RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4417
(440 letters)
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 193 bits (493), Expect = 8e-59
Identities = 69/206 (33%), Positives = 97/206 (47%), Gaps = 33/206 (16%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEP---TGPMGLVP 155
Y+R LF YD +D + L+F GD+L +++ D WWQA+ + T +G +P
Sbjct: 3 YIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 60
Query: 156 SQELEERRKAFVPPEADYVHKIGICGTRY-------IKQYNT------------------ 190
S+ ERR+ D+ G G + Q
Sbjct: 61 SKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGPTKDRAND 120
Query: 191 --LQYNSTLMSRSFPDTTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYGEHNGHLY 247
L P TTRP RE E +G++Y F +SRE ME+DIQ HKF+E G++N HLY
Sbjct: 121 DLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY 180
Query: 248 GTHLDSIREVILSGKICVLDCSPVGL 273
GT + S+REV GK C+LD S +
Sbjct: 181 GTSVQSVREVAEQGKHCILDVSANAV 206
Score = 142 bits (360), Expect = 2e-39
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 45/186 (24%)
Query: 277 LLGLIEGTVTAKLI---PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWF-TSREVME 332
+LG + L+ P + + TTRP RE E +G++Y F +SRE ME
Sbjct: 110 ILGPTKDRANDDLLSEFPDKFGSCV--------PHTTRPKREYEIDGRDYHFVSSREKME 161
Query: 333 RDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSP------------------ 374
+DIQ HKF+E G++N HLYGT + S+REV GK C+LD S
Sbjct: 162 KDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFI 221
Query: 375 ---------------VEEDIKRTLEESACLQRSYERFIDKVIVNEDFDETFRTVIELLDT 419
EE ++ + + L++ + ++ + F+E + V +++
Sbjct: 222 RPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIED 281
Query: 420 LSNKHQ 425
LS +
Sbjct: 282 LSGPYI 287
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 192 bits (490), Expect = 2e-58
Identities = 73/203 (35%), Positives = 97/203 (47%), Gaps = 28/203 (13%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTG---PM 151
K Y+R LF YDP D LP + GL F HGDIL + N D WWQA+ + +
Sbjct: 3 KRSLYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQI 60
Query: 152 GLVPSQELEERRKAFVPPEADYVHKIG-----------------ICG---TRYIKQYNTL 191
G+VPS+ ER+ + I G R +
Sbjct: 61 GIVPSKRRWERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGPLKDRINDDL--I 118
Query: 192 QYNSTLMSRSFPDTTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYGEHNGHLYGTH 250
P TTRP RE E +G++Y F +SRE MERDIQ+H F+E G++N +LYGT
Sbjct: 119 SEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTS 178
Query: 251 LDSIREVILSGKICVLDCSPVGL 273
+ S+REV GK C+LD S +
Sbjct: 179 VASVREVAEKGKHCILDVSGNAI 201
Score = 141 bits (356), Expect = 7e-39
Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 67/244 (27%)
Query: 223 SREVMERDIQDHKFLEYGEHNGHLYGT----HLDSIREVILSGKICVLDCSPVGLFTFLL 278
S+ ER ++ E N Y ++ R VI+ G P+
Sbjct: 65 SKRRWERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILG--------PLK------ 110
Query: 279 GLIEGTVTAKLI---PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWF-TSREVMERD 334
+ LI P + + TTRP RE E +G++Y F +SRE MERD
Sbjct: 111 ----DRINDDLISEYPDKFGSCV--------PHTTRPKREYEVDGRDYHFVSSREQMERD 158
Query: 335 IQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSP-------------------- 374
IQ+H F+E G++N +LYGT + S+REV GK C+LD S
Sbjct: 159 IQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKP 218
Query: 375 -------------VEEDIKRTLEESACLQRSYERFIDKVIVNEDFDETFRTVIELLDTLS 421
EE K+T E + +++ + + V+ + +E + V ++ + S
Sbjct: 219 KSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQS 278
Query: 422 NKHQ 425
Sbjct: 279 GPTI 282
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 187 bits (475), Expect = 9e-53
Identities = 92/333 (27%), Positives = 141/333 (42%), Gaps = 62/333 (18%)
Query: 1 MEHPPHPLKKILGTGLSPCGLTVEQDANGN-LIIARILAGSLIDKQGVLKVGDVILGVNG 59
+ P P + ++ G + G + +G + I+ ILAG D G L+ GD IL VNG
Sbjct: 302 EDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNG 361
Query: 60 ENV--SSPEDLQIEVVKSDGNIQFTIAPQGDDASL------------------------- 92
++ +S E I + + + + ++ S
Sbjct: 362 VDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLR 421
Query: 93 -PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTG-- 149
K Y+R LF YD +D + L+F GD+L +++ D WWQA+ +
Sbjct: 422 SNPKRGFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSET 479
Query: 150 -PMGLVPSQELEERRKAFVPPEADYVHKIG-------ICGTRYIKQYNTLQYN------- 194
+G +PS+ ERR+ D+ G + + Q
Sbjct: 480 DDIGFIPSKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGP 539
Query: 195 --STLMSR---SFPD--------TTRPMRELEENGQNYWF-TSREVMERDIQDHKFLEYG 240
FPD TTRP RE E +G++Y F +SRE ME+DI+ HKF+E G
Sbjct: 540 TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAG 599
Query: 241 EHNGHLYGTHLDSIREVILSGKICVLDCSPVGL 273
++N HLYGT + S+REV GK C+LD S +
Sbjct: 600 QYNSHLYGTSVQSVREVAEQGKHCILDVSANAV 632
Score = 52.2 bits (124), Expect = 2e-07
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKSDGNIQFTIAPQ 86
++ I +I+ G + G L+V D IL VN +V + + ++ ++ + +
Sbjct: 89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 148
Query: 87 GDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQ 143
M PK +G GD + + +
Sbjct: 149 ------KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHK 199
Score = 32.6 bits (73), Expect = 0.30
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 1 MEHPPHPLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGE 60
ME K LG ++ + ++ + +I+ G K G L++GD IL VN
Sbjct: 156 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 215
Query: 61 NVS--SPEDLQIEVVKSDGNIQFTIAPQGD 88
+ ED + + + +A +
Sbjct: 216 GLEDVMHEDAVAALKNTYDVVYLKVAKPSN 245
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 145 bits (367), Expect = 3e-40
Identities = 31/249 (12%), Positives = 71/249 (28%), Gaps = 48/249 (19%)
Query: 63 SSPEDLQI---EVVKSDGNIQFTIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEI 119
S P D + E ++ A + + +R +Y + +P +
Sbjct: 1 SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 60
Query: 120 GLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEERR-------KAFVPPEAD 172
++F D L + + + +WW +L++ +G +PS E +
Sbjct: 61 AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSK 120
Query: 173 YVHKIGICGTRYIKQYNTLQY--------------------NSTLMSRSFPD-------T 205
T + Y+ + L
Sbjct: 121 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDF-LKHRFEGRISI 179
Query: 206 TRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHL--YGTHLDSIREVILSGKI 263
TR ++ ++ + + H +E L + ++ I E+ + ++
Sbjct: 180 TRVTADIS--------LAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFELARTLQL 231
Query: 264 CVLDCSPVG 272
VLD +
Sbjct: 232 VVLDADTIN 240
Score = 88.0 bits (217), Expect = 2e-19
Identities = 13/155 (8%), Positives = 40/155 (25%), Gaps = 47/155 (30%)
Query: 305 FASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHL--YGTHLDSIREVI 362
TR ++ ++ + + H +E L + ++ I E+
Sbjct: 175 GRISITRVTADIS--------LAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFELA 226
Query: 363 LSGKICVLDCSPV-------------------------------------EEDIKRTLEE 385
+ ++ VLD + + + +
Sbjct: 227 RTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVA 286
Query: 386 SACLQRSYERFIDKVIVNEDFDETFRTVIELLDTL 420
+ L + D ++ ++ + + L+
Sbjct: 287 ADKLAQCPPELFDVILDENQLEDACEHLADYLEAY 321
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 140 bits (355), Expect = 6e-40
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 39/169 (23%)
Query: 283 GTVTAKLI---PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHK 339
+ LI P ++ PI TTRP ++ EENG+NY+F S + M +DI +++
Sbjct: 19 RHIKNTLITKHPDRFAYPI--------PHTTRPPKKDEENGKNYYFVSHDQMMQDISNNE 70
Query: 340 FLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPV------------------------ 375
+LEYG H +YGT L++IR++ G I +LD P
Sbjct: 71 YLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITP 130
Query: 376 ----EEDIKRTLEESACLQRSYERFIDKVIVNEDFDETFRTVIELLDTL 420
+E ++R +ES LQR+Y + D I+N + DET R + E ++ +
Sbjct: 131 GLNEDESLQRLQKESDILQRTYAHYFDLTIINNEIDETIRHLEEAVELV 179
Score = 112 bits (284), Expect = 1e-29
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 11/90 (12%)
Query: 195 STLMSR---SFPD--------TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHN 243
+ + PD TTRP ++ EENG+NY+F S + M +DI ++++LEYG H
Sbjct: 19 RHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHE 78
Query: 244 GHLYGTHLDSIREVILSGKICVLDCSPVGL 273
+YGT L++IR++ G I +LD P L
Sbjct: 79 DAMYGTKLETIRKIHEQGLIAILDVEPQAL 108
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 139 bits (353), Expect = 2e-39
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 36/171 (21%)
Query: 283 GTVTAKLI---PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHK 339
+ L+ P + P+ TTRP R+ EE+G+ Y F S E M R+I ++
Sbjct: 33 SHIKNALLSQNPEKFVYPV--------PYTTRPPRKSEEDGKEYHFISTEEMTRNISANE 84
Query: 340 FLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSP------------------------- 374
FLE+G + G+++GT +++ ++ KI +LD P
Sbjct: 85 FLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGT 144
Query: 375 VEEDIKRTLEESACLQRSYERFIDKVIVNEDFDETFRTVIELLDTLSNKHQ 425
E +++ ++S ++ Y + D +VN DET + + E D + Q
Sbjct: 145 QTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 195
Score = 112 bits (283), Expect = 2e-29
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 195 STLMSR---SFPD--------TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHN 243
S + + P+ TTRP R+ EE+G+ Y F S E M R+I ++FLE+G +
Sbjct: 33 SHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQ 92
Query: 244 GHLYGTHLDSIREVILSGKICVLDCSPVGL 273
G+++GT +++ ++ KI +LD P L
Sbjct: 93 GNMFGTKFETVHQIHKQNKIAILDIEPQTL 122
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 127 bits (320), Expect = 5e-33
Identities = 47/306 (15%), Positives = 93/306 (30%), Gaps = 42/306 (13%)
Query: 2 EHPPHPLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGEN 61
+K + GL + + + +A +L S K+G L+ GD IL VN +
Sbjct: 4 MILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVD 62
Query: 62 VS--SPEDLQIEVVKSDGNIQFTIAP------QGDDASLPIKPVCYMRCLFTYDPKEDSL 113
+ E+ + ++ + TI + Y+R F Y+ +
Sbjct: 63 FTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPY- 121
Query: 114 LPCKEIGLAFNHGDILQILN---QKDPNWWQAQLIEPTGP---MGLVPSQELEERRKAFV 167
GL+FN G++ ++++ W A I G++P++ E+ +
Sbjct: 122 ------GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQ 175
Query: 168 PPEADYVHKIGICGTRYIKQYNT-LQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREV 226
R+ ++ + S E R V
Sbjct: 176 YTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPV 235
Query: 227 -------------------MERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLD 267
I + + G L +I+++I K +LD
Sbjct: 236 TIFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLD 295
Query: 268 CSPVGL 273
+P +
Sbjct: 296 VTPNAV 301
Score = 70.2 bits (171), Expect = 2e-13
Identities = 21/155 (13%), Positives = 40/155 (25%), Gaps = 48/155 (30%)
Query: 308 DTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKI 367
D R EE I + + G L +I+++I K
Sbjct: 243 DVAREKLAREEPDIY-----------QIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKH 291
Query: 368 CVLDCSPV------------------------------------EEDIKRTLEESACLQR 391
+LD +P + ++ E S L++
Sbjct: 292 ALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRK 351
Query: 392 SYERFIDKVI-VNEDFDETFRTVIELLDTLSNKHQ 425
+ I +N D + + E + N+
Sbjct: 352 NNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLV 386
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 124 bits (311), Expect = 2e-31
Identities = 60/453 (13%), Positives = 124/453 (27%), Gaps = 109/453 (24%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SP 65
+K + GL + + + +A +L S K+G L+ GD IL VN + +
Sbjct: 2 MKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIR 60
Query: 66 EDLQIEVVKSDGNIQFTIAP------QGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEI 119
E+ + ++ + TI + Y+R F Y+ +
Sbjct: 61 EEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPY------- 113
Query: 120 GLAFNHGDILQILN---QKDPNWWQAQLIEPTG---PMGLVPSQELEERRKAFVPPEADY 173
GL+FN G++ ++++ W A I G++P++ E+ +
Sbjct: 114 GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKT 173
Query: 174 VHKIGICGTRYIKQY----NTLQYNSTLMSRSFPDTTRPMRELEENGQNYW--------- 220
R+ N + L ++ + +
Sbjct: 174 AGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPI 233
Query: 221 -------FTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVGL 273
E I + + G L +I+++I K +LD +P
Sbjct: 234 ADVAREKLAREEPDIYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNA- 292
Query: 274 FTFLLGLIEGTVTAKLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMER 333
++ A+ P + S + ++ SR+ +
Sbjct: 293 -------VDRLNYAQWYPIVVFLNPDS------------KQGVKTMRMRLCPESRKSARK 333
Query: 334 DIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVEEDIKRTLEESACLQRSY 393
+ L +N HL
Sbjct: 334 LYERSHKLRK--NNHHL------------------------------------------- 348
Query: 394 ERFIDKVIVNEDFDETFRTVIELLDTLSNKHQV 426
F + +N D + + E + N+
Sbjct: 349 --FTTTINLNSMNDGWYGALKEAIQQQQNQLVW 379
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 89.5 bits (223), Expect = 3e-21
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 53/178 (29%)
Query: 283 GTVTAKLI-----PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQD 337
T+ KL + +S+ S TTR R E NG++Y F S + + I++
Sbjct: 15 STLLKKLFAEYPDSFGFSV----------SSTTRTPRAGEVNGKDYNFVSVDEFKSMIKN 64
Query: 338 HKFLEYGEHNGHLYGTHLDSIREVILSGKICVLD-----------CSPV----------- 375
++F+E+ + +G+ YG+ + S+++V SGK C+LD +
Sbjct: 65 NEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPS 124
Query: 376 ---------------EEDIKRTLEESAC-LQRSYERFIDKVIVNEDFDETFRTVIELL 417
EE I + L + L + DKVIVN+D D+ ++ + + +
Sbjct: 125 VEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFI 182
Score = 83.3 bits (207), Expect = 7e-19
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 205 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 264
TTR R E NG++Y F S + + I++++F+E+ + +G+ YG+ + S+++V SGK C
Sbjct: 36 TTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTC 95
Query: 265 VLD 267
+LD
Sbjct: 96 ILD 98
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 88.0 bits (219), Expect = 2e-20
Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 54/179 (30%)
Query: 283 GTVTAKLI-----PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQD 337
GT+ K++ + +SI S TTR RE E NG +Y+F ++ ER +++
Sbjct: 26 GTLIKKVLSEFPSRFRFSI----------SCTTRNKREKETNGVDYYFVDKDDFERKLKE 75
Query: 338 HKFLEYGEHNGHLYGTHLDSIREVILSGKICVLD---------------CSPV------- 375
+FLE+ ++ + YGT + GKIC+ + +
Sbjct: 76 GQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPP 135
Query: 376 ----------------EEDIKRTLEESAC-LQRSYERFIDKVIVNEDFDETFRTVIELL 417
E+I + ++E + + + + IVN+D T+ + E L
Sbjct: 136 SIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVNDDLARTYAELREYL 194
Score = 83.4 bits (207), Expect = 7e-19
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 205 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 264
TTR RE E NG +Y+F ++ ER +++ +FLE+ ++ + YGT + GKIC
Sbjct: 47 TTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKIC 106
Query: 265 VLD 267
+ +
Sbjct: 107 LFE 109
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 87.9 bits (219), Expect = 2e-20
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 53/178 (29%)
Query: 283 GTVTAKLI-----PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQD 337
T+ KL + +S+ S TTR R EE+G++Y+F +RE+M+RDI
Sbjct: 18 STLLKKLFQEHSSIFGFSV----------SHTTRNPRPGEEDGKDYYFVTREMMQRDIAA 67
Query: 338 HKFLEYGEHNGHLYGTHLDSIREVILSGKICVLD-------------CSPV--------- 375
F+E+ E +G+LYGT +++R V +ICVLD P+
Sbjct: 68 GDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSL 127
Query: 376 --------------EEDIKRTLEESAC-LQRSYERFI-DKVIVNEDFDETFRTVIELL 417
EE + + L + ++ S E + D VI+N+D D+ + T+ + L
Sbjct: 128 DVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQAL 185
Score = 84.5 bits (210), Expect = 3e-19
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 11/84 (13%)
Query: 195 STLMSR---SFPD--------TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHN 243
STL+ + TTR R EE+G++Y+F +RE+M+RDI F+E+ E +
Sbjct: 18 STLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFS 77
Query: 244 GHLYGTHLDSIREVILSGKICVLD 267
G+LYGT +++R V +ICVLD
Sbjct: 78 GNLYGTSKEAVRAVQAMNRICVLD 101
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 86.8 bits (216), Expect = 7e-20
Identities = 35/179 (19%), Positives = 67/179 (37%), Gaps = 54/179 (30%)
Query: 283 GTVTAKLI-----PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQD 337
GT+ KL+ + +S+ S TTR RE E+ G +Y+F + + E +++
Sbjct: 37 GTLIKKLLNEFPNYFYFSV----------SCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86
Query: 338 HKFLEYGEHNGHLYGTHLDSIREVILSGKICVLD---------------CSPV------- 375
FLEY + + YGT + KIC+ + + +
Sbjct: 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPP 146
Query: 376 ----------------EEDIKRTLEESAC-LQRSYERFIDKVIVNEDFDETFRTVIELL 417
+E I++ +E+ L + + I+N+D T++ + L
Sbjct: 147 STDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205
Score = 83.8 bits (208), Expect = 8e-19
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 205 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 264
TTR RE E+ G +Y+F + + E +++ FLEY + + YGT + KIC
Sbjct: 58 TTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC 117
Query: 265 VLD 267
+ +
Sbjct: 118 LFE 120
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 83.7 bits (208), Expect = 6e-19
Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 50/175 (28%)
Query: 283 GTVTAKLI-----PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQD 337
GTV + + YSI S TTR RE E++G +Y+F SREV E+ I+D
Sbjct: 22 GTVREAVFKDPETSFDYSI----------SMTTRLPREGEQDGVDYYFRSREVFEQAIKD 71
Query: 338 HKFLEYGEHNGHLYGTHLDSIREVILSGKICVLD---------------------CSPVE 376
K LEY E+ G+ YGT L+ + E + +G L+ P
Sbjct: 72 GKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDL 131
Query: 377 EDIKRTL-----EESACLQR---------SYERFIDKVIVNEDFDETFRTVIELL 417
++K + E ++ D +VN+ + + ++
Sbjct: 132 SELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDVVANAVQKIKGIV 186
Score = 81.0 bits (201), Expect = 7e-18
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 205 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 264
TTR RE E++G +Y+F SREV E+ I+D K LEY E+ G+ YGT L+ + E + +G
Sbjct: 43 TTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDI 102
Query: 265 VLD 267
L+
Sbjct: 103 FLE 105
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 83.3 bits (207), Expect = 8e-19
Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 50/175 (28%)
Query: 283 GTVTAKLI-----PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQD 337
GTV ++ Y YSI S TTR MRE E +G +Y+F +R+ E I+D
Sbjct: 20 GTVRKRIFEDPSTSYKYSI----------SMTTRQMREGEVDGVDYFFKTRDAFEALIKD 69
Query: 338 HKFLEYGEHNGHLYGTHLDSIREVILSGKICVLD---------------------CSPVE 376
+F+EY E+ G+ YGT + +++ + G L+ P
Sbjct: 70 DQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSL 129
Query: 377 EDIKRTLE------ESACLQR--------SYERFIDKVIVNEDFDETFRTVIELL 417
E ++ L + R D V+VN++ + + ++
Sbjct: 130 EHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDEVELAKNRIQCIV 184
Score = 80.6 bits (200), Expect = 8e-18
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 205 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 264
TTR MRE E +G +Y+F +R+ E I+D +F+EY E+ G+ YGT + +++ + G
Sbjct: 41 TTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDV 100
Query: 265 VLD 267
L+
Sbjct: 101 FLE 103
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 82.6 bits (203), Expect = 1e-17
Identities = 34/213 (15%), Positives = 63/213 (29%), Gaps = 46/213 (21%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN---------WWQAQLIEPTG 149
Y+R F +P GL F GD+ +L+ P W A +
Sbjct: 6 YIRTHFELEP-------SPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDL 58
Query: 150 ---PMGLVPSQELEERRKAFVPPEADYVHKIGICGTRYIKQ------------YNTLQYN 194
G++P+Q E+ + + G + T Q +
