
Q psy4417 6 HPLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQFTI 83 (440)
Q Consensus 6 ~~r~v~l~r~g~~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l~v 83 (440)
+||.|.+.|+. .|||-++.| ..++|..|.+|||++ |+|.+||+|+.|||.++ ...+-+.++++.+...+.|+|
T Consensus 55 ~pr~vq~~r~~-~lGFgfvag--rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV 129 (1298)
T KOG3552|consen 55 EPRQVQLQRNA-SLGFGFVAG--RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTV 129 (1298)
T ss_pred cchhhhhhccc-cccceeecC--CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEE
Confidence 47778887764 477777764 579999999999986 78999999999999999 678999999999999998887
Q ss_pred cc
Q psy4417 84 AP 85 (440)
Q Consensus 84 ~p 85 (440)
..
T Consensus 130 ~q 131 (1298)
T KOG3552|consen 130 CQ 131 (1298)
T ss_pred ec
Confidence 54
No 76
>KOG2856|consensus
Probab=97.58 E-value=2e-05 Score=77.13 Aligned_cols=56 Identities=30% Similarity=0.617 Sum_probs=47.7
Q ss_pred cccccccccCCCCCCCCCCCccccceeccCCEEEEeec-CCCCceEEEecCCCCCCccccchhHHH
Q psy4417 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ-KDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 97 ~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~-~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
...|||||||.+++.+ +|+|+.||.|.++.. +..+|+++|.. +|..||.|.+|++.
T Consensus 414 ~v~vraLYDY~gqE~D-------ElsfkaGd~l~kl~eeDeqGWC~Grl~--~G~vGLyPAnYVe~ 470 (472)
T KOG2856|consen 414 FVRVRALYDYAGQEGD-------ELSFKAGDELEKLEEEDEQGWCKGRLD--SGRVGLYPANYVEC 470 (472)
T ss_pred eeeEEeeeccCccccc-------chhhccccHhhhcCCcccccccccccc--CCcccccchhhhhc
Confidence 3678999999999888 999999999999874 46678888873 37899999999864
No 77
>KOG3605|consensus
Probab=97.51 E-value=9.7e-05 Score=77.31 Aligned_cols=77 Identities=23% Similarity=0.453 Sum_probs=67.2
Q ss_pred CCCCeEEEEeeCCC--CccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCce
Q psy4417 4 PPHPLKKILGTGLS--PCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNI 79 (440)
Q Consensus 4 ~~~~r~v~l~r~g~--~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v 79 (440)
++-...|.++|+.. .|||++..| +|..++.||.|+|-| +++|..|++|||++| ..|+..+.+|.++-+++
T Consensus 734 cpPV~~V~I~RPd~kyQLGFSVQNG-----iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEI 807 (829)
T KOG3605|consen 734 CPPVTTVLIRRPDLRYQLGFSVQNG-----IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEI 807 (829)
T ss_pred CCCceEEEeecccchhhccceeeCc-----EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhhhh
Confidence 34555788888764 889999886 899999999999999 999999999999999 78999999999999998
Q ss_pred eeeeccC
Q psy4417 80 QFTIAPQ 86 (440)
Q Consensus 80 ~l~v~p~ 86 (440)
.++-.|.
T Consensus 808 hMKTMPa 814 (829)
T KOG3605|consen 808 HMKTMPA 814 (829)
T ss_pred hhhcchH
Confidence 8887664
No 78
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.00023 Score=73.32 Aligned_cols=70 Identities=23% Similarity=0.399 Sum_probs=60.6
Q ss_pred CCCccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhc-CCceeeeeccC
Q psy4417 16 LSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKS-DGNIQFTIAPQ 86 (440)
Q Consensus 16 g~~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~-~~~v~l~v~p~ 86 (440)
-.++|+.+.....+.+.|..+.+++||+++| |++||.|+.|||.++ .+.+++.+.|+.. |..++|++.+.
T Consensus 99 ~~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 99 FGGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred ccceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 4578899987544789999999999999999 999999999999999 6678899988855 66789999886
No 79
>PRK10139 serine endoprotease; Provisional
Probab=97.46 E-value=0.00065 Score=71.16 Aligned_cols=56 Identities=27% Similarity=0.424 Sum_probs=50.0
Q ss_pred cEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhcCCceeeeeccC
Q psy4417 30 NLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQ 86 (440)
Q Consensus 30 ~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~~~~v~l~v~p~ 86 (440)
+++|..|.++|||+++| |+.||.|++|||.++.+.+++..+++...+.+.|.+...
T Consensus 391 Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~v~l~v~R~ 446 (455)
T PRK10139 391 GIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRG 446 (455)
T ss_pred ceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 47899999999999999 999999999999999999999999987667777777653
No 80
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.45 E-value=0.00032 Score=70.56 Aligned_cols=68 Identities=28% Similarity=0.479 Sum_probs=55.0
Q ss_pred CCccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCC--CHHHHHHHHHh-cCCceeeeeccC
Q psy4417 17 SPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVK-SDGNIQFTIAPQ 86 (440)
Q Consensus 17 ~~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~--t~~e~~~~L~~-~~~~v~l~v~p~ 86 (440)
.++|+.+... .+.++|..|.++|||+++| |+.||+|++|||.++. +..++...+.. .+..+.+++...
T Consensus 51 ~~lG~~~~~~-~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 121 (334)
T TIGR00225 51 EGIGIQVGMD-DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRA 121 (334)
T ss_pred EEEEEEEEEE-CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeC
Confidence 3578888653 4679999999999999999 9999999999999994 45677777764 466788888754
No 81
>KOG3542|consensus
Probab=97.45 E-value=0.00014 Score=76.41 Aligned_cols=69 Identities=28% Similarity=0.416 Sum_probs=60.0
Q ss_pred CCCeEEEEee--CCCCccEEEEecCCC--cEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHh
Q psy4417 5 PHPLKKILGT--GLSPCGLTVEQDANG--NLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVK 74 (440)
Q Consensus 5 ~~~r~v~l~r--~g~~lGiti~~~~~~--~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~ 74 (440)
..+|.|++.| ...+|-+.+.||... +|||..|.||+.|.++| |+.||+|++|||++. .+...+..+|++
T Consensus 534 AK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrn 608 (1283)
T KOG3542|consen 534 AKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRN 608 (1283)
T ss_pred ccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcC
Confidence 4678899987 356999999998663 49999999999999999 999999999999999 677888888875
No 82
>KOG4348|consensus
Probab=97.44 E-value=2.5e-05 Score=78.01 Aligned_cols=53 Identities=30% Similarity=0.791 Sum_probs=48.0
Q ss_pred cccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 99 ~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
...+.|.|.|++|+ +|.|+.|||+.|+..-..+||.+.+ ++..|++|||++.+
T Consensus 102 ~c~v~f~Y~pqndD-------ELelkVGDiIeli~eVEeGWw~G~L---ngk~GmFPsNFVke 154 (627)
T KOG4348|consen 102 ICVVTFAYSPQNDD-------ELELKVGDIIELISEVEEGWWKGKL---NGKVGMFPSNFVKE 154 (627)
T ss_pred eEEEEEeecCCCCc-------eeeeeeccHHHhhhHhhhhhhhcee---cCcccccchhhcee
Confidence 34578999999999 9999999999999988999999988 58899999999976
No 83
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.43 E-value=0.00041 Score=71.28 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=54.4
Q ss_pred CCccEEEEecCC-----CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHh-cCCceeeeecc
Q psy4417 17 SPCGLTVEQDAN-----GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVK-SDGNIQFTIAP 85 (440)
Q Consensus 17 ~~lGiti~~~~~-----~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~-~~~~v~l~v~p 85 (440)
.++|+.+..... .+++|..|.++|||+++| |+.||+|++|||.++ .+..++..+|+. .+..+.|++..
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r 160 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRR 160 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEE
Confidence 367888764322 268999999999999999 999999999999999 456778888874 46678888865
No 84
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.32 E-value=0.0011 Score=69.15 Aligned_cols=57 Identities=30% Similarity=0.517 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHh--cCCceeeeeccC
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK--SDGNIQFTIAPQ 86 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~--~~~~v~l~v~p~ 86 (440)
.+++|..|.++|+|+++| |+.||.|++|||.++.+.+++.++|+. .++.+.|.+...
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~~d~~~~l~~~~~g~~v~l~v~R~ 420 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSVAELRKVLDRAKKGGRVALLILRG 420 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 458999999999999999 999999999999999999999999985 367788887653
No 85
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.28 E-value=0.0014 Score=68.77 Aligned_cols=54 Identities=22% Similarity=0.352 Sum_probs=47.7
Q ss_pred EEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHh-cCCceeeeecc
Q psy4417 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK-SDGNIQFTIAP 85 (440)
Q Consensus 31 i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~-~~~~v~l~v~p 85 (440)
+.|..|.++|||+++| |++||+|++|||.++.+.+++.+.++. .++.+.+.+..
T Consensus 223 ~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~~dl~~~l~~~~~~~v~l~v~R 277 (449)
T PRK10779 223 PVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQWQTFVTLVRDNPGKPLALEIER 277 (449)
T ss_pred cEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhCCCCEEEEEEEE
Confidence 6899999999999999 999999999999999999999988875 45667777754
No 86
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.27 E-value=0.00045 Score=70.88 Aligned_cols=104 Identities=25% Similarity=0.446 Sum_probs=65.3
Q ss_pred EEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhcCCceeeeec------------cCCCC-------CCC-
Q psy4417 33 IARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIA------------PQGDD-------ASL- 92 (440)
Q Consensus 33 V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~~~~v~l~v~------------p~~~~-------~~~- 92 (440)
|..|.|+|+|+.+| |++||+|++|||+.+.+..++...+. ++.+.+.+. |.... .+.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~D~~~~l~--~e~l~L~V~~rdGe~~~l~Ie~~~dedlG~~f~~~~~ 78 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDLIDYQFLCA--DEELELEVLDANGESHQIEIEKDLDEDLGLEFTTALF 78 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHhc--CCcEEEEEEcCCCeEEEEEEecCCCCCCcEEeccccC
Confidence 57789999999999 99999999999999988888876664 344555553 22111 000
Q ss_pred CCCccccccccccCCCCCC----CCCCCcc--ccceeccCCEEEEeecCCCCc
Q psy4417 93 PIKPVCYMRCLFTYDPKED----SLLPCKE--IGLAFNHGDILQILNQKDPNW 139 (440)
Q Consensus 93 ~~~~~~~vRal~dy~p~~d----~~~p~~e--~~L~f~~GdIl~V~~~~d~~w 139 (440)
..-....=+|.|++--+.. ..+=.++ --|||-.|-.+..+|..+.+|
T Consensus 79 d~~~~C~N~C~FCFidQlP~gmR~sLY~KDDDyRLSFL~GnyiTLTNl~~~d~ 131 (433)
T TIGR03279 79 DGLIQCNNRCPFCFIDQQPPGKRESLYLKDDDYRLSFLYGSYLTLTNLPPAEW 131 (433)
T ss_pred CcccccCCcCceEeccCCCCCCcCcceeccCcchhhhhccceeeecCCCHHHH
Confidence 0001112235555432111 1111111 168999999999999877777
No 87
>KOG3875|consensus
Probab=97.24 E-value=9.5e-05 Score=71.16 Aligned_cols=56 Identities=21% Similarity=0.434 Sum_probs=47.2
Q ss_pred cccccccccCCCCCCCCCCCccccceeccCCEEEEeec-----CCCCceEEEecCCCCCCccccchhHH
Q psy4417 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ-----KDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 97 ~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~-----~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
..+.||+||+.+.+.. +|+|++||+|+|..+ .+++||+.+.. +++..|+||.+|..
T Consensus 268 ~~~arA~YdF~a~np~-------ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~-dg~~tG~iP~NYvk 328 (362)
T KOG3875|consen 268 HEFARALYDFVARNPV-------ELSLKKGDMLAIASKEDQQGVRCEGWLLATR-DGGTTGLIPINYVK 328 (362)
T ss_pred HHHHHHHhhhhcCCHH-------HhhhhcCchhhcccccccCCCCCcceeeeec-cCCeeeeeehhhhh
Confidence 3678999999998765 999999999999774 35679999887 34779999999985
No 88
>PRK10942 serine endoprotease; Provisional
Probab=97.24 E-value=0.0017 Score=68.39 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=50.3
Q ss_pred cEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhcCCceeeeeccC
Q psy4417 30 NLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQ 86 (440)
Q Consensus 30 ~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~~~~v~l~v~p~ 86 (440)
+++|..|.++|+|+++| |+.||.|++|||.++.+.+++.++++..++.+.|.|...
T Consensus 409 gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~~dl~~~l~~~~~~v~l~V~R~ 464 (473)
T PRK10942 409 GVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNIAELRKILDSKPSVLALNIQRG 464 (473)
T ss_pred CeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 58899999999999999 999999999999999999999999988667777777653
No 89
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.23 E-value=0.00074 Score=73.43 Aligned_cols=69 Identities=25% Similarity=0.403 Sum_probs=54.4
Q ss_pred CCccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeEC--Ccc---C--CCHHHHHHHHHhc-CCceeeeeccC
Q psy4417 17 SPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVN--GEN---V--SSPEDLQIEVVKS-DGNIQFTIAPQ 86 (440)
Q Consensus 17 ~~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VN--g~~---v--~t~~e~~~~L~~~-~~~v~l~v~p~ 86 (440)
.++|+.+.. .++.++|..|.+||||++++.|++||.|++|| |.+ + .+.+++..+|++. |..|.|+|.+.
T Consensus 244 ~GIGa~l~~-~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 244 EGIGAVLQM-DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred eEEEEEEEE-eCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 367888865 34568999999999999983399999999999 433 3 5678899999854 66688998763
No 90
>KOG0515|consensus
Probab=97.23 E-value=0.00012 Score=74.91 Aligned_cols=51 Identities=31% Similarity=0.735 Sum_probs=44.4
Q ss_pred ccccccCCCCCCCCCCCccccceeccCCEEEEeec---CCCCceEEEecCCCCCCccccchhHH
Q psy4417 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ---KDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 100 vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~---~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
|=|++||+++.++ +|+|..||-|.|+.. .+.+||-|+. ++..|+||.+++.
T Consensus 686 vYAlwdYeaqf~D-------ELsf~eGd~lTvirr~d~~eteWWwa~l---ng~eGyVPRnylg 739 (752)
T KOG0515|consen 686 VYALWDYEAQFED-------ELSFDEGDELTVIRRDDEVETEWWWARL---NGEEGYVPRNYLG 739 (752)
T ss_pred eEEeecccccccc-------cccccCCceeEEEecCCcchhhhhhHhh---cCcccccchhhhh
Confidence 4589999999988 999999999999874 5678999986 5789999999985
No 91
>KOG2996|consensus
Probab=97.23 E-value=0.0002 Score=74.07 Aligned_cols=39 Identities=33% Similarity=0.878 Sum_probs=35.2
Q ss_pred cceeccCCEEEEeec--CCCCceEEEecCCCCCCccccchhHHH
Q psy4417 120 GLAFNHGDILQILNQ--KDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 120 ~L~f~~GdIl~V~~~--~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
+|||++|||+.|.++ .|.+||.+.. ++..|++|+.|+.+
T Consensus 821 eLSlk~GDvV~i~~k~g~d~GWWkGev---ngrvGwFPstYVee 861 (865)
T KOG2996|consen 821 ELSLKEGDVVKIYDKVGEDQGWWKGEV---NGRVGWFPSTYVEE 861 (865)
T ss_pred hcccccCCEEEEehhccccCceeccee---cCcccccccccccc
Confidence 899999999999994 5789999998 67899999999875
No 92
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.14 E-value=0.0012 Score=68.79 Aligned_cols=56 Identities=38% Similarity=0.569 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHh--cCCceeeeecc
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK--SDGNIQFTIAP 85 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~--~~~~v~l~v~p 85 (440)
.+++|..|.++|||+++| |+.||+|++|||..+.+..++...+.. .++.+.+++..
