BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy442
(66 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+ES GS+SG+TSKKIV+
Sbjct: 100 MANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVIT 159
Query: 61 NSGQLS 66
+ GQLS
Sbjct: 160 DCGQLS 165
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+ES GS+SG+TSKKIV+
Sbjct: 99 MANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVIT 158
Query: 61 NSGQLS 66
+ GQLS
Sbjct: 159 DCGQLS 164
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+ES GS+SG+TSKKIV+
Sbjct: 101 MANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVIT 160
Query: 61 NSGQLS 66
+ GQLS
Sbjct: 161 DCGQLS 166
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+ES GS+SG+TSKKIV+
Sbjct: 100 MANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVIT 159
Query: 61 NSGQLS 66
+ GQLS
Sbjct: 160 DCGQLS 165
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 54/65 (83%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFITTV WLD +HVVFG VV+G D+VKK+ES+GS SG T +IVVA
Sbjct: 98 MANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVA 157
Query: 61 NSGQL 65
SG+L
Sbjct: 158 KSGEL 162
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 54/65 (83%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFF+ TVKT WLD +HVVFG VVEGLDVVK +ES GSQSGK K ++A
Sbjct: 107 MANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIA 166
Query: 61 NSGQL 65
+ GQL
Sbjct: 167 DCGQL 171
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T T WLD +HVVFG V++GLDVVKK+E +GS SGKT +IVV+
Sbjct: 114 MANAGPNTNGSQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVS 173
Query: 61 NSGQLS 66
+ G+++
Sbjct: 174 DCGEVA 179
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG+V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 99 MANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIA 158
Query: 61 NSGQLS 66
+ GQL
Sbjct: 159 DCGQLE 164
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 119 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 178
Query: 61 NSGQLS 66
+ GQL
Sbjct: 179 DCGQLE 184
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 100 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 159
Query: 61 NSGQLS 66
+ GQL
Sbjct: 160 DCGQLE 165
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 100 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 159
Query: 61 NSGQLS 66
+ GQL
Sbjct: 160 DCGQLE 165
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 99 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 158
Query: 61 NSGQLS 66
+ GQL
Sbjct: 159 DCGQLE 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 108 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 167
Query: 61 NSGQLS 66
+ GQL
Sbjct: 168 DCGQLE 173
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 100 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 159
Query: 61 NSGQLS 66
+ GQL
Sbjct: 160 DCGQLE 165
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 100 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 159
Query: 61 NSGQLS 66
+ GQL
Sbjct: 160 DCGQLE 165
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 100 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 159
Query: 61 NSGQLS 66
+ GQL
Sbjct: 160 DCGQLE 165
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 100 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 159
Query: 61 NSGQLS 66
+ GQL
Sbjct: 160 DCGQLE 165
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 54/65 (83%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 100 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 159
Query: 61 NSGQL 65
+ GQL
Sbjct: 160 DCGQL 164
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 98.2 bits (243), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 100 MANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 159
Query: 61 NSGQLS 66
+ GQL
Sbjct: 160 DCGQLE 165
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 104 MANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 163
Query: 61 NSGQLS 66
+ GQL
Sbjct: 164 DCGQLE 169
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 100 MANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 159
Query: 61 NSGQLS 66
+ GQL
Sbjct: 160 DCGQLE 165
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 54/65 (83%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ ++ GS++GKTSKKI +A
Sbjct: 99 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIA 158
Query: 61 NSGQL 65
+ GQL
Sbjct: 159 DCGQL 163
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 51/65 (78%)
Query: 2 ANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVAN 61
ANAGPNTNGSQFFI T KT WLD +HVVFG V EG ++V+ E GS++GKTSKKI +A+
Sbjct: 100 ANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIAD 159
Query: 62 SGQLS 66
GQL
Sbjct: 160 CGQLE 164
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFITTV WLD +HVVFG V+EG++VVK +E GSQ+GK +K + +
Sbjct: 123 MANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCIT 182
Query: 61 NSG 63
SG
Sbjct: 183 ASG 185
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 53/65 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MAN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++E+ GS+ GK +K+++A
Sbjct: 108 MANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIA 167
Query: 61 NSGQL 65
+ G+
Sbjct: 168 DCGEY 172
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 53/65 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MAN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++E+ GS+ GK +K+++A
Sbjct: 100 MANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIA 159
Query: 61 NSGQL 65
+ G+
Sbjct: 160 DCGEY 164
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MAN+GPNTNGSQFFI T K WLD +HVVFG VV+G +VVKK+ES+GS+SGK + ++++
Sbjct: 107 MANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIIS 166
Query: 61 NSGQL 65
G+L
Sbjct: 167 RCGEL 171
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 53/66 (80%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+E GS SGKT+ I +