Sbjct: 59 REQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRS 118
Query: 195 STLMSRSFPDTTRPMRELEENGQNYWF--------TSREVMERDIQDH--KFLEYGEH-- 242
+S P E + + + M++ + +F E E
Sbjct: 119 REDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQF-EIAETVS 177
Query: 243 --NGHLYGTHLDSIREVILSGKICVLDCSPVGL 273
+ LD++R + K +LD +P +
Sbjct: 178 RTDSPSKIIKLDTVRVIAEKDKHALLDVTPSAI 210
Score = 53.7 bits (128), Expect = 4e-08
Identities = 12/120 (10%), Positives = 30/120 (25%), Gaps = 37/120 (30%)
Query: 343 YGEHNGHLYGTHLDSIREVILSGKICVLDCSPV--------------------------- 375
+ LD++R + K +LD +P
Sbjct: 176 VSRTDSPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKA 235
Query: 376 ---------EEDIKRTLEESACLQRSYERFIDKVI-VNEDFDETFRTVIELLDTLSNKHQ 425
+R ++ L++ I +N D ++ + ++ +
Sbjct: 236 LRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPI 295
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 79.9 bits (198), Expect = 2e-17
Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 51/176 (28%)
Query: 283 GTVTAKLI----PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDH 338
TV L +S+ S TTR R E +G +Y F ++ I
Sbjct: 34 STVVRCLRERIPNLHFSV----------SATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83
Query: 339 KFLEYGE--HNGHLYGTHLDSIREVILSGKICVLD---------------------CSPV 375
+ LE+ E H GT +R +G +++ P
Sbjct: 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPS 143
Query: 376 EEDIKRTLE------ESACLQR--------SYERFIDKVIVNEDFDETFRTVIELL 417
+D++ L +R + + DKV+VN + ++ LL
Sbjct: 144 WQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLL 199
Score = 75.3 bits (186), Expect = 5e-16
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 205 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGE--HNGHLYGTHLDSIREVILSGK 262
TTR R E +G +Y F ++ I + LE+ E H GT +R +G
Sbjct: 54 TTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGV 113
Query: 263 ICVLD 267
+++
Sbjct: 114 PVLIE 118
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 72.8 bits (179), Expect = 4e-16
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SP 65
+K+ + G+ ++ + + +ARIL G +I +QG L VGD IL +NG NV+ S
Sbjct: 18 FEKVTEEPM---GICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSV 74
Query: 66 EDLQIEVVKSDGNIQFTIAP 85
+ LQ + ++ G I + P
Sbjct: 75 DQLQKAMKETKGMISLKVIP 94
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 72.0 bits (177), Expect = 5e-16
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SP 65
+K + G+T++ + + I+ARI+ G +I +QG L VGD I +NG +V+ +
Sbjct: 7 FQKNTDEPM---GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTV 63
Query: 66 EDLQIEVVKSDGNIQFTIAPQGDD 89
E LQ + + G+I F I P +
Sbjct: 64 EQLQKMLREMRGSITFKIVPSYRE 87
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 71.8 bits (177), Expect = 8e-15
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 283 GTVTAKLI----PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDH 338
++ L+ SI S TTRP R ++ G +Y+F + +++
Sbjct: 21 TSLVRALVKALAEIKISI----------SHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70
Query: 339 KFLEYGEHNGHLYGTHLDSIREVILSGKICVLD 371
FLE+ YGT D + + +G+ +L+
Sbjct: 71 AFLEHATIYERHYGTEKDWVLRQLKAGRDVLLE 103
Score = 69.1 bits (170), Expect = 7e-14
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 205 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 264
TTRP R ++ G +Y+F + +++ FLE+ YGT D + + +G+
Sbjct: 41 TTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTEKDWVLRQLKAGRDV 100
Query: 265 VLD 267
+L+
Sbjct: 101 LLE 103
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 71.8 bits (177), Expect = 2e-14
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 283 GTVTAKLIP-----YTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQD 337
TV KL+ S+ S TTR R+ E+ G++Y+F RE R +
Sbjct: 41 TTVANKLLEKQKNNIVKSV----------SVTTRAARKGEKEGKDYYFVDREEFLRLCSN 90
Query: 338 HKFLEYGEHNGHLYGTHLDSIREVILSGKICVLD 371
+ +E+ E G+ YG ++ + + G +L
Sbjct: 91 GEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLV 124
Score = 69.1 bits (170), Expect = 1e-13
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 205 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 264
TTR R+ E+ G++Y+F RE R + + +E+ E G+ YG ++ + + G
Sbjct: 62 TTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVST 121
Query: 265 VLD 267
+L
Sbjct: 122 LLV 124
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 71.4 bits (176), Expect = 2e-14
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 283 GTVTAKLI------PYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQ 336
++ L+ S+ S TTR R E +G++Y+F + + + I
Sbjct: 30 SSLIQALLKTQPLYDTQVSV----------SHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 79
Query: 337 DHKFLEYGEHNGHLYGTHLDSIREVILSGKICVLD 371
FLE+ E G+ YGT ++I +V+ +G LD
Sbjct: 80 RDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLD 114
Score = 69.5 bits (171), Expect = 6e-14
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 205 TTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHNGHLYGTHLDSIREVILSGKIC 264
TTR R E +G++Y+F + + + I FLE+ E G+ YGT ++I +V+ +G
Sbjct: 52 TTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDV 111
Query: 265 VLD 267
LD
Sbjct: 112 FLD 114
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 67.8 bits (166), Expect = 2e-14
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 18 PCGLTVEQDA-NGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVK 74
P G T+++D G +I+ARI+ G D+ G++ VGD + VNG V PE++ + +
Sbjct: 16 PLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQ 75
Query: 75 SDGNIQFTIAPQGDDAS 91
S G I F I P + +
Sbjct: 76 SQGAITFKIIPGSKEET 92
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 67.9 bits (166), Expect = 3e-14
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SP 65
++K L G TV + ++II+RI+ G +K G+L GD +L +NG +
Sbjct: 31 IEKARDIPL---GATVRNE-MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDV 86
Query: 66 EDLQIEVVKSDGNIQFTIAPQGDDAS 91
++ + G + F + P +S
Sbjct: 87 NEVFDLLSDMHGTLTFVLIPSSGPSS 112
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 63.0 bits (153), Expect = 9e-13
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 84 APQGDDASLPIKPVCYMRCLFTYDPKEDSLLP-CKEIGLAFNHGDILQILNQKDPN-WWQ 141
G D P LF YDP S P E L F G I+++ KD + +++
Sbjct: 4 GSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYR 63
Query: 142 AQLIEPTGPMGLVPSQELEE 161
+ +GL+P + E
Sbjct: 64 GET---CARLGLIPCNMVSE 80
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 62.8 bits (153), Expect = 1e-12
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV-SSPE 66
++K G L G+T + G L+IARIL G ++ +QG+L VGD+I VNG+ V S P
Sbjct: 12 IRKTAGEHL---GVTFRVE-GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPR 67
Query: 67 DLQIEVVKSDGNIQFTIAP 85
LQ + + G++ I
Sbjct: 68 ALQELLRNASGSVILKILS 86
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 60.9 bits (148), Expect = 9e-12
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 8 LKKILGTGLSPCGLTVEQDANGN---LIIARILAGSLIDKQGVLKVGDVILGVNGENVS- 63
+ K G+ L G+++ + N + I RI S++D+ G L GD IL ++G ++
Sbjct: 21 IVKTPGSAL---GISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEH 77
Query: 64 -SPEDLQIEVVKSDGNIQFTIAPQGDDASLPIKP 96
S + + ++ I P P++P
Sbjct: 78 CSLLEATKLLASISEKVRLEILPVPQSQR-PLRP 110
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 56.9 bits (138), Expect = 7e-11
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 90 ASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTG 149
S+ + + L+ Y P + + L GD IL + + WW+A+ G
Sbjct: 1 GSMSTSELKKVVALYDYMPMNAN-----D--LQLRKGDEYFILEESNLPWWRARD--KNG 51
Query: 150 PMGLVPS 156
G +PS
Sbjct: 52 QEGYIPS 58
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 56.3 bits (136), Expect = 1e-10
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN-WWQAQLIEPTGPM 151
M YDP + + + LA GD++ + D ++ +L G
Sbjct: 3 SGSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGEL---GGHR 59
Query: 152 GLVPSQELEE 161
GLVP+ L+
Sbjct: 60 GLVPAHLLDH 69
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 55.1 bits (133), Expect = 4e-10
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 85 PQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQL 144
P+ + S + L+ Y + LA + +L+ + +WW+ Q
Sbjct: 8 PEDNRRSFQEPEETLVIALYDYQTNDPQ-------ELALRCDEEYYLLDSSEIHWWRVQ- 59
Query: 145 IEPTGPMGLVPSQELEER 162
+ G G PS L E+
Sbjct: 60 -DKNGHEGYAPSSYLVEK 76
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 54.7 bits (132), Expect = 8e-10
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKSDG 77
GLT+ + G I RI G +ID + VGD I +NGEN+ D+ ++ +
Sbjct: 19 GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKK 78
Query: 78 NIQFTI 83
FT+
Sbjct: 79 EELFTM 84
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 55.2 bits (133), Expect = 1e-09
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 15 GLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEV 72
G S + + I+R++ G L G+L V D +L VNG VS S + + +
Sbjct: 51 GSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMM 110
Query: 73 VKSDGNIQFTIAP 85
+ + N+ T+ P
Sbjct: 111 IANSRNLIITVRP 123
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 53.0 bits (128), Expect = 1e-09
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
Y+R LF ++ ++ LP F GDIL+I ++ + WW A+ G G++P
Sbjct: 3 AEYVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAED--SEGKRGMIPV 53
Query: 157 ---QELEE 161
++
Sbjct: 54 PYVEKYHH 61
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 53.1 bits (128), Expect = 2e-09
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 92 LPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPM 151
L + L+ Y + E LA + +L+ + +WW+ Q G
Sbjct: 14 LWEPEETVVIALYDYQTNDPQ-----E--LALRRNEEYCLLDSSEIHWWRVQD--RNGHE 64
Query: 152 GLVPS 156
G VPS
Sbjct: 65 GYVPS 69
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 52.3 bits (126), Expect = 3e-09
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 91 SLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGP 150
+ V L+ Y+ + + L+F+ G+ QILN + +WW+A+ + TG
Sbjct: 9 TRGGTGVTLFVALYDYEAITED-----D--LSFHKGEKFQILNSSEGDWWEARSLT-TGE 60
Query: 151 MGLVPS 156
G +PS
Sbjct: 61 TGYIPS 66
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 4e-09
Identities = 82/520 (15%), Positives = 148/520 (28%), Gaps = 192/520 (36%)
Query: 7 PLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVL-KVGDVILGVNGENVSSP 65
P K +L G+ G T +A + V K+ I +N +N +SP
Sbjct: 149 PAKNVLIDGVLGSGKTW-------------VALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 66 EDLQIEVVKSDGNIQFTIAP---QGDDASLPIKPVC-----YMRCLFTYDPKEDSLLPCK 117
E + +E+++ + + I P D S IK +R L P E+ LL
Sbjct: 196 ETV-LEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--- 248
Query: 118 EIGLAFNHGDILQIL-NQKDPNWWQA-----QLIEPTGPMG----LVPSQE----LEERR 163
+L N ++ W A +++ T L + L+
Sbjct: 249 -------------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 164 KAFV-------------------PPEADYVH--KIGICGTR---------YIKQYNTLQY 193
P E + ++ I K N +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 194 NSTLMSRS------------------FPDTTR-PMRELEENGQNYWFTSREVMERDIQDH 234
+ + S FP + P L WF + + +
Sbjct: 356 TTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL----IWFDVIKSDVMVVVN- 409
Query: 235 KFLEYG-------EHNGHLYGTHLDSIREVILSGKICVLDCSPVGLFTFLLGLIEGTVTA 287
K +Y E + +L+ ++ E +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKL----------------------ENEYALHR 447
Query: 288 KLIPYTYSIPICSWSSFFASDTTRPMRELEENGQNYWFTSREVMERDIQDHKFLEYGEHN 347
++ + Y+IP F + D P + Y+++ + +
Sbjct: 448 SIVDH-YNIPKT----FDSDDLIPPYLD------QYFYS-------------HIGH---- 479
Query: 348 GHLYGTHL----DSIREVILS-----GKICVLDCSPVEE--DIKRTLEESACLQRSYERF 396
HL R V L KI D + I TL++ + Y+ +
Sbjct: 480 -HLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQ----LKFYKPY 533
Query: 397 IDKVIVNEDFDETFRTVIELLDTLSN--KHQVDSRPTILM 434
I N+ E R V +LD L ++ + S+ T L+
Sbjct: 534 ICD---NDPKYE--RLVNAILDFLPKIEENLICSKYTDLL 568
Score = 34.4 bits (78), Expect = 0.095
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 36/126 (28%)
Query: 338 HKFLEYGEHNGHLYGTHLDSIREVILSGKICVLDCSPVE---------EDIKRTLEESAC 388
H E GEH + Y I V + DC V+ E+I +
Sbjct: 6 HMDFETGEHQ-YQYK----DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 389 LQRSY--------------ERFIDKVIVNEDFDETFRTVIELLDTLSNKHQVDSRPTILM 434
+ + ++F+++V+ ++ F L+ + + + S T +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVL-RINYK--F-----LMSPIKTEQRQPSMMTRMY 112
Query: 435 VKCASP 440
++
Sbjct: 113 IEQRDR 118
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 51.4 bits (124), Expect = 4e-09
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
Y+R LF ++ ++ LP F GDIL+I ++ + WW A+ G G++P
Sbjct: 3 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAED--SEGKRGMIPV 51
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 52.6 bits (126), Expect = 4e-09
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 82 TIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN-WW 140
+ G V ++Y+P D E L G L + D + ++
Sbjct: 2 SSGSSGTSKQRYSGKVHLCVARYSYNP-FDGPNENPEAELPLTAGKYLYVYGDMDEDGFY 60
Query: 141 QAQLIEPTGPMGLVPS 156
+ +L+ G GLVPS
Sbjct: 61 EGELL--DGQRGLVPS 74
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 52.8 bits (127), Expect = 4e-09
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 82 TIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQ 141
+ P + A+ PVC + ++ Y + E L+F+ G ++ ++N+ DP+WWQ
Sbjct: 19 LLGPSSERATPAFHPVCQVIAMYDYAANNED-----E--LSFSKGQLINVMNKDDPDWWQ 71
Query: 142 AQLIEPTGPMGLVPS 156
++ G GL PS
Sbjct: 72 GEI---NGVTGLFPS 83
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 52.5 bits (126), Expect = 5e-09
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 18/86 (20%)
Query: 90 ASLPIKP--VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDP-----NWWQA 142
S PI P + + R L+ + P+ E+ +A GD++ IL++KDP +WW+
Sbjct: 5 GSEPIDPSKLEFARALYDFVPENP------EMEVALKKGDLMAILSKKDPLGRDSDWWKV 58
Query: 143 QLIEPTGPMGLVPS---QELEERRKA 165
+ G +G +P + ++ R+K
Sbjct: 59 RT--KNGNIGYIPYNYIEIIKRRKKI 82
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 52.0 bits (125), Expect = 5e-09
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 84 APQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQ 143
+ + L+ Y K +E + GDIL +LN + +WW+ +
Sbjct: 4 SHHHHHHGSDETGKELVLALYDYQEKSP-----RE--VTMKKGDILTLLNSTNKDWWKVE 56
Query: 144 LIEPTGPMGLVPS 156
+ G VP+
Sbjct: 57 V---NDRQGFVPA 66
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 51.1 bits (123), Expect = 6e-09
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ ++ + E + L G IL + D +WW+A+ G G +PS
Sbjct: 4 IVVAMYDFQATEAH-----D--LRLERGQEYIILEKNDLHWWRARD--KYGSEGYIPS 52
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 51.3 bits (123), Expect = 7e-09
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIE------PTG 149
Y LF Y + + L+F GD LQ+L+ WW A+ +E
Sbjct: 6 SGQYFVALFDYQARTAE-----D--LSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQ 58
Query: 150 PMGLVPS 156
G +PS
Sbjct: 59 LQGYIPS 65
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 52.1 bits (125), Expect = 7e-09
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNL----IIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
L+K G GL G+ + + G+L +IA +L G ++ G L +GD + +NG ++
Sbjct: 15 LEKRRGEGL---GVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLV 71
Query: 64 --SPEDLQ--IEVVKSDGNIQFTIAP 85
Q + KS ++ +I
Sbjct: 72 GLPLAACQAAVRETKSQTSVTLSIVH 97
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 51.2 bits (123), Expect = 8e-09
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 94 IKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGL 153
++ L+ Y+ + + + L+F+ G+ QILN + +WW+A+ + TG G
Sbjct: 2 VQISTLFEALYDYEARTED-----D--LSFHKGEKFQILNSSEGDWWEARSLT-TGETGY 53
Query: 154 VPS 156
+PS
Sbjct: 54 IPS 56
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 50.8 bits (122), Expect = 8e-09
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPT-----GPMGL 153
+ L+ Y K E + GDIL +LN + +WW+ ++ G
Sbjct: 3 LVLALYDYQEKSPR-----E--VTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGF 55
Query: 154 VPS---QELE 160
VP+ ++L+
Sbjct: 56 VPAAYVKKLD 65
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 50.8 bits (122), Expect = 1e-08
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
V L+ Y+ + L+F+ G+ QIL +WW+A+ + TG G +P
Sbjct: 5 GVTLFVALYDYNATRWT-------DLSFHKGEKFQILEFGPGDWWEARSLT-TGETGYIP 56
Query: 156 S 156
S
Sbjct: 57 S 57
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 50.9 bits (122), Expect = 1e-08
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 87 GDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ-KDPNWWQAQLI 145
G + P + + E LAF GD++ IL ++ +W++ +
Sbjct: 7 GRMPTRRWAPGTQCITKCEHTRPKP-----GE--LAFRKGDVVTILEACENKSWYRVKH- 58
Query: 146 EPTGPMGLVPSQELEER 162
+G GL+ + L ER
Sbjct: 59 HTSGQEGLLAAGALRER 75
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 50.5 bits (121), Expect = 1e-08
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN-WWQAQLIEPTGPMGLV 154
M L+ YDP+E S E L F GDI+ + + D + ++ +L G GLV
Sbjct: 6 SGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGEL---NGQKGLV 62
Query: 155 PS 156
PS
Sbjct: 63 PS 64
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 51.9 bits (124), Expect = 2e-08
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ L+ + + D L G+ L I D W+ A+ I G GLVP
Sbjct: 5 FAVTLYEFKAERDDELDVSP-------GENLSICAHYDYEWFIAKPINRLGGPGLVPV 55
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 49.9 bits (120), Expect = 2e-08
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
+ Y +++ + L+F G+ + IL Q +WW + G G +P
Sbjct: 6 SGEEFVAIADYAATDET-----Q--LSFLRGEKILILRQTTADWWWGER---AGCCGYIP 55
Query: 156 S 156
+
Sbjct: 56 A 56
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 50.1 bits (120), Expect = 2e-08
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 18/84 (21%)
Query: 90 ASLPIKP--VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDP-----NWWQA 142
S PI P + + R L+ + P+ E+ +A GD++ IL++KDP +WW+
Sbjct: 5 GSEPIDPSKLEFARALYDFVPENP------EMEVALKKGDLMAILSKKDPLGRDSDWWKV 58
Query: 143 QLIEPTGPMGLVPS---QELEERR 163
+ G +G +P + ++ R+
Sbjct: 59 RT--KNGNIGYIPYNYIEIIKRRK 80
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 50.1 bits (120), Expect = 2e-08
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 84 APQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQ 143
G + L K +R L+ ++ ED E L F HG+I+ +L+ D NWW+ +
Sbjct: 4 GSSGSEIQLNNKVARKVRALYDFEAVED-----NE--LTFKHGEIIIVLDDSDANWWKGE 56
Query: 144 LIEPTGPMGLVPS 156
+GL PS
Sbjct: 57 N---HRGIGLFPS 66
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 49.7 bits (119), Expect = 3e-08
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
V F Y + +E L+F GD+L++ + +WW+ + G GL+P
Sbjct: 9 GVVEAVACFAYTGRTA-----QE--LSFRRGDVLRLHERASSDWWRGEH---NGMRGLIP 58
Query: 156 S 156
Sbjct: 59 H 59
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 49.2 bits (118), Expect = 3e-08
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 12/64 (18%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS---Q 157
+ + ++ + L F G+IL ++ +K WW A+ + G GLVP +
Sbjct: 14 IAVGDFTAQQVG-----D--LTFKKGEILLVIEKKPDGWWIAK--DAKGNEGLVPRTYLE 64
Query: 158 ELEE 161
E
Sbjct: 65 PYSE 68
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 49.3 bits (118), Expect = 4e-08
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ L+ Y K +E + GDIL +LN + +WW+ ++ G VP+
Sbjct: 2 KELVLALYDYQEKSP-----RE--VTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPA 51
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 50.0 bits (120), Expect = 4e-08
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SP 65
L K G L GL++ + G IA ++ G + L+ GD+I NG+ +
Sbjct: 14 LMKKAGKEL---GLSLSPNEIG-CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF 69
Query: 66 EDLQIEVVKSDGNIQFTIA 84
+ ++G + +
Sbjct: 70 QVSYALFKGANGKVSMEVT 88
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 50.4 bits (121), Expect = 4e-08