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R 314 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILR 314 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 458999999999999999 999999999999999888888888874 36678888865
No 93
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.11 E-value=0.00011 Score=71.94 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=68.7
Q ss_pred ccCCCccccccccccccccccccccccccccc-CcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEE-c
Q psy4417 166 FVPPEADYVHKIGICGTRYIKQYNTLQYNSTL-MSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEH-N 243 (440)
Q Consensus 166 ~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~-~ 243 (440)
+++.||+++||+++...+.+.....+...+.+ .=...+.+|++|++.|.+|.+|||++--+... .+ -
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~-----------~~~v 70 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSE-----------SYSA 70 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhh-----------eEcH
Confidence 35679999999988766544322222100000 00467999999999999999999988432222 12 2
Q ss_pred CCccccchhhHHHHHhcCCeEEeecCcch--hhhh
Q psy4417 244 GHLYGTHLDSIREVILSGKICVLDCSPVG--LFTF 276 (440)
Q Consensus 244 g~~yg~~~~~i~~v~~~g~~~il~~~~~g--~~~l 276 (440)
+++|+...+.|+++.++|+.+|| ++..| ++.|
T Consensus 71 ~~f~~~a~~~i~~~~~~g~~pi~-vGGTg~Yi~al 104 (287)
T TIGR00174 71 ADFQTLALNAIADITARGKIPLL-VGGTGLYLKAL 104 (287)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEE-EcCcHHHHHHH
Confidence 77889999999999999999888 66667 3555
No 94
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.09 E-value=0.0018 Score=62.73 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=53.7
Q ss_pred ccEEEEec--CCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhc--CCceeeeeccC
Q psy4417 19 CGLTVEQD--ANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS--DGNIQFTIAPQ 86 (440)
Q Consensus 19 lGiti~~~--~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~--~~~v~l~v~p~ 86 (440)
+|++.... ...++.|..+.++++|+++| |+.||.|++|||.++.+.+++.+++.+. ++.+.+.|...
T Consensus 179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~ 249 (259)
T TIGR01713 179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERD 249 (259)
T ss_pred EeEEEEEeCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEEC
Confidence 45554322 22468899999999999999 9999999999999999999999988864 45778887653
No 95
>KOG2546|consensus
Probab=97.03 E-value=0.00034 Score=70.06 Aligned_cols=52 Identities=29% Similarity=0.672 Sum_probs=47.1
Q ss_pred ccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 100 vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
|.++|||....|+ +|+|..|-||+|+.++|++||.+-. ++..||+|.||+..
T Consensus 426 Vv~iydy~~~Kdd-------eLsf~E~ailyv~kknddgw~EgV~---~~VTglFpgnyve~ 477 (483)
T KOG2546|consen 426 VVAIYDYTADKDD-------ELSFAEGAILYVLKKNDDGWYEGVQ---DGVTGLFPGNYVEP 477 (483)
T ss_pred HHhhccccccccc-------ccccccccEEEEEEecCCcchhhee---cCcceeccCccccc
Confidence 6799999999888 9999999999999999999999977 46799999999854
No 96
>PRK10942 serine endoprotease; Provisional
Probab=97.01 E-value=0.0021 Score=67.66 Aligned_cols=57 Identities=26% Similarity=0.427 Sum_probs=49.7
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhc--CCceeeeeccC
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS--DGNIQFTIAPQ 86 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~--~~~v~l~v~p~ 86 (440)
.+++|..|.++|||+++| |+.||+|++|||..+.+.+++...+... ++.+.+.+...
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~ 369 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRD 369 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 468999999999999999 9999999999999999999999888743 56778877753
No 97
>KOG3655|consensus
Probab=96.98 E-value=0.00034 Score=71.18 Aligned_cols=55 Identities=29% Similarity=0.703 Sum_probs=49.3
Q ss_pred ccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhH
Q psy4417 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQEL 159 (440)
Q Consensus 96 ~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~ 159 (440)
.....+|+|||++..|+ +++|..+|++.+++..|.+||+++. .+|..||+|.||+
T Consensus 426 ~~q~A~A~~dyqAAddt-------Eisf~p~d~it~Id~vdegww~g~~--pdG~~glfPaNyV 480 (484)
T KOG3655|consen 426 EPQTARALYDYQAADDT-------EISFDPPDAITLIDQVDEGWWTGQG--PDGEVGLFPANYV 480 (484)
T ss_pred cCCCccccccccccCCc-------ccccCCccccccccccCCccccccC--CCCCcCccccccc
Confidence 45567899999999988 9999999999999999999999986 4688999999986
No 98
>KOG3632|consensus
Probab=96.94 E-value=0.00055 Score=74.69 Aligned_cols=59 Identities=32% Similarity=0.634 Sum_probs=47.6
Q ss_pred ccccccCCCCCCCCCC-CccccceeccCCEEEEee-cCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 100 MRCLFTYDPKEDSLLP-CKEIGLAFNHGDILQILN-QKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 100 vRal~dy~p~~d~~~p-~~e~~L~f~~GdIl~V~~-~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
.-|+|||+|-.-+..| -.|.+|+|++|+||.|.. ++.++++++.. ++..|+||+|.+++
T Consensus 1141 fVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~---ngr~GlIPcNmvae 1201 (1335)
T KOG3632|consen 1141 FVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL---NGRRGLIPCNMVAE 1201 (1335)
T ss_pred eEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccc---cccccccccccccc
Confidence 3499999995444333 445789999999999987 66778888887 68899999999987
No 99
>PRK08356 hypothetical protein; Provisional
Probab=96.92 E-value=0.0015 Score=60.53 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=46.1
Q ss_pred ecCCCcccchhhccCccccccCHHHHHHHHHcCceeeEEEEcCcccccc
Q psy4417 306 ASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTH 354 (440)
Q Consensus 306 ~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~ 354 (440)
.+++++.++.++.++.+|+|++...|+.++..+.|+||+++.+++|||+
T Consensus 33 is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 33 VSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred EeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 3788888889999999999999999999999999999999999999997
No 100
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=96.91 E-value=0.0018 Score=65.73 Aligned_cols=56 Identities=21% Similarity=0.382 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHh--cCCceeeeecc
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK--SDGNIQFTIAP 85 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~--~~~~v~l~v~p 85 (440)
.+++|..|.++|||+++| |+.||+|++|||..+.+.+++...+.. .++.+.+++..
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R 335 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLR 335 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 468999999999999999 999999999999999999999888874 46777888764
No 101
>PRK10139 serine endoprotease; Provisional
Probab=96.88 E-value=0.0023 Score=67.11 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=49.4
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHh--cCCceeeeecc
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK--SDGNIQFTIAP 85 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~--~~~~v~l~v~p 85 (440)
.+++|..|.++|||+++| |+.||.|++|||..+.+.+++...|.. .++.+.+++..
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R 347 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR 347 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 468999999999999999 999999999999999999999888874 46777888764
No 102
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.87 E-value=0.0053 Score=53.68 Aligned_cols=80 Identities=20% Similarity=0.254 Sum_probs=54.4
Q ss_pred CCCeEEEEee-----CCCCccEEEEecCC-----CcEEEEEEcCCChhhhcCCCCC-CCEEEeECCccCCCHHHHHHHHH
Q psy4417 5 PHPLKKILGT-----GLSPCGLTVEQDAN-----GNLIIARILAGSLIDKQGVLKV-GDVILGVNGENVSSPEDLQIEVV 73 (440)
Q Consensus 5 ~~~r~v~l~r-----~g~~lGiti~~~~~-----~~i~V~~V~~gs~A~~~G~L~~-GD~Il~VNg~~v~t~~e~~~~L~ 73 (440)
...|.+.+.- +...||+++.-..- ..+-|-+|.|+|||+.+| |.+ .|-|+.+++..+.+.+++...++
T Consensus 9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~~l~~~v~ 87 (138)
T PF04495_consen 9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDEDDLFELVE 87 (138)
T ss_dssp SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--STCHHHHHHH
T ss_pred CeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCHHHHHHHHH
Confidence 4456666652 24678999974322 347899999999999999 776 69999999988877788888887
Q ss_pred -hcCCceeeeecc
Q psy4417 74 -KSDGNIQFTIAP 85 (440)
Q Consensus 74 -~~~~~v~l~v~p 85 (440)
+.+.++.|.|.-
T Consensus 88 ~~~~~~l~L~Vyn 100 (138)
T PF04495_consen 88 ANENKPLQLYVYN 100 (138)
T ss_dssp HTTTS-EEEEEEE
T ss_pred HcCCCcEEEEEEE
Confidence 457788888864
No 103
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.86 E-value=0.0022 Score=66.63 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=48.4
Q ss_pred cEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHh-cCCceeeeecc
Q psy4417 30 NLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK-SDGNIQFTIAP 85 (440)
Q Consensus 30 ~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~-~~~~v~l~v~p 85 (440)
++.|..|.++|||+.+| |++||+|++|||.++.+.+++...++. .++.+.+.+..
T Consensus 204 g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~~dl~~~l~~~~~~~v~l~v~R 259 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSWTDFVSAVKENPGKSMDIKVER 259 (420)
T ss_pred CcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCceEEEEEE
Confidence 47899999999999999 999999999999999999999999985 45567777754
No 104
>KOG0197|consensus
Probab=96.83 E-value=0.00027 Score=72.98 Aligned_cols=57 Identities=26% Similarity=0.687 Sum_probs=50.2
Q ss_pred ccccccccCCCCCCCCCCCccccceeccCCE-EEEeecCCCCceEEEecCCCCCCccccchhHHHh
Q psy4417 98 CYMRCLFTYDPKEDSLLPCKEIGLAFNHGDI-LQILNQKDPNWWQAQLIEPTGPMGLVPSQELEER 162 (440)
Q Consensus 98 ~~vRal~dy~p~~d~~~p~~e~~L~f~~GdI-l~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~r 162 (440)
..+-|+++|.+..+. +|+|.+||+ +++++..+..||.|+... .+..|+||+|++++.
T Consensus 12 ~~~valyd~~s~~~~-------dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~-~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 12 TIVVALYDYASRTPE-------DLSFRKGDVVLILLETTNGDWWRARSLQ-LGQEGYIPSNYVARN 69 (468)
T ss_pred ceEEEeccccCCCcc-------ccccccCceEEEeeccCChhHHHHHHhh-cCCCCcCcCceeecc
Confidence 356699999998866 999999999 999999999999998864 478899999999975
No 105
>PRK10898 serine endoprotease; Provisional
Probab=96.82 E-value=0.0027 Score=64.38 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=48.6
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHh--cCCceeeeecc
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK--SDGNIQFTIAP 85 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~--~~~~v~l~v~p 85 (440)
.+++|..|.++|||+++| |+.||.|++|||.++.+.+++...+.. .++.+.+++..
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R 336 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMR 336 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 468999999999999999 999999999999999888888887764 45667777764
No 106
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.79 E-value=0.00082 Score=66.71 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=60.5
Q ss_pred eeecCCCcccchhhccCccccccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEe-------------
Q psy4417 304 FFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVL------------- 370 (440)
Q Consensus 304 f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~------------- 370 (440)
+..+.+|++++..|.+|++|||++..+|......+.|++++ .+.|++++++|+.+++
T Consensus 42 ~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a----------~~~i~~i~~~gk~pIlvGGt~~Y~~al~~ 111 (307)
T PRK00091 42 RGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA----------LAAIADILARGKLPILVGGTGLYIKALLE 111 (307)
T ss_pred ecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH----------HHHHHHHHhCCCCEEEECcHHHHHHHhcc
Confidence 55688999999999999999999999999999999999875 6778888888888765
Q ss_pred ---cCCCcHHHHHHHHHH
Q psy4417 371 ---DCSPVEEDIKRTLEE 385 (440)
Q Consensus 371 ---~~~~s~e~l~~~l~~ 385 (440)
+.|++.++++++++.
T Consensus 112 g~~~~p~~~~~~r~~l~~ 129 (307)
T PRK00091 112 GLSPLPPADPELRAELEA 129 (307)
T ss_pred CCCCCCCCCHHHHHHHHH
Confidence 357777777777763
No 107
>KOG1264|consensus
Probab=96.70 E-value=0.0015 Score=70.22 Aligned_cols=58 Identities=24% Similarity=0.538 Sum_probs=50.7
Q ss_pred ccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHHh
Q psy4417 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEER 162 (440)
Q Consensus 96 ~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~r 162 (440)
...-+||||+|-+..++ +|+|-+|-|++++.+..++||.+..- +.-.|++||+|+++-
T Consensus 773 ~~vt~kAL~~Yka~r~D-------ELSFpk~aiItnv~keeg~wWrGdYG--g~iq~wfPsnyVeei 830 (1267)
T KOG1264|consen 773 PQVTVKALYDYKAKRSD-------ELSFPKGAIITNVSKEEGGWWRGDYG--GRIQQWFPSNYVEEI 830 (1267)
T ss_pred cchhhhhhhccccCCcc-------cccccccceeEeeeccCCceeecccc--cceeeeccHHHhhhh
Confidence 34779999999999888 99999999999999999999998762 245799999999974
No 108
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.57 E-value=0.0079 Score=61.42 Aligned_cols=71 Identities=27% Similarity=0.434 Sum_probs=52.6
Q ss_pred eeCCCCccEEEEecCCCcEEEE--EEc-----CCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhc-CCceeeeec
Q psy4417 13 GTGLSPCGLTVEQDANGNLIIA--RIL-----AGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS-DGNIQFTIA 84 (440)
Q Consensus 13 ~r~g~~lGiti~~~~~~~i~V~--~V~-----~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~-~~~v~l~v~ 84 (440)
.-+|.++|+.+.. +|.++|. .|. .++||+.+| |+.||.|++|||.++.+.+++.++++.. ++.+.+.+.
T Consensus 92 ~pgG~~iGI~l~t--~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~~DL~~iL~~~~g~~V~LtV~ 168 (402)
T TIGR02860 92 IPGGQSIGVKLNT--KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNMDDLANLINKAGGEKLTLTIE 168 (402)
T ss_pred EECCEEEEEEEec--CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCeEEEEEE
Confidence 3467788888865 2333333 332 258999999 9999999999999999999999998865 456677765
Q ss_pred cC
Q psy4417 85 PQ 86 (440)
Q Consensus 85 p~ 86 (440)
+.