Sbjct: 99 MANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKIT 158
Query: 61 NSGQLS 66
+ G ++
Sbjct: 159 DCGTVA 164
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+E GS SGKT+ I +
Sbjct: 100 MANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKIT 159
Query: 61 NSG 63
+ G
Sbjct: 160 DCG 162
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 52/64 (81%)
Query: 2 ANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVAN 61
AN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++E+ GS+ GK +K+++A+
Sbjct: 110 ANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIAD 169
Query: 62 SGQL 65
G+
Sbjct: 170 CGEY 173
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFITTV T+WLD +HVVFG V++G++VVK +E+ GS SGK +I +A
Sbjct: 98 MANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIA 157
Query: 61 NSG 63
G
Sbjct: 158 KCG 160
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 50/65 (76%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTN SQFFIT V WLD +HVVFG V+EG++VV+++E G++SG + +V+
Sbjct: 106 MANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVIT 165
Query: 61 NSGQL 65
+ G+L
Sbjct: 166 DCGEL 170
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKK-IVV 59
MANAG +TNGSQFFITTVKT WLD RHVVFG ++EG+DVV+K+E G K+ +++
Sbjct: 103 MANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVII 162
Query: 60 ANSGQLS 66
A SG ++
Sbjct: 163 AASGHIA 169
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+ES + S K K +++
Sbjct: 102 MANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVII 161
Query: 60 ANSGQLS 66
A+ G++
Sbjct: 162 ADCGKIE 168
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+ES + S K K +++
Sbjct: 112 MANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVII 171
Query: 60 ANSGQLS 66
A+ G++
Sbjct: 172 ADCGKIE 178
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTN SQF IT V WLD +HVVFG V+EG++VV+++E G++SG + +V+
Sbjct: 106 MANAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVIT 165
Query: 61 NSGQ 64
+ G+
Sbjct: 166 DCGE 169
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVV 59
MANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E+ + K K + +
Sbjct: 109 MANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTI 168
Query: 60 ANSGQLS 66
A+ G++
Sbjct: 169 ADCGKIE 175
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVV 59
MANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E+ + K K + +
Sbjct: 109 MANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTI 168
Query: 60 ANSGQLS 66
A+ G++
Sbjct: 169 ADCGKIE 175
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 45/62 (72%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPN+NGSQFF+TT T WLD RHVVFG VVEG+DVVKK+E+ + KK V
Sbjct: 101 MANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKI 160
Query: 61 NS 62
N
Sbjct: 161 ND 162
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MANAGPNTNGSQFFITT T WLD RHVVFG V++G+DVV ++E + S + K + +
Sbjct: 107 MANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKI 166
Query: 60 ANSGQL 65
SG+L
Sbjct: 167 VASGEL 172
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSK--KIV 58
MAN G +TNGSQFFIT KT WLD +HVVFG VVEG+DVV K+ GS+SG+ K +I
Sbjct: 124 MANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIE 183
Query: 59 VANSGQL 65
+ + G L
Sbjct: 184 IRDCGVL 190
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MANAGPNTNGSQFFITT T WLD HVVFG V++G+DVV ++E + S + K + +
Sbjct: 107 MANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKI 166
Query: 60 ANSGQL 65
SG+L
Sbjct: 167 VASGEL 172
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQSG--KTSKK 56
MANAGPNTNGSQFFITT T+WLD +HVVFG V + VVK++E++GS SG +++ +
Sbjct: 104 MANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTR 163
Query: 57 IVVANSGQL 65
+ N G+L
Sbjct: 164 PKIVNCGEL 172
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 74.3 bits (181), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/65 (56%), Positives = 47/65 (72%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAG NTNGSQFFITTV T LD +HVVFG V++G+ V K LE++ + K +K V+A
Sbjct: 120 MANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIA 179
Query: 61 NSGQL 65
G+L
Sbjct: 180 ECGEL 184
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 42/65 (64%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MAN G NTN SQF IT K LD +HVVFG V +G+D VKK+ES GS G ++I +
Sbjct: 103 MANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITIT 162
Query: 61 NSGQL 65
GQ+
Sbjct: 163 ECGQI 167
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVV 59
MAN+GP+TNG QFFIT K WLD +HVVFG +++GL V++K+E++ + + K +V+
Sbjct: 112 MANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVI 171
Query: 60 ANSGQL 65
+ G++
Sbjct: 172 SQCGEM 177
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MAN GPNTNGSQFFITT L+N HVVFG VV G +VV K+E + + S + +V+
Sbjct: 111 MANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVI 170
Query: 60 ANSGQL 65
N G+L
Sbjct: 171 LNCGEL 176
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 36/43 (83%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 43
MANAG NTNGSQFFIT V T WLDN+H VFG V +G++VV+++
Sbjct: 110 MANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRI 152
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVV 59
MANAGP+TNGSQFFIT K WLD +HVVFG V++G+ VV +E + + +
Sbjct: 104 MANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTI 163
Query: 60 ANSGQLS 66
NSG++
Sbjct: 164 VNSGKID 170
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 44
MANAGP+TNGSQFFIT K WLD +HVVFG V++G+ VV +E
Sbjct: 112 MANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIE 155
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 33/46 (71%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 46
MAN GPNTNGSQFFITTV WLD +H VFG V +G +V +E +
Sbjct: 94 MANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKV 139
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS 50
MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++ + + S
Sbjct: 100 MANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNS 149