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQGDDAS 91
+I +++ GS + G L+ GDVIL + + V + ED+ E V++ + I + +
Sbjct: 38 LIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDVY-EAVRTQSQLAVQIRRGRETLT 95
Query: 92 LPIKP 96
L + P
Sbjct: 96 LYVTP 100
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 48.7 bits (117), Expect = 4e-08
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
V R L+T++P+ E L F GDI+ I + D NWW+ G GL+PS
Sbjct: 3 VKVFRALYTFEPRTP-----DE--LYFEEGDIIYITDMSDTNWWKGTS---KGRTGLIPS 52
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 52.3 bits (125), Expect = 4e-08
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 87 GDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIE 146
G S + R + Y+ E +A + GD+++++ + + WW Q+
Sbjct: 1 GPLGSPEFIILQTYRAIADYEKTSG-----SE--MALSTGDVVEVVEKSESGWWFCQM-- 51
Query: 147 PTGPMGLVPSQELEERRKAFVPPEADYVHKIGICGTRY 184
G +P+ LE + + +
Sbjct: 52 -KAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIK 88
Score = 41.5 bits (97), Expect = 2e-04
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 79 IQFTIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN 138
++ +P + P + Y E E ++ G+ ++++++
Sbjct: 63 LEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEG-----DE--VSLLEGEAVEVIHKLLDG 115
Query: 139 WWQAQLIEPTGPMGLVPSQELEE 161
WW +I G PS L++
Sbjct: 116 WW---VIRKDDVTGYFPSMYLQK 135
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 49.8 bits (119), Expect = 4e-08
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 85 PQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ--KDPNWWQA 142
G + + ++ L+ + + +E L F G+ ++++ + DP WW+
Sbjct: 5 SSGLSNGQGSRVLHVVQTLYPFSSVTE-----EE--LNFEKGETMEVIEKPENDPEWWKC 57
Query: 143 QLIEPTGPMGLVPS 156
+ G +GLVP
Sbjct: 58 KNA--RGQVGLVPK 69
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 49.8 bits (119), Expect = 5e-08
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 75 SDGNIQFTIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ 134
S G + V L+ Y+ + + L+F G+ QI+N
Sbjct: 5 SSGASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTE-----D--LSFKKGERFQIINN 57
Query: 135 KDPNWWQAQLIEPTGPMGLVPSQELEERRKAFVPPEADYVHKIG 178
+ +WW+A+ I TG G +PS + + E Y K+G
Sbjct: 58 TEGDWWEARSI-ATGKSGYIPSNYVVPAD--SIQAEEWYFGKMG 98
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 48.5 bits (116), Expect = 5e-08
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 90 ASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTG 149
L + ++ C + + + E L+ D+L++L+ WW+ + P G
Sbjct: 1 GPLGSGALKWVLCNYDFQARNS-----SE--LSVKQRDVLEVLDDSR-KWWKVRD--PAG 50
Query: 150 PMGLVPS 156
G VP
Sbjct: 51 QEGYVPY 57
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 48.5 bits (116), Expect = 6e-08
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDP-----NWWQAQLIEPTGPMGL 153
+ R L+ + P+ E+ +A GD++ IL++KDP +WW+ + G +G
Sbjct: 9 FARALYDFVPENP------EMEVALKKGDLMAILSKKDPLGRDSDWWKVRT--KNGNIGY 60
Query: 154 VPS 156
+P
Sbjct: 61 IPY 63
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 48.8 bits (117), Expect = 6e-08
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ L+ Y K +E + GDIL +LN + +WW+ ++ G VP+
Sbjct: 7 LVLALYDYQEKSP-----RE--VTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPA 54
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 48.5 bits (116), Expect = 6e-08
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLV 154
V ++ ++ D E L F G+++ + ++D WW + G+
Sbjct: 8 NKVRRVKTIYDCQADNDD-----E--LTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVF 60
Query: 155 PS 156
P
Sbjct: 61 PV 62
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 48.0 bits (115), Expect = 9e-08
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS-- 156
+ L+ Y K E L GDIL +LN + +WW+ ++ G G VP+
Sbjct: 8 LVLVLYDYQEKSPR-----E--LTVKKGDILTLLNSTNKDWWKIEV---NGRQGFVPAAY 57
Query: 157 -QELE 160
++L+
Sbjct: 58 LKKLD 62
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 48.0 bits (115), Expect = 9e-08
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
R LF + P+ +E L G+I+ +L + + NW G GLVP
Sbjct: 9 AHRVLFGFVPETK-----EE--LQVMPGNIVFVLKKGNDNWATVMF---NGQKGLVPC 56
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 47.6 bits (114), Expect = 1e-07
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
R L+T++P+ E L F GDI+ I + D NWW+ G GL+P
Sbjct: 6 SGKVFRALYTFEPRTP-----DE--LYFEEGDIIYITDMSDTNWWKGTS---KGRTGLIP 55
Query: 156 S 156
S
Sbjct: 56 S 56
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 47.1 bits (113), Expect = 1e-07
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
V + R L+ ++ E+ E L F G+++++L+ +P+WW +L +GL P+
Sbjct: 1 VRWARALYDFEALEED-----E--LGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPA 50
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 47.7 bits (114), Expect = 1e-07
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 84 APQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQ 143
GD P + + ++ Y ++ E L+F G I+ ++ + D W++
Sbjct: 4 GSSGDPPWAPRSYLEKVVAIYDYTKDKED-----E--LSFQEGAIIYVIKKNDDGWYEGV 56
Query: 144 LIEPTGPMGLVPS 156
+ G GL P
Sbjct: 57 M---NGVTGLFPG 66
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 47.9 bits (114), Expect = 1e-07
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 82 TIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQ 141
++ +L + + + Y ++D +E L + L +L+ WW+
Sbjct: 16 SLKKGSLVKNLHMTEEVIVIAKWDYTAQQD-----QE--LDIKKNERLWLLDDSK-TWWR 67
Query: 142 AQLIEPTGPMGLVPSQELEER 162
+ G VPS +E +
Sbjct: 68 VR--NAANRTGYVPSNYVERK 86
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 47.2 bits (113), Expect = 2e-07
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
Y++ L+ + + E L+ ++L++L WW+ + +G G VP
Sbjct: 7 GKYVKILYDFTARNA-----NE--LSVLKDEVLEVLEDGR-QWWKLR--SRSGQAGYVPC 56
Query: 157 QELEE 161
L E
Sbjct: 57 NILGE 61
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 48.6 bits (116), Expect = 2e-07
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
Y L+ + ++ E L G+ L I + W+ A+ I G GLVP
Sbjct: 4 GSLYAIVLYDFKAEKA-----DE--LTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVP 56
Query: 156 S 156
Sbjct: 57 V 57
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 46.9 bits (112), Expect = 2e-07
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
M+ L+ ++ + +E L G+ L++L+ WW + G G +PS
Sbjct: 7 GLKMQVLYEFEARNP-----RE--LTVVQGEKLEVLDHSK-RWWLVK--NEAGRSGYIPS 56
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 49.8 bits (118), Expect = 2e-07
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 75 SDGNIQFTIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ 134
+ + A+ + + F + + ++ L F G+ L+IL++
Sbjct: 96 LNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERET-------DLPFEQGERLEILSK 148
Query: 135 KDPNWWQAQLIEPTGPMGLVPS 156
+ +WW+A+ G GLVP+
Sbjct: 149 TNQDWWEARNA--LGTTGLVPA 168
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 46.8 bits (112), Expect = 2e-07
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
+R L+ ++ ED+ E L F HG+++ +L+ D NWWQ + GL P
Sbjct: 4 MARRVRALYDFEAVEDN-----E--LTFKHGELITVLDDSDANWWQGEN---HRGTGLFP 53
Query: 156 S 156
S
Sbjct: 54 S 54
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 46.8 bits (112), Expect = 2e-07
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ + LF Y P+ + E L GDI+ I + + WW L +GL PS
Sbjct: 1 MRQCKVLFEYIPQNED-----E--LELKVGDIIDINEEVEEGWWSGTL---NNKLGLFPS 50
Query: 157 ---QELEERRK 164
+ELE
Sbjct: 51 NFVKELELEHH 61
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 51.9 bits (125), Expect = 2e-07
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 15 GLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK 74
G+ ++ + G +++ + G+ + G LK GDVI+G N + V + +L+ +
Sbjct: 370 GIEGAEMSNKGKDQG-VVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAELRKVLDS 427
Query: 75 SDGNIQFTIAPQGDDASLPIK 95
+ I L ++
Sbjct: 428 KPSVLALNIQRGDSTIYLLMQ 448
Score = 42.7 bits (101), Expect = 2e-04
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEV--VKSDGNIQFTIAPQGDD 89
++++L S K G +K GDVI +NG+ +SS L+ +V + + + G
Sbjct: 289 FVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQ 347
Query: 90 ASLPIK 95
++ ++
Sbjct: 348 VNVNLE 353
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 48.1 bits (115), Expect = 2e-07
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQGDDAS 91
+ + S + G ++ GD+I+ VNG + +LQ E V ++ + + DD
Sbjct: 38 YVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDSSELQ-EAVLTESPLLLEVRRGNDDLL 95
Query: 92 LPIKP 96
I P
Sbjct: 96 FSIAP 100
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 46.9 bits (112), Expect = 2e-07
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+ ++P+ D+ E L GDI+ I + W A+ E GLVP
Sbjct: 9 VALYDFEPENDN-----E--LRLAEGDIVFISYKHGQGWLVAEN-ESGSKTGLVPE 56
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 47.0 bits (112), Expect = 2e-07
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
+ ++ + + E LAF GD++++L+ + +WW Q+ G P
Sbjct: 9 SIVSAEAVWDHVTMANR-----E--LAFKAGDVIKVLDASNKDWWWGQI---DDEEGWFP 58
Query: 156 S 156
+
Sbjct: 59 A 59
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 46.9 bits (112), Expect = 2e-07
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPS 156
+ + + E L GD + IL+ K +WW QL++ +G GLVP+
Sbjct: 8 RGIVQYDFMAESQD-----E--LTIKSGDKVYILDDKKSKDWWMCQLVD-SGKSGLVPA 58
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 46.9 bits (112), Expect = 3e-07
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 16 LSPCGLTVEQDANGNL-------IIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPE 66
+ P +T+ +D+ G++ I I+ S + G L I +NG+NV
Sbjct: 3 MDPRTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDS 61
Query: 67 DLQIEVVKSDGNIQFTIAP 85
+ + S + TI P
Sbjct: 62 QIADILSTSGTVVTITIMP 80
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 46.9 bits (112), Expect = 3e-07
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 90 ASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK-DPNWWQAQLIEPT 148
+ + + + L F GD+L I+ DPNW++A+
Sbjct: 4 IQASWPSGTECIAKYNFHGTAEQ-----D--LPFCKGDVLTIVAVTKDPNWYKAKN--KV 54
Query: 149 GPMGLVPSQELEER 162
G G++P+ +++R
Sbjct: 55 GREGIIPANYVQKR 68
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 46.9 bits (112), Expect = 3e-07
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS-- 156
+ L ++ +D E L F DI+ I++QKD + W +L G G P+
Sbjct: 9 RAKALLDFERHDDD-----E--LGFRKNDIITIISQKDEHCWVGEL---NGLRGWFPAKF 58
Query: 157 -QELEERRKAFVPPEAD 172
+ L+ER K +
Sbjct: 59 VEVLDERSKEYSIASGP 75
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 46.5 bits (111), Expect = 3e-07
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ--KDPNWWQAQLIEPTGPMGLV 154
+ ++ L+ + + +E L F G+ ++++ + DP WW+ + G +GLV
Sbjct: 6 LHVVQTLYPFSSVTE-----EE--LNFEKGETMEVIEKPENDPEWWKCKNA--RGQVGLV 56
Query: 155 PS 156
P
Sbjct: 57 PK 58
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 46.0 bits (110), Expect = 3e-07
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
Y++ LF +DP+ED E L F GD + +++ DPNWW+ G G+ P
Sbjct: 2 PTYVQALFDFDPQEDG-----E--LGFRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPR 51
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 47.0 bits (112), Expect = 3e-07
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 84 APQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQ 143
G + + +T+ + E L+F G+ + ++ + + NW++ +
Sbjct: 4 GSSGKPPTYQVLEYGEAVAQYTFKGDLEV-----E--LSFRKGEHICLIRKVNENWYEGR 56
Query: 144 LIEPTGPMGLVPS 156
I TG G+ P+
Sbjct: 57 -ITGTGRQGIFPA 68
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 46.5 bits (111), Expect = 3e-07
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLV 154
++ F + + E L+ GDI+ + ++ WW+ L G G
Sbjct: 8 SHQLIVKARFNFKQTNE-----DE--LSVCKGDIIYVTRVEEGGWWEGTL---NGRTGWF 57
Query: 155 PS---QELEERRKA 165
PS +E++ ++
Sbjct: 58 PSNYVREIKSSERS 71
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 46.2 bits (110), Expect = 4e-07
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
F Y + +E L+F G L + + +WW+ + G GL+P
Sbjct: 8 EPIEAIAKFDYVGRTA-----RE--LSFKKGASLLLYQRASDDWWEGRH---NGIDGLIP 57
Query: 156 S 156
Sbjct: 58 H 58
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 47.0 bits (112), Expect = 4e-07
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SP 65
L K G L GL++ + G IA ++ G + L+ GD+I NG+ +
Sbjct: 8 LMKKAGKEL---GLSLSPNEIG-CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF 63
Query: 66 EDLQIEVVKSDGNIQFTIA--PQGDDASLPIKP 96
+ ++G + + G S + P
Sbjct: 64 QVCYALFKGANGKVSMEVTRPKPGSGGSGSLVP 96
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 48.1 bits (114), Expect = 4e-07
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 20/139 (14%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLV 154
+ + + ++ S E L+ GDI++ILN+K WW+ ++ G +G
Sbjct: 4 TFGTAKARYDFCARDRS-----E--LSLKEGDIIKILNKKGQQGWWRGEI---YGRIGWF 53
Query: 155 PSQELEERRKAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEE 214
PS +EE ++P L N + E+
Sbjct: 54 PSNYVEEDYSEYLPETGGGSGS---------SMTYKLILNGKTLKGETTTEAVDAATAEK 104
Query: 215 NGQNYWFTSREVMERDIQD 233
+ Y + E D
Sbjct: 105 VFKQYANDNGVDGEWTYDD 123
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 45.6 bits (109), Expect = 6e-07
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPS 156
+ + + E L GD + IL+ K +WW QL++ +G GLVP+
Sbjct: 6 IVQYDFMAESQD-----E--LTIKSGDKVYILDDKKSKDWWMCQLVD-SGKSGLVPA 54
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 45.7 bits (109), Expect = 6e-07
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
F ++ E ++F G+ + +L Q D NW++ + I T G+ P
Sbjct: 9 EAIAKFNFNGDTQV-----E--MSFRKGERITLLRQVDENWYEGR-IPGTSRQGIFPI 58
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 45.2 bits (108), Expect = 6e-07
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+ ++P+ D+ E L GDI+ I + W A+ E GLVP
Sbjct: 5 VALYDFEPENDN-----E--LRLAEGDIVFISYKHGQGWLVAEN-ESGSKTGLVPE 52
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 46.2 bits (110), Expect = 6e-07
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS-- 156
+ L+++ ++D E L GDI+ I +K+ WW L G G P+
Sbjct: 9 LCKALYSFQARQD-----DE--LNLEKGDIVIIHEKKEEGWWFGSL---NGKKGHFPAAY 58
Query: 157 -QELEERRKAFVPPEA 171
+EL +
Sbjct: 59 VEELPSNAGNTATKAS 74
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 46.3 bits (110), Expect = 6e-07
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 82 TIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQ 141
+ + L+ Y+ + L+F GD + +L + WW+
Sbjct: 10 SHNSNTPGIREAGSEDIIVVALYDYEAIHHE-----D--LSFQKGDQMVVLE-ESGEWWK 61
Query: 142 AQLIEPTGPMGLVPS 156
A+ + T G +PS
Sbjct: 62 ARSLA-TRKEGYIPS 75
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 45.9 bits (109), Expect = 6e-07
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 13/86 (15%)
Query: 87 GDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLI- 145
G S Y + Y+ E++ F G +++L + WW Q++
Sbjct: 1 GSSGSSGNLKDVY-VSIADYEGDEETA--------GFQEGVSMEVLERNPNGWWYCQILD 51
Query: 146 EPTGPMGLVPSQELEERRKAFVPPEA 171
G VPS LE++ P +
Sbjct: 52 GVKPFKGWVPSNYLEKKNS---GPSS 74
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 45.7 bits (109), Expect = 7e-07
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 90 ASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTG 149
S R L+ Y + E L + GDIL+++ + + WW + G
Sbjct: 1 GSSGSSGAQEYRALYDYTAQNPD-----E--LDLSAGDILEVILEGEDGWWTVER---NG 50
Query: 150 PMGLVPSQELEE 161
G VP LE+
Sbjct: 51 QRGFVPGSYLEK 62
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 45.4 bits (108), Expect = 7e-07
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+ Y E L + GDI+++ + + +WW + G G P+
Sbjct: 10 VALYDYTANRSD-----E--LTIHRGDIIRVFFKDNEDWWYGSI--GKGQEGYFPA 56
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 49.9 bits (120), Expect = 7e-07
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQGDDAS 91
+I +++ GS + G L+ GDVIL + + V + ED+ E V++ + I + +
Sbjct: 259 LIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDVY-EAVRTQSQLAVQIRRGRETLT 316
Query: 92 LPIKP 96
L + P
Sbjct: 317 LYVTP 321
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 45.3 bits (108), Expect = 8e-07
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
R L+ ++P+ + E L F GDI+ + NQ D NW++ L G G P
Sbjct: 9 CCRALYDFEPENE-----GE--LGFKEGDIITLTNQIDENWYEGML---HGHSGFFPI 56
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 44.8 bits (107), Expect = 8e-07
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
P ++ L+ YD + E L F GD + + + WW+ +L G G VP
Sbjct: 2 PGIQVKALYDYDAQTGD-----E--LTFKEGDTIIVHQKDPAGWWEGEL---NGKRGWVP 51
Query: 156 S 156
+
Sbjct: 52 A 52
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 45.4 bits (108), Expect = 8e-07
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLV 154
+R ++ ++ ED+ E L F G+I+ +L+ DPNWW+ + +GL
Sbjct: 15 HEARKVRAIYDFEAAEDN-----E--LTFKAGEIITVLDDSDPNWWKGET---HQGIGLF 64
Query: 155 PS 156
PS
Sbjct: 65 PS 66
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 45.5 bits (108), Expect = 9e-07
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIE--PTGPMGLVPS 156
L+ + + D E L+F GD+ + +++ WW L E G VP
Sbjct: 16 LWDFKSRTDE-----E--LSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPH 64
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 44.9 bits (107), Expect = 9e-07
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
P+ + + L GD++ I ++ W +L++ G VP
Sbjct: 1 PMF--EAAYDFPGSGS------PSELPLKKGDVIYITREEPSGWSLGKLLD-GSKEGWVP 51
Query: 156 SQELEE 161
+ ++
Sbjct: 52 TAYMKP 57
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 45.8 bits (109), Expect = 1e-06
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 20 GLTV--EQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKS 75
G+T+ ++ +II+ + G L ++ G + +GD IL +N ++ + I +++
Sbjct: 19 GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEA-IHLLQM 77
Query: 76 DGN-IQFTIAPQGD 88
G + I Q D
Sbjct: 78 AGETVTLKIKKQTD 91
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 45.9 bits (109), Expect = 1e-06
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLV 154
+ + F+Y P+ D E L GDI++++ + + WW+ L G G+
Sbjct: 16 RRRRRCQVAFSYLPQND-----DE--LELKVGDIIEVVGEVEEGWWEGVL---NGKTGMF 65
Query: 155 PS---QELEERRKAFVPPEADY 173
PS +EL + ++
Sbjct: 66 PSNFIKELSGESDELGISQDEH 87
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 44.7 bits (106), Expect = 1e-06
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQL 144
+ L+ Y K E + GDIL +LN + +WW+ ++
Sbjct: 17 SGTGKELVLALYDYQEKSPR-----E--VTMKKGDILTLLNSTNKDWWKVEV 61
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 45.0 bits (107), Expect = 1e-06
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ + L+ YD +D ++F +ILQ+ + WW+A+ G G++PS
Sbjct: 5 IYKAKALYPYDADDDD-----AYEISFEQNEILQVS-DIEGRWWKAR--RANGETGIIPS 56
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 45.0 bits (107), Expect = 1e-06
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
+ + Y +E+S E L+ G+++ ++ + + WW + G VP
Sbjct: 7 GLEQYVVVSNYKKQENS-----E--LSLQAGEVVDVIEKNESGWWFVST---SEEQGWVP 56
Query: 156 SQELEE 161
+ LE
Sbjct: 57 ATYLEA 62
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 44.9 bits (107), Expect = 1e-06
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLV 154
+P C R L+ ++P+ E L F GDI+ + NQ D NW++ + G G
Sbjct: 3 QPCC--RGLYDFEPENQ-----GE--LGFKEGDIITLTNQIDENWYEGMI---HGESGFF 50
Query: 155 PS 156
P
Sbjct: 51 PI 52
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 44.9 bits (107), Expect = 1e-06
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQE 158
+ + Y ++D +E L + L +L+ WW+ + G VPS
Sbjct: 6 IVIAKWDYTAQQD-----QE--LDIKKNERLWLLDDSK-TWWRVRNA--ANRTGYVPSNY 55
Query: 159 LEERR 163
+E +
Sbjct: 56 VERKL 60
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 46.4 bits (110), Expect = 1e-06
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS-PEDLQIE 71
GL+ C T ++D G + I+ I S+ K G ++ GD I+ +NG V + E + +
Sbjct: 33 KLGLTVCYRTDDEDDIG-IYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALL 91