T Consensus 169 R~ 170 (402)
T TIGR02860 169 RG 170 (402)
T ss_pred EC
Confidence 43
No 109
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.57 E-value=0.011 Score=47.58 Aligned_cols=69 Identities=29% Similarity=0.428 Sum_probs=45.3
Q ss_pred CccEEEEecCCCcEEEEEEcCC--------ChhhhcC-CCCCCCEEEeECCccCCCHHHHHHHHH-hcCCceeeeeccCC
Q psy4417 18 PCGLTVEQDANGNLIIARILAG--------SLIDKQG-VLKVGDVILGVNGENVSSPEDLQIEVV-KSDGNIQFTIAPQG 87 (440)
Q Consensus 18 ~lGiti~~~~~~~i~V~~V~~g--------s~A~~~G-~L~~GD~Il~VNg~~v~t~~e~~~~L~-~~~~~v~l~v~p~~ 87 (440)
.||+-+.-. ++..-|.+|.+| ||....| .+++||.|++|||+++........+|. .++..+.|+|....
T Consensus 2 ~LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 2 LLGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPYRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp B-SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-ST
T ss_pred ccceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHHHHhcccCCCEEEEEEecCC
Confidence 367777664 466888998876 6666666 356999999999999966566777777 55778999997754
No 110
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=96.49 E-value=0.0036 Score=65.59 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=46.6
Q ss_pred EEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhc--CCceeeeeccCC
Q psy4417 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS--DGNIQFTIAPQG 87 (440)
Q Consensus 31 i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~--~~~v~l~v~p~~ 87 (440)
.+|..|.++|||+++| |+.||+|++|||+.+.+.+++...+... ++.+.+++.+..
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~g 185 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFG 185 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCC
Confidence 3688999999999999 9999999999999998888888777643 456777776543
No 111
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.44 E-value=0.0058 Score=63.48 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=47.8
Q ss_pred cEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhcCCceeeeeccC
Q psy4417 30 NLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQ 86 (440)
Q Consensus 30 ~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~~~~v~l~v~p~ 86 (440)
+.+|..|.++|||+++| |+.||.|++|||..+.+..++...+....+.+.+.+...
T Consensus 129 g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~~~ia~~~~~v~~~I~r~ 184 (420)
T TIGR00054 129 GPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVRQQIADIAGEPMVEILAE 184 (420)
T ss_pred CceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhcccceEEEEEe
Confidence 46789999999999999 999999999999999888888888775557777766553
No 112
>KOG1029|consensus
Probab=96.37 E-value=0.0022 Score=68.56 Aligned_cols=53 Identities=25% Similarity=0.675 Sum_probs=44.9
Q ss_pred cccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHHh
Q psy4417 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEER 162 (440)
Q Consensus 99 ~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~r 162 (440)
+.-|+|.|.+..+. +|+|.+||++.|+.+. ..||.+.. .+..|++|++|+.+-
T Consensus 815 q~iA~y~wrakke~-------dLsFskgd~I~Vlekq-emwW~G~v---~g~~GwFPksYVk~~ 867 (1118)
T KOG1029|consen 815 QAIALYPWRAKKEN-------DLSFSKGDTITVLEKQ-EMWWFGEV---AGEIGWFPKSYVKEV 867 (1118)
T ss_pred hHHhhccccccccc-------cccccCCCeeeeehhc-cceecccc---cCccCcCcHHhhhhc
Confidence 55688888888877 9999999999999764 47999966 478999999999863
No 113
>KOG1843|consensus
Probab=96.04 E-value=0.0024 Score=63.84 Aligned_cols=51 Identities=25% Similarity=0.682 Sum_probs=43.1
Q ss_pred cccccccCCCCCCCCCCCccccceeccCCEEEEeec--CCCCceEEEecCCCCCCccccchhH
Q psy4417 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ--KDPNWWQAQLIEPTGPMGLVPSQEL 159 (440)
Q Consensus 99 ~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~--~d~~ww~a~~~~~~~~~G~iPs~~~ 159 (440)
.+.|++++....-. +|+|++||||.|+++ ...+||+++. ++..|++|-+|+
T Consensus 418 ~a~a~ysfage~~G-------Dl~f~kgDii~il~ks~s~~dwwtgr~---~~~egifPanyv 470 (473)
T KOG1843|consen 418 IATALYSFAGEQPG-------DLSFQKGDIITILKKSDSANDWWTGRG---NGYEGIFPANYV 470 (473)
T ss_pred eeeeeehhccCCCC-------CcccccCceEEEecCCcchhhHHHhhc---ccccccccccee
Confidence 56788888877655 999999999999995 4678999988 578999999886
No 114
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.76 E-value=0.025 Score=55.61 Aligned_cols=90 Identities=19% Similarity=0.114 Sum_probs=60.3
Q ss_pred eEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhccCccccccCHHHHHHHHHcCceee
Q psy4417 263 ICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLE 342 (440)
Q Consensus 263 ~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle 342 (440)
++|+....+|...|...|.+... . .+|+.-+. ..-.-.+.+|+.+.+.|.+|+.|||++- ++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~-~----~iis~Ds~-qvY~~l~IgTakp~~~e~~~v~hhlid~------------~~ 63 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLN-A----EIISVDSM-QIYKGMDIGTAKPSLQEREGIPHHLIDI------------LD 63 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCC-C----cEEEechh-heeeeccccCCCCCHHHHcCccEEEEEE------------ec
Confidence 46666666777777766654322 1 12211000 0003347789999999999999999983 44
Q ss_pred EEEEc--CccccccHHHHHHHHhcCCeeEe
Q psy4417 343 YGEHN--GHLYGTHLDSIREVILSGKICVL 370 (440)
Q Consensus 343 ~~~~~--~~~yGt~~~~i~~~~~~~~~~i~ 370 (440)
+.+.. +.++++..+.|++++++|+++++
T Consensus 64 ~~~~~~v~~f~~~a~~~i~~~~~~g~~pi~ 93 (287)
T TIGR00174 64 PSESYSAADFQTLALNAIADITARGKIPLL 93 (287)
T ss_pred hhheEcHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 44433 67889999999999999998765
No 115
>KOG4278|consensus
Probab=95.42 E-value=0.012 Score=62.49 Aligned_cols=53 Identities=26% Similarity=0.560 Sum_probs=44.2
Q ss_pred cccccccCCCCCCCCCCCccccceeccCCEEEEeec-CCCCceEEEecCCCCCCccccchhHHH
Q psy4417 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ-KDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 99 ~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~-~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
..-||||+.+.-|. .|++.+||-|+|+.. ..++|+.||- ++++ |+|||||...
T Consensus 92 LFVALYDFvasGdn-------tLSitKGeklRvLGYN~NgEWcEart--KNGq-GWVPSNyItP 145 (1157)
T KOG4278|consen 92 LFVALYDFVASGDN-------TLSITKGEKLRVLGYNKNGEWCEART--KNGQ-GWVPSNYITP 145 (1157)
T ss_pred eeEeeeeeeccccc-------eeeeecCceEEEeeecCCCcceeecc--cCCC-cccccccccc
Confidence 34599999998888 999999999999995 4778888885 3454 9999999875
No 116
>KOG3532|consensus
Probab=95.36 E-value=0.046 Score=58.16 Aligned_cols=69 Identities=23% Similarity=0.409 Sum_probs=57.6
Q ss_pred CCCccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhcCCceeeeecc
Q psy4417 16 LSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAP 85 (440)
Q Consensus 16 g~~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~~~~v~l~v~p 85 (440)
..++|+.........+-|..|.++++|+++. +.+||++++|||+++.+..++...++...+.+...+..
T Consensus 385 s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 385 SSPIGLVFDKNTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRSERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred cCceeEEEecCCceEEEEEEecCCChhhHhc-CCCcceEEEecCccchhHHHHHHHHHhcccceEEEEee
Confidence 4577887766444457799999999999998 99999999999999999999999999887777655544
No 117
>KOG4575|consensus
Probab=95.19 E-value=0.022 Score=59.95 Aligned_cols=60 Identities=25% Similarity=0.579 Sum_probs=49.8
Q ss_pred CCCccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHH
Q psy4417 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 93 ~~~~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
+...++-|||+|.+.++... +|.|..||+++++.-+|+-||-..+.+ ....|++|||.+.
T Consensus 4 ~~q~p~~vrA~y~w~ge~eG-------dl~f~egDlie~trI~dgkwwi~lhrN-k~~~g~fpsNFvh 63 (874)
T KOG4575|consen 4 PKQLPCMVRALYAWPGEREG-------DLKFTEGDLIEQTRIEDGKWWILLHRN-KDEDGLFPSNFVH 63 (874)
T ss_pred ccCCCceEEeeccCCCCccc-------ccceecccceeEEeeccceeeeeeeec-ccccccCccccee
Confidence 34566789999988887765 999999999999998898888877754 3578999999883
No 118
>PRK04040 adenylate kinase; Provisional
Probab=95.01 E-value=0.11 Score=47.92 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHHHHHHh---cCCccEEEEcCC--HHHHHHHHHHHH
Q psy4417 375 VEEDIKRTLEESACLQRSY---ERFIDKVIVNED--FDETFRTVIELL 417 (440)
Q Consensus 375 s~e~l~~~l~~~~~~e~~~---~~~fd~vi~Ndd--l~~a~~~l~~~i 417 (440)
+.+.++++++.+......| .+.|+++|+|+| ++.|+++|.++|
T Consensus 140 s~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 140 TEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 6778888887765544433 356999999999 999999999987
No 119
>KOG3129|consensus
Probab=94.95 E-value=0.06 Score=49.61 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=39.0
Q ss_pred cEEEEEEcCCChhhhcCCCCCCCEEEeECCccC---CCHHHHHHHHHh-cCCceeeeecc
Q psy4417 30 NLIIARILAGSLIDKQGVLKVGDVILGVNGENV---SSPEDLQIEVVK-SDGNIQFTIAP 85 (440)
Q Consensus 30 ~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v---~t~~e~~~~L~~-~~~~v~l~v~p 85 (440)
-++|..|.|+|||+.+| |+.||+|+.+..+.- ....+.....++ -+..+.+++..
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R 198 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIR 198 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEec
Confidence 37899999999999999 999999999877655 333444444332 34455555544
No 120
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=94.88 E-value=0.031 Score=58.14 Aligned_cols=41 Identities=34% Similarity=0.494 Sum_probs=37.4
Q ss_pred CccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCc
Q psy4417 18 PCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGE 60 (440)
Q Consensus 18 ~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~ 60 (440)
-||+.+.. +++...|..|.++|||..+| |..||.|++|||.
T Consensus 452 ~LGl~v~~-~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 452 YLGLKVKS-EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred ccceEecc-cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 68888875 45779999999999999999 9999999999999
No 121
>KOG1702|consensus
Probab=94.72 E-value=0.033 Score=50.93 Aligned_cols=55 Identities=22% Similarity=0.546 Sum_probs=45.0
Q ss_pred ccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHH
Q psy4417 98 CYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 98 ~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
.-.||.|||.++..+ +.+|.-||-+..+...|++|--+.... ++..|+.|.||.+
T Consensus 208 ktyra~ydysaqded-------evsF~dgd~ivnvq~iddGWmygtv~r-tg~tGmlpaNyie 262 (264)
T KOG1702|consen 208 KTYRAFYDYSAQDED-------EVSFVDGDYIVNVQSIDDGWMYGTVVR-TGWTGMLPANYIE 262 (264)
T ss_pred ccchhhccCcccCcc-------eeEEecCCeEEEEEeccCCceeeEEEe-ccccCCCchhhee
Confidence 557899999998777 999999999988888888885555543 4789999999863
No 122
>KOG1738|consensus
Probab=94.44 E-value=0.068 Score=56.66 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=60.0
Q ss_pred eCCCCccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceeeeec
Q psy4417 14 TGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQFTIA 84 (440)
Q Consensus 14 r~g~~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l~v~ 84 (440)
++..++|+-|...-+|..+|+.+.+++||+..+.|..||+++.||++.+ +.+..++..|+.....+.+.|.
T Consensus 210 kp~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lk 282 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLK 282 (638)
T ss_pred CcccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeee
Confidence 6778999999887778899999999999999999999999999999987 7788888888766555554443
No 123
>KOG3557|consensus
Probab=94.29 E-value=0.013 Score=61.91 Aligned_cols=55 Identities=25% Similarity=0.633 Sum_probs=46.3
Q ss_pred cccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 97 ~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
..++..+||+.+.+.. +|++.+||+|.|++ +.-+||.++.- .+..|+||++-+..
T Consensus 500 ~k~~~~~Ydf~arNs~-------ELsV~k~E~LEvl~-d~R~WW~~kn~--~G~~GyvP~nIL~~ 554 (721)
T KOG3557|consen 500 KKWVLVLYDFQARNSS-------ELSVKKGEVLEVLD-DGRKWWKVKNG--HGRAGYVPSNILAP 554 (721)
T ss_pred ceeeeeehhhhcccch-------hhhhhhhhhhhhhh-ccccceeccCc--cCCCCCcchhhhcc
Confidence 4578889999998877 99999999999998 45579988763 47899999998865
No 124
>KOG3632|consensus
Probab=94.17 E-value=0.046 Score=60.34 Aligned_cols=61 Identities=38% Similarity=0.549 Sum_probs=50.8
Q ss_pred ccccccccCCCCCCCCCCCccccceeccCCEEEEeec-CCCCceEEEecCCCCCCccccchhHHH
Q psy4417 98 CYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ-KDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 98 ~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~-~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
..+-|.+||+|+..+.--..+++|.|..|||+.|... +|++.+.+.+ +++.|++|++.+..
T Consensus 1245 ~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGel---ngqkglvpsnfle~ 1306 (1335)
T KOG3632|consen 1245 RQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGEL---NGQKGLVPSNFLEA 1306 (1335)
T ss_pred hhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCccccccc---CCccCccccccccC
Confidence 3456889999998887777789999999999999984 5667777766 68999999998865
No 125
>KOG0606|consensus
Probab=94.09 E-value=0.1 Score=58.70 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=64.7
Q ss_pred EEEEeeCCCCccEEEEe-----cCCCc----EEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCC
Q psy4417 9 KKILGTGLSPCGLTVEQ-----DANGN----LIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDG 77 (440)
Q Consensus 9 ~v~l~r~g~~lGiti~~-----~~~~~----i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~ 77 (440)
.+++.+.+.++||++.. |.... =.|..|.+|+||..+| |+.||.|+.|||.++ ..|.|+.++|-+.+.
T Consensus 629 pI~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 629 PITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGN 707 (1205)
T ss_pred ceeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence 37788899999987653 11110 2477899999999999 999999999999999 789999999998888
Q ss_pred ceeeeeccCCCC
Q psy4417 78 NIQFTIAPQGDD 89 (440)
Q Consensus 78 ~v~l~v~p~~~~ 89 (440)
.+.+.+.|-...