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 43
MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++
Sbjct: 100 MANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 43
MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++
Sbjct: 100 MANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSKKIVV 59
MAN G +TNGSQFFITT T LD HVVFG V+ G +VV+++E+ + + K ++ +
Sbjct: 114 MANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRI 173
Query: 60 ANSGQL 65
+ G+L
Sbjct: 174 LSCGEL 179
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSKKIVV 59
MAN G +TNGSQFFITT T LD HVVFG V+ G +VV+++E+ + + K ++ +
Sbjct: 114 MANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRI 173
Query: 60 ANSGQL 65
+ G+L
Sbjct: 174 LSCGEL 179
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSKKIVV 59
MAN G +TNGSQFFITT T LD HVVFG V+ G +VV+++E+ + + K ++ +
Sbjct: 131 MANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRI 190
Query: 60 ANSGQL 65
+ G+L
Sbjct: 191 LSCGEL 196
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS 50
MAN+GPN+N SQFFIT A+LD +H +FG VV G DV+ +E++ S
Sbjct: 108 MANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDP 157
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 46
MAN GPNTNGSQFFIT K LD ++ VFG V++GL+ + +LE +
Sbjct: 95 MANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 140
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 46
MAN GPNTNGSQFFIT K LD ++ VFG V++GL+ + +LE +
Sbjct: 89 MANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 38/48 (79%), Gaps = 2/48 (4%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGLDVVKKLESM 46
MAN+GPNTNG QFFITT K WLD ++VVFG ++ + L ++KK+E++
Sbjct: 161 MANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENV 208
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSKKIVV 59
MAN G +TNGSQFFITT LD HVVFG V+ G +V++++E++ + + + + V
Sbjct: 124 MANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRV 183
Query: 60 ANSGQLS 66
+ G L+
Sbjct: 184 IDCGVLA 190
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE 35
MANAGP TNGSQFFIT KT L+ RH +FG V++
Sbjct: 124 MANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVID 158
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 46
MAN G ++N S+FFIT L+N+H +FG VV GLDV+++ E +
Sbjct: 107 MANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKL 152
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 2 ANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVA 60
A+ PNTNGSQFFIT L+ +V+FG +++G + + LE+ S +S K +I++
Sbjct: 110 ASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIK 169
Query: 61 N 61
+
Sbjct: 170 D 170
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKI 57
M+N GPNTN SQFFIT LD +H +F V + + ++ + S+ Q+ T+K I
Sbjct: 127 MSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASV--QTTATNKPI 181
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 33
MANAG + NGSQFF T + L+N+H +FG V
Sbjct: 113 MANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 145
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 10/56 (17%)
Query: 6 PNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLDVVKKLESM--GSQSG 51
P++ +QFFI A+LD+ + VFG VVEG DVV +++S+ GS++G
Sbjct: 91 PHSASAQFFINVKDNAFLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAG 146
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 11 SQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKL-----ESMGSQSGKTSKKIVV 59
SQFFI A+LD+ + VFG VV+G+DV K+ +G SK +V+
Sbjct: 101 SQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 11 SQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKL-----ESMGSQSGKTSKKIVV 59
SQFFI A+LD+ + VFG VV+G+DV K+ +G SK +V+
Sbjct: 101 SQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 31.6 bits (70), Expect = 0.10, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 8 TNGSQFFITTVKTAWLDNRHVVFGSV 33
TNG+QFFIT + L+N + +FG V
Sbjct: 133 TNGNQFFITLARADVLNNAYTLFGKV 158
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 6 PNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLDVVKKLESMGSQS 50
P++ +QFFI +L++ + VFG VVEG D+V K++++ + S
Sbjct: 95 PHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGS 147
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 6 PNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLDVVKKLESMGS 48
P++ +QFFI V +L+ + VF VV+G+DVV K++ + +
Sbjct: 91 PHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVAT 141
>pdb|2BGI|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus Complexed With Three Molecules Of
The Detergent N-Heptyl-Beta-D-Thioglucoside At 1.7
Angstroms
pdb|2BGJ|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2BGJ|B Chain B, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2BGJ|C Chain C, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2BGJ|D Chain D, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2VNH|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Ii At
2. 27 Angstroms Resolution
pdb|2VNI|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With 2p-Amp At 2.37
Angstroms Resolution
pdb|2VNJ|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form I At
2. 13 Angstroms Resolution
pdb|2VNK|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
1. 93 Angstroms Resolution
pdb|2VNK|B Chain B, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
1. 93 Angstroms Resolution
pdb|2VNK|C Chain C, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
1. 93 Angstroms Resolution
pdb|2VNK|D Chain D, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
1. 93 Angstroms Resolution
Length = 272
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 25 NRHVVFGSVVEGLDVVKKLESMGSQSGKTSK 55
+R +V GS+ +DV+K LES G + G S+
Sbjct: 227 DRAMVCGSLAFNVDVMKVLESYGLREGANSE 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.126 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,828,763
Number of Sequences: 62578
Number of extensions: 51189
Number of successful extensions: 166
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 75
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)