Query: 72 VVKSDGNIQFTIA 84
+ + N IA
Sbjct: 92 TSEENKNFSLLIA 104
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 44.5 bits (106), Expect = 1e-06
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMG 152
P+ + F Y + +E L+F G L + ++ +WW+ + G G
Sbjct: 2 PLGSPEFAIAKFDYVGRSA-----RE--LSFKKGASLLLYHRASEDWWEGRH---NGIDG 51
Query: 153 LVPS 156
LVP
Sbjct: 52 LVPH 55
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 44.9 bits (107), Expect = 1e-06
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L TY E L G+ +++L + W + + TG G+ PS
Sbjct: 9 MFVALHTYSAHRPE-----E--LDLQKGEGIRVLGKYQDGWLKGLSLL-TGRTGIFPS 58
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 44.5 bits (106), Expect = 1e-06
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ + YD ED+ E L F D + + D +WW +L E G GL PS
Sbjct: 2 WATAEYDYDAAEDN-----E--LTFVENDKIINIEFVDDDWWLGEL-EKDGSKGLFPS 51
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 44.6 bits (106), Expect = 1e-06
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMG 152
P F ++ E ++F G+ + +L Q D NW++ ++ T G
Sbjct: 4 PFTGEA--IAKFNFNGDTQV-----E--MSFRKGERITLLRQVDENWYEGRI-PGTSRQG 53
Query: 153 LVPS 156
+ P
Sbjct: 54 IFPI 57
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 44.5 bits (106), Expect = 1e-06
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+ + P+E+ + L GDI+ +L + +WW+ ++ +G P+
Sbjct: 11 VALYKFVPQENE-----D--LEMRPGDIITLLEDSNEDWWKGKI---QDRIGFFPA 56
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 44.6 bits (106), Expect = 1e-06
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
+ F Y +++ +E L + L +L+ +WW+ + G VP
Sbjct: 6 EEVVVVAKFDYVAQQE-----QE--LDIKKNERLWLLDDSK-SWWRVR--NSMNKTGFVP 55
Query: 156 S 156
S
Sbjct: 56 S 56
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 44.5 bits (106), Expect = 1e-06
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMG 152
+ LF Y P+ + E L GDI+ I + + WW L +G
Sbjct: 3 LGSKKRQCKVLFEYIPQNED-----E--LELKVGDIIDINEEVEEGWWSGTL---NNKLG 52
Query: 153 LVPS 156
L PS
Sbjct: 53 LFPS 56
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 49.2 bits (118), Expect = 1e-06
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 10 KILGTGLSPCGLTVEQDANGN--LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPED 67
+++ L L+ Q +G + I ++ GS + G L+ DVI+GVN + V+S +
Sbjct: 342 EMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAE 400
Query: 68 LQIEVVKSDGNIQFTIAPQGDDASLPIK 95
++ + I I + L ++
Sbjct: 401 MRKVLAAKPAIIALQIVRGNESIYLLMR 428
Score = 42.6 bits (101), Expect = 2e-04
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEV--VKSDGNIQFTIAPQGDD 89
++ +L GS K G +K GD+I +NG+ ++S +L+ + + ++ + G
Sbjct: 266 FVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKP 324
Query: 90 ASLPIK 95
+ +
Sbjct: 325 LEVEVT 330
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 45.1 bits (107), Expect = 2e-06
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKSDGNIQFTIAP 85
II ++ G + ++ G ++VG I+ +NG++V E + + + G I P
Sbjct: 34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 88
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 44.1 bits (105), Expect = 2e-06
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+++ LF ++P+E E LAF GD++ ++N+ DPNWW+ QL G+ PS
Sbjct: 4 FVQALFDFNPQESG-----E--LAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPS 51
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 44.5 bits (106), Expect = 2e-06
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS-- 156
+ F+Y P+ D E L GDI++++ + + WW+ L G G+ PS
Sbjct: 9 RCQVAFSYLPQNDD-----E--LELKVGDIIEVVGEVEEGWWEGVL---NGKTGMFPSNF 58
Query: 157 -QELEE 161
+EL
Sbjct: 59 IKELSG 64
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 44.1 bits (105), Expect = 2e-06
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
R F + + KE L GDI+ I Q D NW++ + G +G+ P
Sbjct: 11 RAKFDFKAQTL-----KE--LPLQKGDIVYIYKQIDQNWYEGEH---HGRVGIFPR 56
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLV 154
+R F + + E L+F+ GD++ + ++ WW+ G G
Sbjct: 4 NSQLVVRAKFNFQQTNE-----DE--LSFSKGDVIHVTRVEEGGWWEGTH---NGRTGWF 53
Query: 155 PS 156
PS
Sbjct: 54 PS 55
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 44.1 bits (105), Expect = 2e-06
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
R F + + KE L GDI+ I + D NW + + G +G+ P+
Sbjct: 5 RLKFDFQAQSP-----KE--LTLQKGDIVYIHKEVDKNWLEGEH---HGRLGIFPA 50
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 47.1 bits (112), Expect = 2e-06
Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 3 HPPHPLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
H P K + G++ + + + L+I+ I GS+ + G L++GD +L ++ +
Sbjct: 110 HVKLPKKHSVELGITISSPSSRKPGDP-LVISDIKKGSVAHRTGTLELGDKLLAIDNIRL 168
Query: 63 S--SPEDLQIEVVK-SDGNIQFTIAPQGD 88
S ED +++++ + ++ I D
Sbjct: 169 DSCSMEDA-VQILQQCEDLVKLKIRKDED 196
Score = 44.4 bits (105), Expect = 2e-05
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS-PEDLQIEVVKSDGN 78
+ + + +I+ I A S ++ GVL++GD ++ +NG + ++++
Sbjct: 27 SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI 86
Query: 79 -IQFTIAPQGDDASLPIKPVCYMRCLFTYDPKED 111
+ T+ + D A I +
Sbjct: 87 TSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVE 120
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 44.2 bits (105), Expect = 2e-06
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
R ++ Y P+ + E L GD + ++ Q D W+ T G P
Sbjct: 9 PYRAMYQYRPQNED-----E--LELREGDRVDVMQQCDDGWFVGVS-RRTQKFGTFPG 58
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 43.4 bits (103), Expect = 3e-06
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMG 152
P+ V R F + + E L+F+ GD++ + ++ WW+ G G
Sbjct: 2 PLGSVV--RAKFNFQQTNED-----E--LSFSKGDVIHVTRVEEGGWWEGTH---NGRTG 49
Query: 153 LVPS 156
PS
Sbjct: 50 WFPS 53
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 43.4 bits (103), Expect = 3e-06
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
Y + + + + E L+ D+L+IL+ + WW+ + +G G VP+
Sbjct: 3 YAKSKYDFVARNS-----SE--LSVMKDDVLEILDDRR-QWWKVR--NASGDSGFVPN 50
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 43.9 bits (104), Expect = 3e-06
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 10/70 (14%)
Query: 87 GDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIE 146
G S + FT P + L GDI+ I+++ W L
Sbjct: 1 GSSGSSGFCGRARVHTDFTPSPYDTD-------SLKLKKGDIIDIISKPPMGTWMGLL-- 51
Query: 147 PTGPMGLVPS 156
+G
Sbjct: 52 -NNKVGTFKF 60
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 44.6 bits (106), Expect = 3e-06
Identities = 8/53 (15%), Positives = 21/53 (39%)
Query: 26 DANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGN 78
+ L +++I G ++ GD ++ +NG + + ++K
Sbjct: 32 EHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILIKGSFR 84
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 43.3 bits (103), Expect = 3e-06
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ F Y + D E L + G+I+ + ++D WW+ Q+ G GL P
Sbjct: 1 MVEAIVEFDYQAQHDD-----E--LTISVGEIITNIRKEDGGWWEGQI---NGRRGLFPD 50
Query: 157 ---QELEE 161
+E+++
Sbjct: 51 NFVREIKK 58
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 43.8 bits (104), Expect = 3e-06
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 86 QGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLI 145
D +P + L+ ++P+ D E L F GD++ + NQ D NW++ L
Sbjct: 2 AMDPEFMPPLDQPSCKALYDFEPEND-----GE--LGFREGDLITLTNQIDENWYEGML- 53
Query: 146 EPTGPMGLVPS 156
G G P
Sbjct: 54 --HGQSGFFPL 62
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 44.2 bits (105), Expect = 3e-06
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 8 LKKILGTGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
++K GL G++++ ++ ++I++I G D+ L VGD IL VNGE++SS
Sbjct: 10 VRKADAGGL---GISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 44.2 bits (105), Expect = 3e-06
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKSDGNIQFTIA 84
+ + + L K G L GD+IL +NG S D + + KS G +Q +
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVL 78
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 43.9 bits (104), Expect = 3e-06
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 10/73 (13%)
Query: 84 APQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQ 143
G L+ Y D E ++F+ DI+ + D WW+
Sbjct: 4 GSSGTYDEYENDLGITAVALYDYQAAGDD-----E--ISFDPDDIITNIEMIDDGWWRGV 56
Query: 144 LIEPTGPMGLVPS 156
G GL P+
Sbjct: 57 C---KGRYGLFPA 66
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 43.3 bits (103), Expect = 4e-06
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
+ L+ YD ++ E L+FN DI+ I+ + WW +L G GL P
Sbjct: 4 GSPQCKALYAYDAQDTD-----E--LSFNANDIIDIIKEDPSGWWTGRL---RGKQGLFP 53
Query: 156 S 156
+
Sbjct: 54 N 54
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 44.1 bits (104), Expect = 4e-06
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGP---M 151
+ +R L + D L GD++ +L Q W+ + E +
Sbjct: 16 RGSLKVRALKDFWNLHD------PTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRI 69
Query: 152 GLVPS---QELEER 162
G P + + +R
Sbjct: 70 GYFPPGIVEVVSKR 83
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 44.7 bits (106), Expect = 4e-06
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 28 NGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G ++++ + G ++ G + GD I+ +NG+ V+
Sbjct: 42 VGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVT 77
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 43.8 bits (104), Expect = 4e-06
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 85 PQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQL 144
+ LF + E L F GD++ +L++ + +W + +
Sbjct: 6 HHHHHHHMDRMAAPRAEALFDFTGNSK-----LE--LNFKAGDVIFLLSRINKDWLEGTV 58
Query: 145 IEPTGPMGLVPS 156
G G+ P
Sbjct: 59 ---RGATGIFPL 67
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 43.3 bits (103), Expect = 4e-06
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 11/59 (18%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPS 156
L+ + D+ L+ G+ L++L + W +AQ G VPS
Sbjct: 7 LFVALYDFVASGDN-----T--LSITKGEKLRVLGYNHNGEWCEAQT---KNGQGWVPS 55
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 42.9 bits (102), Expect = 4e-06
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ Y+ L+ +DP++D L GD +Q+L + P W++ G G+ P+
Sbjct: 2 MEYVEALYQFDPQQDG-------DLGLKPGDKVQLLEKLSPEWYKGSC---NGRTGIFPA 51
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 47.7 bits (114), Expect = 4e-06
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 11 ILGTGLSPCGLTVEQDANGN-LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ 69
+ G L N + + S + G ++ GD+I+ N + V+ + LQ
Sbjct: 367 LYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTDVKSLQ 425
Query: 70 IEVVKSDGNIQFTIAPQGDDASLPI 94
+ + + L +
Sbjct: 426 TIAQEKKKELLVQVLRGPGSMYLLV 450
Score = 44.2 bits (105), Expect = 5e-05
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEV 72
+ +D G L+ +++ S + G LK GD+I +N ++ ++ +
Sbjct: 274 AMGYPEDFQGALV-SQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTI 324
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 43.0 bits (102), Expect = 5e-06
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ L Y K + L FN GD++ + Q D NW+Q ++ G G+ P+
Sbjct: 9 RAKALCNYRGKNP-----GD--LKFNKGDVILLRRQLDENWYQGEI---NGVSGIFPA 56
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 43.1 bits (102), Expect = 5e-06
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEE 161
L GDI+ I + W A+L++ G VP+ +
Sbjct: 20 LPLKKGDIVFISRDEPSGWSLAKLLD-GSKEGWVPTAYMTP 59
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 43.5 bits (103), Expect = 5e-06
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 16/89 (17%)
Query: 83 IAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN-WWQ 141
+ P G Y R L Y+ + SLLP F DI+ I + N W+
Sbjct: 1 MGPLGSPEFAK-----YARALKDYNVSDTSLLP-------FKRNDIITITFKDQENKWFM 48
Query: 142 AQLIEPTGPMGLVPSQELEERRKAFVPPE 170
QL G G P +E PP+
Sbjct: 49 GQL---NGKEGSFPVDHVEILLSDVPPPQ 74
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 43.0 bits (102), Expect = 5e-06
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMG 152
P + + L+ YD + L+F G+ +++L + WW+A+ + T G
Sbjct: 3 PEEQGDIVVALYPYDGIHPD-----D--LSFKKGEKMKVLE-EHGEWWKAKSLL-TKKEG 53
Query: 153 LVPS 156
+PS
Sbjct: 54 FIPS 57
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 47.3 bits (113), Expect = 5e-06
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFTIAPQGDDAS 91
I ++ + + G LK DVI+ +NG++V S D+ +V+K + + + +D
Sbjct: 257 YIIEVIPDTPAEAGG-LKENDVIISINGQSVVSANDVS-DVIKRESTLNMVVRRGNEDIM 314
Query: 92 LPIKP 96
+ + P
Sbjct: 315 ITVIP 319
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 43.1 bits (102), Expect = 6e-06
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 13/54 (24%)
Query: 104 FTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQ 157
++ +E + GDIL +LN + +WW+ ++ G VP+
Sbjct: 9 YSAGGRE----------VTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAA 49
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 44.4 bits (105), Expect = 6e-06
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENV 62
L K GL G V++ + + I+ ++ G ++ G+++ GD+IL VN +
Sbjct: 7 LFKRKVGGL---GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPL 59
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 43.0 bits (102), Expect = 6e-06
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 11/63 (17%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGL 153
P + L+ + DS E L+F G + ++ +P W + L G GL
Sbjct: 8 TPFRKAKALYACKAEHDS-----E--LSFTAGTVFDNVHPSQEPGWLEGTL---NGKTGL 57
Query: 154 VPS 156
+P
Sbjct: 58 IPE 60
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 42.6 bits (101), Expect = 6e-06
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
R ++ Y +++ E ++F GD + + D W + + TG G++P+
Sbjct: 10 RAMYDYSAQDED-----E--VSFRDGDYIVNVQPIDDGWMYGTV-QRTGRTGMLPA 57
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 42.7 bits (101), Expect = 7e-06
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ L +Y+P D + L F G+ L+IL + WW+AQ + TG G +P
Sbjct: 8 LVIALHSYEPSHDG-----D--LGFEKGEQLRILE-QSGEWWKAQSLT-TGQEGFIPF 56
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 42.5 bits (101), Expect = 7e-06
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
LF + E L F GD++ +L++ + +W + + G G+ P
Sbjct: 6 RAEALFDFTGNSK-----LE--LNFKAGDVIFLLSRINKDWLEGTV---RGATGIFPL 53
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 43.2 bits (102), Expect = 7e-06
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 10/71 (14%)
Query: 86 QGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLI 145
GD F Y + + E L+ G + ++ + WW+
Sbjct: 6 SGDPGERLYDLNMPAYVKFNYMAERE-----DE--LSLIKGTKVIVMEKCSDGWWRGSY- 57
Query: 146 EPTGPMGLVPS 156
G +G PS
Sbjct: 58 --NGQVGWFPS 66
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 45.5 bits (108), Expect = 7e-06
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 1 MEHPPHPLKKILGTGLSPCGLTVEQDANGN--LIIARILAGSLIDKQGVLKVGDVILGVN 58
+K G G S G Q G+ + + +I+ G K G L++GD IL VN
Sbjct: 100 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 159
Query: 59 GENVS--SPEDLQIEVVKSDGN-IQFTIAPQGDDASL 92
+ ED + +K+ + + +A + ++
Sbjct: 160 SVGLEDVMHEDA-VAALKNTYDVVYLKVAKPSNAETM 195
Score = 42.4 bits (100), Expect = 9e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
+ I +I+ G + G L+V D IL VN +V
Sbjct: 37 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 70
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 43.2 bits (102), Expect = 7e-06
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 90 ASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILN--QKDPNWWQAQLIEP 147
S Y+ L +Y SL L+F+ GD++++L +P W
Sbjct: 1 GSSGSSGSGYVIALRSYITDNCSL-------LSFHRGDLIKLLPVATLEPGWQFGSA--- 50
Query: 148 TGPMGLVPS 156
G GL P+
Sbjct: 51 GGRSGLFPA 59
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 43.4 bits (102), Expect = 7e-06
Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGN--IQFTIAPQGDD 89
++ I A S+ + + G + V+G + +++++V G+ T+AP G D
Sbjct: 5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSD 63
Query: 90 A----SLPIKPVCYMRCLFTYDPKEDSLLPCKEIGL 121
L ++ + ++P ++ + +G+
Sbjct: 64 QRRDVKLDLRH-------WAFEPDKEDPV--SSLGI 90
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 42.4 bits (100), Expect = 7e-06
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+R + Y D+ E ++F GD+ + N+ + W T GL+
Sbjct: 7 RVRAILPYTKVPDT----DE--ISFLKGDMFIVHNELEDGWMWVTN-LRTDEQGLIVE 57
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 46.7 bits (110), Expect = 8e-06
Identities = 20/149 (13%), Positives = 51/149 (34%), Gaps = 13/149 (8%)
Query: 80 QFTIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNW 139
+ A+ + + F + + ++ L F G+ L+IL++ + +W
Sbjct: 130 MRVLTEASLLAAYKKPIIEVVVGTFKFTGERET-------DLPFEQGERLEILSKTNQDW 182
Query: 140 WQAQLIEPTGPMGLVPSQELEERRKAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMS 199
W+A+ G GLVP+ ++ + D K + +++S S
Sbjct: 183 WEARN--ALGTTGLVPANYVQI----QMEFHNDRTSKGASQSSIGSSGGGAERFSSASTS 236
Query: 200 RSFPDTTRPMRELEENGQNYWFTSREVME 228
+ + + + + + +
Sbjct: 237 SDNIELQPRLPAKAKVTFDRVPNAYDPTQ 265
Score = 41.4 bits (96), Expect = 3e-04
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 88 DDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEP 147
D+ L + + F P L G + + + ++A+L
Sbjct: 238 DNIELQPRLPAKAKVTFDRVPNAYD-----PTQLRVKKGQTVLVTQKMSNGMYKAEL--- 289
Query: 148 TGPMGLVPS 156
G +G VP
Sbjct: 290 DGQIGSVPH 298
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 42.3 bits (100), Expect = 9e-06
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
L+ Y E + L F G+ + + QKD WW + G+ P
Sbjct: 7 GGEEYIALYPYSSVEPG-----D--LTFTEGEEILVT-QKDGEWWTGSI---GDRSGIFP 55
Query: 156 S 156
S
Sbjct: 56 S 56
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 42.3 bits (100), Expect = 9e-06
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ L+ Y K E L F G ++ ++++ WW+ T PS
Sbjct: 11 KALYDYKAKRSD-----E--LTFCRGALIHNVSKEPGGWWKGDY--GTRIQQYFPS 57
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 42.8 bits (101), Expect = 9e-06
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 12/80 (15%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLI--EPTGPMG 152
+ Y + L+ G ++ IL + WWQ +L G
Sbjct: 5 SSGEIAQVTSAYVASGSE-----Q--LSLAPGQLILILKKNTSGWWQGELQARGKKRQKG 57
Query: 153 LVPS---QELEERRKAFVPP 169
P+ + L + P
Sbjct: 58 WFPASHVKLLGPSSERASGP 77
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 42.3 bits (100), Expect = 1e-05
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 89 DASLPIKP-VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDP-NWWQAQLIE 146
+S ++ + +++Y + E L ++L+++ D +W +A+
Sbjct: 4 GSSGTLRNYPLTCKVVYSYKASQPD-----E--LTIEEHEVLEVIEDGDMEDWVKARN-- 54
Query: 147 PTGPMGLVPS 156
G +G VP
Sbjct: 55 KVGQVGYVPE 64
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 45.3 bits (107), Expect = 1e-05
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SP 65
L K G L GL++ + G IA ++ G + L+ GD+I NG+ +
Sbjct: 119 LMKKAGKEL---GLSLSPNEIG-CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF 174
Query: 66 EDLQIEVVKSDGNIQFTIA 84
+ ++G + +
Sbjct: 175 QVCYALFKGANGKVSMEVT 193
Score = 41.0 bits (96), Expect = 2e-04
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
G+ CG +I + + LK+ D I +NG +
Sbjct: 30 PMGVIVCG-GKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHV 80
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 42.8 bits (101), Expect = 1e-05
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKSDGNIQFTIA-- 84
++ + I SL + G ++ GDV+L +NG S D + + +S G ++ +
Sbjct: 23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 82
Query: 85 PQGDDASLP 93
+ ++P
Sbjct: 83 ERATLLNVP 91
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex,
PDZ tandem, alternative splicing, cell junction,
cytoplasm; 2.30A {Rattus norvegicus}
Length = 200
Score = 45.1 bits (107), Expect = 1e-05
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 8 LKKILGTGLSPCGLTV--EQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
L K GT L GLTV D +G ++ + G + + L VGD I VNG N++