T Consensus 708 ~v~~~ttplenT 719 (1205)
T KOG0606|consen 708 KVTLRTTPLENT 719 (1205)
T ss_pred eeEEEeeccccc
Confidence 888888776543
No 126
>KOG3601|consensus
Probab=94.02 E-value=0.014 Score=53.82 Aligned_cols=48 Identities=35% Similarity=0.668 Sum_probs=39.0
Q ss_pred ccccCCCCCCCCCCCccccceeccCCEEEEeec-CCCCceEEEecCCCCCCccccchhH
Q psy4417 102 CLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ-KDPNWWQAQLIEPTGPMGLVPSQEL 159 (440)
Q Consensus 102 al~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~-~d~~ww~a~~~~~~~~~G~iPs~~~ 159 (440)
+++++....++ +|+|.+||+|.++|. ++.+|..|.+ ++..|+||.|+-
T Consensus 5 a~n~f~a~i~d-------ELsFlkg~~lk~l~~~d~~nw~~ael---~g~~g~~P~Nai 53 (222)
T KOG3601|consen 5 AKNDFLAGIRD-------ELSFLKGDNLKILNMEDDINWYKAEL---DGPEGFIPKNAI 53 (222)
T ss_pred hhhhhhhcCcc-------cceeecCCceEecchHHhhhhhhHhh---cCccccCccccc
Confidence 34555555555 999999999999994 5779999987 577999999987
No 127
>PLN02840 tRNA dimethylallyltransferase
Probab=93.88 E-value=0.0077 Score=62.01 Aligned_cols=108 Identities=9% Similarity=0.085 Sum_probs=71.0
Q ss_pred HHHhhhcccCCCccccccccccccccccccccccccccc-CcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCee
Q psy4417 159 LEERRKAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTL-MSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFL 237 (440)
Q Consensus 159 ~~~rr~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fl 237 (440)
.......+.+.||+++||+++...+.++....+..-+.+ .-..++.+|.+|.+.|.++.+|||++--+..+..
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~y------ 90 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDY------ 90 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCce------
Confidence 334455677899999999998776544322222211100 0046778999999999999999997654332211
Q ss_pred EEEEEcCCccccchhhHHHHHhcCCeEEeecCcch--hhhhh
Q psy4417 238 EYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVG--LFTFL 277 (440)
Q Consensus 238 e~~~~~g~~yg~~~~~i~~v~~~g~~~il~~~~~g--~~~l~ 277 (440)
.-+.++..-.+.|+++.++|+++|| ++..| ++.|+
T Consensus 91 ----Sv~~F~~~A~~~I~~i~~rgkiPIv-VGGTGlYl~aLl 127 (421)
T PLN02840 91 ----SVGAFFDDARRATQDILNRGRVPIV-AGGTGLYLRWYI 127 (421)
T ss_pred ----eHHHHHHHHHHHHHHHHhcCCCEEE-EcCccHHHHHHh
Confidence 1245566668899999999999888 66667 35553
No 128
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.18 Score=50.96 Aligned_cols=57 Identities=30% Similarity=0.499 Sum_probs=48.2
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhc--CCceeeeeccC
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS--DGNIQFTIAPQ 86 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~--~~~v~l~v~p~ 86 (440)
.+++|..|.+++||+++| ++.||.|+++||..+.+..+....+... +..+.+.+...
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~ 328 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRG 328 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEEC
Confidence 348999999999999999 9999999999999998888888777633 56777777654
No 129
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.36 E-value=0.1 Score=47.12 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.3
Q ss_pred cCCccccchhhHHHHHhcCCeEEeecCcch
Q psy4417 243 NGHLYGTHLDSIREVILSGKICVLDCSPVG 272 (440)
Q Consensus 243 ~g~~yg~~~~~i~~v~~~g~~~il~~~~~g 272 (440)
.+..|++..+.+.+.+++|..+|++..-.+
T Consensus 67 ~~~~y~~~~~~~~~~l~~G~~VIvD~~~~~ 96 (175)
T cd00227 67 FRLLEGAWYEAVAAMARAGANVIADDVFLG 96 (175)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeeeccC
Confidence 346899999999999999999999976554
No 130
>PRK00098 GTPase RsgA; Reviewed
Probab=93.13 E-value=0.027 Score=55.82 Aligned_cols=98 Identities=9% Similarity=-0.090 Sum_probs=64.4
Q ss_pred cccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccC------------CCcceecCHHHHHHhhh
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEEN------------GQNYWFTSREVMERDIQ 232 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~------------g~~y~fvs~~~f~~~i~ 232 (440)
...+.|++++||.++++.+.........-. .....--.||||.++..+.+ +.+|++++.+++.....
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v-~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f~ 244 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEI-SEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYFP 244 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcce-eccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHHH
Confidence 345679999999999887654322211100 00001224799877665544 34577889988887765
Q ss_pred c-CCeeEEEEEcC-CccccchhhHHHHHhcCCe
Q psy4417 233 D-HKFLEYGEHNG-HLYGTHLDSIREVILSGKI 263 (440)
Q Consensus 233 ~-~~fle~~~~~g-~~yg~~~~~i~~v~~~g~~ 263 (440)
. ..+.+...+.+ ..|+.+-.+|++.++.|++
T Consensus 245 ~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i 277 (298)
T PRK00098 245 EFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEI 277 (298)
T ss_pred HHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCC
Confidence 4 55566666666 5688999999999999984
No 131
>KOG3771|consensus
Probab=92.72 E-value=0.065 Score=55.02 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=39.2
Q ss_pred CCccccccccccCCCCCCCCCCCccccceeccCCEEEEee-cCCCCceEEEecC
Q psy4417 94 IKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILN-QKDPNWWQAQLIE 146 (440)
Q Consensus 94 ~~~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~-~~d~~ww~a~~~~ 146 (440)
++....|.++++|.....+ +|+|..||+|.|+. .+..+||.+|+.|
T Consensus 397 p~~~~~v~a~~dy~a~~~d-------eLsf~~gd~i~vi~s~~~~e~~eg~~mg 443 (460)
T KOG3771|consen 397 PGFLYKVKALHDYAAQDTD-------ELSFEAGDVILVIPSDNPEEQDEGWLMG 443 (460)
T ss_pred CCCccceeccccccccccc-------cccccCCCEEEEecCCCccchhhHHHhh
Confidence 3455679999999998877 99999999999998 4577899999964
No 132
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=92.07 E-value=0.48 Score=44.73 Aligned_cols=48 Identities=29% Similarity=0.470 Sum_probs=39.5
Q ss_pred CCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhc--CCceeeeeccC
Q psy4417 38 AGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS--DGNIQFTIAPQ 86 (440)
Q Consensus 38 ~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~--~~~v~l~v~p~ 86 (440)
+++.=+.+| |+.||..+++|+.++..++++..+|+.. ...+.|+|...
T Consensus 216 d~slF~~sg-lq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~ 265 (275)
T COG3031 216 DGSLFYKSG-LQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRR 265 (275)
T ss_pred Ccchhhhhc-CCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEec
Confidence 445667789 9999999999999999999999888843 56778888754
No 133
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=91.87 E-value=0.35 Score=47.50 Aligned_cols=54 Identities=22% Similarity=0.409 Sum_probs=47.5
Q ss_pred cEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHh--cCCceeeeecc
Q psy4417 30 NLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK--SDGNIQFTIAP 85 (440)
Q Consensus 30 ~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~--~~~~v~l~v~p 85 (440)
++++..+..++++. |.|+.||.|++|||.++.+.+|+...+++ .++++++....
T Consensus 131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r 186 (342)
T COG3480 131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYER 186 (342)
T ss_pred eEEEEEccCCcchh--ceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEe
Confidence 37899999999984 67999999999999999999999999984 48889988874
No 134
>KOG2222|consensus
Probab=91.78 E-value=0.13 Score=52.79 Aligned_cols=65 Identities=29% Similarity=0.571 Sum_probs=53.8
Q ss_pred cccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHH---HhhhcccCCCccc
Q psy4417 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE---ERRKAFVPPEADY 173 (440)
Q Consensus 99 ~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~---~rr~~~~~~~~~~ 173 (440)
..||+.|+....|+ +|.|++.||+.|+...|..-|.+.. ++-+|++|.+.+. ||-+.+.+.|-..
T Consensus 550 rakal~df~r~ddd-------elgfrkndiitiisekdehcwvgel---nglrgwfpakfvellder~k~yt~~gdda 617 (848)
T KOG2222|consen 550 RAKALHDFAREDDD-------ELGFRKNDIITIISEKDEHCWVGEL---NGLRGWFPAKFVELLDERGKLYTIAGDDA 617 (848)
T ss_pred HHHHHhhhhhcccc-------ccccccccEEEEeecCCcceeeecc---ccccccchHHHHHHHHhccceeeeccccc
Confidence 45688899888877 9999999999999999999999988 6789999999876 5666666655443
No 135
>KOG3523|consensus
Probab=91.62 E-value=0.089 Score=55.48 Aligned_cols=54 Identities=24% Similarity=0.619 Sum_probs=45.6
Q ss_pred ccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 100 vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
|-+.-.|.|...+ +|++..|||+.|+.+..++|.++.+.. +|..|++|+.+.++
T Consensus 611 v~~~~sy~a~q~D-------el~Le~~Dvv~v~~k~~DGWl~GeRl~-Dge~GWFP~~~vee 664 (695)
T KOG3523|consen 611 VQCVHSYKAKQPD-------ELTLELADVVNVLQKTPDGWLEGERLR-DGERGWFPSSYVEE 664 (695)
T ss_pred hheeeccccCCCc-------eeeeehhhhhhhhhcCCCccccccccc-cCccCcchHHHHHH
Confidence 4445566676665 999999999999999999999999975 48899999999987
No 136
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=91.47 E-value=1.7 Score=39.02 Aligned_cols=114 Identities=21% Similarity=0.217 Sum_probs=79.8
Q ss_pred eeecCCCcccchhhccCccccccCHHHHHHHHHcCceeeEEEEcCccccccHHHHHHHHhcCCeeEe-------------
Q psy4417 304 FFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVL------------- 370 (440)
Q Consensus 304 f~~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~------------- 370 (440)
|+--.-|||...+- .+.--+|+.+|.++..+|.|.-.=+-+|.+||++. .|...++.|..++.
T Consensus 37 fvrRvITRpa~ag~---EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygip~-eId~wl~~G~vvl~NgSRa~Lp~arrr 112 (192)
T COG3709 37 FVRRVITRPADAGG---EDHDALSEAEFNTRAGQGAFALSWQAHGLSYGIPA-EIDLWLAAGDVVLVNGSRAVLPQARRR 112 (192)
T ss_pred EEEEEecccCCCCc---ccccccCHHHHHHHhhcCceeEEehhcCccccCch-hHHHHHhCCCEEEEeccHhhhHHHHHh
Confidence 66667788888774 45667899999999999999998899999999875 47788888876432
Q ss_pred -------cCCCcHHHHHHHHHHH---------HHHHHH--h-cCCccEE-EEcC-CHHHHHHHHHHHHHhcc
Q psy4417 371 -------DCSPVEEDIKRTLEES---------ACLQRS--Y-ERFIDKV-IVNE-DFDETFRTVIELLDTLS 421 (440)
Q Consensus 371 -------~~~~s~e~l~~~l~~~---------~~~e~~--~-~~~fd~v-i~Nd-dl~~a~~~l~~~i~~~~ 421 (440)
.+.-+.+.|.+||.+. +++... | ....|.+ |.|+ +++.|.++|..++.+.+
T Consensus 113 y~~Llvv~ita~p~VLaqRL~~RGREs~eeI~aRL~R~a~~~~~~~dv~~idNsG~l~~ag~~ll~~l~~~~ 184 (192)
T COG3709 113 YPQLLVVCITASPEVLAQRLAERGRESREEILARLARAARYTAGPGDVTTIDNSGELEDAGERLLALLHQDS 184 (192)
T ss_pred hhcceeEEEecCHHHHHHHHHHhccCCHHHHHHHHHhhcccccCCCCeEEEcCCCcHHHHHHHHHHHHHhhc
Confidence 1233566666666532 222211 1 2356654 4453 49999999999997443
No 137
>KOG1451|consensus
Probab=91.43 E-value=0.26 Score=51.93 Aligned_cols=52 Identities=27% Similarity=0.571 Sum_probs=41.4
Q ss_pred cccccccCCCCCCCCCCCccccceeccCCEEEEee-cCCCCceEEEecCCCCCCccccchhHH
Q psy4417 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILN-QKDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 99 ~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~-~~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
.+++++.-.+..+. +|+|..|.|+.-+- ...++|-++++ +|..|+||+||+.
T Consensus 758 k~k~lyAc~a~h~s-------elsf~~gt~f~nv~~S~e~Gwl~GtL---nGktglip~nyve 810 (812)
T KOG1451|consen 758 RVKTLYACTADHHS-------ELSFEPGTIFTNVYESNEDGWLVGTL---NGKTGLIPSNYVE 810 (812)
T ss_pred cccceeccCCCCcc-------cccccCcceeeeecccCCCCceeeec---CCCcccCcccccC
Confidence 45556666666666 89999999998776 56788999988 6889999999974
No 138
>KOG1320|consensus
Probab=90.62 E-value=0.55 Score=49.03 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=46.0
Q ss_pred cEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhcCC--ceeeeecc
Q psy4417 30 NLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDG--NIQFTIAP 85 (440)
Q Consensus 30 ~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~~~--~v~l~v~p 85 (440)
.++|++|.+++++...+ +..||+|+.|||+++.+..++..++..+.. .+.+...+
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~l~~~i~~~~~~~~v~vl~~~ 455 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKHLYELIEECSTEDKVAVLDRR 455 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHHHHHHHHhcCcCceEEEEEec
Confidence 37899999999999988 999999999999999999999999986643 44444443
No 139
>KOG1421|consensus
Probab=90.57 E-value=0.42 Score=51.29 Aligned_cols=57 Identities=28% Similarity=0.435 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHH-hcCCceeeeeccCC
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVV-KSDGNIQFTIAPQG 87 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~-~~~~~v~l~v~p~~ 87 (440)
+-++|..|.++|+|++ .|.+||.++.||+..+....++.++|- +.++.+.|++..+.
T Consensus 303 gmLvV~~vL~~gpa~k--~Le~GDillavN~t~l~df~~l~~iLDegvgk~l~LtI~Rgg 360 (955)
T KOG1421|consen 303 GMLVVETVLPEGPAEK--KLEPGDILLAVNSTCLNDFEALEQILDEGVGKNLELTIQRGG 360 (955)
T ss_pred eeEEEEEeccCCchhh--ccCCCcEEEEEcceehHHHHHHHHHHhhccCceEEEEEEeCC
Confidence 3478999999999997 589999999999988877888888776 45777777776553
No 140
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=90.52 E-value=0.96 Score=44.11 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=42.2
Q ss_pred EEEEEEcCCCh---hhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhc--CCceeeeeccC
Q psy4417 31 LIIARILAGSL---IDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS--DGNIQFTIAPQ 86 (440)
Q Consensus 31 i~V~~V~~gs~---A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~--~~~v~l~v~p~ 86 (440)
+.-=++.||.. =..+| |+.||.+++|||.++...+++.++++.. ...++|+|...
T Consensus 206 l~GYrl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRd 265 (276)
T PRK09681 206 IVGYAVKPGADRSLFDASG-FKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRK 265 (276)
T ss_pred ceEEEECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEEC
Confidence 43446777753 35678 9999999999999999899999888855 45567777554
No 141
>PF12812 PDZ_1: PDZ-like domain
Probab=89.89 E-value=1.1 Score=35.22 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=38.9
Q ss_pred EEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhcCC
Q psy4417 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDG 77 (440)
Q Consensus 31 i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~~~ 77 (440)
+++.....|+++...| +..|-.|.+||++++.+.+++.+.++...+
T Consensus 32 gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPDLDDFIKVVKKIPD 77 (78)
T ss_pred EEEEEecCCChhhhCC-CCCCeEEEeECCcCCcCHHHHHHHHHhCCC
Confidence 4555567888888776 999999999999999999999999987654
No 142
>PRK00698 tmk thymidylate kinase; Validated
Probab=88.47 E-value=0.36 Score=44.33 Aligned_cols=85 Identities=13% Similarity=-0.085 Sum_probs=44.8
Q ss_pred cccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhc--CCeeEEEEE
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQD--HKFLEYGEH 242 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~--~~fle~~~~ 242 (440)
.+++.|++++||+++++.+.+... ... ...++++.|+. +.. .+.|...+.+ ..+..+...