Sbjct: 13 LMKKEGTTL---GLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAK 68
Score = 44.0 bits (104), Expect = 3e-05
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 13 GTGLSPCGLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G G + + I + G D++G +K GD +L V+G +
Sbjct: 118 TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLL 169
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 42.3 bits (100), Expect = 1e-05
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILN-QKDPNWWQAQLIEPTGPMGLVPS 156
+ + D E L+F GDIL++LN + D NW++A+L G G +P
Sbjct: 13 IAKYDFKATAD-----DE--LSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPK 59
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 42.4 bits (100), Expect = 1e-05
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKD----PNWWQAQLIEPTGP 150
+ ++T+ + + E L+ + L+IL KD WW A++ G
Sbjct: 11 EGNQVYFAVYTFKARNPN-----E--LSVSANQKLKILEFKDVTGNTEWWLAEV---NGK 60
Query: 151 MGLVPS 156
G VPS
Sbjct: 61 KGYVPS 66
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 43.5 bits (102), Expect = 1e-05
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMG 152
+ ++ + L+ GD+++I + +W++ LI+ G
Sbjct: 55 SGDKERHGVAIYNFQGSGAP-------QLSLQIGDVVRIQ-ETCGDWYRGYLIKHKMLQG 106
Query: 153 LVPS 156
+ P
Sbjct: 107 IFPK 110
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 42.5 bits (100), Expect = 1e-05
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 75 SDGNIQFTIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ 134
S ++ + P PV +F Y+ D E L GD +Q+L+Q
Sbjct: 9 SGVDLGTENLYFQSMGTTPAGPVW--TAVFDYEAAGDE-----E--LTLRRGDRVQVLSQ 59
Query: 135 -----KDPNWWQAQLIEPTGPMGLVPS 156
D WW QL P+G +G+ PS
Sbjct: 60 DCAVSGDEGWWTGQL--PSGRVGVFPS 84
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 126
Score = 43.7 bits (103), Expect = 1e-05
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
GL V Q+ L I+ ++ G+L+ GDV++ V NV
Sbjct: 41 GLVVIQNGPY-LQISHLINKGAAASDGILQPGDVLISVGHANV 82
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 42.4 bits (100), Expect = 1e-05
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
++ L Y + S F G+ L++++ + WW+A + TG +P
Sbjct: 16 DSDFLAVLSDYPSPDIS-------PPIFRRGEKLRVIS-DEGGWWKAISL-STGRESYIP 66
Query: 156 S 156
Sbjct: 67 G 67
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 42.4 bits (100), Expect = 1e-05
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 17 SPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
G T++ D G + +A + AGS + L+V D I+ +N S
Sbjct: 17 LDFGFTIKWDIPG-IFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSY 62
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 42.0 bits (99), Expect = 2e-05
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN-WWQAQLIEPTGPMGLVPS- 156
++ +F + + L L+F GD+L +L ++ + W + + T G PS
Sbjct: 9 KVKTIFPHTAGNNKTL------LSFAQGDVLTLLIPEEKDGWLYGEH-DTTKARGWFPSS 61
Query: 157 --QELEE 161
+ L
Sbjct: 62 YTKLLSG 68
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 41.4 bits (98), Expect = 2e-05
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ LF+Y+ + ++ L F GDI+ +L++ + W + + G +G+ P
Sbjct: 7 QVEALFSYEATQP-----ED--LEFQEGDIILVLSKVNEEWLEGES---KGKVGIFPK 54
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 41.7 bits (98), Expect = 2e-05
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ GDIL +LN + +WW+ ++ G VP+
Sbjct: 8 VTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPA 40
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 42.8 bits (101), Expect = 2e-05
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 33 IARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKSDGN-IQFTIAPQGDD 89
I RI+ GS D+ LKVGD IL VNG+++ D+ ++++K G + I PQ ++
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADI-VKLIKDAGLSVTLRIIPQ-EE 104
Query: 90 ASLPIKP 96
+ P P
Sbjct: 105 LNSPSGP 111
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 42.3 bits (100), Expect = 2e-05
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 8 LKKILGTGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
L K GL G+++ ++ ++I+ I G D+ G L VGD IL VNG N+
Sbjct: 15 LLKEDHEGL---GISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 70
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 41.5 bits (98), Expect = 2e-05
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 90 ASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILN-QKDPNWWQAQLIEPT 148
+S R ++ + + L G+I+ + N W + +
Sbjct: 2 SSGSSGMATKARVMYDFAAEPG------NNELTVTEGEIITVTNPNVGGGWLEGKN--NK 53
Query: 149 GPMGLVPS 156
G GLVP+
Sbjct: 54 GEQGLVPT 61
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 42.1 bits (99), Expect = 2e-05
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 84 APQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQ 143
G S PV + + + P + LA GDI+++ W+ +
Sbjct: 4 GSSGPLPSTQNGPV-FAKAIQKRVPC-----AYDKTALALEVGDIVKVTRMNINGQWEGE 57
Query: 144 LIEPTGPMGLVPS 156
+ G GL P
Sbjct: 58 V---NGRKGLFPF 67
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L
homolog; PDZ domain, cellular signaling, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 42.9 bits (101), Expect = 2e-05
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
+ + + +I+ I A S ++ GVL++GD ++ +NG
Sbjct: 36 SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTED 80
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 42.0 bits (99), Expect = 2e-05
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ L+ Y + L+F GD + +L + WW+A+ + T G +PS
Sbjct: 5 IVVALYDYVSWSPD-----D--LSFQKGDQMVVLE-ESGEWWKARSLA-TRKEGYIPS 53
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 41.7 bits (98), Expect = 2e-05
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160
Y +DS ++F G +Q+L +++ WW + G PS L
Sbjct: 12 MTCSAYQKVQDS-------EISFPAGVEVQVLEKQESGWWYVRF---GELEGWAPSHYLV 61
Query: 161 ERRKAFVPPEA 171
P
Sbjct: 62 LDENEQPDPSG 72
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 42.4 bits (100), Expect = 2e-05
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNG---ENVSSPEDLQ 69
G+S G + E+ G + I I+ G + G ++ GD++L VN EN+S+ + ++
Sbjct: 18 FLGISIVGQSNERGDGG-IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 70 I--EVVKSDGNIQFTIAPQGDDAS 91
+ ++V G I T+A G +
Sbjct: 77 VLRDIVHKPGPIVLTVAKSGGGSG 100
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 41.2 bits (97), Expect = 2e-05
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ GDIL +LN + +WW+ ++ G VP+
Sbjct: 6 VTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPA 38
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 44.5 bits (104), Expect = 2e-05
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLV 154
+ Y+R LF ++ ++ LP F GDIL+I ++ + WW A+ G G++
Sbjct: 134 EEAEYVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAED--SEGKRGMI 184
Query: 155 PSQELEERRKAFVPPEA 171
P +E+ R A A
Sbjct: 185 PVPYVEKYRPASASVSA 201
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 42.4 bits (100), Expect = 3e-05
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 13 GTGLSPCGLTVEQDANGNL--IIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G G+ G +G + IA+IL G ++ G L G +L NG ++
Sbjct: 31 GLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLT 83
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 41.5 bits (98), Expect = 3e-05
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKSDGNIQFTIA 84
++ + I SL + G ++ GDV+L +NG S D + + +S G ++ +
Sbjct: 21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQ 78
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 41.1 bits (97), Expect = 3e-05
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+R + Y D+ E ++F GD+ + N+ + W T GL+
Sbjct: 10 VRAILPYTKVPDT----DE--ISFLKGDMFIVHNELEDGWMWVTN-LRTDEQGLIVE 59
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 41.9 bits (99), Expect = 3e-05
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 14 TGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
G +P G + +D + +I+ ++ + L+ GD+I+ +NG++ +
Sbjct: 13 AGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAEN 64
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 42.0 bits (99), Expect = 3e-05
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 28 NGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
I I G G LKVG VIL VNG +
Sbjct: 31 QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTL 65
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 42.5 bits (100), Expect = 3e-05
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENV 62
L K GL G V++ + + I+ ++ G ++ G+++ GD+IL VN +
Sbjct: 14 LFKRKVGGL---GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPL 66
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 40.7 bits (96), Expect = 3e-05
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQL 144
++ LF Y + + E L F I+Q + ++D WW+
Sbjct: 2 FKSAVKALFDYKAQRED-----E--LTFTKSAIIQNVEKQDGGWWRGDY 43
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 41.2 bits (97), Expect = 3e-05
Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 84 APQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDP--NWWQ 141
G + + + L++++ ++ + L F GD + ++++ D +WW+
Sbjct: 4 GSSGHERVGNLNQPIEVTALYSFEGQQP-----GD--LNFQAGDRITVISKTDSHFDWWE 56
Query: 142 AQLIEPTGPMGLVPS 156
+L G G+ P+
Sbjct: 57 GKL---RGQTGIFPA 68
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 40.8 bits (96), Expect = 3e-05
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 91 SLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGP 150
+L P+ R + P + LA G+++++ W+ + G
Sbjct: 1 NLQNGPIYA-RVIQKRVPNAYD-----KTALALEVGELVKVTKINVSGQWEGEC---NGK 51
Query: 151 MGLVPS---QELEER 162
G P + L+++
Sbjct: 52 RGHFPFTHVRLLDQQ 66
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 43.9 bits (103), Expect = 3e-05
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 63 SSPEDLQIEVVKSDGNIQFTIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLA 122
S E + S Q D + Y++ LF +DP+ED L
Sbjct: 127 SLNELVDYHRSTSVSRNQQIFLR---DIEQVPQQPTYVQALFDFDPQEDG-------ELG 176
Query: 123 FNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
F GD + +++ DPNWW+ G G+ P
Sbjct: 177 FRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPR 207
Score = 40.4 bits (94), Expect = 4e-04
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 100 MRC--LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPS 156
M + + D E L+F GDIL++LN++ D NW++A+L G G +P
Sbjct: 1 MEAIAKYDFKATADD-----E--LSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPK 50
Query: 157 Q 157
Sbjct: 51 N 51
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 41.9 bits (99), Expect = 3e-05
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
LKK G GLS + + ++ G D G L GD +L V+G ++
Sbjct: 17 LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 71
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 41.5 bits (98), Expect = 3e-05
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
++ N + I+R++ G + D+ G LK GD +L VNG +V
Sbjct: 26 KEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVE 64
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 41.6 bits (98), Expect = 3e-05
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 14 TGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSP--EDLQ 69
G +P G + D N L+I RI GS L GDVIL ++G S D Q
Sbjct: 12 PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQ 70
Query: 70 IEVVKSDGNIQFTIAPQGDDASLP 93
+ + + I P
Sbjct: 71 DRIKAASYQLCLKIDRAETRLWSP 94
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 40.8 bits (96), Expect = 3e-05
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELE 160
+ Y + E + F G ++++ + WW + G G P+ L+
Sbjct: 12 VTVQPYTSQSKD-----E--IGFEKGVTVEVIRKNLEGWWYIRY---LGKEGWAPASYLK 61
Query: 161 E 161
+
Sbjct: 62 K 62
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 41.2 bits (97), Expect = 3e-05
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 9 KKILGTGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSP- 65
++I G P G + +D L I+R+ GS L +GDVI ++GEN S+
Sbjct: 5 QQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMT 63
Query: 66 -EDLQIEVVKSDGNIQFTIAPQGDDASL 92
+ Q + N+ T+A ++ L
Sbjct: 64 HLEAQNRIKGCTDNLTLTVARSEHESDL 91
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 41.5 bits (98), Expect = 4e-05
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
+D + L I+R+ AGS L GD+I +NGE+
Sbjct: 28 RDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTEL 66
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 41.1 bits (97), Expect = 4e-05
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 14 TGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
G +P G + +D + +++ ++ L+ GD+I+ +NGE+
Sbjct: 9 AGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEG 60
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 41.1 bits (97), Expect = 4e-05
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 14 TGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
G +P G ++ +D N L I+R+ G + G + VGD +L ++GEN S
Sbjct: 10 EGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGS 61
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 41.9 bits (98), Expect = 4e-05
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 23 VEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFT 82
VE+D L + + L K+G LK GD IL +N + ++ S ++
Sbjct: 38 VEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQPSLGLL 96
Query: 83 I 83
+
Sbjct: 97 V 97
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 42.2 bits (99), Expect = 4e-05
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ--IEVVKSDGNIQFTIAPQGDD 89
I ++ GS VL G VI +NG S+ ++ + I T
Sbjct: 28 QIDSVVPGS--PASKVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGTFH 85
Query: 90 ASLPIKP 96
P
Sbjct: 86 LKTGRNP 92
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 40.7 bits (96), Expect = 4e-05
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQL 144
C ++ LF Y + + E L F I+Q + +++ WW+
Sbjct: 4 TFKCAVKALFDYKAQRED-----E--LTFIKSAIIQNVEKQEGGWWRGDY 46
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 41.1 bits (97), Expect = 4e-05
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 14 TGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
TG P G ++ +D N L I+RI GS + L GD+++ ++G N +
Sbjct: 8 TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDT 59
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 41.1 bits (97), Expect = 4e-05
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 9 KKILGTGLSPCGLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENVS--SP 65
K+ G L G+ + + + + I +L G L + G L D +L +NG ++ +P
Sbjct: 11 KRDSGEQL---GIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTP 67
Query: 66 EDLQIEVVKSDGN-IQFTIA 84
E +++++ G + TIA
Sbjct: 68 ELA-AQIIQASGERVNLTIA 86
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 41.1 bits (96), Expect = 4e-05
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 23 VEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGNIQFT 82
VE+D L + + L K+G LK GD IL +N + ++ S ++
Sbjct: 29 VEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQPSLGLL 87
Query: 83 I 83
+
Sbjct: 88 V 88
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 41.7 bits (98), Expect = 5e-05
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 11 ILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
I+G G + + + I ++L S K LK GD IL V+G ++
Sbjct: 33 IVG-GQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQ 84
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 40.4 bits (95), Expect = 5e-05
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
++ +F++ ++ L+F GD++ +L + + W E T G P
Sbjct: 10 VKAIFSHAAGDN------STLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPF 60
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 40.7 bits (96), Expect = 5e-05
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 46 GVLKVGDVILGVNGENVSSPEDLQIEV 72
G ++VGD I+ +G+N S E L +
Sbjct: 16 GKIEVGDKIISADGKNYQSAEKLIDYI 42
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 41.2 bits (97), Expect = 6e-05
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 14 TGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
G +P G ++ +D N L I+ + G + +++GDV+L ++G +
Sbjct: 12 VGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQG 63
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 40.7 bits (96), Expect = 6e-05
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 46 GVLKVGDVILGVNGENVSSPEDLQIEV 72
G L+ GD I ++G+ +++ E + V
Sbjct: 20 GRLEAGDRIAAIDGQPINTSEQIVSYV 46
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 41.3 bits (97), Expect = 6e-05
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 8 LKKILGTGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
L K GL G+++ ++ ++I+ I G D+ G L VGD IL VNG N+
Sbjct: 33 LLKEDHEGL---GISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 88
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 40.3 bits (95), Expect = 6e-05
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
+ + L I ++ G ++ GDVI+ VN V
Sbjct: 21 DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVL 59
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 40.5 bits (95), Expect = 6e-05
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 84 APQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKD----PNW 139
G + + R + + D E ++F GD+L + ++ W
Sbjct: 4 GSSGTNWASGEDDHVVARAEYDFVAVSDE-----E--ISFRAGDMLNLALKEQQPKVRGW 56
Query: 140 WQAQLIEPTGPMGLVPS 156
A L GL+P+
Sbjct: 57 LLASL--DGQTTGLIPA 71
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 39.5 bits (93), Expect = 6e-05
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ L+ Y K+D + GD + ++ + + W + TG GLVP+
Sbjct: 5 KVLYAYVQKDDDEITITP-------GDKISLVARDTGSGWTKINNDTTGETGLVPT 53
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 39.9 bits (94), Expect = 6e-05
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ-KDPNWWQAQLIEPTGPMGLVPS 156
++ ++ + + E G+ L ++ + K W + + G G VP+
Sbjct: 11 VAIYHFEGSSEGTISMAE-------GEDLSLMEEDKGDGWTRVR--RKEGGEGYVPT 58
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 41.7 bits (98), Expect = 6e-05
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 8 LKKILGTGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSP 65
L G L GLT+ + + I + GS + G LKVGD IL VNG + +
Sbjct: 26 LVLGDGRSL---GLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNI 81
Query: 66 EDLQ-IEVVKSDGNIQFTIAPQG 87
+ + ++KS ++ T+ G
Sbjct: 82 LHDEAVRLLKSSRHLILTVKDVG 104
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 40.0 bits (94), Expect = 7e-05
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 15/72 (20%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK--DPNWWQAQLIEPTGPMG 152
K Y + +F Y+ + D E L GDI+ ++N+ D WW+ +L G G
Sbjct: 7 KSKDYCKVIFPYEAQND-----DE--LTIKEGDIVTLINKDCIDVGWWEGEL---NGRRG 56
Query: 153 LVPS---QELEE 161
+ P + L
Sbjct: 57 VFPDNFVKLLPP 68
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 39.9 bits (94), Expect = 7e-05
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+ Y D E ++F+ DI+ + D WW+ G GL P+
Sbjct: 13 IALYDYQAAGDD-----E--ISFDPDDIITNIEMIDDGWWRGVC---KGRYGLFPA 58
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 40.3 bits (95), Expect = 7e-05
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 8 LKKILGTGLSPCGLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENVS--S 64
L+K G GL GL++ N + ++ I+ G + D G L GD IL VNGE+V +
Sbjct: 10 LQKKPGKGL---GLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT 66
Query: 65 PEDLQIEVVKSDGN-IQFTIA 84
E + ++K + +
Sbjct: 67 QEAV-AALLKCSLGTVTLEVG 86
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 41.3 bits (97), Expect = 7e-05
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
L I ++ + G + GD I GVNG ++
Sbjct: 46 AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 83
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 41.1 bits (96), Expect = 7e-05
Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 27 ANGNLIIARILAG---SLIDKQGVLKVGDVILGVNGENVSSPEDLQ--IEVVKSDGNIQF 81
+ ++ R+ G L + G L+ GD+ + +NG +++ P + + + +
Sbjct: 32 RDDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSL 90
Query: 82 TIAPQGDDASLPIK 95
T+ G + I+
Sbjct: 91 TVERDGQQHDVYIQ 104
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight
junctions, PATJ, structural genomics; NMR {Homo
sapiens}
Length = 128
Score = 41.3 bits (97), Expect = 8e-05
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G G S L + ++ + + GS+ D+ LK D IL +N +
Sbjct: 38 GLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLD 88
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 40.6 bits (95), Expect = 8e-05
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 17/84 (20%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ--KDPNWWQAQLIEPTGPMG 152
R L+ ++ + E ++FN GDI+Q+ + +P W G G
Sbjct: 3 SGSSGYRALYPFEARNHD-----E--MSFNSGDIIQVDEKTVGEPGWLYGSF---QGNFG 52
Query: 153 LVPS---QEL--EERRKAFVPPEA 171
P +++ E KA P +A
Sbjct: 53 WFPCNYVEKMPSSENEKAVSPKKA 76
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 41.3 bits (97), Expect = 8e-05
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
GL G + + I ++ GSL D G L+ GD +L NG +
Sbjct: 49 MLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLL 98
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 39.6 bits (93), Expect = 8e-05
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 91 SLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGP 150
S P P + F Y + + L F + + + +D W+ + + G
Sbjct: 2 SEPEVP-FKVVAQFPYKSDYED-----D--LNFEKDQEIIVTSVEDAEWYFGEYQDSNGD 53
Query: 151 --MGLVPS 156
G+ P
Sbjct: 54 VIEGIFPK 61
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 40.9 bits (96), Expect = 8e-05
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 28 NGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
N + + R+ L ++G ++ G+ +L +NG+++
Sbjct: 41 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSL 75
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 40.4 bits (95), Expect = 9e-05
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
+ ++I ++A D+ G L GD ++ V+G V+
Sbjct: 30 DEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVA 68
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 40.4 bits (95), Expect = 9e-05
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 23 VEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEV 72
V+ +G + + + VL GD+I ++G S ++ +
Sbjct: 2 VKVTYDG-VYVMSVKDDV--PAADVLHAGDLITEIDGNAFKSSQEFIDYI 48
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 39.2 bits (92), Expect = 1e-04
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN-WWQAQLIEPTGPMGLVPS-- 156
++ +F + + L L+F GD++ +L ++ + W + + + G PS
Sbjct: 9 VKTIFPHTAGSNKTL------LSFAQGDVITLLIPEEKDGWLYGEH-DVSKARGWFPSSY 61
Query: 157 -QELEE 161
+ LEE
Sbjct: 62 TKLLEE 67
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 39.1 bits (92), Expect = 1e-04
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 94 IKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ--KDPNWWQAQLIEPTGPM 151
+ Y R LF Y + E L F G+I+ ++++ + WW+ +L G
Sbjct: 3 MGAKEYCRTLFPYTGTNED-----E--LTFREGEIIHLISKETGEAGWWKGEL---NGKE 52
Query: 152 GLVPS 156
G+ P
Sbjct: 53 GVFPD 57
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 39.6 bits (93), Expect = 1e-04
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK---DPNWWQAQLIEPTGPMG 152
R L+ P E LAF+ GDIL IL Q WW+ L G G
Sbjct: 6 SGLLARALYDNCPDCSD-----E--LAFSRGDILTILEQHVPESEGWWKCLL---HGRQG 55
Query: 153 LVPS 156
L P+
Sbjct: 56 LAPA 59
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 39.6 bits (93), Expect = 1e-04
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
+ L ++ K+D+ L F+ DI+ +L Q NWW ++ G G P
Sbjct: 9 ENLKAQALCSWTAKKDN-----H--LNFSKHDIITVLEQ-QENWWFGEV---HGGRGWFP 57
Query: 156 S 156
Sbjct: 58 K 58
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 40.0 bits (94), Expect = 1e-04
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 33 IARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKSDGN-IQFTIAP 85
I I+ S G LKVGD IL +NG++V + + + I+++K I+ I
Sbjct: 41 IKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV-IDLIKEADFKIELEIQT 95
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 40.4 bits (95), Expect = 1e-04
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 28 NGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
+ ++ ILAG D G L+ GD IL VNG N+ +
Sbjct: 38 GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 40.4 bits (95), Expect = 1e-04
Identities = 11/68 (16%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV-------------SSPEDLQIE 71
++ N +L + R+ ++ G +++GD IL +NGE + +++
Sbjct: 45 REYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLF 104
Query: 72 VVKSDGNI 79
+ + + ++
Sbjct: 105 LKRGETSV 112
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 40.4 bits (95), Expect = 1e-04
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G G S GL E + + I GS+ + G LK D IL +NG+ +
Sbjct: 33 GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALD 83
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 40.0 bits (94), Expect = 1e-04
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDGNIQFTI 83
+ + ++++ GS ++ G L VGD I VNG ++ S ++V+ S + +
Sbjct: 32 SEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLHMMV 90
Query: 84 APQG 87
G
Sbjct: 91 RRMG 94
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 40.5 bits (95), Expect = 1e-04
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 28 NGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
+ I+ ILAG D G L+ GD IL VNG ++ +
Sbjct: 37 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 40.1 bits (94), Expect = 1e-04
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 21 LTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQI-EVVKSDGN- 78
L +E+D +G+LI I GS +K G L GD +L +NG V E Q+ E+V+ GN
Sbjct: 19 LRIEKDTDGHLI-RVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNS 76
Query: 79 IQFTIAPQGDDASLPIKPV 97
+ + V
Sbjct: 77 VTLLVLDGDSYEKAVKNQV 95
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 9 KKILGTGLSPCGLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENV 62
K G G S D ++I I ++A + ++ G L GD ++ VN +
Sbjct: 23 KDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCL 77
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 43.2 bits (102), Expect = 1e-04
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+ Y+ + ++ L F G+ LQI+N + +WW A + TG G +PS
Sbjct: 8 LYDYESRTETDLS-------FKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPS 53
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 40.5 bits (95), Expect = 1e-04
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 28 NGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
++I + + G L GD IL VNG ++
Sbjct: 42 LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLR 77
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 39.6 bits (93), Expect = 1e-04
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 14 TGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
G +P G ++ +D N L I+ + G + +++GDV+L ++G N
Sbjct: 10 VGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQG 61
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 39.6 bits (93), Expect = 1e-04
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
+ + I I+ D G L+ GD ++ V+G V
Sbjct: 23 NEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVI 61
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 38.7 bits (91), Expect = 1e-04
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN-WWQAQLIEPTGPMGLVPS 156
R L+ YD +E E L+F GD L L ++D W + +L +G +GL P+
Sbjct: 7 RALYDYDGQEQD-----E--LSFKAGDELTKLGEEDEQGWCRGRL--DSGQLGLYPA 54
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 42.7 bits (99), Expect = 2e-04
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 4/123 (3%)
Query: 121 LAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQELEERRKAFVPPEADYVHKIGIC 180
L F G+IL I+ + + WW A+ G +G++P +E+ ++ + +
Sbjct: 142 LPFKKGEILVIIEKPEEQWWSARN--KDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYG 199
Query: 181 GTRYIKQYNTLQYNSTLMSRSFP--DTTRPMRELEENGQNYWFTSREVMERDIQDHKFLE 238
Y Q + L + S P+ + + V + LE
Sbjct: 200 IPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALE 259
Query: 239 YGE 241
G+
Sbjct: 260 VGD 262
Score = 39.6 bits (91), Expect = 0.001
Identities = 15/99 (15%), Positives = 23/99 (23%), Gaps = 13/99 (13%)
Query: 58 NGENVSSPEDLQIEVVKSDGNIQFTIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCK 117
+ P+ S R YD
Sbjct: 203 PAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTA------- 255
Query: 118 EIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
LA GDI+++ W+ ++ G GL P
Sbjct: 256 ---LALEVGDIVKVTRMNINGQWEGEV---NGRKGLFPF 288
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane
protein, PDZ domain, hydrolase, inner membrane,
membrane, metal-binding; HET: MLY MSE; 0.98A
{Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 39.4 bits (92), Expect = 2e-04
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDG-NIQFTIAPQGDDA 90
++ + S G L+ GD I+ V+G+ ++ + V + G ++ I QG
Sbjct: 7 VLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSPL 65
Query: 91 SLPIKP 96
SL + P
Sbjct: 66 SLTLIP 71
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 39.4 bits (92), Expect = 2e-04
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 33 IARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ--IEVVKSDGNIQFTIAPQGDDA 90
++ L + G L+ GD+ + +NG +++ P + + + + T+ G
Sbjct: 23 VSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQH 81
Query: 91 SLPIK 95
+ I+
Sbjct: 82 DVYIQ 86
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 38.8 bits (91), Expect = 2e-04
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ + + P + LA GDI+++ W+ ++ G GL P
Sbjct: 3 FAKAIQKRVPCAYD-----KTALALEVGDIVKVTRMNINGQWEGEV---NGRKGLFPF 52
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
G +II + K G L GD IL VNG ++
Sbjct: 30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRK 65
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 40.0 bits (94), Expect = 2e-04
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G+GL G + +++ I+ G L D+ G L+ GD IL + G NV
Sbjct: 25 GSGL---GFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQ 72
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 42.5 bits (101), Expect = 2e-04
Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEV--VKSDGNIQFTIAPQGDD 89
++ + G ++V D+I+ V+ + S + +V ++ I +
Sbjct: 247 VVNEVSPDGPAANAG-IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQ 305
Query: 90 ASLPIK 95
+L +
Sbjct: 306 LTLQVT 311
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 39.5 bits (93), Expect = 2e-04
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G +++ + ++I + G D++G +K GD +L V+G +
Sbjct: 23 GAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLL 66
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN-WWQAQLIEPTGPMGLVPS 156
M ++ Y+ + D E ++ + GDI+ ++ D + W + G GL P+
Sbjct: 3 MEAIYAYEAQGDD-----E--ISIDPGDIITVIRGDDGSGWTYGEC---DGLKGLFPT 50
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 40.0 bits (94), Expect = 2e-04
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IE 71
G+S G + + IA + + + L+VGD I+ + G + Q +
Sbjct: 37 SLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVN 96
Query: 72 VVKSDGN-IQFTIAPQGDDAS 91
++K+ I+ + GD +
Sbjct: 97 LLKNASGSIEMQVVAGGDVSE 117
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 40.1 bits (94), Expect = 2e-04
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 8 LKKILGTGL--SPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
++K G L + G ++ + + + + G +I + G +K GD++L V+G +
Sbjct: 30 IQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVEL 86
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 39.8 bits (93), Expect = 2e-04
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 21 LTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQI-EVVKSDGN- 78
L +E+D +G+LI I GS +K G L GD +L +NG V E Q+ E+V+ GN
Sbjct: 31 LRIEKDTDGHLI-RVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNS 88
Query: 79 IQFTIAPQGDDASLPIKPV 97
+ + V
Sbjct: 89 VTLLVLDGDSYEKAVKNQV 107
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 39.6 bits (93), Expect = 2e-04
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 13 GTGLSPCGLTVEQDANGN---LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ 69
G G+S G+ V DA + + + G + G ++V D I+ V+G ++
Sbjct: 21 GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNF 80
Query: 70 -IEVVKSDGN-IQFTIA 84
V+++ ++F I
Sbjct: 81 AATVLRNTKGNVRFVIG 97
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 39.6 bits (93), Expect = 2e-04
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 33 IARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
I+ ILAG D G L+ GD IL VNG ++ +
Sbjct: 39 ISFILAGGPADLSGELRKGDQILSVNGVDLRN 70
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 38.4 bits (90), Expect = 2e-04
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ--KDPNWWQAQLIEPTGPMGLVPS 156
Y + +F Y+ + D E L GDI+ ++N+ D WW+ +L G G+ P
Sbjct: 9 YCKVIFPYEAQNDD-----E--LTIKEGDIVTLINKDCIDVGWWEGEL---NGRRGVFPD 58
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 39.7 bits (93), Expect = 2e-04
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 8 LKKILGTGLSPCGLTV--EQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
LKK G L G + + + + I++++ S + G L+ GD +L VN +
Sbjct: 21 LKKPPGAQL---GFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQ 74
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 39.6 bits (93), Expect = 2e-04
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
++ +L + R+ + G ++VGD I+ +NGE+
Sbjct: 32 REYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 39.7 bits (93), Expect = 2e-04
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 29 GNLI-IARILAGSLIDKQGVLKVGDVILGVNGENV 62
G L+ I ++ G K G LK GD ++ +N E++
Sbjct: 40 GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESM 74
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 39.3 bits (92), Expect = 2e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 33 IARILAGSLIDKQGVLKVGDVILGVNGENVS 63
I +L S K G LK GD I+ V+G ++
Sbjct: 43 IKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 73
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 39.8 bits (93), Expect = 2e-04
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
+ + L I ++ G ++ GDVI+ VN V
Sbjct: 39 DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVL 77
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 39.7 bits (93), Expect = 2e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 33 IARILAGSLIDKQGVLKVGDVILGVNGENVS 63
I +L S K G LK GD I+ V+G ++
Sbjct: 63 IKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 93
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 41.8 bits (99), Expect = 2e-04
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEV--VKSDGNIQFTIAPQGDD 89
++ +L GS K G +K GD+I +NG+ ++S +L+ + + ++ + G
Sbjct: 266 FVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKP 324
Query: 90 ASLPIK 95
+ +
Sbjct: 325 LEVEVT 330
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 38.5 bits (90), Expect = 3e-04
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 12/77 (15%)
Query: 82 TIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILN--QKDPNW 139
+ G + R L+ YD + E L+ +++ + + D +W
Sbjct: 2 SSGSSGLNDLKESSNNRKARVLYDYDAANST-----E--LSLLADEVITVFSVVGMDSDW 54
Query: 140 WQAQLIEPTGPMGLVPS 156
+ G VP
Sbjct: 55 LMGER---GNQKGKVPI 68
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 39.2 bits (92), Expect = 3e-04
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 13 GTGLSPCGLTVEQDANGN---LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
G G S G + ++RI G + G L+VGD +L +NG +V
Sbjct: 19 GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDV 71
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 38.8 bits (91), Expect = 3e-04
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDGN-IQFTIAPQGDD 89
I + G D G L+ DVI+ VNG NV + ++ ++S G + + +
Sbjct: 30 FIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQ 88
Query: 90 ASL 92
++
Sbjct: 89 DTV 91
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 38.1 bits (89), Expect = 3e-04
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 13/62 (20%)
Query: 98 CYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN---WWQAQLIEPTGPMGLV 154
+ L+ + E L+F GDI+ +L Q WW L G G+V
Sbjct: 4 VLAKALYDNVAESPD-----E--LSFRKGDIMTVLEQDTQGLDGWWLCSL---HGRQGIV 53
Query: 155 PS 156
P
Sbjct: 54 PG 55
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 38.9 bits (91), Expect = 3e-04
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 5 PHPLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
H +K T L G + + L + + AG G L GD IL +N E
Sbjct: 9 RHTVKIDKDTLLQDYGFHISESLP--LTVVAVTAGGSAH--GKLFPGDQILQMNNEPAED 64
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 39.8 bits (93), Expect = 3e-04
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G G S G + L I RI G+ ++ ++ GD IL + G +
Sbjct: 41 GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQ 91
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 38.8 bits (90), Expect = 3e-04
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 115 PCKEIGLAFNHGDILQILNQKDP----NWWQAQLIEPTGPMGLVPSQELE 160
+++ ++ GD++ ++ +KDP N W LI+ G V S L+
Sbjct: 28 AAQDLDVSLLEGDLVGVIKKKDPMGSQNRW---LIDNGVTKGFVYSSFLK 74
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 41.5 bits (98), Expect = 3e-04
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEV 72
I ++AG G + G V+ V+ ++S + L V
Sbjct: 245 KIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAAV 284
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 41.9 bits (99), Expect = 3e-04
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ-KDPNWWQAQLIEPTGPMGLVPS 156
+ + + L F GD+L I+ KDPNW++A+ G G++P+
Sbjct: 17 KYNFHGTAEQ-------DLPFCKGDVLTIVAVTKDPNWYKAKN--KVGREGIIPA 62
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 39.5 bits (92), Expect = 3e-04
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 1 MEHPPHPLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGE 60
+ G +E + + ++ G + G L GD I+ VNGE
Sbjct: 35 SAIQFSYKDEENGNRGGKQRNRLEPMDT--IFVKQVKEGGPAFEAG-LCTGDRIIKVNGE 91
Query: 61 NV--SSPEDLQIEVVKSDGN-IQFTIAPQGDDAS 91
+V + + I ++++ ++ ++ P+ S
Sbjct: 92 SVIGKTYSQV-IALIQNSDTTLELSVMPKDSGPS 124
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 39.3 bits (92), Expect = 3e-04
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 13 GTGLSPCGLTVEQDANGN---LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ 69
G G+S G+ D + + + G + G ++V D+++ V+G ++
Sbjct: 16 GLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSF 75
Query: 70 -IEVVKSDGN-IQFTIA 84
V+++ ++F I
Sbjct: 76 AASVLRNTKGRVRFMIG 92
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 38.1 bits (89), Expect = 4e-04
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 100 MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
+ + K+ E + D++ +L Q++ W + + G G P
Sbjct: 20 VEITKAFFAKQAD-----E--VTLQQADVVLVL-QQEDGWLYGERL-RDGETGWFPE 67
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 38.1 bits (89), Expect = 4e-04
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 16/73 (21%)
Query: 87 GDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILN---QKDPNWWQAQ 143
G S VC+++ L+ Y+ + D E L+F G I++ILN Q D +W+ +
Sbjct: 1 GSSGS---SGVCFVKALYDYEGQTDD-----E--LSFPEGAIIRILNKENQDDDGFWEGE 50
Query: 144 LIEPTGPMGLVPS 156
G +G+ PS
Sbjct: 51 F---NGRIGVFPS 60
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 38.4 bits (90), Expect = 4e-04
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 20 GLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDG 77
G + D + I + GS + G L+ D ++ VNG+NV + + +K+
Sbjct: 18 GFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 76
Query: 78 N-IQFTIAPQGDD 89
+ + +