T Consensus 5 ~I~ieG~~gsGKsT~~~~L~~~l~-~~~--------~~~~~~~~p~~-~~~--------~~~~~~~~~~~~~~~~~~~~~ 66 (205)
T PRK00698 5 FITIEGIDGAGKSTQIELLKELLE-QQG--------RDVVFTREPGG-TPL--------GEKLRELLLDPNEEMDDKTEL 66 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HcC--------CceeEeeCCCC-ChH--------HHHHHHHHhccccCCCHHHHH
Confidence 456789999999999886643211 000 12344565652 222 2444444432 222222111
Q ss_pred ---cCCccccchhhHHHHHhcCCeEEee
Q psy4417 243 ---NGHLYGTHLDSIREVILSGKICVLD 267 (440)
Q Consensus 243 ---~g~~yg~~~~~i~~v~~~g~~~il~ 267 (440)
-.+.|+.....|...+++|.++|+|
T Consensus 67 ~~~~~~r~~~~~~~i~~~l~~g~~vi~D 94 (205)
T PRK00698 67 LLFYAARAQHLEEVIKPALARGKWVISD 94 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEC
Confidence 1233444455566666789999987
No 143
>PRK00098 GTPase RsgA; Reviewed
Probab=86.42 E-value=2.3 Score=42.10 Aligned_cols=112 Identities=17% Similarity=0.091 Sum_probs=71.5
Q ss_pred cccchhhHHHHHhcCC-eEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccchhhcc------
Q psy4417 247 YGTHLDSIREVILSGK-ICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEEN------ 319 (440)
Q Consensus 247 yg~~~~~i~~v~~~g~-~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~~e~~------ 319 (440)
.|..++.+.+.+. |+ .+++..+..|..+|++.|+.... .... .++. . . ---.||||..+..+.+
T Consensus 151 ~g~gi~~L~~~l~-gk~~~~~G~sgvGKStlin~l~~~~~-~~~g--~v~~--~--~-~~G~htT~~~~~~~~~~~~~~~ 221 (298)
T PRK00098 151 EGEGLDELKPLLA-GKVTVLAGQSGVGKSTLLNALAPDLE-LKTG--EISE--A--L-GRGKHTTTHVELYDLPGGGLLI 221 (298)
T ss_pred CCccHHHHHhhcc-CceEEEECCCCCCHHHHHHHHhCCcC-CCCc--ceec--c--C-CCCCcccccEEEEEcCCCcEEE
Confidence 3455677877776 55 44555555567778888874432 1111 1100 0 0 0113677766665554
Q ss_pred ------CccccccCHHHHHHHHHc-CceeeEEEEcC-ccccccHHHHHHHHhcCCe
Q psy4417 320 ------GQNYWFTSREVMERDIQD-HKFLEYGEHNG-HLYGTHLDSIREVILSGKI 367 (440)
Q Consensus 320 ------g~~y~f~s~~~f~~~~~~-~~fle~~~~~~-~~yGt~~~~i~~~~~~~~~ 367 (440)
+.+|++++.+++.+.... .++.++..|.. ..||++--+|+++++.|++
T Consensus 222 DtpG~~~~~~~~~~~~~~~~~f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i 277 (298)
T PRK00098 222 DTPGFSSFGLHDLEAEELEHYFPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEI 277 (298)
T ss_pred ECCCcCccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCC
Confidence 677889999888877655 56667777776 5689988899999999974
No 144
>KOG4792|consensus
Probab=85.32 E-value=0.9 Score=42.49 Aligned_cols=56 Identities=23% Similarity=0.463 Sum_probs=41.7
Q ss_pred ccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhH
Q psy4417 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQEL 159 (440)
Q Consensus 96 ~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~ 159 (440)
.+.|.|+.++-.|..=+ .-.|.+..|||+.|+.+.-.+-|.+.+ +++.|.+|..++
T Consensus 226 lPa~Arv~q~RVPnAYD-----kTaL~levGdiVkVTk~ninGqwegEl---nGk~G~fPfThv 281 (293)
T KOG4792|consen 226 LPAYARVIQKRVPNAYD-----KTALALEVGDIVKVTKKNINGQWEGEL---NGKIGHFPFTHV 281 (293)
T ss_pred CChheeeehhcCCCccC-----hhhhhhhcCcEEEEEeeccCceeeeee---cCccccccceeE
Confidence 34555665555442111 127999999999999998889999999 688999998776
No 145
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=85.02 E-value=2.6 Score=38.83 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCccEEEEcC-CHHHHHHHHHHHHHh
Q psy4417 375 VEEDIKRTLEESACLQRSYERFIDKVIVNE-DFDETFRTVIELLDT 419 (440)
Q Consensus 375 s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd-dl~~a~~~l~~~i~~ 419 (440)
+.+++.+|+.. +.-........|++|.|+ ++++...++..++..
T Consensus 149 s~e~~~~ri~~-Q~~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 149 SEEEAEAIIAS-QMPREEKLARADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred CHHHHHHHHHH-hCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 56677777764 222223345679999997 799999999988764
No 146
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=84.92 E-value=1.1 Score=42.98 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCccEEEEcC---CHHHHHHHHHHHHHhcc
Q psy4417 375 VEEDIKRTLEESACLQRSYERFIDKVIVNE---DFDETFRTVIELLDTLS 421 (440)
Q Consensus 375 s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd---dl~~a~~~l~~~i~~~~ 421 (440)
+.+++++|++. +.-........|+||.|+ |+++...++..++..+.
T Consensus 161 s~eea~~Ri~~-Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~~ 209 (244)
T PTZ00451 161 SKEEALQRIGS-QMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWMS 209 (244)
T ss_pred CHHHHHHHHHh-CCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 67788888865 222334556899999998 89999999999987653
No 147
>KOG3725|consensus
Probab=80.76 E-value=1.3 Score=42.08 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=45.8
Q ss_pred ccccccccccCCCCCCCCCCCccccceeccCCEEEEee--cCCCCceEEEecCCCCCCccccchhHH
Q psy4417 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILN--QKDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 96 ~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~--~~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
.....|.+|||++.... +|++...||+.|-. .-|.+|-.+.+ ++..|-+|-.|+.
T Consensus 316 gtrkArVlyDYdAa~s~-------ElslladeiitVyslpGMD~dwlmgEr---GnkkGKvPvtYlE 372 (375)
T KOG3725|consen 316 GTRKARVLYDYDAALSQ-------ELSLLADEIITVYSLPGMDADWLMGER---GNKKGKVPVTYLE 372 (375)
T ss_pred cccceeeeecccccchh-------hhhhhhcceEEEEecCCCChHHhhhhh---cCCCCCcchhHHH
Confidence 34567899999998777 99999999999977 56999998887 5678999988764
No 148
>KOG4773|consensus
Probab=80.49 E-value=0.6 Score=46.27 Aligned_cols=52 Identities=17% Similarity=0.401 Sum_probs=44.0
Q ss_pred ccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 100 vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
-+++++|...... +|.|.+||+..++..++.+||.+.. .+.+|++|-.+..+
T Consensus 178 ~~a~~df~gns~~-------EL~l~agdV~~~~~r~ek~W~~gk~---R~~~g~yp~sF~~~ 229 (386)
T KOG4773|consen 178 AEASFDFPGNSKL-------ELNLVAGDVEFLLSRDEKYWLLGKV---RGLTGYYPDSFVKQ 229 (386)
T ss_pred HHhhccCCCCccc-------eeeeehhhHHHHHhhcccceeeeee---ccccccccHHhhhh
Confidence 4577888887766 9999999999999999999999876 36799999887765
No 149
>KOG3775|consensus
Probab=80.31 E-value=1 Score=45.10 Aligned_cols=56 Identities=23% Similarity=0.465 Sum_probs=48.5
Q ss_pred ccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 98 CYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 98 ~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
.-.|+++.+-|...+ +|-+.-||-++|....|+.|..+.... .++.|++|+.|..+
T Consensus 263 ~THR~~~rFvPRHpD-------ELeLEIgDav~Ve~eadD~W~~G~NlR-TG~~GIFPA~ya~e 318 (482)
T KOG3775|consen 263 QTHRAVFRFVPRHPD-------ELELEIGDAVLVEAEADDFWFEGFNLR-TGERGIFPAFYAHE 318 (482)
T ss_pred hhhhhhhhccCCCcc-------eeeeecCCeeEeeecccchhhcccccc-ccccccccceeEEe
Confidence 347899999998877 899999999999999999999887764 58999999998865
No 150
>KOG3834|consensus
Probab=78.92 E-value=3.1 Score=42.56 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=51.4
Q ss_pred EEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC-CCHHHHHHHHHhcCCceeeeeccCC
Q psy4417 22 TVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV-SSPEDLQIEVVKSDGNIQFTIAPQG 87 (440)
Q Consensus 22 ti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v-~t~~e~~~~L~~~~~~v~l~v~p~~ 87 (440)
-+.++...+..|-+|..+++|.++|..---|-|++|||..+ ...+.+.+.|+...+.|++++.-..
T Consensus 8 ~~p~ggteg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~dnd~Lk~llk~~sekVkltv~n~k 74 (462)
T KOG3834|consen 8 HIPGGGTEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKDNDTLKALLKANSEKVKLTVYNSK 74 (462)
T ss_pred ccccCCceeEEEEEeecCChHHhcCcchhhhhhheeCcccccCchHHHHHHHHhcccceEEEEEecc
Confidence 34444445577888999999999998888899999999999 6667777777765555888886543
No 151
>KOG4371|consensus
Probab=78.73 E-value=2.8 Score=47.25 Aligned_cols=76 Identities=24% Similarity=0.446 Sum_probs=58.2
Q ss_pred EEEeeCCCCccEEEEecCC-CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceeeeecc
Q psy4417 10 KILGTGLSPCGLTVEQDAN-GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQFTIAP 85 (440)
Q Consensus 10 v~l~r~g~~lGiti~~~~~-~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l~v~p 85 (440)
..++++..++|+++..... +++|+..+...+.|...|++++||.++..+|+++ .++.+....++-..+.+.+.+..
T Consensus 1250 ~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1250 MLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTR 1328 (1332)
T ss_pred eeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehh
Confidence 4455667799999876544 7799999999999999999999999999999999 45555555555556666666543
No 152
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=78.21 E-value=1.6 Score=34.68 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=28.2
Q ss_pred ccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 119 IGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 119 ~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
.+|+++.|++|.|++..+.+=|-.|.. .+.-|+||..++.+
T Consensus 31 kDLpi~~GE~LeVI~~t~~~kvlCRN~--~GKYGYV~~~~L~~ 71 (89)
T PF14603_consen 31 KDLPIKPGEILEVIQFTDDNKVLCRNS--EGKYGYVLRSHLLP 71 (89)
T ss_dssp TB----TT-B-EEEEESSSSEEEEEET--TTEEEEEEGGGS--
T ss_pred ccCCcCCCCEEEEEEeCCCCeEEEeCC--CCceeEEEHHHccC
Confidence 389999999999999888888888864 57899999988754
No 153
>PLN02422 dephospho-CoA kinase
Probab=76.36 E-value=3.2 Score=39.59 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCccEEEEcC-CHHHHHHHHHHHHHhccCCCee
Q psy4417 375 VEEDIKRTLEESACLQRSYERFIDKVIVNE-DFDETFRTVIELLDTLSNKHQV 426 (440)
Q Consensus 375 s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd-dl~~a~~~l~~~i~~~~~~~~w 426 (440)
+.+++.+|++.-... .......|++|.|+ ++++...++..++.....+..|
T Consensus 150 s~eea~~Ri~~Q~~~-eek~~~AD~VI~N~gs~e~L~~qv~~ll~~l~~~~~~ 201 (232)
T PLN02422 150 SEEQARNRINAQMPL-DWKRSKADIVIDNSGSLEDLKQQFQKVLEKIRAPLTW 201 (232)
T ss_pred CHHHHHHHHHHcCCh-hHHHhhCCEEEECCCCHHHHHHHHHHHHHHHhcchHH
Confidence 567777777542111 12345789999997 7999999999999888765555
No 154
>KOG2528|consensus
Probab=75.51 E-value=1.4 Score=45.16 Aligned_cols=57 Identities=23% Similarity=0.472 Sum_probs=45.5
Q ss_pred ccccccccCCCCCCCCCCCccccceeccCCEEEEeecC-CCCceEEEecCCCCCCccccchhHHHhh
Q psy4417 98 CYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPSQELEERR 163 (440)
Q Consensus 98 ~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~-d~~ww~a~~~~~~~~~G~iPs~~~~~rr 163 (440)
.+.|++||+.....+ +++...||++.+++.. -.+||+++.. .+..|++|..|++=-+
T Consensus 3 sk~RamyDf~~E~~s-------Elsi~~~evl~i~~e~~~~GwLeg~Ns--rge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 3 SKARAMYDFQSEGHS-------ELSIWEGEVLSITSEDVIEGWLEGSNS--RGERGLFPASYVEVTR 60 (490)
T ss_pred cchhhhcchhhcccc-------cccccccceeeecCcccccccccCCCc--cCccCCCcccceeeec
Confidence 357889988877544 8999999999999954 6779988764 4789999999987544
No 155
>PRK05480 uridine/cytidine kinase; Provisional
Probab=75.43 E-value=3.7 Score=38.01 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=16.6
Q ss_pred hcccCCCccccccccccccccc
Q psy4417 164 KAFVPPEADYVHKIGICGTRYI 185 (440)
Q Consensus 164 ~~~~~~~~~~~gk~~~~~~~~~ 185 (440)
..+-+.|++++||+|++..+..
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999998876543
No 156
>PRK06762 hypothetical protein; Provisional
Probab=75.13 E-value=5.3 Score=35.34 Aligned_cols=20 Identities=10% Similarity=-0.107 Sum_probs=15.5
Q ss_pred cccCCCcccccccccccccc
Q psy4417 165 AFVPPEADYVHKIGICGTRY 184 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~ 184 (440)
.+.+.|++++||+++...+.
T Consensus 4 li~i~G~~GsGKST~A~~L~ 23 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQ 23 (166)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34567999999999887654
No 157
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=74.80 E-value=6.3 Score=36.44 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCccEEEEcC-CHHHHHHHHHHHHHhc
Q psy4417 375 VEEDIKRTLEESACLQRSYERFIDKVIVNE-DFDETFRTVIELLDTL 420 (440)
Q Consensus 375 s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd-dl~~a~~~l~~~i~~~ 420 (440)
+.+++.+|+.. +.-........|++|.|+ ++++...++..++...
T Consensus 146 s~e~a~~ri~~-Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~ 191 (196)
T PRK14732 146 KKEDVLARIAS-QLPITEKLKRADYIVRNDGNREGLKEECKILYSTL 191 (196)
T ss_pred CHHHHHHHHHH-cCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 56777777765 222334455799999997 6999999999887654
No 158
>KOG2996|consensus
Probab=72.03 E-value=2.9 Score=44.27 Aligned_cols=41 Identities=24% Similarity=0.618 Sum_probs=34.0
Q ss_pred ccceeccCCEEEEee-cCCCCceEEEecCCCCCCccccchhHH
Q psy4417 119 IGLAFNHGDILQILN-QKDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 119 ~~L~f~~GdIl~V~~-~~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
+-|.++.||+|..+. .....||++|..+. +..|.+||+.+.
T Consensus 625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~s-r~sg~fpss~vk 666 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDAESSWWEGRNHGS-RESGNFPSSTVK 666 (865)
T ss_pred CceEecCCceeehhcCCCCCcccccCCccC-CccCCCCccccC
Confidence 368999999999987 44778999998763 679999998775
No 159
>KOG4407|consensus
Probab=71.33 E-value=5 Score=46.42 Aligned_cols=56 Identities=13% Similarity=0.034 Sum_probs=45.4
Q ss_pred CCeEEEEeeCCCCccEEEEec-----CC----------------------CcEEEEEEcCCChhhhcCCCCCCCEEEeEC
Q psy4417 6 HPLKKILGTGLSPCGLTVEQD-----AN----------------------GNLIIARILAGSLIDKQGVLKVGDVILGVN 58 (440)
Q Consensus 6 ~~r~v~l~r~g~~lGiti~~~-----~~----------------------~~i~V~~V~~gs~A~~~G~L~~GD~Il~VN 58 (440)
.+..|+.+|..+++||++.-- ++ ..+++.++..++++..+| +..||.|..||
T Consensus 46 ~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~it 124 (1973)
T KOG4407|consen 46 PKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGIT 124 (1973)
T ss_pred CceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeec
Confidence 345788999999999998631 10 114788899999999999 99999999999
Q ss_pred CccC
Q psy4417 59 GENV 62 (440)
Q Consensus 59 g~~v 62 (440)
|..+
T Consensus 125 G~e~ 128 (1973)
T KOG4407|consen 125 GLEP 128 (1973)
T ss_pred cccc
Confidence 9876
No 160
>KOG0199|consensus
Probab=69.97 E-value=4.2 Score=44.53 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=39.3
Q ss_pred ccccccCCCCCCCCCCCccccceeccCCEEEEeec-CCCCceEEEecCCCCCCccccchhHH
Q psy4417 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ-KDPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 100 vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~-~d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
++|..+|+..+.+ .|.|++||.+.|++. ....||.++.. ++...|.+|.+.+.
T Consensus 377 ~~a~~~~d~~ep~-------aLh~~kgD~IvVIegs~a~y~WfgQn~-Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 377 AVARETYDSIEPG-------ALHLTKGDEIVVIEGSGAGYDWFGQNK-RNQKVGTFPRSVVT 430 (1039)
T ss_pred ceeeeeccccCCC-------ceeeccCCeEEEEecCCccceeecccc-ccceecccCcceee
Confidence 3445555555544 899999999999984 45789998663 35789999987765
No 161
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=69.25 E-value=5.4 Score=30.86 Aligned_cols=26 Identities=31% Similarity=0.768 Sum_probs=21.8
Q ss_pred cceeccCCEEEEeec------CCCCceEEEec
Q psy4417 120 GLAFNHGDILQILNQ------KDPNWWQAQLI 145 (440)
Q Consensus 120 ~L~f~~GdIl~V~~~------~d~~ww~a~~~ 145 (440)
=|+++.||.+.|-+. .+.+||.+..+
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi 34 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQVI 34 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEEE
Confidence 478899999999774 37899999987
No 162
>KOG4429|consensus
Probab=67.49 E-value=6 Score=38.45 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=44.1
Q ss_pred cccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 99 ~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
...++|++....|+ +|....|||..+......+||..+.. +..|-+|..+..+
T Consensus 365 lcdafYSfqarqdd-------el~~e~gditif~Ekkeeg~~f~rl~---gd~~hf~Aa~iEe 417 (421)
T KOG4429|consen 365 LCDAFYSFQARQDD-------ELGGEIGDITIFDEKKEEGPTFCRLL---GDFEHFHAAEIEE 417 (421)
T ss_pred Hhhhhhcccccccc-------ccCCcccceeeecCcccCCCceeeec---cccCCCcHHHHHH
Confidence 45688999998888 89999999999988889999999995 5577777776654
No 163
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=66.35 E-value=4.2 Score=40.31 Aligned_cols=101 Identities=11% Similarity=-0.024 Sum_probs=59.3
Q ss_pred cccCCCcccccccccccccccccccccccccccC-cccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEc
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLM-SRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHN 243 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~ 243 (440)
.+++.||+++||+.+.-.+.++ ...+..-+.+- =.-.+-.|-+|.+.|..+..+|+++--+..+.- .-
T Consensus 6 ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~----------sv 74 (300)
T PRK14729 6 IVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEY----------NL 74 (300)
T ss_pred EEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCce----------eH
Confidence 5677899999998765444333 22221000000 034666788888888999998876432221111 11
Q ss_pred CCccccchhhHHHHHhcCCeEEeecCcch--hhhhh
Q psy4417 244 GHLYGTHLDSIREVILSGKICVLDCSPVG--LFTFL 277 (440)
Q Consensus 244 g~~yg~~~~~i~~v~~~g~~~il~~~~~g--~~~l~ 277 (440)
+.+.-.-.+.|+++.+.|+++|| ++..| ++.|+
T Consensus 75 ~~f~~~a~~~i~~i~~~gk~Pil-vGGTglYi~all 109 (300)
T PRK14729 75 GIFYKEALKIIKELRQQKKIPIF-VGGSAFYFKHLK 109 (300)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEE-EeCchHHHHHHH
Confidence 23333456788888889998877 56667 35553
No 164
>PLN02748 tRNA dimethylallyltransferase
Probab=66.22 E-value=5.1 Score=42.24 Aligned_cols=100 Identities=10% Similarity=0.025 Sum_probs=61.0
Q ss_pred hhhcccCCCccccccccccccccccccccc-------ccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcC
Q psy4417 162 RRKAFVPPEADYVHKIGICGTRYIKQYNTL-------QYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDH 234 (440)
Q Consensus 162 rr~~~~~~~~~~~gk~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~ 234 (440)
....+++.||+++||.++.-.+..+....+ .| .-.+-.|-+|-+.|..|..+|+++--......
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVY------rgLdIgTaKpt~eE~~~VpHHLid~v~p~e~y--- 91 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVY------SGLDVLTNKVPLHEQKGVPHHLLGVISPSVEF--- 91 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheee------CCcchhcCCCCHHHHcCCCCeeEeecCCCCcC---
Confidence 344577889999999987654433322111 22 35667788888889999998875332111100
Q ss_pred CeeEEEEEcCCccccchhhHHHHHhcCCeEEeecCcch--hhhhhh
Q psy4417 235 KFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVG--LFTFLL 278 (440)
Q Consensus 235 ~fle~~~~~g~~yg~~~~~i~~v~~~g~~~il~~~~~g--~~~l~~ 278 (440)
.-+.+.---...|+++.++|++.|| ++..| ++.|+.
T Consensus 92 -------sv~~F~~~A~~~I~~I~~rgk~PIl-VGGTglYi~aLl~ 129 (468)
T PLN02748 92 -------TAKDFRDHAVPLIEEILSRNGLPVI-VGGTNYYIQALVS 129 (468)
T ss_pred -------cHHHHHHHHHHHHHHHHhcCCCeEE-EcChHHHHHHHHc
Confidence 0122233346788899999998888 56666 455543
No 165
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=65.47 E-value=8.8 Score=35.71 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCccEEEEcC-CHHHHHHHHHHHHHhc
Q psy4417 375 VEEDIKRTLEESACLQRSYERFIDKVIVNE-DFDETFRTVIELLDTL 420 (440)
Q Consensus 375 s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd-dl~~a~~~l~~~i~~~ 420 (440)
+.+++++|++.....+ .....+|++|.|+ ++++...++..++...
T Consensus 158 s~e~~~~Ri~~q~~~~-~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~ 203 (208)
T PRK14731 158 SREEIRRRIAAQWPQE-KLIERADYVIYNNGTLDELKAQTEQLYQVL 203 (208)
T ss_pred CHHHHHHHHHHcCChH-HHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 5678888876532211 2223589999985 6999999999988754
No 166
>PLN02840 tRNA dimethylallyltransferase
Probab=64.80 E-value=7.9 Score=40.18 Aligned_cols=54 Identities=6% Similarity=0.074 Sum_probs=38.6
Q ss_pred ecCCCcccchhhccCccccccCHHHHHHHHHcCceeeEEEEc-CccccccHHHHHHHHhcCCeeEe
Q psy4417 306 ASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHN-GHLYGTHLDSIREVILSGKICVL 370 (440)
Q Consensus 306 ~~~ttr~~~~~e~~g~~y~f~s~~~f~~~~~~~~fle~~~~~-~~~yGt~~~~i~~~~~~~~~~i~ 370 (440)
.+-+|.++...|.+++.|||++--.... +|+ +.++..-.+.|+++.++|+++|+
T Consensus 61 ~~IgTaKpt~eE~~~V~Hhlidil~p~e-----------~ySv~~F~~~A~~~I~~i~~rgkiPIv 115 (421)
T PLN02840 61 LDVGSAKPSLSERKEVPHHLIDILHPSD-----------DYSVGAFFDDARRATQDILNRGRVPIV 115 (421)
T ss_pred eeEEcCCCCHHHHcCCCeEeEeecCCCC-----------ceeHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 3457777888899999999886543221 122 34556667899999999998765
No 167
>KOG1421|consensus
Probab=64.54 E-value=16 Score=39.89 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=57.9
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhcCCceeeeeccCCCCCCCCCCccccccccccCCC
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQGDDASLPIKPVCYMRCLFTYDP 108 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~~~~v~l~v~p~~~~~~~~~~~~~~vRal~dy~p 108 (440)
.++||...-.||||.+ + |..-.-|..|||+.+.+.+++..+|+...+..-+.+.-..-+..+ ....+|..+-|.|
T Consensus 862 ~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~~lddf~~~~~~ipdnsyv~v~~mtfd~vp---~~~s~k~n~hyfp 936 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTNTLDDFYHMLLEIPDNSYVQVKQMTFDGVP---SIVSVKPNPHYFP 936 (955)
T ss_pred CceEEeecccCChhHh-h-cchheeEEEecccccCcHHHHHHHHhhCCCCceEEEEEeccCCCc---eEEEeccCCccCc
Confidence 4579999999999988 7 999999999999999999999999998766655555433322221 2356777777777
Q ss_pred C
Q psy4417 109 K 109 (440)
Q Consensus 109 ~ 109 (440)
.
T Consensus 937 t 937 (955)
T KOG1421|consen 937 T 937 (955)
T ss_pred e
Confidence 4
No 168
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=64.16 E-value=11 Score=34.47 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=32.4
Q ss_pred CccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeEC
Q psy4417 18 PCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVN 58 (440)
Q Consensus 18 ~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VN 58 (440)
..|+++.. +++.+.|..|..||+|+++| +.-|.+|.+|-
T Consensus 112 ~~GL~l~~-e~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 112 AAGLTLME-EGGKVIVDEVEFGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred hCCCEEEe-eCCEEEEEecCCCCHHHHcC-CCCCcEEEEEE
Confidence 34777765 45779999999999999999 99999888764
No 169
>KOG4371|consensus
Probab=63.92 E-value=6.9 Score=44.32 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=55.9
Q ss_pred EEEEeeCCCCccEEEEecCCCcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceeeeeccC
Q psy4417 9 KKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQFTIAPQ 86 (440)
Q Consensus 9 ~v~l~r~g~~lGiti~~~~~~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l~v~p~ 86 (440)
.+++-|+...||..+.. -.+.+-+....-.+.-.+-. |..||.++-+||+.+ .-+.+++.+++..++.+.|.|...
T Consensus 1150 ~~~~~r~~~~l~~~~a~-~~~~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 1227 (1332)
T KOG4371|consen 1150 DVELDRNEGSLGVQIAS-LSGRVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRP 1227 (1332)
T ss_pred cccCCCCCCCCCceecc-CccceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecC
Confidence 44555777788888765 23456666665555555545 999999999999887 667888888988888888888653
No 170
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=63.41 E-value=14 Score=37.36 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=41.6
Q ss_pred EEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHHhc-CCc---eeeeecc
Q psy4417 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS-DGN---IQFTIAP 85 (440)
Q Consensus 32 ~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~~~-~~~---v~l~v~p 85 (440)
.+..+..+++|..+| ++.||.++++|+..+.+.+++...+... +.. +.+.+.+
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCHHHHHHHHHhccCCcccceEEEEEe
Confidence 344688999999999 9999999999999998888888777643 333 4555544
No 171
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=62.62 E-value=19 Score=33.32 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCccEEEEcC-CHHHHHHHHHHHHHhcc
Q psy4417 375 VEEDIKRTLEESACLQRSYERFIDKVIVNE-DFDETFRTVIELLDTLS 421 (440)
Q Consensus 375 s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd-dl~~a~~~l~~~i~~~~ 421 (440)
+.+++.+|++.-...+ ......|++|.|+ +++..+.++..++..+.
T Consensus 150 s~e~~~~ri~~Q~~~~-~k~~~ad~vI~N~g~~e~l~~~v~~~~~~~~ 196 (200)
T PRK14734 150 DEDDARRRIAAQIPDD-VRLKAADIVVDNNGTREQLLAQVDGLIAEIL 196 (200)
T ss_pred CHHHHHHHHHhcCCHH-HHHHhCCEEEECcCCHHHHHHHHHHHHHHHH
Confidence 5667777776421111 1224678999886 69999999998887654
No 172
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=62.59 E-value=8.7 Score=28.04 Aligned_cols=24 Identities=25% Similarity=0.893 Sum_probs=21.5
Q ss_pred eeccCCEEEEeecCCCCceEEEec
Q psy4417 122 AFNHGDILQILNQKDPNWWQAQLI 145 (440)
Q Consensus 122 ~f~~GdIl~V~~~~d~~ww~a~~~ 145 (440)
.|+.||.+.+....++.||.|..+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEE
Confidence 478999999998889999999886
No 173
>KOG4407|consensus
Probab=60.54 E-value=5.5 Score=46.13 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccC--CCHHHHHHHHHhcCCceeeeeccCCC
Q psy4417 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENV--SSPEDLQIEVVKSDGNIQFTIAPQGD 88 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v--~t~~e~~~~L~~~~~~v~l~v~p~~~ 88 (440)
..+|+..|.+.++|+.+. |+.||.++.||..++ ....+++.++++......+.+.|...