Sbjct: 77 DEARLLVVGPSTR 89
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 38.4 bits (90), Expect = 4e-04
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
+++ ++ GS D G L+ GD IL VN NV
Sbjct: 25 CVLSCVMRGSPADFVG-LRAGDQILAVNEINVKK 57
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 39.4 bits (92), Expect = 4e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
L I ++ + G + GD I GVNG ++
Sbjct: 47 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 78
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 38.9 bits (91), Expect = 4e-04
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDGNIQFTI 83
+ + ++ + GSL +K+G L+VGD IL VN ++++ + ++ +K + ++
Sbjct: 31 SEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSV 89
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 39.3 bits (92), Expect = 4e-04
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQI 70
G G S G + + + + A + G LK GD I+ VNG+++ + E+ +
Sbjct: 37 GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEA-V 95
Query: 71 EVVKSDGN-IQFTIAPQGDDASL 92
++K + + D+ S+
Sbjct: 96 AILKRTKGTVTLMVL-SSDETSV 117
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 38.9 bits (90), Expect = 4e-04
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 19/85 (22%)
Query: 84 APQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILN-----QKDPN 138
+ LP + ++ Y + E L GD++ ++ ++D
Sbjct: 31 STTTGRLDLPPGFMFKVQAQHDYTATDTD-----E--LQLKAGDVVLVIPFQNPEEQDEG 83
Query: 139 WWQ-------AQLIEPTGPMGLVPS 156
W Q E G+ P
Sbjct: 84 WLMGVKESDWNQHKELEKCRGVFPE 108
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 38.8 bits (91), Expect = 4e-04
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G G S V + + + IL + G LK GD ++ VNG +++
Sbjct: 23 GLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLA 73
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 41.2 bits (97), Expect = 4e-04
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+ Y+ L+F GD + +L + WW+A+ + T G +PS
Sbjct: 14 LYDYEAIHHE-------DLSFQKGDQMVVLE-ESGEWWKARSLA-TRKEGYIPS 58
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 38.4 bits (90), Expect = 4e-04
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDGNIQFTIAPQG 87
++ + G K G +K GD I+ VNG V++ L+ ++++KS + T+
Sbjct: 32 LVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSS 87
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 41.1 bits (95), Expect = 4e-04
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 17/127 (13%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLV 154
+ Y+R LF ++ ++ LP F GDIL+I ++ + WW A+ + G G++
Sbjct: 132 EEAEYVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMI 182
Query: 155 PSQELEERRKAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEE 214
P +V + + + + +
Sbjct: 183 PVP--------YVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQ 234
Query: 215 NGQNYWF 221
NG Y
Sbjct: 235 NGPIYAR 241
Score = 38.0 bits (87), Expect = 0.005
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
Y R + P + LA G+++++ W+ + G G P
Sbjct: 236 GPIYARVIQKRVPN-----AYDKTALALEVGELVKVTKINVSGQWEGEC---NGKRGHFP 287
Query: 156 S---QELEERRK 164
+ L+++
Sbjct: 288 FTHVRLLDQQNP 299
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 40.9 bits (95), Expect = 4e-04
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
++ ++I++I G D+ L VGD IL VNGE++SS
Sbjct: 99 RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 138
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 38.4 bits (90), Expect = 4e-04
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 13 GTGLSPCGLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-I 70
G G++ G ++ + I + I S ++ G +++GD I+ V+G N+ + Q +
Sbjct: 16 GLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAV 75
Query: 71 EVVKSDGN-IQFTIAPQGD 88
EV++ G + T+ +G+
Sbjct: 76 EVLRHTGQTVLLTLMRRGE 94
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 39.1 bits (91), Expect = 5e-04
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 26 DANGNLIIARILAGSLIDK-QGVLKVGDVILGVNGENVSS 64
D +I++R+ G+ D L GD ++ +NG +++
Sbjct: 38 DQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 77
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 39.0 bits (91), Expect = 5e-04
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 13 GTGLSPCGLTVEQDANGN--LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ- 69
G G + G T +Q + + + ++RI G L+ GD IL VNG+++ +
Sbjct: 29 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 88
Query: 70 IEVVKSDGN-IQFTIAPQGDDASLPIKP 96
+++ ++ G + + + + PI
Sbjct: 89 VDLFRNAGYAVSLRVQHRLQVQNGPISG 116
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 38.9 bits (91), Expect = 5e-04
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
+ + L + ++ + G ++ GDVI+ +N V
Sbjct: 40 DEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVL 78
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 38.3 bits (90), Expect = 5e-04
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
G+S G +G + + ++ + G + GD +L VNG ++
Sbjct: 17 SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSL 66
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 38.4 bits (90), Expect = 5e-04
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 25 QDANGN--LIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
+D G+ L + +L + G L+VGD++L +NGE+
Sbjct: 32 RDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQ 72
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 38.1 bits (89), Expect = 6e-04
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 20 GLTVEQDANGN-LIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
G + II I GS + G LK D+++ VNG++V +
Sbjct: 20 GFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEA 64
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 37.6 bits (88), Expect = 6e-04
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDGN-IQFT 82
+ I + GS +K G L GD ++ VNGENV Q + +++ N ++
Sbjct: 23 EKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL 81
Query: 83 IAPQGDD 89
+ D
Sbjct: 82 VVDPETD 88
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 39.4 bits (92), Expect = 6e-04
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
GL ++ NG + + + A S G L+ GD +L +NGEN +
Sbjct: 19 GLRLKSIDNG-IFVQLVQANSPASLVG-LRFGDQVLQINGENCA 60
Score = 27.1 bits (60), Expect = 7.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 34 ARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQI 70
I+ S + G L I +NG+NV +D QI
Sbjct: 112 TSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQI 147
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 40.7 bits (94), Expect = 7e-04
Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 17/154 (11%)
Query: 80 QFTIAPQGDDASLPIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNW 139
+ + S+ LF + L F GD++ +L++ + +W
Sbjct: 157 RKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDW 209
Query: 140 WQAQLIEPTGPMGLVPS---QELEERRKAFVPPE--ADYVHKIGICGTRYIKQYNTLQYN 194
+ + G G+ P + L++ + P Y ++ I + I L
Sbjct: 210 LEGTV---RGATGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSST 266
Query: 195 STLMSRSFPDTTRPMRELEENGQNYWFTSREVME 228
L + TR + E+ NY +++
Sbjct: 267 PLLKDLL--ELTRREFQREDIALNYRDAEGDLVR 298
Score = 30.0 bits (66), Expect = 1.6
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 126 GDILQILNQKDPNWWQAQLIEPTGPMGLVPSQ 157
GD++++L+ +D Q L P +
Sbjct: 294 GDLVRLLSDEDVALMVRQARGLPSQKRLFPWK 325
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 38.2 bits (89), Expect = 7e-04
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 33 IARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDGNIQFTIAPQGDDAS 91
I+ + GSL + G L++GD I+ VNG + S+ + + + V+KS ++ +I
Sbjct: 45 ISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGREL 103
Query: 92 LPIKP 96
Sbjct: 104 FMTDR 108
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 38.1 bits (89), Expect = 7e-04
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 13 GTGLSPCGLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENVS 63
++ + L ++ +L G D+ G ++ GD IL VNG NV
Sbjct: 26 QVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVE 76
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 39.5 bits (92), Expect = 7e-04
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 8 LKKILGTGLSPCGLTVE--QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
L ++ GL GL+V + L I+ ++ G D G L+VGD I+ +NG ++SS
Sbjct: 90 LDRLHPEGL---GLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISS 144
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 37.7 bits (88), Expect = 7e-04
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDGN-IQFTIAPQGDD 89
+ + G K G ++ GD ++ V GE+V + + ++ G+ + T+ D
Sbjct: 33 FLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEAD 91
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, unknown function; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 110
Score = 38.1 bits (89), Expect = 7e-04
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G G+ L I +L GS G L +GD IL VNG ++
Sbjct: 20 GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLL 70
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 36.9 bits (86), Expect = 7e-04
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 99 YMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ--KDPNWWQAQLIEPTGPMGLVPS 156
Y + +F Y+ + D E L GDI+ ++N+ D WW+ +L G G+ P
Sbjct: 4 YCKVIFPYEAQND-----DE--LTIKEGDIVTLINKDCIDVGWWEGEL---NGRRGVFPD 53
Query: 157 ---QELEE 161
+ L
Sbjct: 54 NFVKLLPP 61
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 37.7 bits (88), Expect = 8e-04
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 13 GTGLSPCGLTVEQDANGN--LIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G G + G T +Q + + + ++RI G L+ GD IL VNG+++
Sbjct: 19 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 71
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 36.8 bits (86), Expect = 8e-04
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
R +F + P+ + E L D L + Q + W++A + TG G+ P+
Sbjct: 7 RAIFRFVPRHED-----E--LELEVDDPLLVELQAEDYWYEAYNMR-TGARGVFPA 54
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 38.1 bits (89), Expect = 8e-04
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 13 GTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G G S V + + + IL + G LK GD ++ VNG ++
Sbjct: 42 GLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLV 92
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding
protein; PDZ domain, cytoplasm, membrane, polymorphism,
protein binding; 2.70A {Homo sapiens}
Length = 104
Score = 37.8 bits (88), Expect = 8e-04
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQI-EVVKSDGN 78
+I +I S G L+ GDV+ +NG + Q+ ++++S GN
Sbjct: 51 LICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGN 97
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 38.2 bits (89), Expect = 8e-04
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 13 GTGLSPCGLTVEQDANGNL--IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ- 69
G+ G + ++ GS G ++V D I+ V+G N+ +
Sbjct: 28 SLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDV 87
Query: 70 IEVVKSDGN-IQFTIAPQGDDAS 91
+EV+++ G + T+ + +S
Sbjct: 88 VEVLRNAGQVVHLTLVRRKTSSS 110
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 40.5 bits (93), Expect = 8e-04
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 98 CYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPN-WWQAQLIEPTGPMGLVPS 156
+R L+ Y+ +E L+F GD L + +D W + +L G +GL P+
Sbjct: 429 VRVRALYDYEGQEHD-------ELSFKAGDELTKMEDEDEQGWCKGRL--DNGQVGLYPA 479
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 37.3 bits (87), Expect = 0.001
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
II I GS + G LK D+++ VNG++V +
Sbjct: 32 IIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEA 63
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 37.3 bits (87), Expect = 0.001
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 20 GLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDG 77
G + D + I + S + G L+ D I+ VNG + + + +++ G
Sbjct: 23 GFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG 81
Query: 78 N-IQFTIAPQGDDA 90
+ + + + D
Sbjct: 82 DETKLLVVDRETDE 95
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 37.7 bits (88), Expect = 0.001
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 11 ILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
I G G + G + I+++ + G L+VG +L VN +++
Sbjct: 27 IRGGARGHAGNPRDPTDEG-IFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLL 78
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 37.8 bits (88), Expect = 0.001
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 4 PPHPLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
P + G P G+++ G + ++++ GS+ + G L+ GD +L NG N+
Sbjct: 17 VEEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLR 75
Query: 64 S 64
S
Sbjct: 76 S 76
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 36.5 bits (85), Expect = 0.001
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQ--KDPNWWQAQLIEPTGPMGL 153
+ + ++ E L+ GD+++I ++ D WW+ + G +G
Sbjct: 6 SGGTAVARYNFAARDMR-----E--LSLREGDVVRIYSRIGGDQGWWKGET---NGRIGW 55
Query: 154 VPS 156
PS
Sbjct: 56 FPS 58
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 36.0 bits (84), Expect = 0.001
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDP--NWWQAQLIEPTGPMGLVPS 156
L+++ +E + L F GD++ IL + D +WW ++ G G+ P+
Sbjct: 7 VALYSFAGEESG-----D--LPFRKGDVITILKKSDSQNDWWTGRV---NGREGIFPA 54
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 37.5 bits (87), Expect = 0.001
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 26 DANGNLIIARILAGSLIDK-QGVLKVGDVILGVNGENVSS 64
D +I++R+ G+ D L GD ++ +NG +++
Sbjct: 40 DQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 79
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 37.4 bits (87), Expect = 0.001
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 33 IARILAGSLIDKQGVLKVGDVILGVNGENVS 63
+++I+ K+G L++ D I+ VNG ++S
Sbjct: 45 VSKIVDSGPAAKEGGLQIHDRIIEVNGRDLS 75
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 36.0 bits (83), Expect = 0.001
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 13/64 (20%)
Query: 101 RCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS---Q 157
F Y + + E L+ G + ++ WW+ G +G PS
Sbjct: 5 FVXFAYVAERED-----E--LSLVXGSRVTVMEXCSDGWWRGSY---NGQIGWFPSNYVL 54
Query: 158 ELEE 161
E +
Sbjct: 55 EEVD 58
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 36.1 bits (84), Expect = 0.001
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 99 YMRCLFTYDP-KEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
R +F + P ED E L D L + Q + W++A + TG G+ P+
Sbjct: 8 THRAIFRFVPRHED------E--LELEVDDPLLVELQAEDYWYEAYNMR-TGARGVFPA 57
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 37.0 bits (86), Expect = 0.001
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQI-EVVKSDGN 78
+AR+ S G L GD I VNG NV +I +++K+ GN
Sbjct: 40 FVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASGN 86
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 36.9 bits (86), Expect = 0.002
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 13 GTGLSPCGLTVEQDANGN--LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
G G S G Q G+ + I +I+ G K G L++GD +L VN N+
Sbjct: 15 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 37.0 bits (86), Expect = 0.002
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
+ + + +G ++ G L+ D +L +N V
Sbjct: 38 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPV 68
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural
genomics, PDZ domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Length = 127
Score = 37.5 bits (87), Expect = 0.002
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 33 IARILAGSLIDKQGVLKVGDVILGVNGENV 62
I I+ G K G L++ D ++ VNGE +
Sbjct: 59 IKSIIHGGAAFKDGRLRMNDQLIAVNGETL 88
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 38.4 bits (89), Expect = 0.002
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 13 GTGLSPCGLTVEQDANGN---LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
G G+S G+ D + + + G + G ++V D+++ V+G ++
Sbjct: 92 GLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSL 144
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 37.4 bits (87), Expect = 0.002
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 28 NGNLIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
++ + I G +++GD +L +N + +
Sbjct: 50 RMSIFVVGINPEGPAAADGRMRIGDELLEINNQIL 84
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 37.4 bits (87), Expect = 0.002
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 13 GTGLSPCGLTVEQDANGNL--IIARILAGSLIDKQGVLKVGDVILGVNGENV 62
G G S G Q G+ + +I+ G K G L+VGD +L VN ++
Sbjct: 36 GLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 39.5 bits (92), Expect = 0.002
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+ Y+ + ++ L F G+ LQI+N + +WW A + TG G +PS
Sbjct: 91 LYDYESRTETDLS-------FKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPS 136
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 36.9 bits (86), Expect = 0.002
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 13 GTGLSPCGLTVEQDANGNL--IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ- 69
G+S G+ + + ++ GS G ++ D IL V+ NV
Sbjct: 26 SLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDV 85
Query: 70 IEVVKSDGN-IQFTIA 84
+EV+++ GN ++ +
Sbjct: 86 VEVLRNAGNPVRLLLI 101
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 36.9 bits (86), Expect = 0.002
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 14 TGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
T L G +G + + ++ + G + GD +L VNG ++
Sbjct: 27 TVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLE 76
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 36.6 bits (85), Expect = 0.002
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDGN-IQFTIAPQGDD 89
++ + GS + G L+ GD+I +NGE+V + +E++ GN I +
Sbjct: 37 VVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALENT 95
Query: 90 AS 91
+
Sbjct: 96 ET 97
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 36.7 bits (85), Expect = 0.002
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 1 MEHPPHPLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGE 60
+ P G T+ +A + + + G + GD I+ +
Sbjct: 18 LYFQSMPRSIRFTAEEGDLGFTLRGNAP--VQVHFLDPYCSASVAG-AREGDYIVSIQLV 74
Query: 61 NVSS 64
+
Sbjct: 75 DCKW 78
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 38.1 bits (88), Expect = 0.002
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 93 PIKPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMG 152
+ ++ + L+ GD+++I + +W++ LI+ G
Sbjct: 13 KADKERHGVAIYNFQGSGAP-------QLSLQIGDVVRIQ-ETCGDWYRGYLIKHKMLQG 64
Query: 153 LVPS 156
+ P
Sbjct: 65 IFPK 68
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 36.2 bits (84), Expect = 0.002
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
G T+ D+ + + + +G ++ G L+ D +L +N V
Sbjct: 17 GFTICCDSP--VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEH 58
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 39.2 bits (90), Expect = 0.002
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 29 GNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
+I+A ++ G + G L +GD I+ +NG ++
Sbjct: 232 PTVILANMMNGGPAARSGKLSIGDQIMSINGTSLV 266
Score = 39.2 bits (90), Expect = 0.002
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKSDGNIQFTIAP 85
II ++ G + ++ G ++VG I+ +NG++V + E + + S G I P
Sbjct: 318 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMP 372
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 14/69 (20%)
Query: 97 VCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKD-PNWWQAQLIEPTGPMGLVP 155
+ + YD D E L G+I++ + + W + +L G G+ P
Sbjct: 1 MVDYIVEYDYDAVHDD-----E--LTIRVGEIIRNVKKLQEEGWLEGEL---NGRRGMFP 50
Query: 156 S---QELEE 161
+E++
Sbjct: 51 DNFVKEIKR 59
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 36.2 bits (84), Expect = 0.003