T Consensus 143 eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~~ 203 (1973)
T KOG4407|consen 143 ETIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKEC 203 (1973)
T ss_pred hhhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccccC
Confidence 347999999999999998 999999999999999 67789999999888888888887654
No 174
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=59.89 E-value=6.4 Score=27.92 Aligned_cols=36 Identities=22% Similarity=0.536 Sum_probs=26.7
Q ss_pred eeccCCEEEEeecCCCC-ceEEEecCCCCCCccccchhH
Q psy4417 122 AFNHGDILQILNQKDPN-WWQAQLIEPTGPMGLVPSQEL 159 (440)
Q Consensus 122 ~f~~GdIl~V~~~~d~~-ww~a~~~~~~~~~G~iPs~~~ 159 (440)
.+..|+.+.|++....+ |++.+.. ++..|+|++.++
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~--~g~~GwV~~~~l 54 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTY--DGKTGWVSSSYL 54 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEE--TTEEEEEEGGCE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECc--CCcEEEEEcccc
Confidence 57899999999965444 9888443 355899998764
No 175
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=56.92 E-value=12 Score=27.21 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=27.7
Q ss_pred ceeccCCEEEEeecCCCCceEEEecCCCCCCccccchh
Q psy4417 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158 (440)
Q Consensus 121 L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~ 158 (440)
-.+..|+.+.|++..+.+|.+.+.. ++..|+||...
T Consensus 25 ~~l~~g~~v~i~~~~~~~W~~v~~~--~g~~Gwi~~~~ 60 (63)
T smart00287 25 GTLKKGDKVKVLGVDGQDWAKITYG--SGQRGYVPGYV 60 (63)
T ss_pred EEecCCCEEEEEEccCCceEEEEcC--CCCEEEEEeee
Confidence 3577999999998765589988753 37799998654
No 176
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=53.08 E-value=20 Score=32.49 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCccEEEEcC-CHHHHHHHHH
Q psy4417 375 VEEDIKRTLEESACLQRSYERFIDKVIVNE-DFDETFRTVI 414 (440)
Q Consensus 375 s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd-dl~~a~~~l~ 414 (440)
+.+++.+|+..... ........|++|.|+ ++++...++.
T Consensus 148 s~~~~~~r~~~q~~-~~~~~~~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 148 TEEEVQKRLASQMD-IEERLARADDVIDNSATLADLVKQLE 187 (188)
T ss_pred CHHHHHHHHHhcCC-HHHHHHhCCEEEECCCCHHHHHHHHh
Confidence 56777777775321 223345799999997 5877777664
No 177
>KOG3834|consensus
Probab=52.40 E-value=55 Score=33.87 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=53.7
Q ss_pred CCCeEEEEeeC----CCCccEEEEecCC-----CcEEEEEEcCCChhhhcCCCCCCCEEEeECCccCCCHHHHHHHHH-h
Q psy4417 5 PHPLKKILGTG----LSPCGLTVEQDAN-----GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVV-K 74 (440)
Q Consensus 5 ~~~r~v~l~r~----g~~lGiti~~~~~-----~~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~t~~e~~~~L~-~ 74 (440)
.+.|.+.+... |+-||++|.=... ..+.|-+|.+.+||+++|...-+|-|+.+-.......+++..+|. +
T Consensus 76 ~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~~eDl~~lIesh 155 (462)
T KOG3834|consen 76 QEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHEEEDLFTLIESH 155 (462)
T ss_pred ceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhccchHHHHHHHHhc
Confidence 34566666643 2337888874322 226788999999999999555899998773334455566666665 6
Q ss_pred cCCceeeeeccC
Q psy4417 75 SDGNIQFTIAPQ 86 (440)
Q Consensus 75 ~~~~v~l~v~p~ 86 (440)
.++.+.+.|.-.
T Consensus 156 e~kpLklyVYN~ 167 (462)
T KOG3834|consen 156 EGKPLKLYVYNH 167 (462)
T ss_pred cCCCcceeEeec
Confidence 677777766543
No 178
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=52.18 E-value=11 Score=37.52 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=51.8
Q ss_pred cccCCCcccccccccccccccccccccccccccC-cccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEc
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLM-SRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHN 243 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~ 243 (440)
++++.||+.+||+.+.-.+.++....+...+.+- -.-...-|-+|...|..|..+|.+.--+..+... .
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ys----------a 74 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYS----------A 74 (308)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCcccccc----------H
Confidence 5667899999998765444333222221111000 0234445666777788888877642110000000 0
Q ss_pred CCccccchhhHHHHHhcCCeEEeecCcch
Q psy4417 244 GHLYGTHLDSIREVILSGKICVLDCSPVG 272 (440)
Q Consensus 244 g~~yg~~~~~i~~v~~~g~~~il~~~~~g 272 (440)
+.++-.-...|.++..+||+.|| ++..|
T Consensus 75 ~~f~~~a~~~i~~i~~rgk~pIl-VGGTg 102 (308)
T COG0324 75 AEFQRDALAAIDDILARGKLPIL-VGGTG 102 (308)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEE-EccHH
Confidence 11122235788999999998888 45555
No 179
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=47.57 E-value=38 Score=30.25 Aligned_cols=63 Identities=10% Similarity=-0.065 Sum_probs=39.4
Q ss_pred EcCccccccHHHHHHHHhcCCeeEecCCCc-HHHHHHHHHHHHHHHHHhcCCccEEEEcCCHHHHHHHHH
Q psy4417 346 HNGHLYGTHLDSIREVILSGKICVLDCSPV-EEDIKRTLEESACLQRSYERFIDKVIVNEDFDETFRTVI 414 (440)
Q Consensus 346 ~~~~~yGt~~~~i~~~~~~~~~~i~~~~~s-~e~l~~~l~~~~~~e~~~~~~fd~vi~Nddl~~a~~~l~ 414 (440)
..+..|++..+.++..++.|..+|++.... ...+++.++.. .+..|-.+.+.-+++.+.+++.
T Consensus 66 ~~~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~------~~~~~~~v~l~~~~~~l~~R~~ 129 (175)
T cd00227 66 EFRLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSF------VGLDVLWVGVRCPGEVAEGRET 129 (175)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHh------cCCCEEEEEEECCHHHHHHHHH
Confidence 345789999999999999999998886543 34443322221 1223444555666666666655
No 180
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=45.22 E-value=30 Score=31.26 Aligned_cols=19 Identities=5% Similarity=-0.184 Sum_probs=14.9
Q ss_pred ccCCCcccccccccccccc
Q psy4417 166 FVPPEADYVHKIGICGTRY 184 (440)
Q Consensus 166 ~~~~~~~~~gk~~~~~~~~ 184 (440)
+.++|++|+||+|+.+.+-
T Consensus 3 ItIsG~pGsG~TTva~~lA 21 (179)
T COG1102 3 ITISGLPGSGKTTVARELA 21 (179)
T ss_pred EEeccCCCCChhHHHHHHH
Confidence 4568999999999876543
No 181
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.96 E-value=25 Score=32.84 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=30.6
Q ss_pred eeccCCEEEEeecC-CCCceEEEecCCCCCCccccchhHHH
Q psy4417 122 AFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 122 ~f~~GdIl~V~~~~-d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
++..|+.+.|++.. +.+|.+.+.. ++..|+|++.++..
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~--~G~~GWV~~~~Ls~ 87 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDS--KGRTAWIPLKQLST 87 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeC--CCCEEeEEHHHhcC
Confidence 57899999999865 4788888763 46789999999864
No 182
>KOG1384|consensus
Probab=44.36 E-value=9.4 Score=38.13 Aligned_cols=103 Identities=15% Similarity=0.070 Sum_probs=53.7
Q ss_pred hcccCCCcccccccccccccccccccccccccccC-cccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEE
Q psy4417 164 KAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLM-SRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEH 242 (440)
Q Consensus 164 ~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~ 242 (440)
+..++.|++|+||.-+.=.+..+....+.-.+.+- -.-+..+|-++-..|..|++.|.+..-..+... .
T Consensus 8 KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~----------t 77 (348)
T KOG1384|consen 8 KVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEY----------T 77 (348)
T ss_pred eEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhc----------c
Confidence 35567899999987543222222221111000000 034566677776777778776653222111111 1
Q ss_pred cCCccccchhhHHHHHhcCCeEEe-ecCcchhhhh
Q psy4417 243 NGHLYGTHLDSIREVILSGKICVL-DCSPVGLFTF 276 (440)
Q Consensus 243 ~g~~yg~~~~~i~~v~~~g~~~il-~~~~~g~~~l 276 (440)
.+.++-....+|+++.++|++.|+ +.++..++.|
T Consensus 78 ~~~F~~~a~~aie~I~~rgk~PIv~GGs~~yi~al 112 (348)
T KOG1384|consen 78 AGEFEDDASRAIEEIHSRGKLPIVVGGSNSYLQAL 112 (348)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEeCCchhhHHHH
Confidence 123344456899999999996665 3334445555
No 183
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=42.16 E-value=1.3e+02 Score=27.39 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=16.8
Q ss_pred EEcCCHHHHHHHHHHHHHh
Q psy4417 401 IVNEDFDETFRTVIELLDT 419 (440)
Q Consensus 401 i~Nddl~~a~~~l~~~i~~ 419 (440)
+.|.+.+++.+++..+|..
T Consensus 138 tt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 138 TTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred CCCCCHHHHHHHHHHHHcc
Confidence 4588999999999999984
No 184
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=37.46 E-value=46 Score=30.60 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCccEEEEcC-CHHHHHHHHHHHHH
Q psy4417 375 VEEDIKRTLEESACLQRSYERFIDKVIVNE-DFDETFRTVIELLD 418 (440)
Q Consensus 375 s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd-dl~~a~~~l~~~i~ 418 (440)
+.+++.+|+..... ........|+||.|+ ++++...++..++.
T Consensus 150 s~e~~~~ri~~Q~~-~~~k~~~aD~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 150 TEEEAEARINAQWP-LEEKVKLADVVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred CHHHHHHHHHhCCC-HHHHHhhCCEEEECCCCHHHHHHHHHHHHh
Confidence 55666666654211 122335789999986 69999999988764
No 185
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=37.09 E-value=43 Score=31.20 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCccEEEEcC--CHHHHHHHHHHHHHhc
Q psy4417 375 VEEDIKRTLEESACLQRSYERFIDKVIVNE--DFDETFRTVIELLDTL 420 (440)
Q Consensus 375 s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd--dl~~a~~~l~~~i~~~ 420 (440)
+.+++.+|+.. +--..+.....|+||.|+ |+++...++..+++..
T Consensus 153 s~~~a~~ri~~-Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 153 NRQQAVAFINL-QISDKEREKIADFVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred CHHHHHHHHHh-CCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHH
Confidence 56777777753 111223334789999985 5799999999888765
No 186
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=35.21 E-value=40 Score=23.92 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=27.3
Q ss_pred ceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhH
Q psy4417 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQEL 159 (440)
Q Consensus 121 L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~ 159 (440)
..+..|.++.|+. ...+|.+.+. ++..|+|+...+
T Consensus 19 ~~l~~g~~v~v~~-~~~~W~~V~~---~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIE-CRGGWCKVRA---DGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEE-ccCCeEEEEE---CCeEEeEEeeec
Confidence 4577899999994 5778999983 477999987654
No 187
>KOG0744|consensus
Probab=34.82 E-value=26 Score=35.19 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=39.9
Q ss_pred EcCCccccchhhHHHHHhcCCeEEeecCcchhhhhhhhhccccccccCCCceE
Q psy4417 242 HNGHLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTY 294 (440)
Q Consensus 242 ~~g~~yg~~~~~i~~v~~~g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i 294 (440)
..|++-..-++.|++.......|.-.-+|+..-++.++|+++--.-+-+|.++
T Consensus 247 d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred CCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 36777778889999998888888888889987777788887643333466655
No 188
>KOG3565|consensus
Probab=33.68 E-value=18 Score=39.67 Aligned_cols=57 Identities=25% Similarity=0.699 Sum_probs=44.1
Q ss_pred ccccccccccCCCCCCCCCCCccccceeccCCEEEEeecC-CCCceEEEecCCCCCCccccchhHH
Q psy4417 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPSQELE 160 (440)
Q Consensus 96 ~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~-d~~ww~a~~~~~~~~~G~iPs~~~~ 160 (440)
+...+.|+|.|.+..+. .++...|+|+.|+... ..+|=..+ ...++..|.+|..|+.
T Consensus 577 ~~~~~~a~~~~~~~s~~-------~~si~~~~il~~ie~~~g~gwt~~r-~~~~~~~g~~Ptsyl~ 634 (640)
T KOG3565|consen 577 PIRTSKALYAFEGQSEG-------TISIDPGEILQVIEEDKGDGWTRGR-LEPNGEKGYVPTSYLD 634 (640)
T ss_pred CccceecccCcCCCCCC-------ccccCcchhHHHHhhcccCCCCCCC-CCCCCcCCCCCccccc
Confidence 45567788999998887 8889999999999855 45565555 3346889999998874
No 189
>PRK06761 hypothetical protein; Provisional
Probab=33.58 E-value=23 Score=34.78 Aligned_cols=82 Identities=9% Similarity=-0.054 Sum_probs=48.8
Q ss_pred cccCCCcccccccccccccccccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEcC
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNG 244 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~g 244 (440)
.+++.|++++||+|+...+..+....... ..+-+.-..+++.+..+..+ .+.++|...+.+...+.
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~g~~------v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~~~~f~------ 70 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQNGIE------VELYLEGNLDHPADYDGVAC--FTKEEFDRLLSNYPDFK------ 70 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcCceE------EEEEecCCCCCchhhccccC--CCHHHHHHHHHhhhHHH------
Confidence 46678999999999887665432221110 11111122346666767555 59999999887644321
Q ss_pred CccccchhhHHHHHhcCCeEEe
Q psy4417 245 HLYGTHLDSIREVILSGKICVL 266 (440)
Q Consensus 245 ~~yg~~~~~i~~v~~~g~~~il 266 (440)
..-+++.+..|..+|+
T Consensus 71 ------~~l~~~~~~~g~~~i~ 86 (282)
T PRK06761 71 ------EVLLKNVLKKGDYYLL 86 (282)
T ss_pred ------HHHHHHHHHcCCeEEE
Confidence 3455666677776555
No 190
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=28.86 E-value=1.1e+02 Score=29.74 Aligned_cols=91 Identities=7% Similarity=0.011 Sum_probs=59.9
Q ss_pred ceeeEEEEcCccccccH--------HHHHHHHhcCCeeEecCCCcHHHHHHHHHHHHHHHHHhcCCccEEEEcCCHHHHH
Q psy4417 339 KFLEYGEHNGHLYGTHL--------DSIREVILSGKICVLDCSPVEEDIKRTLEESACLQRSYERFIDKVIVNEDFDETF 410 (440)
Q Consensus 339 ~fle~~~~~~~~yGt~~--------~~i~~~~~~~~~~i~~~~~s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nddl~~a~ 410 (440)
+++++..+-....|+.. +.+++.+.+...++++.|.++..|.+.-+...+.-...+.--+.+-+..|--.+|
T Consensus 40 e~y~~~~f~~~~ig~~f~s~~~~~~~~~ek~le~~Da~LvIAPEdd~lLy~Ltri~E~~~~nLG~S~~Ai~v~aDK~lty 119 (307)
T COG1821 40 EVYETLTFADPSIGVRFKSTADDVLRDEEKALEKADATLVIAPEDDGLLYSLTRIYEEYVENLGCSPRAIRVAADKRLTY 119 (307)
T ss_pred eEEEeecccccccceeeecchhHHHHHHHHHHhcCCeeEEEecCcCChHHHHHHHHHHHhHhhCCCHHHHhHhhhHHHHH
Confidence 45555555555555444 4677778877888888887666655444443333445566677777888888999
Q ss_pred HHHHHHHHhccCCCeeeecc
Q psy4417 411 RTVIELLDTLSNKHQVDSRP 430 (440)
Q Consensus 411 ~~l~~~i~~~~~~~~wvp~~ 430 (440)
..|+..+....+-+ |+|..
T Consensus 120 ~aLr~aV~~p~t~e-~~~~~ 138 (307)
T COG1821 120 KALRDAVKQPPTRE-WAEEP 138 (307)
T ss_pred HHHhhhccCCCccc-cccCC
Confidence 99999976554443 87654
No 191
>KOG0040|consensus
Probab=26.70 E-value=5.7 Score=46.64 Aligned_cols=56 Identities=23% Similarity=0.587 Sum_probs=44.7
Q ss_pred ccccccccccCCCCCCCCCCCccccceeccCCEEEEeecCCCCceEEEecCCCCCCccccchhHHH
Q psy4417 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161 (440)
Q Consensus 96 ~~~~vRal~dy~p~~d~~~p~~e~~L~f~~GdIl~V~~~~d~~ww~a~~~~~~~~~G~iPs~~~~~ 161 (440)
....|-|+|+|...+.. +.+-++||++..++....+||..++. -.-|++|..|+..
T Consensus 967 g~~~v~alyd~q~kSpr-------ev~mKkgDvltll~s~nkdwwkve~~---d~qg~vpa~yvk~ 1022 (2399)
T KOG0040|consen 967 GKECVLALYDYQEKSPR-------EVTMKKGDVLTLLNSINKDWWKVEVN---DRQGFVPAAYVKR 1022 (2399)
T ss_pred HHHHHHHHHHHHhcCHH-------HHHHhhhhHHHHHhhcccccccchhh---hhcCcchHHHHHH
Confidence 34566688999876554 78889999999999999999999984 4478888888753
No 192
>PRK01184 hypothetical protein; Provisional
Probab=26.56 E-value=1.6e+02 Score=26.24 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHH-HHHhcCCccEEEEcC-CHHHHHHHHHHHHHhcc
Q psy4417 375 VEEDIKRTLEESACL-QRSYERFIDKVIVNE-DFDETFRTVIELLDTLS 421 (440)
Q Consensus 375 s~e~l~~~l~~~~~~-e~~~~~~fd~vi~Nd-dl~~a~~~l~~~i~~~~ 421 (440)
+.+++.+|.+..... .......-|++|.|+ ++++.+.+++.++....
T Consensus 132 ~~~~~~~r~~~q~~~~~~~~~~~ad~vI~N~~~~~~l~~~v~~~~~~~~ 180 (184)
T PRK01184 132 SWEELEERDERELSWGIGEVIALADYMIVNDSTLEEFRARVRKLLERIL 180 (184)
T ss_pred hHHHHHHHHHHHhccCHHHHHHhcCEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 466777776543211 112225689999876 69999999999987654
No 193
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=26.53 E-value=3.9e+02 Score=26.67 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=52.9
Q ss_pred CCCccccccccccccccc---ccccccccccccCcccccCCCCCCCCCccCCCcceecCHHHHHHhh-hcCCeeEEEEEc
Q psy4417 168 PPEADYVHKIGICGTRYI---KQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDI-QDHKFLEYGEHN 243 (440)
Q Consensus 168 ~~~~~~~gk~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i-~~~~fle~~~~~ 243 (440)
++|+.++||.++...+.. ....++- ..--+.|.+..-|-.-| .+--|++.- ..|-|+-..-..
T Consensus 56 ITG~PGaGKSTli~~L~~~l~~~G~rVa-------VlAVDPSSp~TGGsiLG------DRiRM~~~~~~~~vFiRs~~sr 122 (323)
T COG1703 56 ITGVPGAGKSTLIEALGRELRERGHRVA-------VLAVDPSSPFTGGSILG------DRIRMQRLAVDPGVFIRSSPSR 122 (323)
T ss_pred ecCCCCCchHHHHHHHHHHHHHCCcEEE-------EEEECCCCCCCCccccc------cHhhHHhhccCCCeEEeecCCC
Confidence 579999999998765432 2222222 12334555555555544 344566654 568898777778
Q ss_pred CCccccchhh---HHHHHhcCCeEEeecCcchh
Q psy4417 244 GHLYGTHLDS---IREVILSGKICVLDCSPVGL 273 (440)
Q Consensus 244 g~~yg~~~~~---i~~v~~~g~~~il~~~~~g~ 273 (440)
|.+=|++... |.-.=+.|...|+ ++..|+
T Consensus 123 G~lGGlS~at~~~i~~ldAaG~DvII-VETVGv 154 (323)
T COG1703 123 GTLGGLSRATREAIKLLDAAGYDVII-VETVGV 154 (323)
T ss_pred ccchhhhHHHHHHHHHHHhcCCCEEE-EEecCC
Confidence 8888988433 3222245664443 344443
No 194
>KOG2921|consensus
Probab=26.06 E-value=1.3e+02 Score=31.03 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=34.0
Q ss_pred CcEEEEEEcCCChhhhc-CCCCCCCEEEeECCccCCCHHHHHHHHHh
Q psy4417 29 GNLIIARILAGSLIDKQ-GVLKVGDVILGVNGENVSSPEDLQIEVVK 74 (440)
Q Consensus 29 ~~i~V~~V~~gs~A~~~-G~L~~GD~Il~VNg~~v~t~~e~~~~L~~ 74 (440)
.++.|..|...||+.-- | |.+||+|.++||.++.+.++=..-++.
T Consensus 220 ~gV~Vtev~~~Spl~gprG-L~vgdvitsldgcpV~~v~dW~ecl~t 265 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRG-LSVGDVITSLDGCPVHKVSDWLECLAT 265 (484)
T ss_pred ceEEEEeccccCCCcCccc-CCccceEEecCCcccCCHHHHHHHHHh
Confidence 34778888887776543 6 999999999999999776665555543
No 195
>PRK04966 hypothetical protein; Provisional
Probab=24.43 E-value=62 Score=24.94 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=31.6
Q ss_pred cceecCHHHHHHhhhcCCeeEEEEEcCCccccc-------hhhHHHHHhcCCeEEee
Q psy4417 218 NYWFTSREVMERDIQDHKFLEYGEHNGHLYGTH-------LDSIREVILSGKICVLD 267 (440)
Q Consensus 218 ~y~fvs~~~f~~~i~~~~fle~~~~~g~~yg~~-------~~~i~~v~~~g~~~il~ 267 (440)
+|.-++.+.+.++|.. |+ ..+|..||.. ++.++..+++|+.+|+-
T Consensus 4 P~~~L~~eTL~nLIee--fv---~ReGTdyG~~E~sl~~kv~qv~~qL~~G~~viv~ 55 (72)
T PRK04966 4 PWQDLAPETLENLIES--FV---LREGTDYGEHERSLEQKVADVKRQLQSGEAVLVW 55 (72)
T ss_pred ChHhCCHHHHHHHHHH--HH---hccCccCCcccccHHHHHHHHHHHHHcCCEEEEE
Confidence 3445788999998873 44 3478888874 56677777888876664
No 196
>COG1160 Predicted GTPases [General function prediction only]
Probab=24.20 E-value=1.6e+02 Score=30.83 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=79.0
Q ss_pred CCeEEeecCcchhhhhhhhhccccccccCCCceEEecCCCccceeecCCCcccch--hhccCccccccCHHHHHHHHHcC
Q psy4417 261 GKICVLDCSPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRE--LEENGQNYWFTSREVMERDIQDH 338 (440)
Q Consensus 261 g~~~il~~~~~g~~~l~~~l~~~~~~~~~~p~~i~i~~~~~~~f~~~~ttr~~~~--~e~~g~~y~f~s~~~f~~~~~~~ 338 (440)
.++||+.-.-.|..+|+++|+.+++. .+ .-.+=|||-.-. .|.+|+.|.|++..=+.+ .+
T Consensus 179 ikiaiiGrPNvGKSsLiN~ilgeeR~------Iv---------~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRr---k~ 240 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAILGEERV------IV---------SDIAGTTRDSIDIEFERDGRKYVLIDTAGIRR---KG 240 (444)
T ss_pred eEEEEEeCCCCCchHHHHHhccCceE------Ee---------cCCCCccccceeeeEEECCeEEEEEECCCCCc---cc
Confidence 57888877667888898888877651 22 445678887654 456688888887654322 22
Q ss_pred ceeeEEEEcCccccccHHHHHHHHhcCCeeEecCC--CcHHHHHHHHHHHHHHHHHhcCCccEEEEcC-C-H---HHHHH
Q psy4417 339 KFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCS--PVEEDIKRTLEESACLQRSYERFIDKVIVNE-D-F---DETFR 411 (440)
Q Consensus 339 ~fle~~~~~~~~yGt~~~~i~~~~~~~~~~i~~~~--~s~e~l~~~l~~~~~~e~~~~~~fd~vi~Nd-d-l---~~a~~ 411 (440)
+--|--++.. . ..+++ ++....+|++.+. .-..+...++.. +..+. .--..+++|. | + +...+
T Consensus 241 ki~e~~E~~S----v-~rt~~-aI~~a~vvllviDa~~~~~~qD~~ia~---~i~~~-g~~~vIvvNKWDl~~~~~~~~~ 310 (444)
T COG1160 241 KITESVEKYS----V-ARTLK-AIERADVVLLVIDATEGISEQDLRIAG---LIEEA-GRGIVIVVNKWDLVEEDEATME 310 (444)
T ss_pred ccccceEEEe----e-hhhHh-HHhhcCEEEEEEECCCCchHHHHHHHH---HHHHc-CCCeEEEEEccccCCchhhHHH
Confidence 2222222111 1 11222 3344455544332 111222222222 11112 2234555662 3 2 26788
Q ss_pred HHHHHHHhccCCCeeeeccceec
Q psy4417 412 TVIELLDTLSNKHQVDSRPTILM 434 (440)
Q Consensus 412 ~l~~~i~~~~~~~~wvp~~w~~~ 434 (440)
+++.-|.+.....-|.|...+-+
T Consensus 311 ~~k~~i~~~l~~l~~a~i~~iSA 333 (444)
T COG1160 311 EFKKKLRRKLPFLDFAPIVFISA 333 (444)
T ss_pred HHHHHHHHHhccccCCeEEEEEe
Confidence 88888888888888888765543
No 197
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=24.15 E-value=4e+02 Score=27.50 Aligned_cols=26 Identities=31% Similarity=0.578 Sum_probs=20.4
Q ss_pred CCccEEEEc-CCHHHHHHHHHHHHHhc
Q psy4417 395 RFIDKVIVN-EDFDETFRTVIELLDTL 420 (440)
Q Consensus 395 ~~fd~vi~N-ddl~~a~~~l~~~i~~~ 420 (440)
..+.+++++ .+.++-+.+...+|..+
T Consensus 367 ~g~~~v~l~~g~~~eR~~~a~~~i~~~ 393 (399)
T PRK08099 367 NNIEYVHVESPDYDKRYLRCVELVDQM 393 (399)
T ss_pred cCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 367799985 78888888888888754
No 198
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=23.69 E-value=79 Score=28.94 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=18.4
Q ss_pred CccEEEEcC-CHHHHHHHHHHHHHhc
Q psy4417 396 FIDKVIVNE-DFDETFRTVIELLDTL 420 (440)
Q Consensus 396 ~fd~vi~Nd-dl~~a~~~l~~~i~~~ 420 (440)
.||++|.|| +.+...++|..++..+
T Consensus 153 ~~D~vi~Nd~~~~~l~~~l~~l~~~i 178 (182)
T TIGR01223 153 DFDWVIENHGVEQRLEEQLENLIEFI 178 (182)
T ss_pred ceeEEEecCCChHHHHHHHHHHHHHH
Confidence 499999997 4656677777777654
No 199
>PHA02757 hypothetical protein; Provisional
Probab=22.93 E-value=78 Score=23.73 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=22.9
Q ss_pred cccchhhHHHHHhcCCeEEeecCcch
Q psy4417 247 YGTHLDSIREVILSGKICVLDCSPVG 272 (440)
Q Consensus 247 yg~~~~~i~~v~~~g~~~il~~~~~g 272 (440)
.|..-+.+.+++.+.|.||+++++..
T Consensus 31 C~v~Qe~~~eildkdK~CiiE~de~s 56 (75)
T PHA02757 31 CGVDQEKANEILDKDKACIIEIDEDS 56 (75)
T ss_pred cCccHHHHHHHhcccceEEEEEcCCC
Confidence 57777889999999999999999984
No 200
>PLN02165 adenylate isopentenyltransferase
Probab=21.14 E-value=23 Score=35.61 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=53.6
Q ss_pred cccCCCccccccccccccccccccccccccccc-CcccccCCCCCCCCCccCCCcceecCHHHHHHhhhcCCeeEEEEEc
Q psy4417 165 AFVPPEADYVHKIGICGTRYIKQYNTLQYNSTL-MSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHN 243 (440)
Q Consensus 165 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ttr~~r~~e~~g~~y~fvs~~~f~~~i~~~~fle~~~~~ 243 (440)
.+.+.||+++||+++...+.......+.-.+.+ .=.-.+..|-+|-..|..|..+|++..- +.+.+.+.
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~----------~~~~~~~s 114 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGEL----------NPDDGELT 114 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhhee----------ccccceee
Confidence 456789999999987655433311111100000 0022334466666667777776654321 01111111
Q ss_pred -CCccccchhhHHHHHhcCCeEEeecCcch--hhhhhhh
Q psy4417 244 -GHLYGTHLDSIREVILSGKICVLDCSPVG--LFTFLLG 279 (440)
Q Consensus 244 -g~~yg~~~~~i~~v~~~g~~~il~~~~~g--~~~l~~~ 279 (440)
+.+.-.-...|+++.+.|+.+|+ ++..| ++.|+.+
T Consensus 115 v~~F~~~a~~~I~~i~~~~~~PI~-vGGTglYi~aLl~g 152 (334)
T PLN02165 115 ASEFRSLASLSISEITSRQKLPIV-AGGSNSFIHALLAD 152 (334)
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEE-ECChHHHHHHHHcC
Confidence 22222335677788889998877 55666 4555443
No 201
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=20.87 E-value=6.5e+02 Score=23.04 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHHHHHh---cCCccEEEEcC--CHHHHHHHHHHHHHh
Q psy4417 375 VEEDIKRTLEESACLQRSY---ERFIDKVIVNE--DFDETFRTVIELLDT 419 (440)
Q Consensus 375 s~e~l~~~l~~~~~~e~~~---~~~fd~vi~Nd--dl~~a~~~l~~~i~~ 419 (440)
|.+++++..+.+.-....| .+.-=.||.|. +++.|..++..+|.+
T Consensus 139 s~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 139 SVEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 5666666655421111222 23333566776 799999999999864
No 202
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=20.31 E-value=3.2e+02 Score=22.83 Aligned_cols=43 Identities=28% Similarity=0.274 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccEEEE------cCCHHHHHHHHHHHHHh
Q psy4417 377 EDIKRTLEESACLQRSYERFIDKVIV------NEDFDETFRTVIELLDT 419 (440)
Q Consensus 377 e~l~~~l~~~~~~e~~~~~~fd~vi~------Nddl~~a~~~l~~~i~~ 419 (440)
-.++++++++.+........+|+||+ +-+.++..++|..++.+
T Consensus 63 NriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 63 NRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 36778888887765544456899886 33455666666666554
Done!