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDGN 78
+ I + + G + D ++ VNGENV + +E VK G+
Sbjct: 35 YMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGS 81
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 36.1 bits (84), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
+ I +I+ G G L V D +L VN +VS
Sbjct: 36 IFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVS 68
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 36.6 bits (84), Expect = 0.004
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 13 GTGLSPCGLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G P +D I + R+ G + G L++GD I+ VNG +++
Sbjct: 47 GIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMT 97
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell
adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 36.3 bits (84), Expect = 0.004
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 33 IARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
+A +L S K+G L+ GD IL VN + ++
Sbjct: 55 VAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 85
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 36.0 bits (84), Expect = 0.005
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 48 LKVGDVILGVNGENVSSPEDLQIEV 72
L+ DVI V+ + ++S DLQ +
Sbjct: 74 LEKYDVITKVDDKEIASSTDLQSAL 98
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 35.8 bits (83), Expect = 0.005
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 13 GTGLSPCGLTVEQDANGN---LIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G G+S G G+ + I+R+ + G ++VGD +L VNG +
Sbjct: 27 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQ 79
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 35.0 bits (80), Expect = 0.006
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 85 PQGDDASLPIKPVCY-MRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQK-DPNWWQA 142
+ ++ LP V + L N GDI+++ + + NWW+
Sbjct: 5 KKRNELGLPKMEVFQEYYGIPPPPGAFGGFLR-------LNPGDIVELTKAEAEHNWWEG 57
Query: 143 QLIEPTGPMGLVPS 156
+ T +G P
Sbjct: 58 RNT-ATNEVGWFPC 70
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 35.6 bits (82), Expect = 0.006
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQI-EVVKSDGN 78
+ + G + + G L++GD ++ VNG+NV Q+ +++ GN
Sbjct: 48 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGN 94
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 35.4 bits (82), Expect = 0.006
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 13 GTGLSPCGLTVEQDANGN--LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
G G S G Q G+ + + +I+ G K G L++GD +L VN ++
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSL 66
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 36.6 bits (84), Expect = 0.007
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 26/167 (15%)
Query: 96 PVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVP 155
+ L +Y+P D L F G+ L+IL + WW+AQ + TG G +P
Sbjct: 11 QDNLVIALHSYEPSHDG-------DLGFEKGEQLRILE-QSGEWWKAQSL-TTGQEGFIP 61
Query: 156 SQELEERRKAFVPPEADYVHKIGICGTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEEN 215
+ + PE + + + L++ + +RE E
Sbjct: 62 FN--FVAKANSLEPEPWFFKNL-----------SRKDAERQLLAPGNTHGSFLIRESEST 108
Query: 216 GQNYWFTSREVMERDIQD-HKFLEYGEHNGHLY---GTHLDSIREVI 258
++ + R+ + + + NG Y + E++
Sbjct: 109 AGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELV 155
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 35.2 bits (81), Expect = 0.007
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
+ + + G K GD I+ + G +
Sbjct: 38 VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKW 70
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 35.7 bits (82), Expect = 0.007
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 32 IIARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
+ + G + + G L++GD ++ VNG+NV
Sbjct: 68 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVK 99
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 34.6 bits (80), Expect = 0.009
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
+ + I D G LK D +L VN
Sbjct: 34 VYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRT 64
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 34.2 bits (78), Expect = 0.009
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 121 LAFNHGDILQILNQK-DPNWWQAQLIEPTGPMGLVPS 156
L N GDI+++ + + NWW+ + T +G P
Sbjct: 27 LRLNPGDIVELTKAEAEHNWWEGRNTA-TNEVGWFPC 62
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 37.2 bits (86), Expect = 0.009
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 95 KPVCYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLV 154
V L+ + +D L F GD++++++ + WW ++ G
Sbjct: 28 GSVVCAEALWDHVTMDDQELG-------FKAGDVIEVMDATNREWWWGRV---ADGEGWF 77
Query: 155 PSQELEERRKAFVPPEAD 172
P+ + R P + D
Sbjct: 78 PASFVRLRVNQDEPADDD 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.010
Identities = 61/400 (15%), Positives = 111/400 (27%), Gaps = 169/400 (42%)
Query: 112 SLLPCKEIGLAFNHGDI---------------------LQILNQKDPNWWQAQLIEPTGP 150
S P L +HG + +IL + + EPT P
Sbjct: 5 STRP-----LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD--EPTTP 57
Query: 151 MGLVP------SQELEERR------------KAFVPPEADY-----VHKI-----GICGT 182
LV S +E + F E Y +H + T
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF---ENCYLEGNDIHALAAKLLQENDT 114
Query: 183 RYIKQYNTLQ--YNS-TLMSRSFPDTTRP--MRELEEN---------GQ---NYWF---- 221
+K ++ + + R F + R + E GQ + +F
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 222 ----TSREVMERDIQDH-----KFLEYGEHNGHLYGTHLDSIR-----------EVILSG 261
T ++ I+ + + ++ L+ + + +LS
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 262 KI----------------C-VLDCSPVGLFTFLLGLI---EGTVTAKLIPYTYSIPICSW 301
I +L +P L ++L G +G VTA I T S W
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS-----W 289
Query: 302 SSFF--------------------ASDTTRP---MRELEENGQN---YWFT----SREVM 331
SFF +T+ P + + EN + + ++E +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 332 ERDIQDHKFLEYGEHNGHLYGTHLDSI------REVILSG 365
+ + + N HL I + +++SG
Sbjct: 350 QDYVN--------KTNSHLPAGKQVEISLVNGAKNLVVSG 381
Score = 37.3 bits (86), Expect = 0.011
Identities = 33/163 (20%), Positives = 52/163 (31%), Gaps = 55/163 (33%)
Query: 25 QDANGNLII-ARILAGSLIDKQGV----LKVGD-----VILGVNGENVSSPEDLQIEVVK 74
+A N + IL SL + +GV L + + V VN N P Q+E+
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 75 SDGNIQFTI------------------APQGDDAS-LPI---KPVCYMRCLFTYDPKEDS 112
+G + AP G D S +P K R F
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR--F-------- 420
Query: 113 LLPCKEIGLAFNHGDIL--------QILNQKDPNWWQAQLIEP 147
LP + F H +L + L + + ++ + P
Sbjct: 421 -LP---VASPF-HSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Score = 31.6 bits (71), Expect = 0.66
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 169 PEADYVHKIGICGTRYIKQ-YNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSRE 225
P +H G G + I++ Y+ + + + + + T + +E+ E+ +Y F S +
Sbjct: 1669 PVNLTIHFGGEKG-KRIRENYSAMIFETIVDGK--LKTEKIFKEINEHSTSYTFRSEK 1723
Score = 28.1 bits (62), Expect = 7.5
Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 55/194 (28%)
Query: 269 SPVGLFTFLLGLIEGTVTAKLIPYTYSIPICSWSSF----------------FASDTTRP 312
+P L LG + V + + + F +
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 313 MRELEENGQNYWFTSREVMERDIQ---DHKFLE-YGEHNGHLYGTHLDSIREVILSGKIC 368
+ + +E +NY T+R + +R + GE N L I G+
Sbjct: 116 LVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLV---------AIFGGQGN 165
Query: 369 VLDCSPVEEDIKRTLEESACLQRSYERFIDKVI------------VNEDFDETFRTVIEL 416
D EE L + L ++Y + +I D ++ F + +
Sbjct: 166 TDDY--FEE-----LRD---LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 417 LDTLSNKHQVDSRP 430
L+ L N + P
Sbjct: 216 LEWLENP---SNTP 226
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 36.9 bits (86), Expect = 0.010
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 37 LAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEV 72
L + D G L +GD+I VNG VS+ DL +
Sbjct: 269 LQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRIL 304
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 36.7 bits (85), Expect = 0.014
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 103 LFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPS 156
L+ + D+ L G+ L++L W + G VPS
Sbjct: 49 LYDFVASGDNTLS-------ITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPS 93
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 34.8 bits (79), Expect = 0.015
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 15 GLSPCGLTVEQDANGNLIIARILAGSL-IDKQGVLKVGDVILGVNGENVS--SPEDLQIE 71
G S + + + + + + + + + GD IL +NG V E+++
Sbjct: 30 GFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDA 89
Query: 72 VVKSDGNIQFTI----APQGDDASLP 93
+ ++ +Q I PQ D S P
Sbjct: 90 IKQTSQTLQLLIEHDPVPQRLDQSGP 115
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 34.3 bits (79), Expect = 0.015
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
++I+ +L G + G L+ D + VNG ++
Sbjct: 41 IVISDVLKGGPAE--GQLQENDRVAMVNGVSMD 71
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin,
membrane protein; 1.65A {Homo sapiens}
Length = 209
Score = 35.8 bits (82), Expect = 0.016
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKS 75
+ R+ S + G+ D I+ +NG ++ D +++K+
Sbjct: 18 YHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKA 62
Score = 33.1 bits (75), Expect = 0.10
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 15 GLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVK 74
G+S + + + + + S G+ D I+G + S EDL +
Sbjct: 98 GVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNES-EDLFSLIET 156
Query: 75 SDG-NIQFTIAPQGDD 89
+ ++ + D
Sbjct: 157 HEAKPLKLYVYNTDTD 172
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 34.3 bits (79), Expect = 0.017
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
++I+ +L G D G+L+ D ++ VNG +
Sbjct: 48 IVISDVLPGGPAD--GLLQENDRVVMVNGTPM 77
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 34.0 bits (78), Expect = 0.022
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G + G + IL L+ GD+I + +NV
Sbjct: 26 GFAIADSPTGQ-KVKMILDSQWC---QGLQKGDIIKEIYHQNVQ 65
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 33.4 bits (77), Expect = 0.023
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 20 GLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENVSS 64
G T+ G + +I+ + LK GD+I+ VN +NV +
Sbjct: 17 GFTIADSPGGGGQRVKQIVDS---PRSRGLKEGDLIVEVNKKNVQA 59
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 35.1 bits (80), Expect = 0.026
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 18/94 (19%)
Query: 20 GLTVEQDANGNLI-IARILAGSLIDKQGVLKVGDVILGVNGENV-------------SSP 65
G + D + I + S + G L+ D I+ VNG + +
Sbjct: 23 GFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG 81
Query: 66 EDLQIEVVKSDGNIQFT---IAPQGDDASLPIKP 96
++ ++ VV + + F + P + + P+
Sbjct: 82 DETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPV 115
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 33.4 bits (77), Expect = 0.027
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQ-IEVVKSDGN-IQFTIAPQGD 88
+ I+R+ + G ++VGD +L VNG + E + +E ++ G +Q + + +
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERE 94
Query: 89 DA 90
+
Sbjct: 95 TS 96
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 33.7 bits (77), Expect = 0.029
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 17/80 (21%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENV-------------SSPEDLQIEVVKSDG 77
I + S + G L+ D I+ VNG + + ++ ++ VV +
Sbjct: 35 QFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET 93
Query: 78 NIQFT---IAPQGDDASLPI 94
+ F + P + + P+
Sbjct: 94 DEFFKKCRVIPSQEHLNGPL 113
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 35.1 bits (81), Expect = 0.030
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 98 CYMRCLFTYDPKEDSLLPCKEIGLAFNHGDILQILNQKDPNWWQAQLIEPTGPMGLVPSQ 157
C + ++ Y + D L F+ G I+ +LN++DP+WW+ E +G +GL PS
Sbjct: 3 CQVIGMYDYTAQNDDELA-------FSKGQIINVLNKEDPDWWKG---EVSGQVGLFPSN 52
Query: 158 ELEERRKAFVPPE 170
++ +
Sbjct: 53 YVKLTTDMDPSQQ 65
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 32.4 bits (74), Expect = 0.064
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 20 GLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G T+ D+ + +IL I L GD+I+ +N +NV
Sbjct: 24 GFTIA-DSPTGQRVKQILD---IQGCPGLCEGDLIVEINQQNVQ 63
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 32.0 bits (73), Expect = 0.082
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
+ + R+ +L+ GD I+ NG +
Sbjct: 37 IFVTRVQPEGPAS--KLLQPGDKIIQANGYSF 66
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 34.4 bits (78), Expect = 0.087
Identities = 9/68 (13%), Positives = 19/68 (27%)
Query: 1 MEHPPHPLKKILGTGLSPCGLTVEQDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGE 60
+ G + S I + G+ G +I ++GE
Sbjct: 728 FTDKDPFRSGRIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGE 787
Query: 61 NVSSPEDL 68
V + ++
Sbjct: 788 TVGAGSNI 795
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 31.6 bits (72), Expect = 0.10
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENV 62
+ + R+ +L+ GD I+ NG +
Sbjct: 45 IFVTRVQPEGPAS--KLLQPGDKIIQANGYSF 74
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 32.3 bits (72), Expect = 0.38
Identities = 7/73 (9%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 25 QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPE-DLQIEVVKSDGNIQFTI 83
+ + L + + G+ GD I+ ++ + +E +
Sbjct: 492 KASPQGLDVLNVYHDESAYHAGL-SAGDKIIAIDHLQATEQSVKRILERYIPGDTVTIHA 550
Query: 84 APQGDDASLPIKP 96
+ + +L +
Sbjct: 551 FRRDELMTLELTW 563
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 30.9 bits (70), Expect = 0.77
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 13 GTGLSPCGLTVE-QDANGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVS 63
G V D N +I+ ++ GS ++ G L+ G I+ +NG+ ++
Sbjct: 73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYIT 123
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein,
DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase;
HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A*
2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Length = 474
Score = 30.7 bits (70), Expect = 1.1
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 16/50 (32%)
Query: 20 GLTVEQDANGNLIIAR---------ILAGSLIDKQ---GVLKVGDVILGV 57
G V+ D GN + A GS +D Q G D ILGV
Sbjct: 84 GCKVKVDKIGN-MFAVYPGKNGGKPTATGSHLDTQPEAGKY---DGILGV 129
>3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated,
disulphide bonds, oxidized cystein glycoprotein,
hydrolase, lipid degradation, lysosome; HET: NAG PG4
PGE; 2.40A {Mus musculus} PDB: 3fgw_A*
Length = 559
Score = 30.6 bits (68), Expect = 1.2
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 15/72 (20%)
Query: 276 FLLGLIEGTVTAKLI-------------PYTYSIPICSWSSFFASDTTRPMRELEENGQN 322
+ G++E +V+ +LI P+ Y + C F M+ E +
Sbjct: 75 YAAGVVEASVSEELIYMHWMNTVVNYCGPFEYEVGYCEKLKNFLEANLEWMQREMELNPD 134
Query: 323 --YWFTSREVME 332
YW R +
Sbjct: 135 SPYWHQVRLTLL 146
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain,
M20 peptidase family, evolution, residue, dimerization
domain; 2.75A {Bacillus stearothermophilus}
Length = 408
Score = 30.2 bits (69), Expect = 1.5
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 17/52 (32%)
Query: 19 CGLTVEQDANGNLIIAR----------ILAGSLIDKQ---GVLKVGDVILGV 57
GL V +DA GN +I R +L GS +D G D LGV
Sbjct: 48 AGLFVYEDAAGN-LIGRKEGTNPDATVVLVGSHLDSVYNGGCF---DGPLGV 95
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin
utilization, structural genomics, PSI, Pro structure
initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP:
c.56.5.4 d.58.19.1 PDB: 2imo_A
Length = 423
Score = 29.8 bits (68), Expect = 1.7
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 17/52 (32%)
Query: 19 CGLTVEQDANGNLIIAR----------ILAGSLIDKQ---GVLKVGDVILGV 57
GL D GN + R +L+GS ID G L D G
Sbjct: 52 SGLETRFDEVGN-LYGRLNGTEYPQEVVLSGSHIDTVVNGGNL---DGQFGA 99
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 28.8 bits (64), Expect = 4.0
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 9 KKILGTGLSPCGLTVEQDANGNLIIARILAGSL--IDKQG-VLKVGDVILGVNG 59
+I + D GNL A + S+ I + GV G
Sbjct: 205 PEIFVEQTNIDDFAF--DVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIG 256
>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely
alpha-helical, C-terminal domain M beta-sheet
(trefoil-like); 2.49A {Shewanella oneidensis} SCOP:
c.8.2.2 d.334.1.1
Length = 628
Score = 28.7 bits (65), Expect = 4.4
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 153 LVPSQELEERRKAFVPPEADYV 174
LV EL R +
Sbjct: 576 LVSDTELATRTATEIDLRHSRY 597
>3q62_A 3-hydroxydecanoyl-[acyl-carrier-protein] dehydrat; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: MES; 1.40A {Yersinia
pseudotuberculosis} PDB: 1mka_A* 1mkb_A
Length = 175
Score = 27.6 bits (61), Expect = 5.4
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 41 LIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGN 78
+I ++ ++ V D + V+G+ + + DL++ + K
Sbjct: 137 VIMRKLIMGVADGEVLVDGKVIYTATDLKVGLFKDTNA 174
>3fgr_A Putative phospholipase B-like 2 28 kDa form; alpha beta,
glycosylated, disulphide bonds, N-terminal nucle
hydrolase fold, two chain form; HET: NAG; 1.80A {Mus
musculus} PDB: 3fgt_A*
Length = 202
Score = 27.7 bits (61), Expect = 6.3
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 15/71 (21%)
Query: 276 FLLGLIEGTVTAKLI-------------PYTYSIPICSWSSFFASDTTRPMRELEENGQN 322
+ G++E +V+ +LI P+ Y + C F M+ E +
Sbjct: 75 YAAGVVEASVSEELIYMHWMNTVVNYCGPFEYEVGYCEKLKNFLEANLEWMQREMELNPD 134
Query: 323 --YWFTSREVM 331
YW R +
Sbjct: 135 SPYWHQVRLTL 145
>3rlf_G Maltose transport system permease protein MALG; integral membrane
protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 3fh6_G 2r6g_G* 3puv_G* 3pux_G* 3puy_G*
3puz_G* 3pv0_G* 3puw_G*
Length = 296
Score = 27.7 bits (62), Expect = 7.1
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 271 VGLFTFLLGLIEGTVTAKLIPYTYSIPICSW--SSFFASDTTRPMRELEE 318
+G + +GL T + Y I + W +F T LEE
Sbjct: 147 LGEYIPFIGL--NTHGGVIFAYLGGIALHVWTIKGYFE---TID-SSLEE 190
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase;
HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A*
3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Length = 227
Score = 27.4 bits (61), Expect = 7.5
Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 181 GTRYIKQYNTLQYNSTLMSRSFPDTTRPMRELEENGQNYWFTSREVMERDIQDHKF 236
+++Q L S+ + ++E G ++F + + ++ H
Sbjct: 171 DKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYF---TLYTKKLEHHHH 223
>2cf2_C Fatty acid synthase, DH domain; transferase, fatty acid metabolism,
fatty acid biosynthesis, multienzyme; 4.30A {Sus scrofa}
SCOP: d.38.1.2
Length = 342
Score = 27.6 bits (60), Expect = 8.1
Identities = 7/51 (13%), Positives = 24/51 (47%)
Query: 28 NGNLIIARILAGSLIDKQGVLKVGDVILGVNGENVSSPEDLQIEVVKSDGN 78
+ RI +++++ ++ + D + V+G + + DL++ + +
Sbjct: 291 TAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQDTSA 341
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown
function; 1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 27.2 bits (59), Expect = 8.2
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 31 LIIARILAGSLIDKQGVLKVGDVILGVNGENVS--SPEDLQIEVVKSDGNIQFTI 83
+ + R+ +L+ GD I+ NG + + ++ I
Sbjct: 26 IFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.421
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,959,296
Number of extensions: 431729
Number of successful extensions: 1527
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1457
Number of HSP's successfully gapped: 452
Length of query: 440
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 344
Effective length of database: 4,021,377
Effective search space: 1383353688
Effective search space used: 1383353688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)